Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 147 of 345
Found at i:49715819 original size:80 final size:79
Alignment explanation
Indices: 49715691--49715895 Score: 234
Period size: 80 Copynumber: 2.6 Consensus size: 79
49715681 GGGCTAAGTG
* * *
49715691 CCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC
1 CCGAAGGC-TTTGTGCT-AGTGACTATATCCGGGCTAAG-TCCCGAAGGCATTTATGCGAGTGAC
*
49715755 TATATCCGGGCCAAAAC
63 CATATCCGGGCCAAAAC
* * *
49715772 CTGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCA
1 CCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTGACCA
* *
49715837 TATCCGGGCTAAGAC
65 TATCCGGGCCAAAAC
* * ** *
49715852 CCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 CCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAG
49715896 ATACTTGGGT
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 14 0.13
79 17 0.16
80 60 0.57
81 15 0.14
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTGACCAT
ATCCGGGCCAAAAC
Found at i:49719486 original size:29 final size:29
Alignment explanation
Indices: 49719381--49719473 Score: 116
Period size: 29 Copynumber: 3.2 Consensus size: 29
49719371 TGACCCACTT
* * * *
49719381 GGCCCAA-TCTCATTTATAAGGCGCATCA
1 GGCCCAATTCACATTCATATGGCCCATCA
49719409 GGCCCAATTCACATTCATATGGCCCATCA
1 GGCCCAATTCACATTCATATGGCCCATCA
* * *
49719438 TGCCCAATTCATATTCATATGGCCCATTA
1 GGCCCAATTCACATTCATATGGCCCATCA
49719467 GGCCCAA
1 GGCCCAA
49719474 ATCAGATGCA
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 7 0.12
29 49 0.88
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
GGCCCAATTCACATTCATATGGCCCATCA
Found at i:49719486 original size:58 final size:57
Alignment explanation
Indices: 49719362--49719486 Score: 137
Period size: 58 Copynumber: 2.2 Consensus size: 57
49719352 ACTCCTACAT
* * *
49719362 ACATGCATATGACCCACTTGGCCCAATCTCATTTATAAGGCGCATCAGGCCCAATTC
1 ACATGCATATGACCCACATGGCCCAATCTCATTTATAAGGCCCATCAGGCCCAAATC
* * * *
49719419 ACATTCATATGGCCCATCAT-GCCCAAT-TCATATTCATATGGCCCATTAGGCCCAAATC
1 ACATGCATATGACCCA-CATGGCCCAATCTCAT-TT-ATAAGGCCCATCAGGCCCAAATC
*
49719477 AGATGCATAT
1 ACATGCATAT
49719487 TCATGCTCAC
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
56 4 0.07
57 23 0.41
58 29 0.52
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (57 bp):
ACATGCATATGACCCACATGGCCCAATCTCATTTATAAGGCCCATCAGGCCCAAATC
Found at i:49719724 original size:16 final size:16
Alignment explanation
Indices: 49719703--49719739 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
49719693 CAACTTTTGC
*
49719703 CTTTTCAGCATTTCGG
1 CTTTTCAGCATTTCAG
*
49719719 CTTTTCGGCATTTCAG
1 CTTTTCAGCATTTCAG
49719735 CTTTT
1 CTTTT
49719740 TCCGATTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.24, G:0.16, T:0.49
Consensus pattern (16 bp):
CTTTTCAGCATTTCAG
Found at i:49727202 original size:29 final size:29
Alignment explanation
Indices: 49727110--49727203 Score: 84
Period size: 29 Copynumber: 3.3 Consensus size: 29
49727100 CCCTACATAT
*
49727110 ATGCATATGGCCCACTT-GGCCC-AATCTC
1 ATGCATATGGCCCA-TTAGGCCCAAATCAC
** * * * *
49727138 ATTTATATGGCCCATCAGGACCAATTCAT
1 ATGCATATGGCCCATTAGGCCCAAATCAC
* *
49727167 ATTCATATGGTCCATTAGGCCCAAATCAC
1 ATGCATATGGCCCATTAGGCCCAAATCAC
49727196 ATGCATAT
1 ATGCATAT
49727204 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 14, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
27 1 0.02
28 16 0.32
29 33 0.66
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
ATGCATATGGCCCATTAGGCCCAAATCAC
Found at i:49734724 original size:22 final size:21
Alignment explanation
Indices: 49734689--49734729 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
49734679 GATTATGCCA
49734689 TTTTCTCCTCTTTTGTCTTTCT
1 TTTTCTCCTCTTTTG-CTTTCT
49734711 TTTTCTCCAT-TTTTGCTTT
1 TTTTCTCC-TCTTTTGCTTT
49734730 TAGTTTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 13 0.72
23 1 0.06
ACGTcount: A:0.02, C:0.24, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTTCTCCTCTTTTGCTTTCT
Found at i:49735960 original size:27 final size:27
Alignment explanation
Indices: 49735886--49735960 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
49735876 CTGAGCTGAA
* *
49735886 ACCCCTATGGGGTAAAATGACCGTAAT
1 ACCCCTATAGGGTAAAATGATCGTAAT
*
49735913 GCCCCTATAGGGTAAAATGATCGTAAT
1 ACCCCTATAGGGTAAAATGATCGTAAT
*
49735940 ACCCCTATATGGTAAAATGAT
1 ACCCCTATAGGGTAAAATGAT
49735961 GATTATGCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
ACCCCTATAGGGTAAAATGATCGTAAT
Found at i:49736369 original size:28 final size:28
Alignment explanation
Indices: 49736310--49736411 Score: 98
Period size: 28 Copynumber: 3.5 Consensus size: 28
49736300 CATTACACTT
* * *
49736310 ACTGATACTGTATTGGGCTTAAGG-CCAC
1 ACTGTTACTGTATAGGGC-TAAGGCCCAG
49736338 ACTGTTACTGTATAGGGCTAAGGCCCAG
1 ACTGTTACTGTATAGGGCTAAGGCCCAG
* *
49736366 ACTGTACTGATACTGAATAGGGCTCAGGCCCAG
1 ACTG---T--TACTGTATAGGGCTAAGGCCCAG
49736399 ACTGTTACTGTAT
1 ACTGTTACTGTAT
49736412 GCACTGTTTA
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
27 5 0.08
28 30 0.48
30 1 0.02
31 1 0.02
33 25 0.40
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGTATAGGGCTAAGGCCCAG
Found at i:49736386 original size:33 final size:34
Alignment explanation
Indices: 49736338--49736408 Score: 108
Period size: 33 Copynumber: 2.1 Consensus size: 34
49736328 TTAAGGCCAC
* *
49736338 ACTGTTACTGTATAGGGCTAAGGCCCAGACTG-T
1 ACTGATACTGAATAGGGCTAAGGCCCAGACTGTT
*
49736371 ACTGATACTGAATAGGGCTCAGGCCCAGACTGTT
1 ACTGATACTGAATAGGGCTAAGGCCCAGACTGTT
49736405 ACTG
1 ACTG
49736409 TATGCACTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 29 0.85
34 5 0.15
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (34 bp):
ACTGATACTGAATAGGGCTAAGGCCCAGACTGTT
Found at i:49741629 original size:21 final size:21
Alignment explanation
Indices: 49741604--49741650 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
49741594 AACTGTTGTT
49741604 GAAAAGAAAGTTGCTGCT-ACA
1 GAAAAGAAAGTTGCTGCTGA-A
* *
49741625 GAAAAGGAAGTTGTTGCTGAA
1 GAAAAGAAAGTTGCTGCTGAA
49741646 GAAAA
1 GAAAA
49741651 AGAAGAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.45, C:0.09, G:0.28, T:0.19
Consensus pattern (21 bp):
GAAAAGAAAGTTGCTGCTGAA
Found at i:49744391 original size:20 final size:20
Alignment explanation
Indices: 49744366--49744413 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
49744356 TACGTAGCAT
49744366 GAATTAATTAAATTATGCCC
1 GAATTAATTAAATTATGCCC
49744386 GAATTAATTAAATTATGCCC
1 GAATTAATTAAATTATGCCC
*
49744406 AAATTAAT
1 GAATTAAT
49744414 ACAAAAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.35
Consensus pattern (20 bp):
GAATTAATTAAATTATGCCC
Found at i:49751051 original size:40 final size:40
Alignment explanation
Indices: 49751014--49751238 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
49751004 GCTACTCGTT
* *
49751014 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
49751054 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
49751094 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
49751134 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
49751173 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
49751214 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
49751239 CATCATTCAA
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 119 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:49751198 original size:119 final size:120
Alignment explanation
Indices: 49751014--49751238 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
49751004 GCTACTCGTT
*
49751014 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
49751079 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
49751134 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
49751196 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
49751239 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:49759110 original size:79 final size:82
Alignment explanation
Indices: 49758999--49759183 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
49758989 GCTACTCGTT
* *
49758999 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
49759062 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
49759079 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
49759142 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
49759159 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49759184 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:49759183 original size:40 final size:40
Alignment explanation
Indices: 49758980--49759183 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
49758970 CGGAATTTAA
** *
49758980 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49759020 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
49759060 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
49759099 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
49759139 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
49759179 CCGGA
1 CCGGA
49759184 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:49767710 original size:22 final size:22
Alignment explanation
Indices: 49767685--49767727 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
49767675 GATCATCACA
49767685 AATAT-AATCGCATACATATCAG
1 AATATCAATCGCA-ACATATCAG
*
49767707 AATATCAATCTCAACATATCA
1 AATATCAATCGCAACATATCA
49767728 ATCATCATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.28
Consensus pattern (22 bp):
AATATCAATCGCAACATATCAG
Found at i:49771931 original size:23 final size:23
Alignment explanation
Indices: 49771859--49771932 Score: 58
Period size: 25 Copynumber: 3.0 Consensus size: 23
49771849 CTATGAATTG
* *
49771859 GTATGCTCACTCGAGCTGTGGATCG
1 GTATGCTCA--CGAGCTGTGGGTCA
* * **
49771884 GTATGCTCTCACGATCTATAAGTCA
1 GTATG--CTCACGAGCTGTGGGTCA
49771909 GTATGCTCACGAGCTGTGGGTCA
1 GTATGCTCACGAGCTGTGGGTCA
49771932 G
1 G
49771933 AACGTAGCTA
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
23 15 0.41
25 18 0.49
27 4 0.11
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (23 bp):
GTATGCTCACGAGCTGTGGGTCA
Found at i:49778355 original size:79 final size:81
Alignment explanation
Indices: 49778219--49778403 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
49778209 TTGAATGATG
* *
49778219 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
49778283 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
49778298 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
49778360 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
49778378 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
49778404 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:49778417 original size:40 final size:40
Alignment explanation
Indices: 49778220--49778403 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
49778210 TGAATGATGT
* * * *
49778220 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
49778260 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
49778300 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
49778338 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
49778379 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
49778404 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:49778425 original size:79 final size:79
Alignment explanation
Indices: 49778272--49778436 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
49778262 GGACTAAGAT
* * **
49778272 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
49778337 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
49778351 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
49778414 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
49778430 CCGAAGG
1 CCGAAGG
49778437 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:49790266 original size:39 final size:40
Alignment explanation
Indices: 49790230--49790357 Score: 163
Period size: 39 Copynumber: 3.2 Consensus size: 40
49790220 GCTACTCGTT
*
49790230 CAAATGCCTTCGGGACATAGTCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGTCGGATTATAGTAACTCGCA
* **
49790269 CAATTGCC-TCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-AGTCGGATTATAGTAACTCGCA
*
49790308 CAAATGCCTTCGGGATCTTAGTCCGGATTATAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGT-CGGATTATAGTAACTCGCA
49790350 CAAATGCC
1 CAAATGCC
49790358 CTTCTCTTAC
Statistics
Matches: 75, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
38 8 0.11
39 30 0.40
40 9 0.12
41 9 0.12
42 19 0.25
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGTCGGATTATAGTAACTCGCA
Found at i:49794100 original size:39 final size:39
Alignment explanation
Indices: 49794047--49794267 Score: 261
Period size: 39 Copynumber: 5.6 Consensus size: 39
49794037 GCTCCTCGTT
* *
49794047 CAAAT-CCTTCGGGACATAGCCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
* *
49794085 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
*
49794125 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* *
49794164 CAAATGCCTTCGGGCTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
49794203 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
49794244 CAAA-GCCTTCGGGCTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGA
49794268 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 5 0.03
39 99 0.61
40 50 0.31
41 8 0.05
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:49794222 original size:79 final size:77
Alignment explanation
Indices: 49794047--49794265 Score: 248
Period size: 79 Copynumber: 2.8 Consensus size: 77
49794037 GCTCCTCGTT
* * * *
49794047 CAAAT-CCTTCGGGACATAGCCC-GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGAATTAGT-ACTCGCACAAATGCCTTCGGG-CTTAGCCCGA
*
49794110 ATTTAGTAACTCGCA
63 AATTAGTAACTCGCA
*
49794125 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGAAA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTA-CTCGCACAAATGCCTTCGGGCTTAGCCCGAAA
*
49794190 TTAGTATCTCGCA
65 TTAGTAACTCGCA
* * *
49794203 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCACAAA-GCCTTCGGGCTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGAAT-TAGT-AC-TCGCACAAATGCCTTCGGGCTTAGCCCG
49794266 GACATCATTC
Statistics
Matches: 123, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
78 51 0.41
79 63 0.51
80 9 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTACTCGCACAAATGCCTTCGGGCTTAGCCCGAAAT
TAGTAACTCGCA
Found at i:49794228 original size:118 final size:117
Alignment explanation
Indices: 49794047--49794267 Score: 304
Period size: 118 Copynumber: 1.9 Consensus size: 117
49794037 GCTCCTCGTT
*
49794047 CAAATCCTTCGGGACATAGCCCGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 CAAATCCTTCGGGACATAGCCCGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
49794112 TTAGTAAC-TCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
66 ATAGTAACTTAGCACAAA-GCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * **
49794164 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAT-CCTTCGGGACATAGCCCG-AATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
49794227 GATATGGTCACTTAGCACAAAGCCTTCGGGCTTAGCCCGGA
63 GATATAGTAACTTAGCACAAAGCCTTCGGGCTTAGCCCGGA
49794268 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
117 16 0.18
118 67 0.74
119 8 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (117 bp):
CAAATCCTTCGGGACATAGCCCGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:49794628 original size:64 final size:62
Alignment explanation
Indices: 49794512--49794635 Score: 214
Period size: 63 Copynumber: 2.0 Consensus size: 62
49794502 CACTTTTTCC
49794512 TTCCCTTTATCGGATTTATTTCCCCTTTGCTCTTGAGCTTAATTAAACAATAATATTGATTTAA
1 TTCCCTTTATCGGATTTATTTCCCCTTTGCTCTTGAGCTTAATTAAACAATAA-A-TGATTTAA
49794576 TTCCCTTTATCGGATTTATTT-CCCTTTGCTCTTGAGCTTAATTAAACAAATAAATGATTT
1 TTCCCTTTATCGGATTTATTTCCCCTTTGCTCTTGAGCTTAATTAAAC-AATAAATGATTT
49794636 TAACTTACCC
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
62 6 0.10
63 27 0.46
64 26 0.44
ACGTcount: A:0.27, C:0.19, G:0.10, T:0.45
Consensus pattern (62 bp):
TTCCCTTTATCGGATTTATTTCCCCTTTGCTCTTGAGCTTAATTAAACAATAAATGATTTAA
Found at i:49806485 original size:45 final size:45
Alignment explanation
Indices: 49806436--49806700 Score: 413
Period size: 45 Copynumber: 5.9 Consensus size: 45
49806426 TCGGCCATGG
* * * * *
49806436 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
49806481 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
49806526 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
49806571 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
49806616 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGG-TCAAA
* * * **
49806662 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
49806701 TCCACCACTT
Statistics
Matches: 205, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
45 166 0.81
46 39 0.19
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:49806835 original size:16 final size:16
Alignment explanation
Indices: 49806814--49806845 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
49806804 CATTCTGCAT
49806814 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
49806830 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
49806846 AAACACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:49810318 original size:45 final size:45
Alignment explanation
Indices: 49810269--49810532 Score: 420
Period size: 45 Copynumber: 5.9 Consensus size: 45
49810259 TCGGCCATGG
* * * * *
49810269 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
49810314 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
49810359 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
49810404 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
49810449 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
* * * **
49810494 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
49810533 TCCACCTCTT
Statistics
Matches: 205, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 205 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:49810667 original size:16 final size:16
Alignment explanation
Indices: 49810646--49810677 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
49810636 CATTCTGCAT
49810646 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
49810662 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
49810678 AAACACATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:49814150 original size:45 final size:45
Alignment explanation
Indices: 49814101--49814365 Score: 413
Period size: 45 Copynumber: 5.9 Consensus size: 45
49814091 TCGGCCATGG
* * * * *
49814101 TGCTTCCTCAATTTGTTCCTTAAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
49814146 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
49814191 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
49814236 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
49814281 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGG-TCAAA
* * * **
49814327 TGCTTCCTTAATTTGTTCCACAAATTATGCATGATGTTG
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTG
49814366 TCCACCTCTT
Statistics
Matches: 205, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
45 166 0.81
46 39 0.19
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:49814500 original size:16 final size:16
Alignment explanation
Indices: 49814479--49814510 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
49814469 CATTCTGCAT
49814479 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
*
49814495 TTAAACAACAGTAGCA
1 TTAAACAACAGCAGCA
49814511 AAACACATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.22, G:0.12, T:0.16
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:49822285 original size:13 final size:13
Alignment explanation
Indices: 49822263--49822295 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
49822253 AAGGGTTTGT
49822263 TTAT-TAAACTAA
1 TTATCTAAACTAA
49822275 TTATCTAAACTAA
1 TTATCTAAACTAA
*
49822288 TTAACTAA
1 TTATCTAA
49822296 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:49823610 original size:28 final size:29
Alignment explanation
Indices: 49823578--49823692 Score: 126
Period size: 29 Copynumber: 4.0 Consensus size: 29
49823568 TACGTGTATC
*
49823578 TGACCCATTAAGCCC-AATCATATTCATA
1 TGACCCATTAAGCCCAAATCACATTCATA
* * *
49823606 TGACCCATTAAGCCCAAACCACCTTTATA
1 TGACCCATTAAGCCCAAATCACATTCATA
* * *
49823635 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGACCCATTAAGCCCAAATCACATTCATA
* * *
49823664 TGGCCCATTAGGCCC-AGTCACATTCATA
1 TGACCCATTAAGCCCAAATCACATTCATA
49823692 T
1 T
49823693 TCATGCTCAC
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
28 27 0.36
29 49 0.64
ACGTcount: A:0.31, C:0.30, G:0.11, T:0.27
Consensus pattern (29 bp):
TGACCCATTAAGCCCAAATCACATTCATA
Found at i:49825177 original size:16 final size:16
Alignment explanation
Indices: 49825152--49825189 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
49825142 AGAAAGAAAA
*
49825152 ATTTTGAGATTTCGGG
1 ATTTTTAGATTTCGGG
*
49825168 ATTTTTAGATTTTGGG
1 ATTTTTAGATTTCGGG
49825184 ATTTTT
1 ATTTTT
49825190 GGGGCGTTAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.18, C:0.03, G:0.24, T:0.55
Consensus pattern (16 bp):
ATTTTTAGATTTCGGG
Found at i:49826812 original size:29 final size:29
Alignment explanation
Indices: 49826727--49826828 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 29
49826717 TACCTGTATC
* * *
49826727 TGGCCCATTACGCAC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
* * ** *
49826755 TGGCCCATTAAGCCCAAACCACCTATATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
49826784 TGGCCCATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
**
49826813 TGGCCTGTTAGGCCCA
1 TGGCCCATTAGGCCCA
49826829 GTAACATTCA
Statistics
Matches: 59, Mismatches: 14, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 13 0.22
29 46 0.78
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTTATA
Found at i:49828334 original size:16 final size:16
Alignment explanation
Indices: 49828315--49828347 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
49828305 AAAATTTCGA
49828315 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
*
49828331 GATTTCGGGATTTTTG
1 GATTTCAGGATTTTTG
49828347 G
1 G
49828348 GGCGTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:49830096 original size:64 final size:64
Alignment explanation
Indices: 49829993--49830112 Score: 170
Period size: 64 Copynumber: 1.9 Consensus size: 64
49829983 TAGTTGATGG
* * * * *
49829993 TCATCACCATCACTTTTCCTAATCGATAGCTGAAGCTATCTCTTTTCATATTCGATGGTCGTCA
1 TCATCACCATCACTTTTCATAATCGATAGCCGAACCTATCCCATTTCATATTCGATGGTCGTCA
*
49830057 TCATCCACCATCCCTTTTCATAAT-GATAGCCGAACCTATCCCATTTCATATTCGAT
1 TCAT-CACCATCACTTTTCATAATCGATAGCCGAACCTATCCCATTTCATATTCGAT
49830113 AGCCGAAGCT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
64 32 0.65
65 17 0.35
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.36
Consensus pattern (64 bp):
TCATCACCATCACTTTTCATAATCGATAGCCGAACCTATCCCATTTCATATTCGATGGTCGTCA
Found at i:49830106 original size:28 final size:29
Alignment explanation
Indices: 49830066--49830134 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
49830056 ATCATCCACC
49830066 ATCCCTTTTCATAAT-GATAGCCGAACCT
1 ATCCCTTTTCATAATCGATAGCCGAACCT
* * *
49830094 ATCCCATTTCATATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCGAACCT
49830123 ATCCCTTTTCAT
1 ATCCCTTTTCAT
49830135 TGGTCGATGA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 13 0.36
29 23 0.64
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCGAACCT
Found at i:49833769 original size:42 final size:42
Alignment explanation
Indices: 49833712--49833833 Score: 158
Period size: 43 Copynumber: 2.9 Consensus size: 42
49833702 TCAGGGTTAT
49833712 TGAGATTA-CGTGTAAGACCATATCTGGGATATGGCATCAATA
1 TGAGATTACCG-GTAAGACCATATCTGGGATATGGCATCAATA
* * * *
49833754 TGAGACTT-CGGGTAAGACCATATCTCGGCTATTGGCATCGATA
1 TGAGA-TTACCGGTAAGACCATATCTGGGATA-TGGCATCAATA
*
49833797 TGAGATTACCTGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTACCGGTAAGACCATATCTGGGATATGGCAT
49833834 TGGTACGGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
42 31 0.46
43 37 0.54
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
TGAGATTACCGGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:49834298 original size:17 final size:19
Alignment explanation
Indices: 49834276--49834495 Score: 227
Period size: 18 Copynumber: 12.4 Consensus size: 19
49834266 ATGGAAATAT
49834276 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
49834293 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
*
49834312 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
49834329 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
*
49834347 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
*
49834365 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
49834382 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
*
49834400 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
49834417 AATCTTATATATGAT-TGC
1 AATCTTACATATGATATGC
*
49834435 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
49834452 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
* *
49834470 AATCTTAGATATGATATAC
1 AATCTTACATATGATATGC
49834489 AATCTTA
1 AATCTTA
49834496 GAAGATATGA
Statistics
Matches: 185, Mismatches: 4, Indels: 26
0.86 0.02 0.12
Matches are distributed among these distances:
17 69 0.37
18 82 0.44
19 34 0.18
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:49834355 original size:35 final size:35
Alignment explanation
Indices: 49834284--49834497 Score: 340
Period size: 35 Copynumber: 6.0 Consensus size: 35
49834274 ATAATCTTCA
49834284 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATA--CAATCTTAGAT
* *
49834322 ATGA-TACAATCTTAGATATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
49834357 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
49834392 ATGATTGCAATCTTAGATATGATACAATCTTATAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
49834427 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
49834462 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
49834498 AGATATGATT
Statistics
Matches: 166, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
35 116 0.70
36 32 0.19
37 14 0.08
38 4 0.02
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:49834371 original size:53 final size:53
Alignment explanation
Indices: 49834284--49834497 Score: 333
Period size: 53 Copynumber: 4.0 Consensus size: 53
49834274 ATAATCTTCA
49834284 ATGATATGCAATCTTAGATATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
49834339 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
* * *
49834392 ATGATTGCAATCTTAGATATGA-TACAATCTTATATATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGA-TACAATCTTAGAT
*
49834445 ATGA-TACAATCTTAGATATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATG--ATACAATCTTAGA
49834498 AGATATGATT
Statistics
Matches: 148, Mismatches: 7, Indels: 9
0.90 0.04 0.05
Matches are distributed among these distances:
52 31 0.21
53 82 0.55
54 29 0.20
55 6 0.04
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (53 bp):
ATGATTGCAATCTTAGATATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:49837983 original size:33 final size:33
Alignment explanation
Indices: 49837941--49838006 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
49837931 TTAAGGTAGC
* *
49837941 ATGTTAAGCAGGAATGCCCACTTGTTTGCCAAT
1 ATGTTAAGCAAGAATGCCAACTTGTTTGCCAAT
*
49837974 ATGTTAAGCAAGAATGCGAACTTGTTTGCCAAT
1 ATGTTAAGCAAGAATGCCAACTTGTTTGCCAAT
49838007 CTTTCTTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (33 bp):
ATGTTAAGCAAGAATGCCAACTTGTTTGCCAAT
Found at i:49841932 original size:44 final size:44
Alignment explanation
Indices: 49841880--49842053 Score: 192
Period size: 44 Copynumber: 4.0 Consensus size: 44
49841870 CAAGATTTGG
*
49841880 CATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGA
1 CATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGA
* * * * * ** *
49841924 CATTCCTGTGCTTACAGTGAAGTAGATTGAAGATTTCAG-TAT-A
1 CATCCCTGTGTTTATAGGGAA-CAGATTGAAGATAGCAGATCTGA
* * *
49841967 GCATCCCTGTGTTCATAGGGAAC-GAGTTGAAGATAGCAGATTTGG
1 -CATCCCTGTGTTTATAGGGAACAGA-TTGAAGATAGCAGATCTGA
49842012 CATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCT
1 CATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCT
49842054 AACCTTCAGA
Statistics
Matches: 103, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 2 0.02
43 12 0.12
44 74 0.72
45 15 0.15
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (44 bp):
CATCCCTGTGTTTATAGGGAACAGATTGAAGATAGCAGATCTGA
Found at i:49842175 original size:34 final size:34
Alignment explanation
Indices: 49842128--49842220 Score: 132
Period size: 34 Copynumber: 2.7 Consensus size: 34
49842118 CAAATCGAGG
* *
49842128 ACATAACATATTTGACTTTCAGATGTTCTTAGAC
1 ACATAGCAGATTTGACTTTCAGATGTTCTTAGAC
*
49842162 ACATAGCAGATTTGACTCTCAGATGTTCTTAGAC
1 ACATAGCAGATTTGACTTTCAGATGTTCTTAGAC
* * *
49842196 ACATAGCAGATCTAACCTTCAGATG
1 ACATAGCAGATTTGACTTTCAGATG
49842221 ATTAGACTGA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 52 1.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (34 bp):
ACATAGCAGATTTGACTTTCAGATGTTCTTAGAC
Found at i:49842549 original size:83 final size:83
Alignment explanation
Indices: 49842445--49843329 Score: 1457
Period size: 83 Copynumber: 10.7 Consensus size: 83
49842435 GAAGTAGATC
* *
49842445 CAAGATGGTTTGGCATCCTTGTGCTTACAAGAAACAAATCGAGGACATAGCAGATTAGACTTTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
49842510 GATGTTCTCAAGCAGACT
66 GATGTTCTCAAACAGACT
*
49842528 CAAGATGGTTTGGCTTCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
49842593 GATGTTCTCAAATAGACT
66 GATGTTCTCAAACAGACT
* *
49842611 CAAGATGGTTTGGCGTCCTTGTGCTTACAAGGAACAAATTGAGGACATAGCAGATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
49842676 GATGTCCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* *
49842694 CAAGATGGTTTGGCATTCTTGTGCTTACAAGAAACAAATCGAGGACATAGCAGATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
49842759 AATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
*
49842777 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTTA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
49842842 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * *
49842860 TAAGATGGTTTGGCATCCTTTTGCTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
49842925 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * * * * *
49842943 CAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCGAGGACATAGCATATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
49843008 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
*
49843026 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
49843091 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
* * * *
49843109 TAAGATGGTTTGGCATCCTTGTGCTTACAAGGAAAAAATCGAGGACATAGCATATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
*
49843174 GATGTTCTCAAACAAACT
66 GATGTTCTCAAACAGACT
* * * * * *
49843192 CAAGATGATTTGGCATTCTTGTGTTTACAAGAAACAAATCAAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
49843257 GATGTTCTCAAACAGACT
66 GATGTTCTCAAACAGACT
*
49843275 CAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGA-GACATAGCAGATT
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATT
49843330 TGGCTTTCAC
Statistics
Matches: 748, Mismatches: 54, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
82 13 0.02
83 735 0.98
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATAGCAGATTAGACTCTCA
GATGTTCTCAAACAGACT
Found at i:49844107 original size:17 final size:19
Alignment explanation
Indices: 49844085--49844251 Score: 167
Period size: 17 Copynumber: 9.4 Consensus size: 19
49844075 ATGGAAATAT
49844085 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATATGC
*
49844102 AATCTTAGATATGATATGC
1 AATCTTACATATGATATGC
* *
49844121 AATCTTAGATAT-A-ATAC
1 AATCTTACATATGATATGC
*
49844138 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
*
49844156 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
49844173 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
*
49844191 AATCTTAGATATGATA--C
1 AATCTTACATATGATATGC
*
49844208 AATCTTAGATATGAT-TGC
1 AATCTTACATATGATATGC
* *
49844226 AATCTTAAATATGATATAC
1 AATCTTACATATGATATGC
49844245 AATCTTA
1 AATCTTA
49844252 GAAGATATGA
Statistics
Matches: 134, Mismatches: 5, Indels: 20
0.84 0.03 0.13
Matches are distributed among these distances:
17 53 0.40
18 51 0.38
19 30 0.22
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (19 bp):
AATCTTACATATGATATGC
Found at i:49844164 original size:35 final size:35
Alignment explanation
Indices: 49844101--49844253 Score: 252
Period size: 35 Copynumber: 4.3 Consensus size: 35
49844091 CAATGATATG
49844101 CAATCTTAGATATGATATGCAATCTTAGATATAATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATAATA
*
49844137 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATAATA
*
49844172 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATAATA
*
49844207 CAATCTTAGATATGATTGCAATCTTAAATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATAT-A-ATA
49844244 CAATCTTAGA
1 CAATCTTAGA
49844254 AGATATGATT
Statistics
Matches: 112, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
35 83 0.74
36 16 0.14
37 13 0.12
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATAATA
Found at i:49863665 original size:23 final size:25
Alignment explanation
Indices: 49863601--49863672 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 25
49863591 AGCACTCTCT
*
49863601 CGAGCCATATAACAGGAAGCTCATG
1 CGAGCCATATAACAGGAAGCTCATC
* * *
49863626 TGAGCCATGTAACAGGAAGCTTATC
1 CGAGCCATATAACAGGAAGCTCATC
*
49863651 CGAG-C-TATAACAGGAAACTCAT
1 CGAGCCATATAACAGGAAGCTCAT
49863673 AAGAGTTTAG
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
23 14 0.36
24 1 0.03
25 24 0.62
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (25 bp):
CGAGCCATATAACAGGAAGCTCATC
Found at i:49865687 original size:21 final size:21
Alignment explanation
Indices: 49865657--49865704 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
49865647 TATTTATCTA
49865657 ATTAAATAATTATAAAATATC
1 ATTAAATAATTATAAAATATC
*
49865678 ATTAATTAATTATAAAATATC
1 ATTAAATAATTATAAAATATC
49865699 ATTAAA
1 ATTAAA
49865705 ATATCACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTAAATAATTATAAAATATC
Found at i:49871729 original size:17 final size:16
Alignment explanation
Indices: 49871707--49871741 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
49871697 CAAGATGGGG
49871707 TGGAAAATTGAGAAAAA
1 TGGAAAATT-AGAAAAA
*
49871724 TGGAAAATTATAAAAA
1 TGGAAAATTAGAAAAA
49871740 TG
1 TG
49871742 CCCTTAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (16 bp):
TGGAAAATTAGAAAAA
Found at i:49874108 original size:43 final size:43
Alignment explanation
Indices: 49874060--49874144 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
49874050 CGGCCGTTTA
*
49874060 TCCCTATTTCGAATGCCTACACGGCCTAAGAAATGGGCGTGTG
1 TCCCTATTTCGAATGCCTACACAGCCTAAGAAATGGGCGTGTG
* * *
49874103 TCCCTATTTTGAATGCCTACACAGCCTAAGACATGGGTGTGT
1 TCCCTATTTCGAATGCCTACACAGCCTAAGAAATGGGCGTGT
49874145 CTCTTAGCCG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.28
Consensus pattern (43 bp):
TCCCTATTTCGAATGCCTACACAGCCTAAGAAATGGGCGTGTG
Found at i:49877378 original size:40 final size:40
Alignment explanation
Indices: 49877281--49877503 Score: 326
Period size: 40 Copynumber: 5.6 Consensus size: 40
49877271 TGGATGATAA
* * * * *
49877281 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACT-AGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
49877320 TCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
49877359 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
49877399 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
49877439 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
49877479 CCGGGTTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
49877504 AGCGTGTAGC
Statistics
Matches: 169, Mismatches: 12, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
38 25 0.15
39 12 0.07
40 130 0.77
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:49885516 original size:40 final size:40
Alignment explanation
Indices: 49885418--49885648 Score: 322
Period size: 40 Copynumber: 5.8 Consensus size: 40
49885408 TGGATGATAA
* * * * **
49885418 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
49885458 TCGGGC-AAGTCCCAAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
49885497 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
49885537 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * *
49885577 CCGAGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
49885617 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
49885649 AGCTATATCC
Statistics
Matches: 172, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 31 0.18
40 139 0.81
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:49889874 original size:25 final size:25
Alignment explanation
Indices: 49889844--49889893 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
49889834 ATGATGGTAC
*
49889844 ATGATATAT-TGATATATTGAAATGG
1 ATGATATATGT-ATATAATGAAATGG
49889869 ATGATATATGTATATAATGAAATGG
1 ATGATATATGTATATAATGAAATGG
49889894 TAAGATAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (25 bp):
ATGATATATGTATATAATGAAATGG
Found at i:49890628 original size:51 final size:51
Alignment explanation
Indices: 49890569--49890668 Score: 191
Period size: 51 Copynumber: 2.0 Consensus size: 51
49890559 GAATTGAGTA
49890569 AATTTCATATTTGAAATGGATAGATATGATTAAAGTTTATACGAGCTTACT
1 AATTTCATATTTGAAATGGATAGATATGATTAAAGTTTATACGAGCTTACT
*
49890620 AATTTCATATTTGAAATGGATAGATATGATTAAAGTTTATGCGAGCTTA
1 AATTTCATATTTGAAATGGATAGATATGATTAAAGTTTATACGAGCTTA
49890669 TTAAGCATTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (51 bp):
AATTTCATATTTGAAATGGATAGATATGATTAAAGTTTATACGAGCTTACT
Found at i:49892372 original size:26 final size:26
Alignment explanation
Indices: 49892343--49892402 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
49892333 TCCCTTTGAA
* * *
49892343 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
49892369 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
49892397 TCATTC
1 TCATTC
49892403 TCAATATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:49892418 original size:28 final size:28
Alignment explanation
Indices: 49892350--49892419 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
49892340 GAATCATTCG
49892350 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTTGCACACTAAGTGTCATTCTCA
* *
49892378 ATATCTCGCACACTAAGTGTCATTCTCA
1 ATATTTTGCACACTAAGTGTCATTCTCA
*
49892406 ATATTTTGTACACT
1 ATATTTTGCACACT
49892420 GAGTACCATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.39
Consensus pattern (28 bp):
ATATTTTGCACACTAAGTGTCATTCTCA
Found at i:49903672 original size:50 final size:51
Alignment explanation
Indices: 49903588--49903716 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
49903578 GACCATGGCA
* * *
49903588 ACAAGTGATAAGTGATAGCTTCGGCTACATTTATCTGATCAAGGACAAGTG
1 ACAAGTAATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
49903639 A-AAGTAATAAGTGATAGCTTCGGCTACACTTATCTGGTCAAGGACAAATG
1 ACAAGTAATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
49903689 ACAAGTGAA-AAGTGGTAGCTTCGGCTAC
1 ACAAGT-AATAAGTGATAGCTTCGGCTAC
49903717 CTGATTAGTG
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
50 46 0.65
51 23 0.32
52 2 0.03
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (51 bp):
ACAAGTAATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:49903727 original size:31 final size:31
Alignment explanation
Indices: 49903692--49903871 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
49903682 ACAAATGACA
*
49903692 AGTGAAAAGTGGTAGCTTCGGCTACCTGATT
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
49903723 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
49903754 AGTGAAAAGTGATATCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
49903785 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
49903816 AGTGAAAAATGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
49903847 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
49903872 AAGTGACAAG
Statistics
Matches: 134, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 134 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:49904001 original size:46 final size:47
Alignment explanation
Indices: 49903891--49904012 Score: 156
Period size: 47 Copynumber: 2.6 Consensus size: 47
49903881 GTGATTTTCA
* * *
49903891 TATAAGACCATATCTAGGATATGGCATCGGTGTGATAAATGATACTG
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATAAATGATACTG
** *
49903938 TATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATTC-G
1 TATAAGACCATATCTGGGATATGGCATCAGTGAGATAAATGATACTG
* * *
49903984 TGTAAGACCATAGCTGGGCTATGGCATCA
1 TATAAGACCATATCTGGGATATGGCATCA
49904013 TTATGTGAAG
Statistics
Matches: 66, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
46 27 0.41
47 39 0.59
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (47 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGAGATAAATGATACTG
Found at i:49905714 original size:34 final size:34
Alignment explanation
Indices: 49905671--49905737 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
49905661 TTGTGGATCC
*
49905671 GAAGCTGCTTTCAAACTATCTCGAATTACTTTCT
1 GAAGCTGCTTTCAAACTATCGCGAATTACTTTCT
49905705 GAAGCTGCTTTCAAACTATCGCGAATTACTTTC
1 GAAGCTGCTTTCAAACTATCGCGAATTACTTTC
49905738 ACTTTATCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (34 bp):
GAAGCTGCTTTCAAACTATCGCGAATTACTTTCT
Found at i:49915145 original size:37 final size:37
Alignment explanation
Indices: 49915046--49915148 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
49915036 CGGATAGTCC
* *
49915046 CCACACGTAGTTATCGGGTCTTACCAGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
49915083 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
49915120 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
49915149 ATATATTTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:49915378 original size:48 final size:48
Alignment explanation
Indices: 49915321--49915725 Score: 684
Period size: 48 Copynumber: 8.4 Consensus size: 48
49915311 GCCGAATCAC
* *
49915321 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTCCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
49915369 TATCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * * *
49915417 TAGTCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
49915465 TAGCCATTCGGCTTTACCCCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
49915513 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
49915561 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* *
49915609 TAGCCATTCGGCTTTACCGCATATATATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
49915657 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
49915705 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
49915726 CACATATATA
Statistics
Matches: 337, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 337 1.00
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:49919288 original size:28 final size:27
Alignment explanation
Indices: 49919257--49919348 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 27
49919247 CTGACTGATT
49919257 TCGCACACATAGCGCTCGATTATAGAAC
1 TCGCACACATAGCGCTCGATTA-AGAAC
* * **
49919285 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGCG-CTCGATTAAGAA-C
49919314 TCGCACACATAGCGCTCGATTGAAGAAC
1 TCGCACACATAGCGCTCGATT-AAGAAC
*
49919342 TTGCACA
1 TCGCACA
49919349 GACAGTGCCT
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
28 28 0.54
29 24 0.46
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (27 bp):
TCGCACACATAGCGCTCGATTAAGAAC
Found at i:49919450 original size:39 final size:40
Alignment explanation
Indices: 49919366--49919634 Score: 447
Period size: 40 Copynumber: 6.8 Consensus size: 40
49919356 CCTCATAATT
* * * *
49919366 CCAGCATGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGACATAACA
*
49919405 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
49919445 -CAGCACGAATGCTCTTCGGGACTTAGCCC-GACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
49919483 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
*
49919523 CCAGCACGAATGCTCTTCGGGACTTAGCCCGAACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
49919563 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
49919603 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGG
49919635 CTATATAACT
Statistics
Matches: 218, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
38 9 0.04
39 70 0.32
40 139 0.64
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGACATAACA
Found at i:49920989 original size:37 final size:37
Alignment explanation
Indices: 49920916--49921017 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
49920906 CGAATAGTCC
*
49920916 CCACACGTAGTTATCGGGTCTTA-CCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
*
49920952 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
49920989 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
49921018 ATATATTTCC
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
36 22 0.35
37 41 0.65
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:49921244 original size:48 final size:48
Alignment explanation
Indices: 49921190--49921543 Score: 642
Period size: 48 Copynumber: 7.4 Consensus size: 48
49921180 GCCGAATCAC
*
49921190 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
49921238 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
49921286 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
49921334 TAGCCATTCGGCTTTACC-CATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
49921381 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
49921429 TAGCCATTCGGCTTTA-C-CATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
49921475 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
49921523 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
49921544 CACATATATA
Statistics
Matches: 296, Mismatches: 7, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
46 45 0.15
47 46 0.16
48 205 0.69
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:49921541 original size:94 final size:95
Alignment explanation
Indices: 49921190--49921540 Score: 641
Period size: 94 Copynumber: 3.7 Consensus size: 95
49921180 GCCGAATCAC
*
49921190 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
*
49921255 CACATATACATATCTCATACATATTTCACAC
66 C-CATATACATATCTCATACATATTTCACAT
* * *
49921286 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
49921351 CCATATACATATCTCATACATATTTCACAT
66 CCATATACATATCTCATACATATTTCACAT
49921381 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA-
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
49921445 CCATATACATATCTCATACATATTTCACAT
66 CCATATACATATCTCATACATATTTCACAT
49921475 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
49921540 C
66 C
49921541 ACACACATAT
Statistics
Matches: 246, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
94 94 0.38
95 90 0.37
96 62 0.25
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.35
Consensus pattern (95 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTAC
CCATATACATATCTCATACATATTTCACAT
Found at i:49928503 original size:18 final size:18
Alignment explanation
Indices: 49928480--49928514 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49928470 TTCCCGGATG
*
49928480 ATAATCTATCACTAACTT
1 ATAATCTATCAATAACTT
*
49928498 ATAATCTTTCAATAACT
1 ATAATCTATCAATAACT
49928515 CGAGCCATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATCTATCAATAACTT
Found at i:49932241 original size:19 final size:19
Alignment explanation
Indices: 49932217--49932255 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
49932207 GAACAGTTGA
*
49932217 GACACACGTCCGTGTCTCT
1 GACACACGCCCGTGTCTCT
49932236 GACACACGCCCGTGTCTCT
1 GACACACGCCCGTGTCTCT
49932255 G
1 G
49932256 CACGTGTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.15, C:0.38, G:0.23, T:0.23
Consensus pattern (19 bp):
GACACACGCCCGTGTCTCT
Found at i:49943056 original size:17 final size:17
Alignment explanation
Indices: 49943036--49943074 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
49943026 ACAATGCTTT
49943036 ATATAAAATATAATATA
1 ATATAAAATATAATATA
*
49943053 ATATAACATATAATATA
1 ATATAAAATATAATATA
49943070 ATATA
1 ATATA
49943075 TTTTAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
ATATAAAATATAATATA
Found at i:49943666 original size:31 final size:29
Alignment explanation
Indices: 49943631--49943711 Score: 72
Period size: 31 Copynumber: 2.7 Consensus size: 29
49943621 AATATCAAAA
*
49943631 TTATATATGAATTTTGATTTAATATACAATG
1 TTATATATGAAATTTGATTT--TATACAATG
* * * * * *
49943662 TTATACATGAACTTTAATTTTGTGCAATT
1 TTATATATGAAATTTGATTTTATACAATG
49943691 TTATATATGAAAATTTGATTT
1 TTATATATG-AAATTTGATTT
49943712 GATTCAATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
29 14 0.35
30 9 0.22
31 17 0.43
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.49
Consensus pattern (29 bp):
TTATATATGAAATTTGATTTTATACAATG
Found at i:49943915 original size:16 final size:16
Alignment explanation
Indices: 49943896--49943930 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
49943886 TGTATAATCA
*
49943896 TAACAAATTATAAATT
1 TAACAAAGTATAAATT
*
49943912 TAACCAAGTATAAATT
1 TAACAAAGTATAAATT
49943928 TAA
1 TAA
49943931 GATTTTCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (16 bp):
TAACAAAGTATAAATT
Found at i:49963443 original size:308 final size:307
Alignment explanation
Indices: 49962722--49963649 Score: 1339
Period size: 305 Copynumber: 3.0 Consensus size: 307
49962712 AATTACAAAA
* * *
49962722 GAATAAAAAAGAAAGCCTTTTTCACTAGCAGTAACATGCAGAGCGAAGAAATAAAATAATTTTAA
1 GAATAAAAAAGAAAGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAATGATTTTAA
*
49962787 ATCCAAATTTGAGTAAAACCAAGTTCTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
66 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
* * * *
49962852 TAATCATGTAGAGTCTCCAAGTACCAATCAGATAAAACTAATAACAT--ATATATAGTTTAAAGA
131 TAATAATGTAGAGTCTCAAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAG-
* * * * * *
49962915 AAACAAAAACTATTAACCAATTAGCTCTAAACCAAAATTTACCTAAGACCAGCAAAAAAAAAAAA
195 AAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACTTACCTAAGACTAGCAAAAAAAAAAAG
* * * *
49962980 ATTGCAAGGTAGTTCAACAGAAAATC-ACAGTAA-AAAAGAATAATCTG
260 ATTGCAAGGTAATTCAGCACAAAATCAACAATAAGAAAA-AATAATCTG
* * * *
49963027 GAATAAAAAGGAAAGCCCTTTTCACCAGCAATAACATGCAGAGCGAAAAAATAAAACGATTTTAA
1 GAATAAAAAAGAAAGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAATGATTTTAA
* * * * *
49963092 ATCCAAATTTGTGTAAAACCAAGTTGTTAGTAGAAATTATGCAAAACTCACAACAGATATACAAT
66 ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
*
49963157 TAATAATGTAGAGTCTCAAAGTACCAAGCAGATAAAACTAACAACATAGAAATATAGTTTAAAGA
131 TAATAATGTAGAGTCTCAAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGA
* *
49963222 ATACAAAAGCTACTAACCAATTAGCT-TGAACCAAAACTTACCTAAGACTAGC-AAAAAAGAATG
196 A-ACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACTTACCTAAGACTAGCAAAAAAAAAAAG
*
49963285 ATTGCAAGGTAATTCAGCACAAAATCAACAATAAGAAAAAATAATTTG
260 ATTGCAAGGTAATTCAGCACAAAATCAACAATAAGAAAAAATAATCTG
* * * *
49963333 GAATAAAAAAAGAAAGGCCCTTTTCACCATCAGTAATATGCAAAACGAAGAAATAAAATGATTTT
1 GAAT-AAAAAAGAAA-GCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAATGATTTT
* *
49963398 AGATCCAAATTTGAGTAAAACCAAGTTGTTAGCATAAATTATGCAAAACCCACATCAGAAATACA
64 AAATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACA
* * *
49963463 ATTAATGATGTAGAGTCTTCAAA-TACTAAGCAGATAAAACTAATAACATAGAAATATAATTTAA
129 ATTAATAATGTAGAGTC-TCAAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAA
* *
49963527 AGAAACACAAGCTACTAACCAATTAGCTCTGAACCAAAACTTACCCAAGACTAGCAAAAATAAAA
193 AGAAACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACTTACCTAAGACTAGC--AAA-AAAA
*
49963592 AAAAGATTGCAAGGTAATTCAGCACAAAATCAACAATAAGAAAGAATAATCTG
255 AAAAGATTGCAAGGTAATTCAGCACAAAATCAACAATAAGAAAAAATAATCTG
49963645 GAATA
1 GAATA
49963650 CCCTCAAAGA
Statistics
Matches: 554, Mismatches: 56, Indels: 20
0.88 0.09 0.03
Matches are distributed among these distances:
305 191 0.34
306 43 0.08
307 72 0.13
308 183 0.33
309 5 0.01
311 3 0.01
312 57 0.10
ACGTcount: A:0.50, C:0.16, G:0.12, T:0.22
Consensus pattern (307 bp):
GAATAAAAAAGAAAGCCCTTTTCACCAGCAGTAACATGCAGAGCGAAGAAATAAAATGATTTTAA
ATCCAAATTTGAGTAAAACCAAGTTGTTAGCAGAAATTATGCAAAACCCACATCAGAAATACAAT
TAATAATGTAGAGTCTCAAAGTACCAAGCAGATAAAACTAATAACATAGAAATATAGTTTAAAGA
AACAAAAGCTACTAACCAATTAGCTCTGAACCAAAACTTACCTAAGACTAGCAAAAAAAAAAAGA
TTGCAAGGTAATTCAGCACAAAATCAACAATAAGAAAAAATAATCTG
Found at i:49970876 original size:15 final size:16
Alignment explanation
Indices: 49970856--49970888 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
49970846 GAGATTATTT
49970856 TTCA-TTTGAATAACA
1 TTCATTTTGAATAACA
*
49970871 TTCATTTTGAATTACA
1 TTCATTTTGAATAACA
49970887 TT
1 TT
49970889 TACCATTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (16 bp):
TTCATTTTGAATAACA
Found at i:49975309 original size:24 final size:26
Alignment explanation
Indices: 49975264--49975311 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
49975254 TTAATACATG
49975264 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
49975290 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
49975312 CGTATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Found at i:49982925 original size:11 final size:11
Alignment explanation
Indices: 49982909--49982949 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
49982899 ATGAAAAGAG
49982909 AAAAAAACAAA
1 AAAAAAACAAA
49982920 AAAAAAACAAA
1 AAAAAAACAAA
49982931 ACAAAAAA-ATAA
1 A-AAAAAACA-AA
49982943 AAAAAAA
1 AAAAAAA
49982950 GAGAGATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.90, C:0.07, G:0.00, T:0.02
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:49985247 original size:71 final size:71
Alignment explanation
Indices: 49985146--49985283 Score: 240
Period size: 71 Copynumber: 1.9 Consensus size: 71
49985136 GTGTTTTAAT
*
49985146 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
49985211 TTATCA
66 TTATCA
* * *
49985217 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
49985282 TT
66 TT
49985284 CTGCTCAATT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
TTATCA
Found at i:49985361 original size:84 final size:82
Alignment explanation
Indices: 49985220--49985520 Score: 354
Period size: 74 Copynumber: 3.7 Consensus size: 82
49985210 TTTATCATCA
* *
49985220 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTT-
49985285 TGCTCAATTTATGTTTTTC
65 TG-TCAATTTATGTTTTTC
*
49985304 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA--TT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTT
49985367 -TC------TGTTTTTC
66 GTCAATTTATGTTTTTC
** * *
49985377 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAA--T
*
49985442 TTGTGTTTTAATTTATG--TTTC
63 TT-TG--TCAATTTATGTTTTTC
* **
49985463 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTT
49985521 ATCATAAAAA
Statistics
Matches: 189, Mismatches: 13, Indels: 29
0.82 0.06 0.13
Matches are distributed among these distances:
73 8 0.04
74 58 0.31
78 1 0.01
79 3 0.02
81 1 0.01
82 2 0.01
84 58 0.31
85 52 0.28
86 4 0.02
88 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (82 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTT
GTCAATTTATGTTTTTC
Found at i:49985524 original size:308 final size:305
Alignment explanation
Indices: 49984976--49986453 Score: 1428
Period size: 308 Copynumber: 4.7 Consensus size: 305
49984966 TGAGGTATTT
* * * *
49984976 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCT-TGGCTCACAC
1 TCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACAC
* *
49985040 GCTGAGGTATTTTTAATTTCTGTTTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
62 GCTGAGGTATTTTCAATTTCTG-TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
** *
49985105 CTCGGGGTGCGCTGAGGTATTGTCAATTTTTGTGTTTTAATTCA-----AAAAATCAACTCATAT
126 CTCGGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATTTTCAAAAATCAACTCATAT
* * * *
49985165 TGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTTATCATCAAAAAATCAAC
191 TGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTT--A--TCT-ATCAAAAAATCAAC
*
49985230 TCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTCAATTTCTGC
251 TCATATTGCGAGAGGTGAGTTGAGCCTC--GGCCCGTTGAGGTATTTTCAA-TTCTGC
49985288 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
49985353 AGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
66 AGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
49985418 GGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATGTTTCAAAAATCAACTCATATTGCG
131 GGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTAT-TTTCAAAAATCAACTCATATTGCG
* * *
49985483 AGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTATC-ATAAAAAAAATCAACTCATATTG
195 AGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTATCTAT-CAAAAAATCAACTCATATTG
* *** **
49985547 CGAGAGGTGAGTTGAGCCTTCTG--C-TTTTCG-A-TTTC--TTCTTT
259 CGAGAGGTGAGTTGAGCC-TCGGCCCGTTGAGGTATTTTCAATTCTGC
* * *
49985588 TCAATTTATATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCT
1 TCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* * * *
49985653 GAGGTAATTTCAATTTCTGTTTTCTTCAATTTATGTTTTTCAAAAACCAGCTCATATTGCGAAAG
65 GAGGTATTTTCAATTTCTG-TTT-TTC-----A--------AAAAATCAACTCATATTGCGAGAG
* * * * *** *
49985718 GTGAGTTGAGCCCCGGGTCACACGCTGAGGTAATCTCAATTTCCAT-TTGTCAATTTATTTTTCA
115 GTGAGTTGAGCCTCGGG--GCACGCTGAGGTATTGTCAATTTTTGTGTT-TTAATTTA-TTTTCA
* * * *
49985782 AAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAATTTCTG
176 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTT-A--TC--
* * *
49985847 TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGTTGAGGTATTGT
236 --TATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GGCCCGTTGAGGTATTTT
* * *
49985911 AAATTTTTGTGTT
297 CAA---TTCTG-C
*
49985924 TCAATTTATGTTTTTCAAAAATCAACTTATATTGCGAGA---G-G-T--G----A-GACACGCTG
1 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
*
49985977 AGGTATTTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 AGGTA-TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
49986041 GGGCACGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTATGTTTTTTAAAAATCAACTCATATT
130 GGGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTA---TTTTCAAAAATCAACTCATATT
** *
49986106 GCGAGAGGTGAGTTGAGCCTCGGGACATACTGAGGTAATTGCAATT-TCTATTGTCAAAAAAATC
192 GCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGT-ATT----TTATCTA---TC-AAAAAATC
* * * *
49986170 AATTCATATTGCAAGAAGTGAGTTGAGCTTCGGCTCACGTGCTGAGGTATTTTCAATT-T-C
248 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-C-CGT--TGAGGTATTTTCAATTCTGC
* * *
49986230 T--ATTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTG
1 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
* * *
49986292 AGGTAATTTCAATTTCTGTTTTTC-AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGG
66 AGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* **** *
49986356 GGCACGCTGAGGAATTGTCAATTTTTGTGTTTTAATTTCA-AAAAAAAAATCAACTTATATTGCG
131 GGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTT-ATTTTCAAAAATCAACTCATATTGCG
* * *
49986420 AGAGGTGAGTTGAGCCTCAGGAGACGCTGAGGTA
195 AGAGGTGAGTTGAGCCTCAAGACACACTGAGGTA
49986454 CTTTCGATTT
Statistics
Matches: 985, Mismatches: 100, Indels: 164
0.79 0.08 0.13
Matches are distributed among these distances:
300 18 0.02
301 65 0.07
302 3 0.00
303 28 0.03
304 12 0.01
305 4 0.00
306 32 0.03
307 3 0.00
308 182 0.18
309 69 0.07
310 42 0.04
311 83 0.08
312 30 0.03
313 2 0.00
314 149 0.15
315 14 0.01
316 37 0.04
317 2 0.00
318 84 0.09
319 2 0.00
321 2 0.00
322 3 0.00
323 18 0.02
324 48 0.05
325 1 0.00
326 1 0.00
327 1 0.00
328 4 0.00
329 1 0.00
330 3 0.00
331 1 0.00
332 1 0.00
335 25 0.03
336 15 0.02
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (305 bp):
TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
GGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATTTTCAAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTATCTATCAAAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCGGCCCGTTGAGGTATTTTCAATTCTGC
Found at i:49985682 original size:16 final size:16
Alignment explanation
Indices: 49985661--49985691 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49985651 CTGAGGTAAT
*
49985661 TTCAATTTCTGTTTTC
1 TTCAATTTATGTTTTC
49985677 TTCAATTTATGTTTT
1 TTCAATTTATGTTTT
49985692 TCAAAAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.13, G:0.06, T:0.65
Consensus pattern (16 bp):
TTCAATTTATGTTTTC
Found at i:49985771 original size:89 final size:88
Alignment explanation
Indices: 49985588--49985834 Score: 320
Period size: 89 Copynumber: 2.8 Consensus size: 88
49985578 TTTCTTCTTT
* * *
49985588 TCAATTTATATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCT
1 TCAATTTAT-TTTTTC-AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* ** *
49985653 GAGGTAATTTCAATTTCTGTTTTCT
64 GAGGTAATCTCAATTTCTCATTTCG
* * * *
49985678 TCAATTTATGTTTTTCAAAAACCAGCTCATATTGCGAAAGGTGAGTTGAGCCCCGGGTCACACGC
1 TCAATTTAT-TTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGC
49985743 TGAGGTAATCTCAATTTC-CATTT-G
63 TGAGGTAATCTCAATTTCTCATTTCG
*
49985767 TCAATTTA-TTTTTCAAAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 TCAATTTATTTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
49985831 GGTA
66 GGTA
49985835 TTTTAATTTC
Statistics
Matches: 138, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
85 13 0.09
87 42 0.30
89 44 0.32
90 17 0.12
91 22 0.16
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (88 bp):
TCAATTTATTTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
GGTAATCTCAATTTCTCATTTCG
Found at i:49985807 original size:87 final size:82
Alignment explanation
Indices: 49985585--49986491 Score: 428
Period size: 87 Copynumber: 11.3 Consensus size: 82
49985575 CGATTTCTTC
*
49985585 TTTTCAATTTATATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
1 TTTTCAATTTAT-TTT-TC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
49985650 GCTGAGGTAATTTCAATTTCTGTT
63 GCTGAGGTAA-TTCAATTTC---A
* * * * *
49985674 TTCTTCAATTTATGTTTTTCAAAAACCAGCTCATATTGCGAAAGGTGAGTTGAGCCCCGGGTCAC
1 TT-TTCAATTTA--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--AC
49985739 ACGCTGAGGTAATCTCAATTTCCA
61 ACGCTGAGGTAAT-TCAATTT-CA
* *
49985763 TTTGTCAATTTATTTTTCAAAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTT-TCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
49985828 TGAGGT-A-T---TTT-A
65 TGAGGTAATTCAATTTCA
* * * * *
49985840 ATTTC----TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGTT
1 TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* * **
49985901 GAGGTATTGTAAATTTTTG
66 GAGGTAAT-TCAA-TTTCA
*
49985920 TGTTTCAATTTATGTTTTTCAAAAATCAACTTATATTGCGAGA---G-G-T--G----A-GACAC
1 T-TTTCAATTTA--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* * *
49985973 GCTGAGGTATTTTTAAATTTCTGT
63 GCTGAGGTA--ATTCAATTTC--A
* *
49985997 TTTTCAA---A---------AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* **
49986050 GAGGTATTGTCAATTTTTG
66 GAGGTAAT-TCAA-TTTCA
* * *
49986069 TGTTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAT
1 T-TTTCAATTTA--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
49986134 ACTGAGGTAATTGCAATTTCTA
63 GCTGAGGTAATT-CAATTTC-A
* * * * * *
49986156 TTGTC-A---A------AAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCTTC-GGCTCACGT
1 TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--
*
49986210 GCTGAGGTATTTTCAATTTC-
63 GCTGAGGTA-ATTCAATTTCA
* * *
49986230 TATTTC----TGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
1 T-TTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
49986290 TGAGG----T-AATTTCA
65 TGAGGTAATTCAATTTCA
* * * ** *
49986303 ATTTC----TGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGGGCACGCT
1 TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
**
49986364 GAGG-AATTGTCAATTTTTG
66 GAGGTAA-T-TCAA-TTTCA
* **** * *
49986383 TGTTTTAATTTCA--AAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGAGACG
1 T-TTTCAATTT-ATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* * *
49986446 CTGAGGTACTTTCGATTTCCGT
64 CTGAGGTA-ATTCAATTT-C-A
49986468 TTTTCAATTTATGTTTTTCAAAAA
1 TTTTCAATTTA--TTTTTCAAAAA
49986492 AAAAATTAAA
Statistics
Matches: 635, Mismatches: 89, Indels: 190
0.69 0.10 0.21
Matches are distributed among these distances:
62 19 0.03
65 1 0.00
66 1 0.00
67 1 0.00
69 1 0.00
72 75 0.12
73 59 0.09
74 53 0.08
75 19 0.03
76 28 0.04
77 8 0.01
78 8 0.01
79 8 0.01
80 39 0.06
81 9 0.01
82 3 0.00
83 5 0.01
84 59 0.09
85 18 0.03
86 7 0.01
87 128 0.20
88 1 0.00
89 48 0.08
90 12 0.02
91 23 0.04
92 2 0.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.35
Consensus pattern (82 bp):
TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTAATTCAATTTCA
Found at i:49985904 original size:72 final size:73
Alignment explanation
Indices: 49985775--49985927 Score: 227
Period size: 72 Copynumber: 2.1 Consensus size: 73
49985765 TGTCAATTTA
* *
49985775 TTTTTCAAAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT-TT
1 TTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTA
49985839 AATTTCTG
66 AATTTCTG
* * * *
49985847 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGTTGAGGTATTGTA
1 TTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTA
*
49985912 AATTTTTG
66 AATTTCTG
*
49985920 TGTTTCAA
1 TTTTTCAA
49985928 TTTATGTTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
72 57 0.79
73 15 0.21
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.35
Consensus pattern (73 bp):
TTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTA
AATTTCTG
Found at i:49986025 original size:149 final size:147
Alignment explanation
Indices: 49985821--49986393 Score: 554
Period size: 149 Copynumber: 3.7 Consensus size: 147
49985811 TGAGCCTCAG
49985821 GACACGCTGAGGTATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 GACACGCTGAGGTATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
49985886 GCCTCGGGGCACGTTGAGGTATTGTAAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACT
66 GCCTCGGGGCACGCTGAGGTATTGTAAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACT
*
49985951 TATATTGCGAGAGGTGA
131 CATATTGCGAGAGGTGA
49985968 GACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 GACACGCTGAGGTA-TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
49986033 GAGCCTCGGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTATGTTTTTTAAAAATCAA
64 GAGCCTCGGGGCACGCTGAGGTATTGTAAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAA
49986098 CTCATATTGCGAGAGGTGA
129 CTCATATTGCGAGAGGTGA
* ** * * *
49986117 GTTGAGCCTCGGGACATACTGAGGTAATTGCAATTTCT-ATTGTCAAAAAAATCAATTCATATTG
1 ---GA----C---AC--GCTGAGGT-ATTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTG
* * * ** * * * *
49986181 CAAGAAGTGAGTTGAGCTTCGGCTCACGTGCTGAGGTATTTTCAA--------TTTCTATTTCTG
51 CGAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGGTATTGTAAATTTTTGTGTTTCAATTTATG
*
49986238 TTTGTC-AAAATCAACTCATATTGCGAGAGGTGA
114 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
* *
49986271 GTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCA
1 ---GA----C---AC--GCTGAGGT-ATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCG
* * * *
49986336 AGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGAATTGTCAATTTTTGTGTTTTAATTT
53 AGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTAAATTTTTGTGTTTCAATTT
49986394 CAAAAAAAAA
Statistics
Matches: 363, Mismatches: 35, Indels: 44
0.82 0.08 0.10
Matches are distributed among these distances:
147 14 0.04
148 4 0.01
149 125 0.34
151 14 0.04
152 2 0.01
153 39 0.11
154 62 0.17
155 18 0.05
156 1 0.00
159 13 0.04
160 7 0.02
161 48 0.13
162 1 0.00
163 15 0.04
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.36
Consensus pattern (147 bp):
GACACGCTGAGGTATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCGGGGCACGCTGAGGTATTGTAAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACT
CATATTGCGAGAGGTGA
Found at i:49986340 original size:73 final size:73
Alignment explanation
Indices: 49986071--49986474 Score: 339
Period size: 73 Copynumber: 5.3 Consensus size: 73
49986061 AATTTTTGTG
* * * *
49986071 TTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATAC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
49986136 TGAGGTAA
66 TGAGGTAA
* * * * * * *
49986144 TTGCAATTTCT-ATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCTTC-GGCTCA
1 TTTCAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---A
*
49986207 CGTGCTGAGGTATTTTCAA
61 CATGCTGAGG-----T-AA
* *
49986226 TTTCTATTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
49986290 TGAGGTAA
66 TGAGGTAA
* ** * *
49986298 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGGGCACGC
1 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
49986363 TGAGG-AA
66 TGAGGTAA
* *
49986370 TTGTCAATTTTTGTGTTTTAATTTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGC
1 TT-TCAA--TTTCTG--TT--TTTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * *
49986435 CTCAGGAGACGCTGAGGTAC
54 CTCAGGACATGCTGAGGTAA
* *
49986455 TTTCGATTTCCGTTTTTCAA
1 TTTCAATTTCTGTTTTTCAA
49986475 TTTATGTTTT
Statistics
Matches: 267, Mismatches: 37, Indels: 54
0.75 0.10 0.15
Matches are distributed among these distances:
72 25 0.09
73 64 0.24
74 34 0.13
75 5 0.02
76 9 0.03
77 2 0.01
78 14 0.05
79 4 0.01
80 35 0.13
81 3 0.01
82 15 0.06
83 5 0.02
84 49 0.18
85 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (73 bp):
TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
TGAGGTAA
Found at i:49986477 original size:84 final size:84
Alignment explanation
Indices: 49986316--49986477 Score: 204
Period size: 84 Copynumber: 1.9 Consensus size: 84
49986306 TCTGTTTTTC
* * *
49986316 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGAATTGTCAATTTT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTAGGAGCACGCTGAGGAATTGTCAATTTC
*
49986381 TGTGTTTTAATTTCAAAAA
66 CGTGTTTTAATTTCAAAAA
* * * *
49986400 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGAG-ACGCTGAGGTACTT-TCGATT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT-AGGAGCACGCTGAGG-AATTGTCAATT
49986463 TCCGT-TTTTCAATTT
64 TCCGTGTTTT-AATTT
49986478 ATGTTTTTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
83 4 0.06
84 57 0.85
85 6 0.09
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (84 bp):
AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTAGGAGCACGCTGAGGAATTGTCAATTTC
CGTGTTTTAATTTCAAAAA
Found at i:49986646 original size:86 final size:87
Alignment explanation
Indices: 49986501--49986734 Score: 281
Period size: 88 Copynumber: 2.7 Consensus size: 87
49986491 AAAAAATTAA
* * * * * * * *
49986501 AAAAATCAATTCATGTTACTAGAGATGAGTTGAGCTTCGGGTCACATGCCGAGGTATTTTGAAAT
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAAA
* * *
49986566 TATATTT-TAATTTCTGTTTTC
66 TATATTTGCAAATTCTATTTTC
*
49986587 AAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAAA
*
49986652 TCTATTTGGCAAATTCTATTTTC
66 TATATTT-GCAAATTCTATTTTC
* * ** * *
49986675 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTCACATGCTGAGCTATTTT
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTT
49986735 TCAATTTCTC
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
86 62 0.49
88 64 0.51
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (87 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAAA
TATATTTGCAAATTCTATTTTC
Found at i:49987781 original size:23 final size:24
Alignment explanation
Indices: 49987745--49987804 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
49987735 TGCATTTTTT
*
49987745 TCTTTTTTC-CTCTTCTTTCG-AA
1 TCTTTTTTCTTTCTTCTTTCGTAA
* * *
49987767 TCTTTTTTCTTTCTTTTTTTGTTA
1 TCTTTTTTCTTTCTTCTTTCGTAA
49987791 T-TTTTTTCTTTCTT
1 TCTTTTTTCTTTCTT
49987805 TATATATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 9 0.28
23 21 0.66
24 2 0.06
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.73
Consensus pattern (24 bp):
TCTTTTTTCTTTCTTCTTTCGTAA
Found at i:49988885 original size:24 final size:26
Alignment explanation
Indices: 49988840--49988887 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
49988830 TTAATACATG
49988840 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
49988866 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
49988888 CGTATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Found at i:49996493 original size:1 final size:1
Alignment explanation
Indices: 49996487--49996526 Score: 53
Period size: 1 Copynumber: 40.0 Consensus size: 1
49996477 ATGAAAAGAG
* * *
49996487 AAAAAAAAAAAAAAAACAAAACAAAAAAATAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
49996527 GAGAGATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.93, C:0.05, G:0.00, T:0.03
Consensus pattern (1 bp):
A
Found at i:49997132 original size:11 final size:11
Alignment explanation
Indices: 49997108--49997141 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
49997098 TCATTCATTC
49997108 AAAAGAAA-AA
1 AAAAGAAAGAA
*
49997118 AAAATAAAGAA
1 AAAAGAAAGAA
49997129 AAAAGAAAGAA
1 AAAAGAAAGAA
49997140 AA
1 AA
49997142 GAAAATGGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (11 bp):
AAAAGAAAGAA
Found at i:49998749 original size:79 final size:77
Alignment explanation
Indices: 49998504--50000049 Score: 968
Period size: 74 Copynumber: 19.8 Consensus size: 77
49998494 TTCAAAATTT
* ** *
49998504 AACTCATATTACGAGAAATGAGTTGAGCCTTAGGACACGCTGAGGTATTTTCAATTTCTG--TTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
49998567 -TTCAAAAAAATC
66 ATTC-AAAAAATC
* * * *
49998579 AACTCATATTACAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTTAATTTCTGTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAATTTCTGTT
49998643 TTT-TT-AAAAAATC
63 TTTATTCAAAAAATC
* *** * *
49998656 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTGCGCTGAGGTATTGTCAATTTTTGTGTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT-TTT
49998721 TAATTCAAAAAATC
65 T-ATTCAAAAAATC
* * * ** * *
49998735 AACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAA----T-TTATC
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
49998795 A-TCAAAAAATC
66 ATTCAAAAAATC
* * *
49998806 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTCAATTTCTGCTCAA
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG-----
*
49998871 TTTATGTTTTTC-AAAAATC
61 -TT-T-TTATTCAAAAAATC
49998890 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG--TTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
49998953 -TTCAAAAAATC
66 ATTCAAAAAATC
* * * *
49998964 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTTTTGTGTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT-TTT
*
49999029 TAATTTATGTTTCAAAAATC
65 T-ATTCA------AAAAATC
* * **
49999049 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTT--A--TC-------
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
**
49999103 ATAAAAAAAATC
66 ATTCAAAAAATC
* **** * **** * * *
49999115 AACTCATATTGCGAGAGGTGAGTTGAGCCTTCTGCTTTTCGATTTCTTCTTTTCAA-TT-TATAT
1 AACTCATATTGCGAGAGGTGAGTTGAGCC-TCAG-GACACGCTGAGGTATTTTCAATTTCTGTTT
*
49999178 TT-GTCAAAAAATC
64 TTATTCAAAAAATC
* *
49999191 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTC
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTG-TTT-
* *
49999256 TTCAATTTATGTTTTTCAAAAACC
64 TT--ATTCA--------AAAAATC
* * * * * *
49999280 AGCTCATATTGCGAAAGGTGAGTTGAGCCCCGGGTCACACGCTGAGGTAATCTCAATTTCCATTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAATTT-C---T
* *
49999345 GTCAATTTATTTTTC-AAAAACC
60 G----TTT-TTATTCAAAAAATC
*
49999367 AACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTT-AATTTCTG--TTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
49999429 -TTC-AAAAATC
66 ATTCAAAAAATC
* * * * * *
49999439 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGTTGAGGTATTGTAAATTTTTGTGTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA--TTTCTG-TT
49999504 CAATTTATGTTTTTC-AAAAATC
63 ---TTTA-----TTCAAAAAATC
* *
49999526 AACTTATATTGCGAGA---G-G-T--G----A-GACACGCTGAGGTATTTTTAAATTTCTG--TT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTTCTGTTTT
49999577 T-TTC-AAAAATC
65 TATTCAAAAAATC
* * * *
49999588 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTTTTGTGTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAA--TTTCTG-TT
**
49999653 CAATTTATGTTTTTTAAAAATC
63 ---TTTA----TTCAAAAAATC
* ** * * * * *
49999675 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATACTGAGGTAATTGCAATTTCTATTGTC
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
49999740 A---AAAAAATC
66 ATTCAAAAAATC
* * * * * *
49999749 AATTCATATTGCAAGAAGTGAGTTGAGCTTC-GGCTCACGTGCTGAGGTATTTTCAATTTCTATT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--GCTGAGGTATTTTCAATTTCTGTT
*
49999813 TCTGTTTGTC--AAAATC
63 T-T-TAT-TCAAAAAATC
* *
49999829 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTG--TTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
49999892 -TTC-AAAAATC
66 ATTCAAAAAATC
* ** * * * *
49999902 AACTCATATTGCAAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGAATTGTCAATTTTTGTGTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGT-TTT
49999967 TAATTTCAAAAAAAAATC
65 T-A-TTC---AAAAAATC
* * * * *
49999985 AACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGAGACGCTGAGGTACTTTCGATTTCCGTTTTT
1 AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
50000050 CAATTTATGT
Statistics
Matches: 1165, Mismatches: 171, Indels: 263
0.73 0.11 0.16
Matches are distributed among these distances:
62 25 0.02
65 1 0.00
66 37 0.03
67 3 0.00
68 11 0.01
69 1 0.00
70 1 0.00
71 61 0.05
72 61 0.05
73 74 0.06
74 133 0.11
75 79 0.07
76 73 0.06
77 67 0.06
78 26 0.02
79 64 0.05
80 38 0.03
81 13 0.01
82 7 0.01
83 59 0.05
84 73 0.06
85 73 0.06
86 2 0.00
87 116 0.10
89 36 0.03
91 21 0.02
92 1 0.00
95 2 0.00
96 2 0.00
98 5 0.00
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (77 bp):
AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTT
ATTCAAAAAATC
Found at i:49998826 original size:71 final size:71
Alignment explanation
Indices: 49998725--49998862 Score: 240
Period size: 71 Copynumber: 1.9 Consensus size: 71
49998715 GTGTTTTAAT
*
49998725 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
49998790 TTATCA
66 TTATCA
* * *
49998796 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
49998861 TT
66 TT
49998863 CTGCTCAATT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTGAGGTATTTTCAAT
TTATCA
Found at i:49999103 original size:308 final size:305
Alignment explanation
Indices: 49998554--50000031 Score: 1421
Period size: 308 Copynumber: 4.7 Consensus size: 305
49998544 TGAGGTATTT
* * * *
49998554 TCAATTTCTGTTTTTCAAAAAAATCAACTCATATTACAAGAGGTGAGTTGAGCCT-TGGCTCACA
1 TCAATTTATGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACA
* *
49998618 CGCTGAGGTATTTTTAATTTCTGTTTTTTTAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
61 CGCTGAGGTATTTTCAATTTCTG-TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
** *
49998683 CCTCGGGGTGCGCTGAGGTATTGTCAATTTTTGTGTTTTAATTCA-----AAAAATCAACTCATA
125 CCTCGGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATTTTCAAAAATCAACTCATA
* * * *
49998743 TTGCGAGAGGTGAGTTGAACCTCAAGTCACATTGAGGTATTTTCAATTTATCATCAAAAAATCAA
190 TTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTT--A--TCT-ATCAAAAAATCAA
*
49998808 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACCCGTTGAGGTATTTTCAATTTCTGC
250 CTCATATTGCGAGAGGTGAGTTGAGCCTC--GGCCCGTTGAGGTATTTTCAA-TTCTGC
49998867 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
1 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
49998932 AGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
66 AGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
49998997 GGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATGTTTCAAAAATCAACTCATATTGCG
131 GGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTAT-TTTCAAAAATCAACTCATATTGCG
* * *
49999062 AGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTATC-ATAAAAAAAATCAACTCATATTG
195 AGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTATCTAT-CAAAAAATCAACTCATATTG
* *** **
49999126 CGAGAGGTGAGTTGAGCCTTCTG--C-TTTTCG-A-TTTC--TTCTTT
259 CGAGAGGTGAGTTGAGCC-TCGGCCCGTTGAGGTATTTTCAATTCTGC
* * *
49999167 TCAATTTATATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCT
1 TCAATTTATGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* * * *
49999232 GAGGTAATTTCAATTTCTGTTTTCTTCAATTTATGTTTTTCAAAAACCAGCTCATATTGCGAAAG
65 GAGGTATTTTCAATTTCTG-TTT-TTC-----A--------AAAAATCAACTCATATTGCGAGAG
* * * * *** *
49999297 GTGAGTTGAGCCCCGGGTCACACGCTGAGGTAATCTCAATTTCCAT-TTGTCAATTTATTTTTCA
115 GTGAGTTGAGCCTCGGG--GCACGCTGAGGTATTGTCAATTTTTGTGTT-TTAATTTA-TTTTCA
* * * *
49999361 AAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTAATTTCTG
176 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTT-A--TC--
* * *
49999426 TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGTTGAGGTATTGT
236 --TATCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--GGCCCGTTGAGGTATTTT
* * *
49999490 AAATTTTTGTGTT
297 CAA---TTCTG-C
*
49999503 TCAATTTATGTTTTTCAAAAATCAACTTATATTGCGAGA---G-G-T--G----A-GACACGCTG
1 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
*
49999556 AGGTATTTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
66 AGGTA-TTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
49999620 GGGCACGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTATGTTTTTTAAAAATCAACTCATATT
130 GGGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTA---TTTTCAAAAATCAACTCATATT
** *
49999685 GCGAGAGGTGAGTTGAGCCTCGGGACATACTGAGGTAATTGCAATT-TCTATTGTCAAAAAAATC
192 GCGAGAGGTGAGTTGAGCCTCAAGACACACTGAGGT-ATT----TTATCTA---TC-AAAAAATC
* * * *
49999749 AATTCATATTGCAAGAAGTGAGTTGAGCTTCGGCTCACGTGCTGAGGTATTTTCAATT-T-C
248 AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC-C-CGT--TGAGGTATTTTCAATTCTGC
* * *
49999809 T--ATTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTG
1 TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
* * *
49999871 AGGTAATTTCAATTTCTGTTTTTC-AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGG
66 AGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* *** *
49999935 GGCACGCTGAGGAATTGTCAATTTTTGTGTTTTAATTTCA--AAAAAAAATCAACTTATATTGCG
131 GGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTT-ATTTTCAAAAATCAACTCATATTGCG
* * *
49999998 AGAGGTGAGTTGAGCCTCAGGAGACGCTGAGGTA
195 AGAGGTGAGTTGAGCCTCAAGACACACTGAGGTA
50000032 CTTTCGATTT
Statistics
Matches: 985, Mismatches: 99, Indels: 166
0.79 0.08 0.13
Matches are distributed among these distances:
300 18 0.02
301 65 0.07
302 3 0.00
303 28 0.03
304 12 0.01
305 4 0.00
306 32 0.03
307 3 0.00
308 182 0.18
309 70 0.07
310 89 0.09
311 35 0.04
312 15 0.02
313 17 0.02
314 149 0.15
315 14 0.01
316 37 0.04
317 2 0.00
318 84 0.09
319 2 0.00
321 2 0.00
322 3 0.00
323 18 0.02
324 48 0.05
325 1 0.00
326 1 0.00
327 1 0.00
328 4 0.00
329 1 0.00
330 3 0.00
331 1 0.00
332 1 0.00
335 25 0.03
336 15 0.02
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (305 bp):
TCAATTTATGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
AGGTATTTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
GGCACGCTGAGGTATTGTCAATTTTTGTGTTTTAATTTATTTTCAAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCCTCAAGACACACTGAGGTATTTTATCTATCAAAAAATCAACTCATATTGCG
AGAGGTGAGTTGAGCCTCGGCCCGTTGAGGTATTTTCAATTCTGC
Found at i:49999261 original size:16 final size:16
Alignment explanation
Indices: 49999240--49999270 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49999230 CTGAGGTAAT
*
49999240 TTCAATTTCTGTTTTC
1 TTCAATTTATGTTTTC
49999256 TTCAATTTATGTTTT
1 TTCAATTTATGTTTT
49999271 TCAAAAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.13, G:0.06, T:0.65
Consensus pattern (16 bp):
TTCAATTTATGTTTTC
Found at i:49999350 original size:89 final size:88
Alignment explanation
Indices: 49999167--49999413 Score: 320
Period size: 89 Copynumber: 2.8 Consensus size: 88
49999157 TTTCTTCTTT
* * *
49999167 TCAATTTATATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCT
1 TCAATTTAT-TTTTTC-AAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* ** *
49999232 GAGGTAATTTCAATTTCTGTTTTCT
64 GAGGTAATCTCAATTTCTCATTTCG
* * * *
49999257 TCAATTTATGTTTTTCAAAAACCAGCTCATATTGCGAAAGGTGAGTTGAGCCCCGGGTCACACGC
1 TCAATTTAT-TTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACACGC
49999322 TGAGGTAATCTCAATTTC-CATTT-G
63 TGAGGTAATCTCAATTTCTCATTTCG
*
49999346 TCAATTTA-TTTTTCAAAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 TCAATTTATTTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
49999410 GGTA
66 GGTA
49999414 TTTTAATTTC
Statistics
Matches: 138, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
85 13 0.09
87 42 0.30
89 44 0.32
90 17 0.12
91 22 0.16
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (88 bp):
TCAATTTATTTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
GGTAATCTCAATTTCTCATTTCG
Found at i:49999386 original size:87 final size:82
Alignment explanation
Indices: 49999164--50000069 Score: 430
Period size: 87 Copynumber: 11.3 Consensus size: 82
49999154 CGATTTCTTC
*
49999164 TTTTCAATTTATATTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT
1 TTTTCAATTTAT-TTT-TC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
49999229 GCTGAGGTAATTTCAATTTCTGTT
63 GCTGAGGTAA-TTCAATTTC---A
* * * * *
49999253 TTCTTCAATTTATGTTTTTCAAAAACCAGCTCATATTGCGAAAGGTGAGTTGAGCCCCGGGTCAC
1 TT-TTCAATTTA--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--AC
49999318 ACGCTGAGGTAATCTCAATTTCCA
61 ACGCTGAGGTAAT-TCAATTT-CA
* *
49999342 TTTGTCAATTTATTTTTCAAAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTT-TCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
49999407 TGAGGT-A-T---TTT-A
65 TGAGGTAATTCAATTTCA
* * * * *
49999419 ATTTC----TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGTT
1 TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* * **
49999480 GAGGTATTGTAAATTTTTG
66 GAGGTAAT-TCAA-TTTCA
*
49999499 TGTTTCAATTTATGTTTTTCAAAAATCAACTTATATTGCGAGA---G-G-T--G----A-GACAC
1 T-TTTCAATTTA--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
* * *
49999552 GCTGAGGTATTTTTAAATTTCTGT
63 GCTGAGGTA--ATTCAATTTC--A
* *
49999576 TTTTCAA---A---------AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* **
49999629 GAGGTATTGTCAATTTTTG
66 GAGGTAAT-TCAA-TTTCA
* * *
49999648 TGTTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAT
1 T-TTTCAATTTA--TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
49999713 ACTGAGGTAATTGCAATTTCTA
63 GCTGAGGTAATT-CAATTTC-A
* * * * * *
49999735 TTGTC-A---A------AAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCTTC-GGCTCACGT
1 TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC--
*
49999789 GCTGAGGTATTTTCAATTTC-
63 GCTGAGGTA-ATTCAATTTCA
* * *
49999809 TATTTC----TGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
1 T-TTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
49999869 TGAGG----T-AATTTCA
65 TGAGGTAATTCAATTTCA
* * * ** *
49999882 ATTTC----TGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGGGCACGCT
1 TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
49999943 GAGG-AATTGTCAATTT--
66 GAGGTAA-T-TCAATTTCA
* ** * * *
49999959 TTGT-GTTTTA-ATTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGAGA
1 TTTTCAATTTATTTTTC----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * *
50000022 CGCTGAGGTACTTTCGATTTCCGT
62 CGCTGAGGTA-ATTCAATTT-C-A
50000046 TTTTCAATTTATGTTTTTCAAAAA
1 TTTTCAATTTA--TTTTTCAAAAA
50000070 AAAAATTAAA
Statistics
Matches: 639, Mismatches: 81, Indels: 196
0.70 0.09 0.21
Matches are distributed among these distances:
62 19 0.03
65 1 0.00
66 1 0.00
67 1 0.00
69 1 0.00
72 75 0.12
73 59 0.09
74 53 0.08
75 19 0.03
76 28 0.04
77 10 0.02
78 8 0.01
79 15 0.02
80 37 0.06
81 6 0.01
82 3 0.00
83 53 0.08
84 4 0.01
85 14 0.02
86 7 0.01
87 131 0.21
88 5 0.01
89 48 0.08
90 12 0.02
91 27 0.04
92 2 0.00
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.35
Consensus pattern (82 bp):
TTTTCAATTTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTAATTCAATTTCA
Found at i:49999483 original size:72 final size:73
Alignment explanation
Indices: 49999354--49999506 Score: 227
Period size: 72 Copynumber: 2.1 Consensus size: 73
49999344 TGTCAATTTA
* *
49999354 TTTTTCAAAAACCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATT-TT
1 TTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTA
49999418 AATTTCTG
66 AATTTCTG
* * * *
49999426 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGTTGAGGTATTGTA
1 TTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTA
*
49999491 AATTTTTG
66 AATTTCTG
*
49999499 TGTTTCAA
1 TTTTTCAA
49999507 TTTATGTTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
72 57 0.79
73 15 0.21
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.35
Consensus pattern (73 bp):
TTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTA
AATTTCTG
Found at i:49999604 original size:149 final size:147
Alignment explanation
Indices: 49999400--49999972 Score: 554
Period size: 149 Copynumber: 3.7 Consensus size: 147
49999390 TGAGCCTCAG
49999400 GACACGCTGAGGTATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 GACACGCTGAGGTATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
49999465 GCCTCGGGGCACGTTGAGGTATTGTAAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACT
66 GCCTCGGGGCACGCTGAGGTATTGTAAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACT
*
49999530 TATATTGCGAGAGGTGA
131 CATATTGCGAGAGGTGA
49999547 GACACGCTGAGGTATTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 GACACGCTGAGGTA-TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
49999612 GAGCCTCGGGGCACGCTGAGGTATTGTCAATTTTTGTGTTTCAATTTATGTTTTTTAAAAATCAA
64 GAGCCTCGGGGCACGCTGAGGTATTGTAAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAA
49999677 CTCATATTGCGAGAGGTGA
129 CTCATATTGCGAGAGGTGA
* ** * * *
49999696 GTTGAGCCTCGGGACATACTGAGGTAATTGCAATTTCT-ATTGTCAAAAAAATCAATTCATATTG
1 ---GA----C---AC--GCTGAGGT-ATTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTG
* * * ** * * * *
49999760 CAAGAAGTGAGTTGAGCTTCGGCTCACGTGCTGAGGTATTTTCAA--------TTTCTATTTCTG
51 CGAGAGGTGAGTTGAGCCTCGGGGCAC--GCTGAGGTATTGTAAATTTTTGTGTTTCAATTTATG
*
49999817 TTTGTC-AAAATCAACTCATATTGCGAGAGGTGA
114 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGA
* *
49999850 GTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCA
1 ---GA----C---AC--GCTGAGGT-ATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCG
* * * *
49999915 AGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGAATTGTCAATTTTTGTGTTTTAATTT
53 AGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTAAATTTTTGTGTTTCAATTT
49999973 CAAAAAAAAA
Statistics
Matches: 363, Mismatches: 35, Indels: 44
0.82 0.08 0.10
Matches are distributed among these distances:
147 14 0.04
148 4 0.01
149 125 0.34
151 14 0.04
152 2 0.01
153 39 0.11
154 62 0.17
155 18 0.05
156 1 0.00
159 13 0.04
160 7 0.02
161 48 0.13
162 1 0.00
163 15 0.04
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.36
Consensus pattern (147 bp):
GACACGCTGAGGTATTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCGGGGCACGCTGAGGTATTGTAAATTTTTGTGTTTCAATTTATGTTTTTCAAAAATCAACT
CATATTGCGAGAGGTGA
Found at i:49999850 original size:80 final size:73
Alignment explanation
Indices: 49999650--50000052 Score: 319
Period size: 73 Copynumber: 5.3 Consensus size: 73
49999640 AATTTTTGTG
* * * * * *
49999650 TTTCAATTTATGTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATAC
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGC
49999715 TGAGGTAA
66 TGAGGTAA
* * * * *
49999723 TTGCAATTTCT-ATTGTCAAAAAAATCAATTCATATTGCAAGAAGTGAGTTGAGCTTC-GGCTCA
1 TTTCAATTTCTGTTTGTC--AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG---A
*
49999786 CGTGCTGAGGTATTTTCAA
61 CATGCTGAGG-----T-AA
* *
49999805 TTTCTATTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGC
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGC
49999869 TGAGGTAA
66 TGAGGTAA
* ** * *
49999877 TTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGGGCACGC
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGC
49999942 TGAGG-AA
66 TGAGGTAA
* * * *
49999949 TTGTCAATTTTTGTGTTTTAATTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCC
1 TT-TCAA--TTTCTG--TT--TGTC----AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
* * *
50000014 TCAGGAGACGCTGAGGTAC
55 TCAGGACATGCTGAGGTAA
* * *
50000033 TTTCGATTTCCGTTTTTCAA
1 TTTCAATTTCTGTTTGTCAA
50000053 TTTATGTTTT
Statistics
Matches: 267, Mismatches: 37, Indels: 52
0.75 0.10 0.15
Matches are distributed among these distances:
72 25 0.09
73 64 0.24
74 34 0.13
75 5 0.02
76 9 0.03
77 6 0.02
78 10 0.04
79 6 0.02
80 33 0.12
81 7 0.03
82 11 0.04
83 54 0.20
84 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (73 bp):
TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACATGC
TGAGGTAA
Found at i:50000055 original size:83 final size:83
Alignment explanation
Indices: 49999895--50000055 Score: 202
Period size: 83 Copynumber: 1.9 Consensus size: 83
49999885 TCTGTTTTTC
* * *
49999895 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGAATTGTCAATTTT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTAGGAGCACGCTGAGGAATTGTCAATTTC
*
49999960 TGTGTTTTAATTTCAAAA
66 CGTGTTTTAATTTCAAAA
* * * *
49999978 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAGGAG-ACGCTGAGGTACTT-TCGATT
1 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT-AGGAGCACGCTGAGG-AATTGTCAATT
50000041 TCCGT-TTTTCAATTT
64 TCCGTGTTTT-AATTT
50000056 ATGTTTTTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
82 4 0.06
83 57 0.85
84 6 0.09
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (83 bp):
AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTAGGAGCACGCTGAGGAATTGTCAATTTC
CGTGTTTTAATTTCAAAA
Found at i:50000225 original size:86 final size:87
Alignment explanation
Indices: 50000080--50000313 Score: 281
Period size: 88 Copynumber: 2.7 Consensus size: 87
50000070 AAAAATTAAA
* * * * * * * *
50000080 AAAAATCAATTCATGTTACTAGAGATGAGTTGAGCTTCGGGTCACATGCCGAGGTATTTTGAAAT
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAAA
* * *
50000145 TATATTT-TAATTTCTGTTTTC
66 TATATTTGCAAATTCTATTTTC
*
50000166 AAAAATCGACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAAA
*
50000231 TCTATTTGGCAAATTCTATTTTC
66 TATATTT-GCAAATTCTATTTTC
* * ** * *
50000254 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTTGCTCACATGCTGAGCTATTTT
1 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTT
50000314 TCAATTTCTC
Statistics
Matches: 126, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
86 62 0.49
88 64 0.51
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (87 bp):
AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAAA
TATATTTGCAAATTCTATTTTC
Found at i:50001361 original size:23 final size:24
Alignment explanation
Indices: 50001325--50001384 Score: 63
Period size: 23 Copynumber: 2.6 Consensus size: 24
50001315 TGCATTTTTT
*
50001325 TCTTTTTTC-CTCTTCTTTCG-AA
1 TCTTTTTTCTTTCTTCTTTCGTAA
* * *
50001347 TCTTTTTTCTTTCTTTTTTTGTTA
1 TCTTTTTTCTTTCTTCTTTCGTAA
50001371 T-TTTTTTCTTTCTT
1 TCTTTTTTCTTTCTT
50001385 TATATATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 9 0.28
23 21 0.66
24 2 0.06
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.73
Consensus pattern (24 bp):
TCTTTTTTCTTTCTTCTTTCGTAA
Found at i:50001958 original size:3 final size:3
Alignment explanation
Indices: 50001950--50001975 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
50001940 CTACTTTAAT
50001950 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
50001976 CTTACTTCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:50002469 original size:24 final size:26
Alignment explanation
Indices: 50002424--50002471 Score: 66
Period size: 24 Copynumber: 1.9 Consensus size: 26
50002414 TTAATACATG
50002424 TTTTATATATGTATATATTATGTATA
1 TTTTATATATGTATATATTATGTATA
50002450 TTTTA-ATAT-TATAT-TATATGTA
1 TTTTATATATGTATATAT-TATGTA
50002472 CGTATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 1 0.05
24 11 0.52
25 4 0.19
26 5 0.24
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (26 bp):
TTTTATATATGTATATATTATGTATA
Found at i:50006371 original size:60 final size:60
Alignment explanation
Indices: 50006278--50006397 Score: 231
Period size: 60 Copynumber: 2.0 Consensus size: 60
50006268 CATTTTGGAG
50006278 ATAAATCTATTCAACTCCACCACCTTGCCCGTAAGGCGCTGGATTTCTTTTATAGTTCGC
1 ATAAATCTATTCAACTCCACCACCTTGCCCGTAAGGCGCTGGATTTCTTTTATAGTTCGC
*
50006338 ATAAATCTATTCAACTCCACCACCTTGCCCGTAAGGCGTTGGATTTCTTTTATAGTTCGC
1 ATAAATCTATTCAACTCCACCACCTTGCCCGTAAGGCGCTGGATTTCTTTTATAGTTCGC
50006398 GGTGGAGGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (60 bp):
ATAAATCTATTCAACTCCACCACCTTGCCCGTAAGGCGCTGGATTTCTTTTATAGTTCGC
Found at i:50014365 original size:20 final size:21
Alignment explanation
Indices: 50014332--50014375 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
50014322 TATTTCTTTT
50014332 ATTTTAGTGGTTA-TATTGTA
1 ATTTTAGTGGTTATTATTGTA
* * *
50014352 ATTTTGGTGTTTATTTTTGTA
1 ATTTTAGTGGTTATTATTGTA
50014373 ATT
1 ATT
50014376 ATGAACTACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.20, C:0.00, G:0.18, T:0.61
Consensus pattern (21 bp):
ATTTTAGTGGTTATTATTGTA
Found at i:50018740 original size:19 final size:19
Alignment explanation
Indices: 50018716--50018766 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
50018706 TAGGGTAATA
50018716 CGTTATAGATTTTTGTATT
1 CGTTATAGATTTTTGTATT
50018735 CGTTATAGATTTTTGTATT
1 CGTTATAGATTTTTGTATT
*
50018754 CATTATAGATTTT
1 CGTTATAGATTTT
50018767 ATTTCTTTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.24, C:0.06, G:0.14, T:0.57
Consensus pattern (19 bp):
CGTTATAGATTTTTGTATT
Found at i:50020900 original size:54 final size:54
Alignment explanation
Indices: 50020841--50020946 Score: 176
Period size: 54 Copynumber: 2.0 Consensus size: 54
50020831 ATTTTTGTGT
50020841 CAATTAAAGATTTTGTTATTCGATATTATTTTCTAAAATGTTATAGGAGTAACC
1 CAATTAAAGATTTTGTTATTCGATATTATTTTCTAAAATGTTATAGGAGTAACC
* * * *
50020895 CAATTAAAGATTTTGTTATTCGTTATTATTTTTTGAAATGTTATGGGAGTAA
1 CAATTAAAGATTTTGTTATTCGATATTATTTTCTAAAATGTTATAGGAGTAA
50020947 TCAATTCCAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (54 bp):
CAATTAAAGATTTTGTTATTCGATATTATTTTCTAAAATGTTATAGGAGTAACC
Found at i:50032180 original size:25 final size:25
Alignment explanation
Indices: 50032146--50032194 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
50032136 AGCACTCTCT
*
50032146 TGAGCCATGTAACAGGATGCTTATG
1 TGAGCCATGTAACAGGAAGCTTATG
*
50032171 TGAGCCATGTATCAGGAAGCTTAT
1 TGAGCCATGTAACAGGAAGCTTAT
50032195 CCGGGCTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (25 bp):
TGAGCCATGTAACAGGAAGCTTATG
Found at i:50034619 original size:16 final size:15
Alignment explanation
Indices: 50034600--50034645 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 15
50034590 TATTTTTAAA
50034600 AATTTTAATTCAAAAT
1 AATTTTAATT-AAAAT
50034616 AATTTATATATTAAAAT
1 AATTT-TA-ATTAAAAT
*
50034633 ATTTTTAATTAAA
1 AATTTTAATTAAA
50034646 TTTGGTTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 6 0.22
16 7 0.26
17 11 0.41
18 3 0.11
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (15 bp):
AATTTTAATTAAAAT
Found at i:50034633 original size:17 final size:15
Alignment explanation
Indices: 50034577--50034645 Score: 54
Period size: 14 Copynumber: 4.6 Consensus size: 15
50034567 ATATTAAATC
*
50034577 ATAATT-AAATAATT
1 ATAATTAAAATATTT
**
50034591 ATTTTTAAAA-ATTT
1 ATAATTAAAATATTT
50034605 -TAATTCAAAATAATTT
1 ATAATT-AAAAT-ATTT
50034621 ATATATTAAAATATTT
1 ATA-ATTAAAATATTT
*
50034637 TTAATTAAA
1 ATAATTAAA
50034646 TTTGGTTATA
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
13 3 0.07
14 11 0.26
15 9 0.21
16 10 0.23
17 7 0.16
18 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAATTAAAATATTT
Found at i:50034642 original size:33 final size:29
Alignment explanation
Indices: 50034583--50034642 Score: 75
Period size: 33 Copynumber: 1.9 Consensus size: 29
50034573 AATCATAATT
*
50034583 AAATAATTATTTTTAAAAATTTTAATTCA
1 AAATAATTATTATTAAAAATTTTAATTCA
50034612 AAATAATTTATATATTAAAATATTTTTAATT
1 AAATAA-TTAT-TATTAAAA-A-TTTTAATT
50034643 AAATTTGGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 6 0.23
30 4 0.15
31 7 0.27
32 1 0.04
33 8 0.31
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (29 bp):
AAATAATTATTATTAAAAATTTTAATTCA
Found at i:50035495 original size:14 final size:15
Alignment explanation
Indices: 50035464--50035500 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
50035454 ATAATTCTAG
50035464 TTTTTATTATCATAA
1 TTTTTATTATCATAA
50035479 TTTTTATGT-TCAT-A
1 TTTTTAT-TATCATAA
50035493 TTTTTATT
1 TTTTTATT
50035501 TTTAATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 1 0.05
14 8 0.38
15 11 0.52
16 1 0.05
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (15 bp):
TTTTTATTATCATAA
Found at i:50036742 original size:20 final size:20
Alignment explanation
Indices: 50036717--50036781 Score: 78
Period size: 20 Copynumber: 3.2 Consensus size: 20
50036707 TTATTTTGCA
**
50036717 ATAAAAATACATA-AGATTTT
1 ATAAAAATACATATA-AAATT
*
50036737 ATAAAAATATATATAAAATT
1 ATAAAAATACATATAAAATT
*
50036757 ATAAAAATACATACAAAATT
1 ATAAAAATACATATAAAATT
50036777 ATAAA
1 ATAAA
50036782 TAAATGAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
20 38 0.97
21 1 0.03
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (20 bp):
ATAAAAATACATATAAAATT
Found at i:50036749 original size:10 final size:10
Alignment explanation
Indices: 50036717--50036781 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
50036707 TTATTTTGCA
*
50036717 ATAAAAATAC
1 ATAAAAATAT
* * *
50036727 ATAAGATTTT
1 ATAAAAATAT
50036737 ATAAAAATAT
1 ATAAAAATAT
50036747 ATATAAAAT-T
1 ATA-AAAATAT
*
50036757 ATAAAAATAC
1 ATAAAAATAT
50036767 ATACAAAAT-T
1 ATA-AAAATAT
50036777 ATAAA
1 ATAAA
50036782 TAAATGAATA
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
9 7 0.16
10 26 0.60
11 10 0.23
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (10 bp):
ATAAAAATAT
Found at i:50036860 original size:17 final size:17
Alignment explanation
Indices: 50036840--50036874 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
50036830 AAAATAATAA
*
50036840 TTTTATAAATAAACCATT
1 TTTTA-AAAAAAACCATT
50036858 TTTTAAAAAAAACCATT
1 TTTTAAAAAAAACCATT
50036875 GATAAGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (17 bp):
TTTTAAAAAAAACCATT
Found at i:50039685 original size:25 final size:26
Alignment explanation
Indices: 50039639--50039687 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
50039629 ATGTTTTATT
* *
50039639 AATTTGGTAAATAGTATCTAAATATA
1 AATTTGATAAATAGAATCTAAATATA
*
50039665 AATTTGAT-AATAGAATTTAAATA
1 AATTTGATAAATAGAATCTAAATA
50039688 ATCGCATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.49, C:0.02, G:0.10, T:0.39
Consensus pattern (26 bp):
AATTTGATAAATAGAATCTAAATATA
Done.