Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 150 of 345
Found at i:50787267 original size:21 final size:22
Alignment explanation
Indices: 50787243--50787286 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
50787233 ATCCCCACAA
* *
50787243 GTGTATTGGTTGGTAT-GGATG
1 GTGTACTGGCTGGTATAGGATG
*
50787264 GTGTGCTGGCTGGTATAGGATG
1 GTGTACTGGCTGGTATAGGATG
50787286 G
1 G
50787287 GTTGCATCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.14, C:0.05, G:0.45, T:0.36
Consensus pattern (22 bp):
GTGTACTGGCTGGTATAGGATG
Found at i:50789106 original size:43 final size:45
Alignment explanation
Indices: 50789058--50789165 Score: 143
Period size: 44 Copynumber: 2.5 Consensus size: 45
50789048 ATTAAGGAGT
*
50789058 TGTGATTATGTGTAAGACCATGTCT-GGGACATTGGCATCATT-A
1 TGTGATTATGTGTAAGACCATGTCTACGGACATTGGCATCATTAA
* *
50789101 TGTGATTACGTGTAAGACCATGTCTACGGACATTGGCATCGTTAA
1 TGTGATTATGTGTAAGACCATGTCTACGGACATTGGCATCATTAA
*
50789146 T-TAATT-TCGTGTAAGACCAT
1 TGTGATTAT-GTGTAAGACCAT
50789166 AACTGGGCTA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
43 24 0.42
44 31 0.54
45 2 0.04
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (45 bp):
TGTGATTATGTGTAAGACCATGTCTACGGACATTGGCATCATTAA
Found at i:50805639 original size:43 final size:43
Alignment explanation
Indices: 50805592--50805703 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
50805582 TCGACACCAC
* * *
50805592 TGTCCCAGACAGGGTCTTACACGTAACCG-ATTAACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAACCGCAAT-ACAATGCCAA
*
50805635 TGTCCCAGACATGGTCTTACACGTAATCGCAATACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGTAACCGCAATACAATGCCAA
* * *
50805678 TGTCCTAGACATGGTTTTACATGTAA
1 TGTCCCAGACATGGTCTTACACGTAA
50805704 TCTCATCTCG
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
43 59 0.97
44 2 0.03
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGTAACCGCAATACAATGCCAA
Found at i:50808520 original size:13 final size:13
Alignment explanation
Indices: 50808502--50808528 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50808492 ATATATTATA
50808502 TGTGTGAAAATTT
1 TGTGTGAAAATTT
50808515 TGTGTGAAAATTT
1 TGTGTGAAAATTT
50808528 T
1 T
50808529 ATCATTTGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:50809703 original size:44 final size:43
Alignment explanation
Indices: 50809641--50809764 Score: 121
Period size: 44 Copynumber: 2.9 Consensus size: 43
50809631 AGGATTTCGA
* * *
50809641 TATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 TATGTGATTACATGTAAGACCACGTCTGGGAAGTTGGCATC-AT
* * *
50809685 T-TGTGATTTGCGTGTAAGACC-CTATCTGGGAAAG-TGGCATCAT
1 TATGTGA-TTACATGTAAGACCAC-GTCTGGG-AAGTTGGCATCAT
*
50809728 TATGTGATTACATGTAAGA-CACGTCTGGGATGTTGGC
1 TATGTGATTACATGTAAGACCACGTCTGGGAAGTTGGC
50809765 GTTGTACGAG
Statistics
Matches: 65, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
41 2 0.03
42 11 0.17
43 19 0.29
44 31 0.48
45 2 0.03
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
TATGTGATTACATGTAAGACCACGTCTGGGAAGTTGGCATCAT
Found at i:50811079 original size:46 final size:46
Alignment explanation
Indices: 50810983--50811203 Score: 211
Period size: 46 Copynumber: 4.8 Consensus size: 46
50810973 GTATATCTGT
* *
50810983 GCCGATGCCATGTCCCAGACATGGTCTTACACTAAC--ACATCTC-ATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTTACATCTCGA-G
*
50811029 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
* * * * *
50811075 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACT-CATCACAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TTACATCTCGAG
* * * * *
50811121 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-TATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TACAT-CTCGAG
50811169 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
50811204 CACAATAACC
Statistics
Matches: 146, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
44 12 0.08
45 14 0.10
46 70 0.48
47 29 0.20
48 21 0.14
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAG
Found at i:50811150 original size:94 final size:91
Alignment explanation
Indices: 50810983--50811207 Score: 262
Period size: 94 Copynumber: 2.4 Consensus size: 91
50810973 GTATATCTGT
*
50810983 GCCGATGCCATGTCCCAGACATGGTCTTACACTA--ACACATCTCATAGCCGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACACATCACATAGCCGATGCATGTCCCAG
*
50811046 ACATGTCTTACACTAG-CTTACGT-CTCGAG
64 ACATGTCTTACACTAGCCTTA--TAAT-GAG
* * *
50811075 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACTCATCACA-ATGCTGATGCCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACACATCACATA-GCCGATG-CATGTCCCAG
* *
50811139 ACATGGTCTTACACTGGCTCTTATAATGTG
64 ACAT-GTCTTACACTAGC-CTTATAATGAG
*
50811169 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACACA
50811208 ATAACCCATA
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
90 11 0.10
91 14 0.12
92 21 0.18
93 14 0.12
94 50 0.43
95 1 0.01
96 4 0.03
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (91 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACACATCACATAGCCGATGCATGTCCCAGAC
ATGTCTTACACTAGCCTTATAATGAG
Found at i:50817695 original size:46 final size:45
Alignment explanation
Indices: 50817585--50817754 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 45
50817575 GTGTATCTGT
*
50817585 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GAC-ACATCTCGTA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTAG-CTACGTCTCG-A
50817631 G-CGATGCATGTCCCAGACAT-GTCTTACACTAGCTTACGTCTCGA
1 GCCGATGCATGTCCCAGACATGGTCTTACACTAGC-TACGTCTCGA
* * *
50817675 GGCCGTTGCATGTCCCAGACAT-GTCTTACACTAGC-ACTCGTCACAA
1 -GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTA--CGTCTCGA
*
50817721 TACCGATGCCATGTCCCAGACATGGTCTTACACT
1 -GCCGATG-CATGTCCCAGACATGGTCTTACACT
50817755 GGCTCTCATA
Statistics
Matches: 108, Mismatches: 7, Indels: 16
0.82 0.05 0.12
Matches are distributed among these distances:
43 11 0.10
44 17 0.16
45 13 0.12
46 43 0.40
47 14 0.13
48 10 0.09
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTAGCTACGTCTCGA
Found at i:50820027 original size:25 final size:24
Alignment explanation
Indices: 50819999--50820049 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 24
50819989 TTAAATATAC
*
50819999 ATGATTAAATATA-AATATGTATTAA
1 ATGATAAAAT-TACAAT-TGTATTAA
50820024 ATGATAAAATTAGCAATTGTATTAA
1 ATGATAAAATTA-CAATTGTATTAA
50820049 A
1 A
50820050 ACTTCAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 2 0.09
25 18 0.78
26 3 0.13
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (24 bp):
ATGATAAAATTACAATTGTATTAA
Found at i:50823577 original size:27 final size:26
Alignment explanation
Indices: 50823560--50823629 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
50823550 ATATTAAGTC
50823560 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
50823587 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
50823615 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
50823630 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:50823623 original size:28 final size:28
Alignment explanation
Indices: 50823560--50823657 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
50823550 ATATTAAGTC
*
50823560 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50823587 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50823615 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50823644 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50823658 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50831850 original size:27 final size:26
Alignment explanation
Indices: 50831833--50831902 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
50831823 ATATTAAGTC
50831833 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
50831860 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
50831888 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
50831903 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:50831896 original size:28 final size:28
Alignment explanation
Indices: 50831833--50831930 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
50831823 ATATTAAGTC
*
50831833 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50831860 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
50831888 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
50831917 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50831931 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50833708 original size:79 final size:80
Alignment explanation
Indices: 50833609--50833776 Score: 189
Period size: 80 Copynumber: 2.1 Consensus size: 80
50833599 CTCGTTCAAG
* * ** * *
50833609 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATTC-AATGCCTTCAGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCAGGACTTAACCCGGA-A
*
50833672 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
50833688 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCAGGACTTAACCCGGAATT
50833753 AATAACTCGCACAAA
66 AATAACTCGCACAAA
*
50833768 TACCTTCGG
1 TGCCTTCGG
50833777 ATCTTAGTCC
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
79 32 0.43
80 42 0.57
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCAGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:50833760 original size:80 final size:80
Alignment explanation
Indices: 50833649--50833829 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
50833639 CTCATTCAAT
* * * *
50833649 GCCTTCAGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
50833712 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
50833728 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
50833792 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
50833809 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
50833830 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:50833789 original size:40 final size:40
Alignment explanation
Indices: 50833646--50833829 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
50833636 TAACTCATTC
* * *
50833646 AATGCCTTCAGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
50833686 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
50833726 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
50833766 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
50833807 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
50833830 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 102 0.84
41 11 0.09
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:50835553 original size:12 final size:12
Alignment explanation
Indices: 50835536--50835562 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
50835526 TGGGCATACT
50835536 TATGTATATATA
1 TATGTATATATA
50835548 TATGTATATATA
1 TATGTATATATA
50835560 TAT
1 TAT
50835563 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:50838601 original size:33 final size:33
Alignment explanation
Indices: 50838559--50838642 Score: 152
Period size: 33 Copynumber: 2.6 Consensus size: 33
50838549 TGGGTCCACA
50838559 TGCCCGTGTGGGCCCACACTCCCAAAGTCGCCT
1 TGCCCGTGTGGGCCCACACTCCCAAAGTCGCCT
50838592 TGCCCGTGTGGGCCCACACTCCCAAAGTCGCCT
1 TGCCCGTGTGGGCCCACACTCCCAAAGTCGCCT
*
50838625 TGCCCGTAT-GGCCCACAC
1 TGCCCGTGTGGGCCCACAC
50838643 GGCCACACAC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 9 0.18
33 41 0.82
ACGTcount: A:0.15, C:0.43, G:0.24, T:0.18
Consensus pattern (33 bp):
TGCCCGTGTGGGCCCACACTCCCAAAGTCGCCT
Found at i:50843722 original size:15 final size:15
Alignment explanation
Indices: 50843704--50843741 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
50843694 AATAATATCC
*
50843704 AATTCATGAATACGT
1 AATTCATGAATACAT
50843719 AATTCATGAATACAT
1 AATTCATGAATACAT
50843734 AATTCATG
1 AATTCATG
50843742 TGTCTCATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (15 bp):
AATTCATGAATACAT
Found at i:50848331 original size:34 final size:34
Alignment explanation
Indices: 50848288--50848355 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
50848278 GCATTTTTTA
* *
50848288 CACTGTACTGAGATGGGCTAAGGCCCAA-ACTGT
1 CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
*
50848321 CACTGATACTGAAAAGGGCTTAGGCCCAAGACTGT
1 CACTG-TACTGAAAAGGGCTAAGGCCCAAGACTGT
50848356 TTAACTCTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 5 0.17
34 20 0.67
35 5 0.17
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (34 bp):
CACTGTACTGAAAAGGGCTAAGGCCCAAGACTGT
Found at i:50854162 original size:23 final size:22
Alignment explanation
Indices: 50854112--50854173 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 22
50854102 ATTGTATTGT
50854112 AATATGCCACAAAGGCATTACA
1 AATATGCCACAAAGGCATTACA
**
50854134 AGATATGCCACAAAGGCATTTTA
1 A-ATATGCCACAAAGGCATTACA
*
50854157 GAATATGCTACAAAGGC
1 -AATATGCCACAAAGGC
50854174 TCTATTTGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
22 1 0.03
23 33 0.94
24 1 0.03
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (22 bp):
AATATGCCACAAAGGCATTACA
Found at i:50855761 original size:20 final size:20
Alignment explanation
Indices: 50855732--50855773 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
50855722 CCACCAGTAA
*
50855732 TGCAGATAAACTATCAATAT
1 TGCAGATAAACTACCAATAT
* *
50855752 TGCAGCTAAACTGCCAATAT
1 TGCAGATAAACTACCAATAT
50855772 TG
1 TG
50855774 TGGACAAGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (20 bp):
TGCAGATAAACTACCAATAT
Found at i:50858373 original size:55 final size:53
Alignment explanation
Indices: 50858240--50858437 Score: 184
Period size: 55 Copynumber: 3.7 Consensus size: 53
50858230 AACTTACCTT
*
50858240 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
* * * * *
50858293 TGCCATGCCTTGGCATCGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTCACCAA
* * * *
50858348 TGTCATGTCTTGACATGGTCTTACATGGTATCCTTGCGTTA-GAAACCTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTCACCAA
** * * * *
50858402 CTATCATGCCTTGGCATCGTCTTACATGGTATCCTT
1 -TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
50858438 AAACCGTAAT
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 38 0.31
54 8 0.07
55 71 0.59
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTCACCAA
Found at i:50860493 original size:24 final size:24
Alignment explanation
Indices: 50860447--50860491 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
50860437 AACCATTAGA
50860447 CTAACTCATTTACTTGTTAAAACT
1 CTAACTCATTTACTTGTTAAAACT
50860471 CTAACATCATTTA-TT-TTAAAA
1 CTAAC-TCATTTACTTGTTAAAA
50860492 ACATGATGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 6 0.30
24 7 0.35
25 7 0.35
ACGTcount: A:0.38, C:0.18, G:0.02, T:0.42
Consensus pattern (24 bp):
CTAACTCATTTACTTGTTAAAACT
Found at i:50861007 original size:52 final size:53
Alignment explanation
Indices: 50860929--50861034 Score: 196
Period size: 52 Copynumber: 2.0 Consensus size: 53
50860919 CCACATTTAC
*
50860929 TTATGCATACAACACAGCACACACTTAAACTCATGCAGATACTATAC-AAGGA
1 TTATGCATACAACACAGCACACACTTAAACTCATACAGATACTATACAAAGGA
50860981 TTATGCATACAACACAGCACACACTTAAACTCATACAGATACTATACAAAGGA
1 TTATGCATACAACACAGCACACACTTAAACTCATACAGATACTATACAAAGGA
50861034 T
1 T
50861035 CACACATATA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
52 46 0.88
53 6 0.12
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.22
Consensus pattern (53 bp):
TTATGCATACAACACAGCACACACTTAAACTCATACAGATACTATACAAAGGA
Found at i:50864646 original size:47 final size:48
Alignment explanation
Indices: 50864570--50864703 Score: 163
Period size: 47 Copynumber: 2.8 Consensus size: 48
50864560 TGTAACCCGC
50864570 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAA-CGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
* *
50864620 -C-TCACGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCAT
1 CCATAACGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
50864663 CCATAACTAAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 CCATAAC-GAACTCGGACTCAACTCAACGAGTTCGGATGCC
50864704 CAAACATCCT
Statistics
Matches: 73, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
42 2 0.03
43 4 0.05
44 2 0.03
45 3 0.04
46 28 0.38
47 30 0.41
48 2 0.03
49 2 0.03
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.21
Consensus pattern (48 bp):
CCATAACGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:50867080 original size:15 final size:15
Alignment explanation
Indices: 50867058--50867134 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
50867048 AAGAAACCGA
50867058 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
50867073 ATAGAGAAA-CC-AG
1 ATAAAGAAATCCAAG
50867086 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
50867101 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
50867117 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
50867132 ATA
1 ATA
50867135 CGATACTATG
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
13 2 0.04
14 10 0.19
15 39 0.75
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:50867091 original size:29 final size:29
Alignment explanation
Indices: 50867048--50867134 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
50867038 CAAAGATAAC
50867048 AAGAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCAGAATAAAGAAATCCAAGATA
*
50867076 GAGAAACCAGAATAAAGAAATCC-AGAATA
1 AAGAAACCAGAATAAAGAAATCCAAG-ATA
* * *
50867105 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCAGAATAAAGAAATCCAAGATA
50867135 CGATACTATG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
28 9 0.18
29 20 0.40
30 19 0.38
31 2 0.04
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCAGAATAAAGAAATCCAAGATA
Found at i:50870186 original size:92 final size:93
Alignment explanation
Indices: 50870059--50870229 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
50870049 GCCCATAAGT
* *
50870059 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50870124 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50870152 GAACTCGGAC-CAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50870216 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
50870230 CAACATCCTA
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 65 0.87
93 10 0.13
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50870225 original size:46 final size:46
Alignment explanation
Indices: 50870051--50870225 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
50870041 TGTAACCCGC
* * *
50870051 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50870097 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
50870147 -C-TCA-CGAACTCGGAC-CAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
50870189 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50870226 TGCCCAACAT
Statistics
Matches: 110, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
43 2 0.02
44 2 0.02
45 10 0.09
46 71 0.65
47 10 0.09
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50883549 original size:27 final size:27
Alignment explanation
Indices: 50883501--50883659 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
50883491 GCGAGGCTGC
* *
50883501 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
50883528 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
50883554 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
50883581 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
* *
50883608 CAGATATATATGGCAGAGCCACCAAAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
50883635 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
50883660 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 10 0.09
27 98 0.87
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:50883660 original size:54 final size:54
Alignment explanation
Indices: 50883519--50883662 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
50883509 GTGACGAAGT
* * *
50883519 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
50883573 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
*
50883627 CACCAAATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
50883663 GCTTCCTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATATGGCAGAGC
Found at i:50892081 original size:12 final size:12
Alignment explanation
Indices: 50892064--50892090 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
50892054 AATTCACATG
50892064 TAATTTCTAATA
1 TAATTTCTAATA
50892076 TAATTTCTAATA
1 TAATTTCTAATA
50892088 TAA
1 TAA
50892091 AATTAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATTTCTAATA
Found at i:50893218 original size:5 final size:5
Alignment explanation
Indices: 50893210--50893236 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
50893200 AAAATAAAAA
50893210 ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT AT
50893237 GGTTGGTATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:50893278 original size:14 final size:14
Alignment explanation
Indices: 50893261--50893287 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50893251 TAGGAAGGTC
50893261 ATATGAAAATTTTG
1 ATATGAAAATTTTG
50893275 ATATGAAAATTTT
1 ATATGAAAATTTT
50893288 ACCAATTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (14 bp):
ATATGAAAATTTTG
Found at i:50905067 original size:94 final size:92
Alignment explanation
Indices: 50904928--50905119 Score: 235
Period size: 91 Copynumber: 2.1 Consensus size: 92
50904918 TCTCATTCGA
*
50904928 CTCACCATCAGGAGGAAGTTTAAAAAATGCACCAAGTTCTCCAAAGTGAGACGAATAGGAGTATT
1 CTCACCATCAGGAGGAAGTTTAAAAAATACACCAAGTTCTCCAAAGTGAGACGAAT---AGTATT
* *
50904993 CATGAAAAAAGAATTAATAGCAACCATAGC
63 CATGAAAAAAGAATTAATAGCAACCACAAC
* * * * * * *
50905023 CTCACCA-CCGGAGGAAGTTT-CAAAATACACCATATTTTTTCAAAGTGATATGAATAGTATTCA
1 CTCACCATCAGGAGGAAGTTTAAAAAATACACCA-AGTTCTCCAAAGTGAGACGAATAGTATTCA
*
50905086 TGAGAAAAGAATTAATAGCAACCACAAC
65 TGAAAAAAGAATTAATAGCAACCACAAC
50905114 CTCACC
1 CTCACC
50905120 GGATTCATCA
Statistics
Matches: 85, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
91 39 0.46
93 10 0.12
94 29 0.34
95 7 0.08
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (92 bp):
CTCACCATCAGGAGGAAGTTTAAAAAATACACCAAGTTCTCCAAAGTGAGACGAATAGTATTCAT
GAAAAAAGAATTAATAGCAACCACAAC
Found at i:50907899 original size:14 final size:14
Alignment explanation
Indices: 50907880--50907906 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50907870 TTGAGACTCA
50907880 ATACATGAAATAAT
1 ATACATGAAATAAT
50907894 ATACATGAAATAA
1 ATACATGAAATAA
50907907 ATGCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.26
Consensus pattern (14 bp):
ATACATGAAATAAT
Found at i:50914680 original size:19 final size:21
Alignment explanation
Indices: 50914652--50914691 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
50914642 ATGAACTGTC
*
50914652 CAAAATATTTT-TAAG-TGTT
1 CAAAACATTTTCTAAGATGTT
50914671 CAAAACATTTTCTAAGATGTT
1 CAAAACATTTTCTAAGATGTT
50914692 TAGAAGTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 10 0.56
20 4 0.22
21 4 0.22
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (21 bp):
CAAAACATTTTCTAAGATGTT
Found at i:50915438 original size:44 final size:44
Alignment explanation
Indices: 50915390--50915478 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
50915380 TTGAAACCAA
* * *
50915390 AATAGAAGTAGTGATAATTATACATTTAAAAATATTTATAATTT
1 AATAGAAGTAGTGATAATGACACATTTAAAAATAATTATAATTT
* *
50915434 AATAGAAGTTGTGATAATGGCACATTTAAAAATAATTATAATTT
1 AATAGAAGTAGTGATAATGACACATTTAAAAATAATTATAATTT
50915478 A
1 A
50915479 TTTTACAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.38
Consensus pattern (44 bp):
AATAGAAGTAGTGATAATGACACATTTAAAAATAATTATAATTT
Found at i:50917140 original size:20 final size:19
Alignment explanation
Indices: 50917117--50917155 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
50917107 AATTACAAAA
50917117 AAAAAATCAAAATAATTTTT
1 AAAAAATCAAAAT-ATTTTT
* *
50917137 AAAAATTCTAAATATTTTT
1 AAAAAATCAAAATATTTTT
50917156 TTAAATTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAAAATCAAAATATTTTT
Found at i:50917142 original size:19 final size:19
Alignment explanation
Indices: 50917117--50917170 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
50917107 AATTACAAAA
*
50917117 AAAAAATCAAAATAATTTTT
1 AAAAATTCAAAAT-ATTTTT
*
50917137 AAAAATTCTAAATATTTTT
1 AAAAATTCAAAATATTTTT
** *
50917156 TTAAATTAAAAATAT
1 AAAAATTCAAAATAT
50917171 AAAAAATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAAATTCAAAATATTTTT
Found at i:50917337 original size:25 final size:26
Alignment explanation
Indices: 50917303--50917353 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
50917293 AATGATTCAA
50917303 ATTTATTATACTAAAATAT-TTTTTT
1 ATTTATTATACTAAAATATATTTTTT
50917328 ATTTATTATACTAAAATATATTTTTT
1 ATTTATTATACTAAAATATATTTTTT
50917354 TTACTTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (26 bp):
ATTTATTATACTAAAATATATTTTTT
Found at i:50918178 original size:31 final size:31
Alignment explanation
Indices: 50918142--50918209 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
50918132 GAAAAATAAT
* *
50918142 AATTTAACTCTT-TTTGAAAGGTTAATGGTTA
1 AATTTAAC-CTTATTTGAAAAGTTAATGGCTA
*
50918173 AATTTAACCTTATTTTAAAAGTTAATGGCTA
1 AATTTAACCTTATTTGAAAAGTTAATGGCTA
*
50918204 ATTTTA
1 AATTTA
50918210 GTTAAAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 3 0.09
31 29 0.91
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.46
Consensus pattern (31 bp):
AATTTAACCTTATTTGAAAAGTTAATGGCTA
Found at i:50918892 original size:34 final size:34
Alignment explanation
Indices: 50918849--50918925 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 34
50918839 AATACTAAAT
*
50918849 ATTAAATTAGAGTTTAAGGT-ATTAGGGTTAATTG
1 ATTAAATTAGAGATTAA-GTAATTAGGGTTAATTG
* *
50918883 ATTAAATTAGAGATTGATTAAATTAGGGTTAATTG
1 ATTAAATTAGAGATTAAGT-AATTAGGGTTAATTG
50918918 ATTAAATT
1 ATTAAATT
50918926 TAGGGTTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
33 1 0.03
34 15 0.39
35 22 0.58
ACGTcount: A:0.39, C:0.00, G:0.19, T:0.42
Consensus pattern (34 bp):
ATTAAATTAGAGATTAAGTAATTAGGGTTAATTG
Found at i:50918915 original size:35 final size:37
Alignment explanation
Indices: 50918869--50918958 Score: 121
Period size: 39 Copynumber: 2.4 Consensus size: 37
50918859 AGTTTAAGGT
50918869 ATTAGGGTTAATTGATTAAA-TTAGAG-ATTGATTAA
1 ATTAGGGTTAATTGATTAAATTTAGAGTATTGATTAA
*
50918904 ATTAGGGTTAATTGATTAAATTTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAAATTTAGAG-T-ATTGATTAA
* *
50918943 TTTAGGATTAATTGAT
1 ATTAGGGTTAATTGAT
50918959 ACATAATCGT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
35 20 0.42
36 5 0.10
39 23 0.48
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (37 bp):
ATTAGGGTTAATTGATTAAATTTAGAGTATTGATTAA
Found at i:50918919 original size:19 final size:19
Alignment explanation
Indices: 50918869--50918958 Score: 123
Period size: 19 Copynumber: 4.8 Consensus size: 19
50918859 AGTTTAAGGT
50918869 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
*
50918888 ATTAGAG---ATTGATTAA
1 ATTAGGGTTAATTGATTAA
50918904 ATTAGGGTTAATTGATTAA
1 ATTAGGGTTAATTGATTAA
50918923 ATTTAGGGTTAATTGATTAA
1 A-TTAGGGTTAATTGATTAA
* *
50918943 TTTAGGATTAATTGAT
1 ATTAGGGTTAATTGAT
50918959 ACATAATCGT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
16 15 0.24
19 30 0.48
20 18 0.29
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (19 bp):
ATTAGGGTTAATTGATTAA
Found at i:50919763 original size:125 final size:126
Alignment explanation
Indices: 50919499--50919878 Score: 532
Period size: 125 Copynumber: 3.0 Consensus size: 126
50919489 TTTCTGTAAG
* * * * *
50919499 AATAATTTTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAAAGCTTCAAGCAAGATACATTGTT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAAAGCTTCAAGCAGGATGCACTGTC
* * * * * * *
50919564 AGCAAAATTTTTGAAAAAATCTCCCAAATGGACGCTCTTTTGCTACAATAGTTCGTTGAAA
66 AGTAAAATTTCTGAAAAAAGCTCCTACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * * * *
50919625 AATAATTCTGAGTAGACATTTATGAACAAATAGTGTTGAAAACGCTTCAAGTAGGATGCACTGTC
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAAAGCTTCAAGCAGGATGCACTGTC
50919690 AGTAAAATTTCTGAAAAAA-CTCCTACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGTAAAATTTCTGAAAAAAGCTCCTACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
*
50919750 AATAATTCTGAGTAGACGTTTCTGAACAAATAGAGTCGAAAATA-CTTCAAGCAGGATGCACTGT
1 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAA-AGCTTCAAGCAGGATGCACTGT
* * *
50919814 CAGTAAAATTTCTAAAAAAAGC-CCTCACGTGGACGCTCTTTTGATACAGTAGTTCGTAGAAA
65 CAGTAAAATTTCTGAAAAAAGCTCCT-ACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
50919876 AAT
1 AAT
50919879 GAGGCTATAA
Statistics
Matches: 226, Mismatches: 25, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
125 116 0.51
126 110 0.49
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (126 bp):
AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTCGAAAAAGCTTCAAGCAGGATGCACTGTC
AGTAAAATTTCTGAAAAAAGCTCCTACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:50923393 original size:18 final size:18
Alignment explanation
Indices: 50923367--50923409 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
50923357 GATTAGGAAA
* *
50923367 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
50923385 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
50923403 AGGATAC
1 AGGATAC
50923410 GCACCTAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:50925052 original size:48 final size:46
Alignment explanation
Indices: 50924998--50925132 Score: 155
Period size: 48 Copynumber: 2.8 Consensus size: 46
50924988 ATGCAAACAT
* *
50924998 CATAAATGAAAAAAAAATCAAGCAGTATTGAAATTTTAATTATAA-TTG
1 CATAAATGAAAAAAATATCAA-TAGTATTGAAA-TTTAATTA-AATTTG
* *
50925046 CATAAATGAATAATATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAAAAAAATATC-AATAGTATTG-AAATTTAATTAAATTTG
*
50925094 CATAAATTAAAAAAATATCGAATAGTATTGAAAATTTAA
1 CATAAATGAAAAAAATATC-AATAGTATTG-AAATTTAA
50925133 AATTATCACT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
47 2 0.03
48 68 0.91
49 5 0.07
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (46 bp):
CATAAATGAAAAAAATATCAATAGTATTGAAATTTAATTAAATTTG
Found at i:50925281 original size:11 final size:11
Alignment explanation
Indices: 50925265--50925326 Score: 65
Period size: 11 Copynumber: 5.7 Consensus size: 11
50925255 ATTTAAACAA
50925265 AGAAATTTGAT
1 AGAAATTTGAT
50925276 AGAAATTTGAT
1 AGAAATTTGAT
* *
50925287 AGAAGTTTGAG
1 AGAAATTTGAT
*
50925298 A-AAATTTCA-
1 AGAAATTTGAT
50925307 ATGAAATTTGAT
1 A-GAAATTTGAT
*
50925319 AGATATTT
1 AGAAATTT
50925327 TAAGGGAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 6 0.14
11 34 0.81
12 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.37
Consensus pattern (11 bp):
AGAAATTTGAT
Found at i:50926377 original size:31 final size:31
Alignment explanation
Indices: 50926342--50926403 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
50926332 TATTAATATT
*
50926342 AATATAAAATTTAAATTTAT-TATTTTTTAAA
1 AATAT-AAATATAAATTTATATATTTTTTAAA
** *
50926373 AATATTTATATATATTTATATATTTTTTAAA
1 AATATAAATATAAATTTATATATTTTTTAAA
50926404 TTTTTTTTGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (31 bp):
AATATAAATATAAATTTATATATTTTTTAAA
Found at i:50927367 original size:15 final size:15
Alignment explanation
Indices: 50927347--50927375 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
50927337 TTTCTGAAAT
50927347 TTTTTATATTTTTTA
1 TTTTTATATTTTTTA
50927362 TTTTTATATTTTTT
1 TTTTTATATTTTTT
50927376 TAAAAAGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTATATTTTTTA
Found at i:50928126 original size:13 final size:13
Alignment explanation
Indices: 50928110--50928134 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50928100 ACACAAGCCC
50928110 AAAAATAAAAAAT
1 AAAAATAAAAAAT
50928123 AAAAATAAAAAA
1 AAAAATAAAAAA
50928135 ATGCACGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:50928859 original size:20 final size:19
Alignment explanation
Indices: 50928830--50928913 Score: 62
Period size: 20 Copynumber: 4.2 Consensus size: 19
50928820 GATATTAATG
*
50928830 AAATCATTAGAAATTTTGGT
1 AAATC-TTAGAAATATTGGT
* *
50928850 AAATCGTTAGAAATAATAGT
1 AAATC-TTAGAAATATTGGT
50928870 AAATCTTTA-AATATATTGGT
1 AAATC-TTAGAA-ATATTGGT
* * *
50928890 CAAAACTTAGAAATTTTGGA
1 -AAATCTTAGAAATATTGGT
50928910 AAAT
1 AAAT
50928914 TCTAAAAAAT
Statistics
Matches: 50, Mismatches: 11, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
19 5 0.10
20 39 0.78
21 6 0.12
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (19 bp):
AAATCTTAGAAATATTGGT
Found at i:50929115 original size:20 final size:20
Alignment explanation
Indices: 50929077--50929115 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50929067 AAATTATTGG
*
50929077 AAATAATGGTAAATCATTAC
1 AAATAATGGTAAAGCATTAC
* *
50929097 AAATATTGGTAAAGGATTA
1 AAATAATGGTAAAGCATTA
50929116 GATGTGTTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.49, C:0.05, G:0.15, T:0.31
Consensus pattern (20 bp):
AAATAATGGTAAAGCATTAC
Found at i:50929346 original size:20 final size:20
Alignment explanation
Indices: 50929323--50929366 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
50929313 AGATATTTTT
*
50929323 GTAAACCATTAGAAATAATG
1 GTAAACCATTAAAAATAATG
* * *
50929343 GTAAATCTTTAAAAATATTG
1 GTAAACCATTAAAAATAATG
50929363 GTAA
1 GTAA
50929367 CATCATAGAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.32
Consensus pattern (20 bp):
GTAAACCATTAAAAATAATG
Found at i:50930906 original size:20 final size:20
Alignment explanation
Indices: 50930877--50930917 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
50930867 AAACTTTTAT
* *
50930877 AAATATTAGTAAATCGTTAG
1 AAATAATAGTAAATCCTTAG
50930897 AAATAATAGTAAATCCTTAG
1 AAATAATAGTAAATCCTTAG
50930917 A
1 A
50930918 TTTTTTTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.32
Consensus pattern (20 bp):
AAATAATAGTAAATCCTTAG
Found at i:50931289 original size:40 final size:39
Alignment explanation
Indices: 50931230--50931323 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 39
50931220 TATTAAAGGG
* *
50931230 TTTAGAAATTTTGTGAAATCCTTAAAAATACAT-GTAAATC
1 TTTAGATATTTTG-GAAATCATTAAAAATA-ATGGTAAATC
* *
50931270 TTTAGATATTTTGGCAAATCATTAGAAATAATGGTAATTC
1 TTTAGATATTTTGG-AAATCATTAAAAATAATGGTAAATC
*
50931310 CTTAGATATTTTGG
1 TTTAGATATTTTGG
50931324 TAAAGGCTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 3 0.06
40 44 0.94
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (39 bp):
TTTAGATATTTTGGAAATCATTAAAAATAATGGTAAATC
Found at i:50931324 original size:20 final size:20
Alignment explanation
Indices: 50931263--50931327 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
50931253 AAAAATACAT
*
50931263 GTAAATCTTTAGATATTTTG
1 GTAAATCATTAGATATTTTG
* * **
50931283 GCAAATCATTAGAAATAATG
1 GTAAATCATTAGATATTTTG
* *
50931303 GTAATTCCTTAGATATTTTG
1 GTAAATCATTAGATATTTTG
50931323 GTAAA
1 GTAAA
50931328 GGCTTAGATA
Statistics
Matches: 33, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (20 bp):
GTAAATCATTAGATATTTTG
Found at i:50931551 original size:20 final size:20
Alignment explanation
Indices: 50931523--50931573 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
50931513 AGATATTTTA
* *
50931523 GTAAGGTCTTAAAATTATTG
1 GTAAAGTCTTAAAACTATTG
50931543 GTAAAGTCTTAAAACTATTG
1 GTAAAGTCTTAAAACTATTG
*
50931563 GTAAAGGCTTA
1 GTAAAGTCTTA
50931574 GATGTGTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.35
Consensus pattern (20 bp):
GTAAAGTCTTAAAACTATTG
Found at i:50936961 original size:9 final size:9
Alignment explanation
Indices: 50936947--50936977 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
50936937 TAGGCTTGGG
*
50936947 AATTGAAGA
1 AATTGAATA
50936956 AATTGAATA
1 AATTGAATA
50936965 AATTGAATA
1 AATTGAATA
50936974 AATT
1 AATT
50936978 TCATTTTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (9 bp):
AATTGAATA
Found at i:50939860 original size:49 final size:47
Alignment explanation
Indices: 50939686--50940144 Score: 693
Period size: 47 Copynumber: 9.6 Consensus size: 47
50939676 CCCTTCGGGA
* * * * * *
50939686 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50939733 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50939780 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50939827 CTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50939876 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50939925 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50939972 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
50940019 CTTATCACATATATATACACTTTCACATTCATGACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
50940068 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
50940117 CTTATCACATATATACACTTTCACATTC
1 CTTATCACATATATACACTTTCACATTC
50940145 CAATGAATAA
Statistics
Matches: 382, Mismatches: 26, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 199 0.52
49 183 0.48
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:50940024 original size:192 final size:192
Alignment explanation
Indices: 50939686--50940144 Score: 814
Period size: 192 Copynumber: 2.4 Consensus size: 192
50939676 CCCTTCGGGA
* * * * *
50939686 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
50939749 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
50939814 TCGGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
50939876 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
50939941 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
* * *
50940006 TTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATGACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
50940068 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
50940133 ACTTTCACATTC
66 ACTTTCACATTC
50940145 CAATGAATAA
Statistics
Matches: 257, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
190 10 0.04
191 1 0.00
192 246 0.96
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (192 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
Found at i:50941773 original size:13 final size:13
Alignment explanation
Indices: 50941755--50941779 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50941745 TACTAAATTT
50941755 TCATGGATTCAAA
1 TCATGGATTCAAA
50941768 TCATGGATTCAA
1 TCATGGATTCAA
50941780 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:50946409 original size:46 final size:46
Alignment explanation
Indices: 50946304--50946432 Score: 170
Period size: 46 Copynumber: 2.8 Consensus size: 46
50946294 ACCACATTAT
*
50946304 GAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATTGAGAC
* * * *
50946352 GAGTGCTAGTGTAAGACATGTCTGGGACATGCTTCAGCCTTGAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGAC
*
50946398 GTA-AGCCAGTGTAAGACATGTCTGAGACATGCATC
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGCATC
50946433 GTCTACGAGA
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
46 43 0.61
47 14 0.20
48 14 0.20
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGAGAC
Found at i:50950686 original size:21 final size:23
Alignment explanation
Indices: 50950662--50950703 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
50950652 TATATACATG
50950662 GATAGGTTTT-AATG-TAATTAT
1 GATAGGTTTTAAATGTTAATTAT
*
50950683 GATAGTTTTTAAATGTTAATT
1 GATAGGTTTTAAATGTTAATT
50950704 TAGTAATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 4 0.22
23 5 0.28
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (23 bp):
GATAGGTTTTAAATGTTAATTAT
Found at i:50953194 original size:40 final size:40
Alignment explanation
Indices: 50953135--50953222 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 40
50953125 TACTCTTTAT
* * * **
50953135 ATATTTTGGTAAATCTTTAGAGATATTGGTAAATCCTTAG
1 ATATGTTGGTAAAGCTTTAGAAATATTGGTAAAGACTTAG
* * *
50953175 ATATGTTGGTAAAGGTTTAGAAATTTTGTTAAAGACTTAG
1 ATATGTTGGTAAAGCTTTAGAAATATTGGTAAAGACTTAG
*
50953215 ATGTGTTG
1 ATATGTTG
50953223 ACCAAGTATA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.42
Consensus pattern (40 bp):
ATATGTTGGTAAAGCTTTAGAAATATTGGTAAAGACTTAG
Found at i:50953195 original size:20 final size:20
Alignment explanation
Indices: 50953128--50953187 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
50953118 TATTGGATAC
* *
50953128 TCTTTATATATTTTGGTAAA
1 TCTTTAGATATATTGGTAAA
*
50953148 TCTTTAGAGATATTGGTAAA
1 TCTTTAGATATATTGGTAAA
* *
50953168 TCCTTAGATATGTTGGTAAA
1 TCTTTAGATATATTGGTAAA
50953188 GGTTTAGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.45
Consensus pattern (20 bp):
TCTTTAGATATATTGGTAAA
Found at i:50953692 original size:20 final size:20
Alignment explanation
Indices: 50953669--50953737 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
50953659 GAAATATTGT
*
50953669 TAAATTCTTAGATAGTTTAG
1 TAAATTCTTAGATAATTTAG
* * * *
50953689 TAAATCCTTAAATATTTTGG
1 TAAATTCTTAGATAATTTAG
* *
50953709 TAATTTATTAGA-AATATTAG
1 TAAATTCTTAGATAAT-TTAG
50953729 TAAATTCTT
1 TAAATTCTT
50953738 GGAAATTTTT
Statistics
Matches: 36, Mismatches: 12, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
19 2 0.06
20 34 0.94
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.46
Consensus pattern (20 bp):
TAAATTCTTAGATAATTTAG
Found at i:50953720 original size:40 final size:40
Alignment explanation
Indices: 50953649--50953743 Score: 95
Period size: 40 Copynumber: 2.4 Consensus size: 40
50953639 AGACGCTAAT
* * *
50953649 TAAATCCTTAGAAATATTGTTAAATTCTTAGATAGT-TTAG
1 TAAATCCTTAGAAATATTGGTAAATTATTAGA-AATATTAG
* *
50953689 TAAATCCTTA-AATATTTTGGTAATTTATTAGAAATATTAG
1 TAAATCCTTAGAA-ATATTGGTAAATTATTAGAAATATTAG
* *
50953729 TAAATTCTTGGAAAT
1 TAAATCCTTAGAAAT
50953744 TTTTGGAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
39 4 0.09
40 39 0.87
41 2 0.04
ACGTcount: A:0.39, C:0.06, G:0.12, T:0.43
Consensus pattern (40 bp):
TAAATCCTTAGAAATATTGGTAAATTATTAGAAATATTAG
Found at i:50953769 original size:20 final size:21
Alignment explanation
Indices: 50953739--50953779 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
50953729 TAAATTCTTG
50953739 GAAATTTTTGGAAAAGGCTTA
1 GAAATTTTTGGAAAAGGCTTA
50953760 GAAA-TTTTGGAAAAGGCTTA
1 GAAATTTTTGGAAAAGGCTTA
50953780 AAGGTGTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (21 bp):
GAAATTTTTGGAAAAGGCTTA
Found at i:50960233 original size:23 final size:24
Alignment explanation
Indices: 50960180--50960233 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
50960170 TAAAGAAAAT
* *
50960180 TAATTTCACATTCATAAACTAGCA
1 TAATTTCACAATCATAAACTACCA
* *
50960204 TAA-TTCACAATCAT-AATTACCC
1 TAATTTCACAATCATAAACTACCA
50960226 TAATTTCA
1 TAATTTCA
50960234 TCTGTATACG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 8 0.32
23 14 0.56
24 3 0.12
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35
Consensus pattern (24 bp):
TAATTTCACAATCATAAACTACCA
Found at i:50961868 original size:18 final size:18
Alignment explanation
Indices: 50961845--50961890 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
50961835 CCAGAAATAT
50961845 GGCGTATGATGCCACATA
1 GGCGTATGATGCCACATA
* *
50961863 GGCGTATTATGCCATATA
1 GGCGTATGATGCCACATA
50961881 GGCGTATGAT
1 GGCGTATGAT
50961891 CGCACGTGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (18 bp):
GGCGTATGATGCCACATA
Found at i:50962291 original size:27 final size:27
Alignment explanation
Indices: 50962228--50962316 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
50962218 CCCCAGATTA
** * *
50962228 TAAAATTACCAAAACACCCCCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
50962255 TAAAATTACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* **
50962282 TAAAATTACTGAAATACCCTTGAAGTG
1 TAAAATTACTGAAATACCCTCGATTTG
50962309 TAAAATTA
1 TAAAATTA
50962317 TCAAAATACC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:50962323 original size:27 final size:27
Alignment explanation
Indices: 50962253--50962340 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 27
50962243 ACCCCCGATT
* **
50962253 TGTAAAATTACTGAAATACCCTCGATT
1 TGTAAAATTACTGAAATACCCTTGAAG
50962280 TGTAAAATTACTGAAATACCCTTGAAG
1 TGTAAAATTACTGAAATACCCTTGAAG
*
50962307 TGTAAAATTA-TCAAAATACCC-TGTAAG
1 TGTAAAATTACT-GAAATACCCTTG-AAG
50962334 -GTAAAAT
1 TGTAAAAT
50962341 GATTGTTTTG
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
26 10 0.18
27 45 0.82
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACTGAAATACCCTTGAAG
Found at i:50963379 original size:33 final size:33
Alignment explanation
Indices: 50963249--50963380 Score: 159
Period size: 33 Copynumber: 4.2 Consensus size: 33
50963239 ATTGCATTAC
* * *
50963249 ACTGTACTGATATTGTATAGCGCTAAGGCCCAC
1 ACTGTACTGATACTGTATAGGGCTAAGGCCCAG
50963282 ACTGT--T-ACTA-TG--TAGGGCTAAGGCCCAG
1 ACTGTACTGA-TACTGTATAGGGCTAAGGCCCAG
* *
50963310 ACTATACTCATACTGTATAGGGCTAAGGCCCAG
1 ACTGTACTGATACTGTATAGGGCTAAGGCCCAG
*
50963343 ACTGTACTGATACTGTATAGGGCTAAAGCCCAG
1 ACTGTACTGATACTGTATAGGGCTAAGGCCCAG
50963376 ACTGT
1 ACTGT
50963381 TTTGCATATT
Statistics
Matches: 86, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
28 18 0.21
30 6 0.07
31 6 0.07
33 56 0.65
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (33 bp):
ACTGTACTGATACTGTATAGGGCTAAGGCCCAG
Found at i:50965156 original size:7 final size:6
Alignment explanation
Indices: 50965136--50965165 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
50965126 CACTCAAGTA
50965136 TTCTATT TTCTTT TTCTTT TTCTTT TTCTT
1 TTCT-TT TTCTTT TTCTTT TTCTTT TTCTT
50965166 GGGACCGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (6 bp):
TTCTTT
Found at i:50966128 original size:17 final size:18
Alignment explanation
Indices: 50966096--50966129 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50966086 CGTTGGGCTA
*
50966096 AATGGGCTGTGTGGGCCC
1 AATGGGCTGCGTGGGCCC
50966114 AATGGGCT-CGTGGGCC
1 AATGGGCTGCGTGGGCC
50966130 TCACATTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.24, G:0.44, T:0.21
Consensus pattern (18 bp):
AATGGGCTGCGTGGGCCC
Found at i:50966377 original size:27 final size:26
Alignment explanation
Indices: 50966338--50966411 Score: 85
Period size: 27 Copynumber: 2.8 Consensus size: 26
50966328 GGTTGTTAAG
50966338 ACCCTAGATTGTAAAATTACCAAAAT
1 ACCCTAGATTGTAAAATTACCAAAAT
* *
50966364 ACCCTCAGTTTGTAAAATTACTAAAAT
1 ACCCT-AGATTGTAAAATTACCAAAAT
* * *
50966391 ATCCTTGAAGTGTAAAATTAC
1 ACCCTAG-ATTGTAAAATTAC
50966412 TGAATTACCC
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.15
27 34 0.85
ACGTcount: A:0.42, C:0.18, G:0.09, T:0.31
Consensus pattern (26 bp):
ACCCTAGATTGTAAAATTACCAAAAT
Found at i:50966432 original size:27 final size:27
Alignment explanation
Indices: 50966375--50966440 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
50966365 CCCTCAGTTT
* * * *
50966375 GTAAAATTACTAAAATATCCTTGAAGT
1 GTAAAATTACTGAAATACCCCTGAAGG
* *
50966402 GTAAAATTACTGAATTACCCCTGTAGG
1 GTAAAATTACTGAAATACCCCTGAAGG
*
50966429 GTAAAATGACTG
1 GTAAAATTACTG
50966441 TTTTGCCCTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (27 bp):
GTAAAATTACTGAAATACCCCTGAAGG
Found at i:50966901 original size:28 final size:27
Alignment explanation
Indices: 50966869--50966952 Score: 78
Period size: 33 Copynumber: 2.9 Consensus size: 27
50966859 AGACTATATT
*
50966869 GGGCTTAGGCCCACACTGTTACTGTATA
1 GGGCTAAGGCCCACACTG-TACTGTATA
*
50966897 GGGCTAAAGCCCAGACTGTACTGATACTGTATA
1 GGGCTAAGGCCC--AC---ACTG-TACTGTATA
*
50966930 GGGCTAAGGCCCAGACTGTACTG
1 GGGCTAAGGCCCACACTGTACTG
50966953 ATACTATATA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
27 5 0.11
28 14 0.30
30 2 0.04
31 1 0.02
33 24 0.52
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (27 bp):
GGGCTAAGGCCCACACTGTACTGTATA
Found at i:50966925 original size:33 final size:33
Alignment explanation
Indices: 50966883--50966975 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
50966873 TTAGGCCCAC
*
50966883 ACTGTTACTGTATAGGGCTAAAGCCCAGACTGT
1 ACTGATACTGTATAGGGCTAAAGCCCAGACTGT
*
50966916 ACTGATACTGTATAGGGCTAAGGCCCAGACTGT
1 ACTGATACTGTATAGGGCTAAAGCCCAGACTGT
*
50966949 ACTGATACTATATAGGGCTAAAGCCCA
1 ACTGATACTGTATAGGGCTAAAGCCCA
50966976 AACTATTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25
Consensus pattern (33 bp):
ACTGATACTGTATAGGGCTAAAGCCCAGACTGT
Found at i:50971863 original size:43 final size:41
Alignment explanation
Indices: 50971816--50971972 Score: 120
Period size: 42 Copynumber: 3.7 Consensus size: 41
50971806 AACATATACA
*
50971816 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAACATCG
1 ATGCC-ACGTCCCAGACATGGTCTTACATGTAATCAAA-ATCG
* * * * *
50971859 ATGCCACTATCCCAGACAAGGTCTTACACGAAATC-AGATACG
1 ATGCCAC-GTCCCAGACATGGTCTTACATGTAATCAAAAT-CG
* * * *
50971901 ATGCCGATGTCCCAGACATGGTCTTATATGTAAAAT-AGAATTCA
1 ATGCC-ACGTCCCAGACATGGTCTTACATGT--AATCA-AAATCG
*
50971945 ATGCCCACGTCCCAGACGTGGTCTTACA
1 ATG-CCACGTCCCAGACATGGTCTTACA
50971973 CGAAATCACA
Statistics
Matches: 88, Mismatches: 18, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
41 2 0.02
42 28 0.32
43 28 0.32
44 26 0.30
45 4 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (41 bp):
ATGCCACGTCCCAGACATGGTCTTACATGTAATCAAAATCG
Found at i:50973902 original size:23 final size:23
Alignment explanation
Indices: 50973860--50973903 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
50973850 GATGTGTAAT
*
50973860 GCTCCTTTTAATTGATAATAACA
1 GCTCCTTTTAATTGAGAATAACA
50973883 GCTCCTTTTAA-TGAAGAATAA
1 GCTCCTTTTAATTG-AGAATAA
50973904 TGTTCCCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.36
Consensus pattern (23 bp):
GCTCCTTTTAATTGAGAATAACA
Found at i:50974045 original size:23 final size:21
Alignment explanation
Indices: 50974005--50974063 Score: 70
Period size: 23 Copynumber: 2.8 Consensus size: 21
50973995 GACACTTGAA
50974005 ATTAAACACATTACAACAGACAT
1 ATTAAACACATTA-AACA-ACAT
50974028 ATTAAACACATTTAAAC-ACAT
1 ATTAAACACA-TTAAACAACAT
50974049 A--AAACACATTAAACA
1 ATTAAACACATTAAACA
50974064 CTTAACTTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
18 6 0.18
19 7 0.21
21 5 0.15
23 13 0.38
24 3 0.09
ACGTcount: A:0.56, C:0.20, G:0.02, T:0.22
Consensus pattern (21 bp):
ATTAAACACATTAAACAACAT
Found at i:50974055 original size:9 final size:9
Alignment explanation
Indices: 50974005--50974068 Score: 58
Period size: 9 Copynumber: 6.6 Consensus size: 9
50973995 GACACTTGAA
50974005 ATTAAACAC
1 ATTAAACAC
50974014 ATTACAACAGAC
1 ATTA-AAC--AC
50974026 ATATTAAACAC
1 --ATTAAACAC
50974037 ATTTAAACAC
1 A-TTAAACAC
*
50974047 ATAAAACAC
1 ATTAAACAC
50974056 ATTAAACAC
1 ATTAAACAC
50974065 -TTAA
1 ATTAA
50974069 CTTAAAATAA
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
8 4 0.09
9 20 0.43
10 12 0.26
11 2 0.04
12 2 0.04
13 3 0.06
14 4 0.09
ACGTcount: A:0.55, C:0.20, G:0.02, T:0.23
Consensus pattern (9 bp):
ATTAAACAC
Found at i:50974153 original size:19 final size:19
Alignment explanation
Indices: 50974126--50974218 Score: 77
Period size: 19 Copynumber: 5.1 Consensus size: 19
50974116 TTATTCCAAC
* *
50974126 AACTAAATTAACTATGATG
1 AACTTAATTAACTAAGATG
*
50974145 AACTTAATTAACTAACATG
1 AACTTAATTAACTAAGATG
* * * *
50974164 AA--TAATTTATTCCAG--C
1 AACTTAATTAACT-AAGATG
50974180 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
*
50974199 AACTCAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
50974218 A
1 A
50974219 GTAATTTATT
Statistics
Matches: 56, Mismatches: 13, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
16 2 0.04
17 9 0.16
18 8 0.14
19 37 0.66
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:50974176 original size:54 final size:54
Alignment explanation
Indices: 50974116--50974244 Score: 204
Period size: 54 Copynumber: 2.4 Consensus size: 54
50974106 CATCATTAAA
* * * *
50974116 TTATTCCAACAACTAAATTAACTATGATGAACTTAATTAACTAACATGAATAAT
1 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
* *
50974170 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
50974224 TTATTCCAGCAACTTAATTAA
1 TTATTCCAGCAACTTAATTAA
50974245 TTGAACTAAG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (54 bp):
TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAACATGAATAAT
Found at i:50979511 original size:20 final size:22
Alignment explanation
Indices: 50979483--50979529 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
50979473 CAAGCTACCA
*
50979483 AAAACAATAAAGAA-TGA-AAG
1 AAAATAATAAAGAATTGAGAAG
50979503 AAAATAATAAAGAATTGAGAAG
1 AAAATAATAAAGAATTGAGAAG
50979525 AAAAT
1 AAAAT
50979530 CATCCCTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 13 0.54
21 3 0.12
22 8 0.33
ACGTcount: A:0.68, C:0.02, G:0.15, T:0.15
Consensus pattern (22 bp):
AAAATAATAAAGAATTGAGAAG
Found at i:50980459 original size:51 final size:51
Alignment explanation
Indices: 50980365--50980474 Score: 143
Period size: 51 Copynumber: 2.1 Consensus size: 51
50980355 CTAAAATGGT
*
50980365 GAAAATGGAGAAATGAGAAACATTTGGAAATGATAATTTTTTTCTCAAAAAA
1 GAAAATGGAGAAATGAGAAACATTTGGAAATGA-AATTATTTTCTCAAAAAA
* * *
50980417 GAAAATGGAGAAATG-GAATCATTTGGAAATG-AATGTGATTTTCTCCAAAAT
1 GAAAATGGAGAAATGAGAAACATTTGGAAATGAAAT-T-ATTTTCTCAAAAAA
50980468 GAAAATG
1 GAAAATG
50980475 ACTTGAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
49 3 0.06
50 1 0.02
51 33 0.63
52 15 0.29
ACGTcount: A:0.45, C:0.06, G:0.20, T:0.28
Consensus pattern (51 bp):
GAAAATGGAGAAATGAGAAACATTTGGAAATGAAATTATTTTCTCAAAAAA
Found at i:50988610 original size:93 final size:93
Alignment explanation
Indices: 50988498--50988669 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
50988488 CGCCCATAAG
* *
50988498 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50988563 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
50988591 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
50988656 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
50988670 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:50988666 original size:46 final size:46
Alignment explanation
Indices: 50988491--50988666 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
50988481 TGTAACCCGC
* * *
50988491 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
50988537 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
50988587 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
50988630 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
50988667 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:50994634 original size:40 final size:40
Alignment explanation
Indices: 50994579--50995054 Score: 731
Period size: 40 Copynumber: 11.9 Consensus size: 40
50994569 ATTGAGAGTT
*
50994579 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
50994619 ATATATCTGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
50994659 ATTTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
50994699 ATATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
50994739 TTATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
50994779 TTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
50994819 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* ** *
50994859 TTATATCCGGGCTAAGTCCTAAAGAGCATTCGTGTTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
*
50994899 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGG-G
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GGTG
50994939 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* * *
50994979 TTATATCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* **
50995019 ATATATCCGGGCTAAATCTTGAAG-GCATTCGTGCTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTG
50995055 AAATTATAAG
Statistics
Matches: 400, Mismatches: 34, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
39 13 0.03
40 385 0.96
41 2 0.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
Found at i:50995128 original size:29 final size:28
Alignment explanation
Indices: 50995093--50995221 Score: 118
Period size: 29 Copynumber: 4.5 Consensus size: 28
50995083 CTTCAACCGA
* *
50995093 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
50995122 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
* *
50995150 GCACTATGTGTGTGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
50995179 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
50995207 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
50995222 AATCATGTAT
Statistics
Matches: 81, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
28 38 0.47
29 43 0.53
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:50995151 original size:57 final size:57
Alignment explanation
Indices: 50995063--50995219 Score: 233
Period size: 57 Copynumber: 2.8 Consensus size: 57
50995053 TGAAATTATA
* * * * *
50995063 AGGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAATTG
** **
50995120 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAATTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAATTG
50995177 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGC
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGC
50995220 GAAATCATGT
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 90 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (57 bp):
AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAATTG
Found at i:50995212 original size:28 final size:28
Alignment explanation
Indices: 50995065--50995221 Score: 147
Period size: 28 Copynumber: 5.5 Consensus size: 28
50995055 AAATTATAAG
* * * *
50995065 GCACTGTGTGTGCAAGCTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTTCAATCGA
* * * * *
50995093 GCACTATGTGTGCCAGATCAGT-AGTTGA
1 GCACTATGTGTGCGAGTTC-TTCAATCGA
50995121 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTCAATCGA
* ** *
50995150 GCACTATGTGTGTGAGATTGGT-AATTGA
1 GCACTATGTGTGCGAG-TTCTTCAATCGA
50995178 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTCAATCGA
50995207 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
50995222 AATCATGTAT
Statistics
Matches: 103, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
28 58 0.56
29 45 0.44
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTCAATCGA
Found at i:51009402 original size:25 final size:25
Alignment explanation
Indices: 51009341--51009404 Score: 101
Period size: 25 Copynumber: 2.6 Consensus size: 25
51009331 TCTTTTATAA
* *
51009341 ACTTTAAATTAAGAATTCTATTAGG
1 ACTTTAAATTAGGAATTCTACTAGG
51009366 ACTTTAAATTAGGAATTCTACTAGG
1 ACTTTAAATTAGGAATTCTACTAGG
*
51009391 TCTTTAAATTAGGA
1 ACTTTAAATTAGGA
51009405 CTTTCCCTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTCTACTAGG
Found at i:51013981 original size:25 final size:25
Alignment explanation
Indices: 51013890--51013969 Score: 142
Period size: 25 Copynumber: 3.2 Consensus size: 25
51013880 TTTTTTATAA
* *
51013890 ACTTTAAATTAAGAATTCTATTAGG
1 ACTTTAAATTAGGAATTCTACTAGG
51013915 ACTTTAAATTAGGAATTCTACTAGG
1 ACTTTAAATTAGGAATTCTACTAGG
51013940 ACTTTAAATTAGGAATTCTACTAGG
1 ACTTTAAATTAGGAATTCTACTAGG
51013965 ACTTT
1 ACTTT
51013970 CCTTTTGTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (25 bp):
ACTTTAAATTAGGAATTCTACTAGG
Found at i:51018161 original size:26 final size:26
Alignment explanation
Indices: 51018132--51018199 Score: 95
Period size: 25 Copynumber: 2.7 Consensus size: 26
51018122 AATATTGAAC
51018132 ATGTAAATCTCAAATAACTTTATAAA
1 ATGTAAATCTCAAATAACTTTATAAA
*
51018158 ATGTTAA-CTCAAATAACTTTATAAA
1 ATGTAAATCTCAAATAACTTTATAAA
*
51018183 ATGTTAAAT-TAAAATAA
1 ATG-TAAATCTCAAATAA
51018200 TAGGATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 21 0.57
26 16 0.43
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.35
Consensus pattern (26 bp):
ATGTAAATCTCAAATAACTTTATAAA
Found at i:51018174 original size:25 final size:25
Alignment explanation
Indices: 51018140--51018189 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
51018130 ACATGTAAAT
51018140 CTCAAATAACTTTATAAAATGTTAA
1 CTCAAATAACTTTATAAAATGTTAA
51018165 CTCAAATAACTTTATAAAATGTTAA
1 CTCAAATAACTTTATAAAATGTTAA
51018190 ATTAAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.48, C:0.12, G:0.04, T:0.36
Consensus pattern (25 bp):
CTCAAATAACTTTATAAAATGTTAA
Found at i:51019357 original size:32 final size:31
Alignment explanation
Indices: 51019320--51019379 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
51019310 ATTATTATTT
51019320 AATATTAATATAATTTTT-TTATATTTTTTGAA
1 AATATTAATAT-ATTTTTATT-TATTTTTTGAA
* *
51019352 AATATTTATGTATTTTTATTTATTTTTT
1 AATATTAATATATTTTTATTTATTTTTT
51019380 AGAATTAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 14 0.56
32 11 0.44
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (31 bp):
AATATTAATATATTTTTATTTATTTTTTGAA
Found at i:51019947 original size:21 final size:21
Alignment explanation
Indices: 51019922--51019963 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
51019912 GCAATACTAA
*
51019922 AATTTCTAATGGGATATTAAT
1 AATTTCTAATGGGAAATTAAT
*
51019943 AATTTCTAATGTGAAATTAAT
1 AATTTCTAATGGGAAATTAAT
51019964 TTTTTTACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (21 bp):
AATTTCTAATGGGAAATTAAT
Found at i:51020211 original size:18 final size:18
Alignment explanation
Indices: 51020170--51020213 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
51020160 TACGAGTTAA
51020170 AAAATTTAATATCTATTT
1 AAAATTTAATATCTATTT
*
51020188 AGAAATTTCAATCTCT-TTT
1 A-AAATTT-AATATCTATTT
51020207 AAAATTT
1 AAAATTT
51020214 TGGTATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.30
19 10 0.43
20 6 0.26
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (18 bp):
AAAATTTAATATCTATTT
Found at i:51020357 original size:19 final size:20
Alignment explanation
Indices: 51020330--51020370 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
51020320 AAAATAAGTT
* *
51020330 ATATTTAAT-TGATATTGAA
1 ATATATAATGTGATATTAAA
51020349 ATATATAATGTGATATTAAA
1 ATATATAATGTGATATTAAA
51020369 AT
1 AT
51020371 TTATTTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (20 bp):
ATATATAATGTGATATTAAA
Found at i:51026520 original size:20 final size:20
Alignment explanation
Indices: 51026495--51026533 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
51026485 TCTTTATATA
51026495 TTTTTCATAATTTTTTTAAG
1 TTTTTCATAATTTTTTTAAG
51026515 TTTTTCATAATTTTTTTAA
1 TTTTTCATAATTTTTTTAA
51026534 AAATATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (20 bp):
TTTTTCATAATTTTTTTAAG
Found at i:51026579 original size:18 final size:20
Alignment explanation
Indices: 51026552--51026593 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
51026542 ATCTTAAAAA
* *
51026552 TTTTATAAA-TATTTTGAAT
1 TTTTATAAATTACTTTAAAT
51026571 TTTTA-AAATTACTTTAAAT
1 TTTTATAAATTACTTTAAAT
51026590 TTTT
1 TTTT
51026594 CTTTTTCTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTTATAAATTACTTTAAAT
Found at i:51026972 original size:4 final size:4
Alignment explanation
Indices: 51026963--51026993 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
51026953 TGCCTCTGTT
51026963 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
51026994 TTCTCTTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:51032703 original size:27 final size:27
Alignment explanation
Indices: 51032673--51032730 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 27
51032663 ATTAATATAA
51032673 TTTTATAAAATAAGAAAAAAATTCATT
1 TTTTATAAAATAAGAAAAAAATTCATT
* * ***
51032700 TTTT-TAGAATTATTTAAAAATTCATT
1 TTTTATAAAATAAGAAAAAAATTCATT
51032726 TTTTA
1 TTTTA
51032731 GAATTATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (27 bp):
TTTTATAAAATAAGAAAAAAATTCATT
Found at i:51032718 original size:26 final size:25
Alignment explanation
Indices: 51032689--51032739 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
51032679 AAAATAAGAA
51032689 AAAAATTCATTTTTTTAGAATTATTT
1 AAAAATTCA-TTTTTTAGAATTATTT
51032715 AAAAATTCATTTTTTAGAATTATTT
1 AAAAATTCATTTTTTAGAATTATTT
51032740 TGTACAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (25 bp):
AAAAATTCATTTTTTAGAATTATTT
Found at i:51034549 original size:16 final size:17
Alignment explanation
Indices: 51034530--51034570 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
51034520 AGGAGATATC
51034530 AATTTAATTTAAAT-CA
1 AATTTAATTTAAATACA
*
51034546 AATTTTA-TTAAATACA
1 AATTTAATTTAAATACA
51034562 ATATTTAAT
1 A-ATTTAAT
51034571 AAATTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
15 6 0.30
16 9 0.45
17 5 0.25
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTAATTTAAATACA
Found at i:51035042 original size:17 final size:18
Alignment explanation
Indices: 51035020--51035053 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51035010 AATGTCAAGA
*
51035020 TTACTAAGAAT-ATGCCC
1 TTACTAACAATAATGCCC
51035037 TTACTAACAATAATGCC
1 TTACTAACAATAATGCC
51035054 TTGACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (18 bp):
TTACTAACAATAATGCCC
Found at i:51050164 original size:48 final size:48
Alignment explanation
Indices: 51050108--51050230 Score: 192
Period size: 48 Copynumber: 2.6 Consensus size: 48
51050098 GTCAGTGCTA
51050108 ATGCCATGTCCCGGACATGGTCTTACACTAGCACACATATCAACGCCG
1 ATGCCATGTCCCGGACATGGTCTTACACTAGCACACATATCAACGCCG
* * * * *
51050156 ATGTCATGTCCCAGACATGGTCTTACACTGGCTCACATATCAACGTCG
1 ATGCCATGTCCCGGACATGGTCTTACACTAGCACACATATCAACGCCG
*
51050204 ATGCCATGTCCTGGACATGGTCTTACA
1 ATGCCATGTCCCGGACATGGTCTTACA
51050231 TTGAATCTCG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCGGACATGGTCTTACACTAGCACACATATCAACGCCG
Found at i:51056526 original size:27 final size:27
Alignment explanation
Indices: 51056506--51056566 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 27
51056496 ATTTTTTGAA
51056506 TTTTTAGAAATTTTAATATTTTTAAAAT
1 TTTTTA-AAATTTTAATATTTTTAAAAT
* *
51056534 TTTTTAAAATTTTAACAATTTATTAATAT
1 TTTTTAAAATTTTAA-TATTT-TTAAAAT
51056563 TTTT
1 TTTT
51056567 ATTGAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 9 0.31
28 10 0.34
29 10 0.34
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (27 bp):
TTTTTAAAATTTTAATATTTTTAAAAT
Found at i:51056528 original size:9 final size:9
Alignment explanation
Indices: 51056504--51056567 Score: 60
Period size: 9 Copynumber: 6.9 Consensus size: 9
51056494 ACATTTTTTG
51056504 AATTTTTAGA
1 AATTTTTA-A
51056514 AA-TTTTAA
1 AATTTTTAA
*
51056522 TATTTTTAA
1 AATTTTTAA
51056531 AATTTTTTAA
1 AA-TTTTTAA
51056541 AA-TTTTAA
1 AATTTTTAA
51056549 CAATTTATTAA
1 -AATTT-TTAA
*
51056560 TATTTTTA
1 AATTTTTA
51056568 TTGAAAATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
8 8 0.17
9 17 0.37
10 17 0.37
11 4 0.09
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (9 bp):
AATTTTTAA
Found at i:51056538 original size:19 final size:18
Alignment explanation
Indices: 51056496--51056567 Score: 67
Period size: 19 Copynumber: 3.9 Consensus size: 18
51056486 TAAATAACAC
*
51056496 ATTTTTTGAATTTTTAGAA
1 ATTTTTTAAATTTTTA-AA
51056515 A--TTTTAATATTTTTAAA
1 ATTTTTTAA-ATTTTTAAA
*
51056532 ATTTTTTAAAATTTTAACA
1 ATTTTTTAAATTTTTAA-A
*
51056551 ATTTATTAATATTTTTA
1 ATTTTTTAA-ATTTTTA
51056568 TTGAAAATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
17 8 0.18
18 14 0.32
19 16 0.36
20 6 0.14
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (18 bp):
ATTTTTTAAATTTTTAAA
Found at i:51058654 original size:65 final size:65
Alignment explanation
Indices: 51058546--51058758 Score: 275
Period size: 65 Copynumber: 3.3 Consensus size: 65
51058536 GTTACGACTA
* * * *
51058546 CTCTTTGTGAGCATCCTATTTAT-TGATCGGTTGTGATCCTGCATATGTTGCGGATACAAACGCA
1 CTCTTTGTGAGCGTCCT-GTTATGCGATCGGTTGTGATCCTGCATATGTTGCGGACACAAACGCA
51058610 G
65 G
* * * *
51058611 CTCTTTGTGAGCGTCCTGTTATGCGATTGGTTGTGATCTTGCATATATTACGGACACAAACGCAG
1 CTCTTTGTGAGCGTCCTGTTATGCGATCGGTTGTGATCCTGCATATGTTGCGGACACAAACGCAG
* * * * * *
51058676 CTCTTTGTGAGTGTCCTGTTATGCGAACGGTTGTGATCGTGTATATGTTGTGGACACAAATGCAG
1 CTCTTTGTGAGCGTCCTGTTATGCGATCGGTTGTGATCCTGCATATGTTGCGGACACAAACGCAG
*
51058741 CTCTTTATGAGCGTCCTG
1 CTCTTTGTGAGCGTCCTG
51058759 ATATACGGCT
Statistics
Matches: 128, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
64 4 0.03
65 124 0.97
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.35
Consensus pattern (65 bp):
CTCTTTGTGAGCGTCCTGTTATGCGATCGGTTGTGATCCTGCATATGTTGCGGACACAAACGCAG
Found at i:51060991 original size:19 final size:17
Alignment explanation
Indices: 51060952--51060988 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
51060942 TGATAAATGT
51060952 TATGTTATACGTGTGAA
1 TATGTTATACGTGTGAA
*
51060969 TATGTTATACGTGTGTA
1 TATGTTATACGTGTGAA
51060986 TAT
1 TAT
51060989 ATGAAAGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (17 bp):
TATGTTATACGTGTGAA
Found at i:51065827 original size:65 final size:65
Alignment explanation
Indices: 51065746--51065887 Score: 182
Period size: 65 Copynumber: 2.2 Consensus size: 65
51065736 AATATCGTAG
* * *
51065746 CTCTTCGTGAGCATCCTGTTTAT-TGATC-GATTGTGATCCTGCATATGTTTTAG-ACACAAACA
1 CTCTTTGTGAGCATCCTG-TTATGCGATCAG-TTGTGATCCTGCATATG-TTGAGAACACAAACA
51065808 CAA
63 CAA
* *
51065811 CTCTTTGTGAGCATCCTGTTATGCGATCAGTTGTGATCCTGCATATGTTGCGAACACAAACACAG
1 CTCTTTGTGAGCATCCTGTTATGCGATCAGTTGTGATCCTGCATATGTTGAGAACACAAACACAA
*
51065876 CTCTTTATGAGC
1 CTCTTTGTGAGC
51065888 GTCTTGATAT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
64 7 0.10
65 60 0.88
66 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (65 bp):
CTCTTTGTGAGCATCCTGTTATGCGATCAGTTGTGATCCTGCATATGTTGAGAACACAAACACAA
Found at i:51065988 original size:23 final size:24
Alignment explanation
Indices: 51065943--51065988 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
51065933 CCCGTTACAT
*
51065943 GGCTCTTTGTGAGCATTCCTGATA
1 GGCTCTTCGTGAGCATTCCTGATA
51065967 GGCTCTTCGTGAGC-TTCCTGAT
1 GGCTCTTCGTGAGCATTCCTGAT
51065989 TAAATGTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.13, C:0.24, G:0.26, T:0.37
Consensus pattern (24 bp):
GGCTCTTCGTGAGCATTCCTGATA
Found at i:51071780 original size:33 final size:29
Alignment explanation
Indices: 51071714--51071772 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
51071704 AAATATTAGG
51071714 GAAGACCTGTTTCATTATTTATTTTCTTT
1 GAAGACCTGTTTCATTATTTATTTTCTTT
*
51071743 GAAGACCTGTTTCATTATTTATTTGCTTT
1 GAAGACCTGTTTCATTATTTATTTTCTTT
51071772 G
1 G
51071773 CTTGAAGATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.20, C:0.14, G:0.14, T:0.53
Consensus pattern (29 bp):
GAAGACCTGTTTCATTATTTATTTTCTTT
Done.