Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 151 of 345
Found at i:51076844 original size:22 final size:22
Alignment explanation
Indices: 51076816--51076857 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
51076806 TTCGCTGCCT
51076816 CTAATACT-AGCATTCTTTGTCC
1 CTAATACTGA-CATTCTTTGTCC
51076838 CTAATACTGACATTCTTTGT
1 CTAATACTGACATTCTTTGT
51076858 GAATTCCAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.43
Consensus pattern (22 bp):
CTAATACTGACATTCTTTGTCC
Found at i:51089945 original size:19 final size:19
Alignment explanation
Indices: 51089921--51089964 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
51089911 TCATAAGTAC
51089921 ATGTTAGAGTGAGAATTTG
1 ATGTTAGAGTGAGAATTTG
* *
51089940 ATGTTATAGTGAGAATTTT
1 ATGTTAGAGTGAGAATTTG
51089959 ATGTTA
1 ATGTTA
51089965 CCATGTAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.43
Consensus pattern (19 bp):
ATGTTAGAGTGAGAATTTG
Found at i:51095577 original size:44 final size:44
Alignment explanation
Indices: 51095511--51095598 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
51095501 GCAGTAGTTT
51095511 AGTCATAACTTTGCCATGGCATTATTATGATATGAAAACATTCC
1 AGTCATAACTTTGCCATGGCATTATTATGATATGAAAACATTCC
* * *
51095555 AGTCATAACTTTTCCATTGCATTATTATGATATGAAAATATTCC
1 AGTCATAACTTTGCCATGGCATTATTATGATATGAAAACATTCC
51095599 TTGAGTAATT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (44 bp):
AGTCATAACTTTGCCATGGCATTATTATGATATGAAAACATTCC
Found at i:51097578 original size:312 final size:311
Alignment explanation
Indices: 51097014--51097639 Score: 1119
Period size: 312 Copynumber: 2.0 Consensus size: 311
51097004 GTGAGTGATA
51097014 TTAAGGGCAATTTGATAAATTGGCCTAATTATGTGTTAAATTAAAGGTTTAATTGGTGTTATTAA
1 TTAAGGGCAATTTGATAAATTGGCCTAATTATGTGTTAAATTAAAGGTTTAATTGGTGTTATTAA
*
51097079 TGACTTATTGCATATTGAATGGTTGGATTTGAAAAAATAGGTTTTATTTTATAAAAGAGCAAAAT
66 TGACTTATTGCATATTGAATGGCTGGATTTGAAAAAATAGGTTTTATTTTATAAAAGAGCAAAAT
* * * *
51097144 AGCAATTGGTTTGGTAAGTTGTGTATTATGCTTTTAGTATGATTAAGTTGTATGAAATAAATTGA
131 AGAAATTGGTTTAGTAAGTTGTGTATTATGCTTTTAGCATGATTAAATTGTATGAAATAAATTGA
*
51097209 TATTTGGAGCATGAATTGTTGATTTATTGAACATTTGATAAAATGTGTTCTAATTGGTATATGAA
196 TATTTGGAGCATGAATTGCTGATTTATTGAACATTTGATAAAATGTGTTCTAATTGGTATATGAA
*
51097274 TATTGGTAAAATGATATTTGTTATGCTTAATTTTATTGATGTTAAAATTGC
261 TATTGGGAAAATGATATTTGTTATGCTTAATTTTATTGATGTTAAAATTGC
* *
51097325 TTAAGGGCAATTTGGTAAATTGGCCTGATTATGTGTTAAATTAAAGGTTTAATTGGTGTTATTAA
1 TTAAGGGCAATTTGATAAATTGGCCTAATTATGTGTTAAATTAAAGGTTTAATTGGTGTTATTAA
* *
51097390 TGAGTTAATTGCATATTGAATGGCTGGATTTGCAAAAATAGGTTTTATTTTATAAAAGAGCAAAA
66 TGACTT-ATTGCATATTGAATGGCTGGATTTGAAAAAATAGGTTTTATTTTATAAAAGAGCAAAA
51097455 TAGAAATTGGTTTAGTAAGTTGTGTATTATGCTTTTAGCATGATTAAATTGTAT-AGAATAAATT
130 TAGAAATTGGTTTAGTAAGTTGTGTATTATGCTTTTAGCATGATTAAATTGTATGA-AATAAATT
51097519 GATATTTGGAGCATGAATTGCTGATTTATTGAACATTTGATAAAATGTGTTCTAATTGGTATATG
194 GATATTTGGAGCATGAATTGCTGATTTATTGAACATTTGATAAAATGTGTTCTAATTGGTATATG
*
51097584 AATATTGGGAAAATGATATTTGTTATGCTTAATTTTGTTGATGTTAAAATTGC
259 AATATTGGGAAAATGATATTTGTTATGCTTAATTTTATTGATGTTAAAATTGC
51097637 TTA
1 TTA
51097640 GCAACATGCT
Statistics
Matches: 301, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
311 69 0.23
312 232 0.77
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.42
Consensus pattern (311 bp):
TTAAGGGCAATTTGATAAATTGGCCTAATTATGTGTTAAATTAAAGGTTTAATTGGTGTTATTAA
TGACTTATTGCATATTGAATGGCTGGATTTGAAAAAATAGGTTTTATTTTATAAAAGAGCAAAAT
AGAAATTGGTTTAGTAAGTTGTGTATTATGCTTTTAGCATGATTAAATTGTATGAAATAAATTGA
TATTTGGAGCATGAATTGCTGATTTATTGAACATTTGATAAAATGTGTTCTAATTGGTATATGAA
TATTGGGAAAATGATATTTGTTATGCTTAATTTTATTGATGTTAAAATTGC
Found at i:51098867 original size:19 final size:20
Alignment explanation
Indices: 51098829--51098867 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
51098819 TAGTGGTTTG
**
51098829 CACACGGACGTGTGTCTTTT
1 CACACGGACGTGTGGATTTT
51098849 CACACGG-CGTGTGGATTTT
1 CACACGGACGTGTGGATTTT
51098868 TAGGGGTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.33
Consensus pattern (20 bp):
CACACGGACGTGTGGATTTT
Found at i:51105379 original size:47 final size:47
Alignment explanation
Indices: 51105320--51105861 Score: 778
Period size: 47 Copynumber: 11.4 Consensus size: 47
51105310 CAGCCAAGAG
51105320 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
51105367 AGTGTATGTATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
51105414 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
51105463 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
51105514 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
51105561 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
51105608 AGTGTATATGTGTGATAAGGCCTAATAGCCGAGGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
51105655 AGTGTATATATGTAATAAGGCCTAATGGCCGATGCGATGAATGTGGA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
51105702 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
51105749 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
51105796 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
51105843 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
51105862 TCCCGAAAGG
Statistics
Matches: 454, Mismatches: 35, Indels: 12
0.91 0.07 0.02
Matches are distributed among these distances:
47 368 0.81
49 41 0.09
51 41 0.09
53 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:51106036 original size:37 final size:37
Alignment explanation
Indices: 51105980--51106058 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
51105970 CCGAGCTCTA
* * *
51105980 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
51106017 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
51106054 AAGAC
1 AAGAC
51106059 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:51113535 original size:42 final size:43
Alignment explanation
Indices: 51113478--51113581 Score: 140
Period size: 44 Copynumber: 2.4 Consensus size: 43
51113468 CTATTATCCT
* *
51113478 AGACAGGGTCTTACACGAAATCA-AA-TACGATGTCAAGGTCCC
1 AGACATGGTCTTACACGAAATCATAAGT-CGATGCCAAGGTCCC
*
51113520 AGACATGGTCTTACACGTAAATCATAAGTCGATGCCAATGTCCC
1 AGACATGGTCTTACACG-AAATCATAAGTCGATGCCAAGGTCCC
*
51113564 AAACATGGTCTTACACGA
1 AGACATGGTCTTACACGA
51113582 TAACACATAT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
42 16 0.29
43 7 0.13
44 31 0.56
45 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (43 bp):
AGACATGGTCTTACACGAAATCATAAGTCGATGCCAAGGTCCC
Found at i:51125594 original size:20 final size:20
Alignment explanation
Indices: 51125564--51125616 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
51125554 AATTTTCCAG
*
51125564 TACATTTTTTCATAAAATTT
1 TACAATTTTTCATAAAATTT
* **
51125584 TAGAATTTTTCACCAAATTT
1 TACAATTTTTCATAAAATTT
*
51125604 TACAAATTTTCAT
1 TACAATTTTTCAT
51125617 TTTAGTCCCT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TACAATTTTTCATAAAATTT
Found at i:51135471 original size:57 final size:58
Alignment explanation
Indices: 51135382--51135518 Score: 145
Period size: 57 Copynumber: 2.4 Consensus size: 58
51135372 AAGCCACATA
** * * * *
51135382 GATTACCAGTCCAAACTAAATCCTTTATATAACGTGTGCTC-AGAGG-AGCTCGATTAG
1 GATTACCAGTCCAGGCTAAATCCCTAATATAACGTATGCTCGAGAGGTA-CTAGATTAG
* * *
51135439 GATTACCAGTCCAGGCTAAA-CCCTAATCATAACGTATGCTCGAGAGGTATTATATTGG
1 GATTACCAGTCCAGGCTAAATCCCTAAT-ATAACGTATGCTCGAGAGGTACTAGATTAG
*
51135497 GATTACCCGTCCAGGCTAAATC
1 GATTACCAGTCCAGGCTAAATC
51135519 TTTCTATAAC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
56 5 0.08
57 30 0.45
58 29 0.44
59 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (58 bp):
GATTACCAGTCCAGGCTAAATCCCTAATATAACGTATGCTCGAGAGGTACTAGATTAG
Found at i:51138956 original size:43 final size:41
Alignment explanation
Indices: 51138908--51139028 Score: 131
Period size: 43 Copynumber: 2.9 Consensus size: 41
51138898 TGTAATTACA
51138908 TGTAAGACCATGTTCGGGACATTGGCATTGTATTATGA-TTATG
1 TGTAAGACCATGTT-GGGACATTGGCATTGTA-TATGAGTT-TG
* * *
51138951 TGTAAGACCATGCTTAGTATATTGGCATCAT-TATATGAGTTTG
1 TGTAAGACCATG-TTGGGACATTGGCAT--TGTATATGAGTTTG
51138994 TGTAAGACCATGTTTGGGACATTGGCATTG-ATATG
1 TGTAAGACCATG-TTGGGACATTGGCATTGTATATG
51139029 TGATAACATG
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
41 6 0.09
43 53 0.80
44 6 0.09
45 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.25, T:0.37
Consensus pattern (41 bp):
TGTAAGACCATGTTGGGACATTGGCATTGTATATGAGTTTG
Found at i:51139041 original size:43 final size:42
Alignment explanation
Indices: 51138904--51139065 Score: 114
Period size: 43 Copynumber: 3.8 Consensus size: 42
51138894 GAGATGTAAT
*
51138904 TACATGTAAGACCATGTTCGGGACATTGGCATTG-TATTATGA
1 TACATGTAAGACCATGTTTGGGACATTGGCATTGATA-TATGA
** * * * * *
51138946 TTATGTGTAAGACCATGCTTAGTATATTGGCA-TCATTATATGA
1 -TACATGTAAGACCATGTTTGGGACATTGGCATTGA-TATATGA
*** *
51138989 GTTTGTGTAAGACCATGTTTGGGACATTGGCATTGATATGTGA
1 -TACATGTAAGACCATGTTTGGGACATTGGCATTGATATATGA
* * * *
51139032 TAACATGTAAGTCCATATCTGGGATA-TGGCATTG
1 T-ACATGTAAGACCATGTTTGGGACATTGGCATTG
51139066 TACAAGCTAT
Statistics
Matches: 92, Mismatches: 23, Indels: 9
0.74 0.19 0.07
Matches are distributed among these distances:
42 10 0.11
43 78 0.85
44 4 0.04
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (42 bp):
TACATGTAAGACCATGTTTGGGACATTGGCATTGATATATGA
Found at i:51148412 original size:40 final size:40
Alignment explanation
Indices: 51148357--51148457 Score: 166
Period size: 40 Copynumber: 2.5 Consensus size: 40
51148347 TATGTGCATA
* *
51148357 GCATTCGTTCGGGTTATTATAACCGGGTTAAGTCCTGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
51148397 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
51148437 GCATTCGTGCTGGTTGTTATA
1 GCATTCGTGCGGGTTATTATA
51148458 TCCGAGCCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.33
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:51148475 original size:40 final size:40
Alignment explanation
Indices: 51148357--51148475 Score: 112
Period size: 40 Copynumber: 3.0 Consensus size: 40
51148347 TATGTGCATA
* * ** * *
51148357 GCATTCGTTCGGGTTATTATAACCGGGTTAAGTCCTGAAG
1 GCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCGAAG
* ** *
51148397 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCGAAG
* * * *
51148437 GCATTCGTGCTGGTTGTTATATCCGAGCCAAATTCCGAA
1 GCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCGAA
51148476 AGTATTTATG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGAGCCAAATCCCGAAG
Found at i:51159784 original size:40 final size:40
Alignment explanation
Indices: 51159684--51159784 Score: 166
Period size: 40 Copynumber: 2.5 Consensus size: 40
51159674 TATGTGCATA
51159684 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
51159724 GCATTCGTACGGGTTCTTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
51159764 GCATTCGTGCTGGTTGTTATA
1 GCATTCGTGCGGGTTATTATA
51159785 TCCGAGCCAA
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.31
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:51176983 original size:40 final size:40
Alignment explanation
Indices: 51176887--51177067 Score: 242
Period size: 40 Copynumber: 4.5 Consensus size: 40
51176877 TGGATGAAAA
* * *
51176887 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
* *
51176926 CTGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
51176966 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
* *
51177006 CTGGGCTAAGTCCCGAAGGCAAT-TGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGC-ATCTGTGCGAGTTACT-AAAT
*
51177046 CCGGGCTATGTCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCAT
51177068 TTGAGTGAGT
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 34 0.27
40 89 0.70
41 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
Found at i:51177033 original size:80 final size:79
Alignment explanation
Indices: 51176884--51177070 Score: 279
Period size: 80 Copynumber: 2.4 Consensus size: 79
51176874 ATTTGGATGA
* *
51176884 AAACCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAATCTGGGCTAAGTCCCGAAGGCATC
1 AAACCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAATCTGGGCTAAGTCCCGAAGGCATC
51176949 TGTGCGAGTTACT-
66 TGTGCGAGTTACTC
* *
51176962 AAACCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCTGGGCTAAGTCCCGAAGGCA
1 AAA-CCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACT-AATCTGGGCTAAGTCCCGAAGGC-
51177027 AT-TGTGCGAGTTACTC
63 ATCTGTGCGAGTTACTC
* *
51177043 TAACCGGGCTATGTCCCGAAGGCATTTG
1 AAACCGGGCTAAGTCCCGAAGGCATTTG
51177071 AGTGAGTAGT
Statistics
Matches: 99, Mismatches: 6, Indels: 6
0.89 0.05 0.05
Matches are distributed among these distances:
78 3 0.03
79 32 0.32
80 60 0.61
81 4 0.04
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (79 bp):
AAACCGGGCTAAGTCCCGAAGGCATTTGCGCGAGTGACTAATCTGGGCTAAGTCCCGAAGGCATC
TGTGCGAGTTACTC
Found at i:51184908 original size:40 final size:40
Alignment explanation
Indices: 51184813--51185003 Score: 208
Period size: 40 Copynumber: 4.8 Consensus size: 40
51184803 TGGATGAAAA
* * * *
51184813 CCGGGCTAAGTCCTGAAGGCATCTGCGCTAGTGACT-AAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
* * *
51184852 CTGGGCTAAGTCCCGAAGGCATCTATGCGAGTTACTAAAC
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
*
51184892 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
* * *
51184932 CTGGGCTAAGTCCCGTAGGCAAT-TGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGC-ATCTGTGCGAGTTACT-AAAT
* * * *
51184972 CCGGGCTATGTCGCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGT
51185004 AGTTAAATCC
Statistics
Matches: 129, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
39 32 0.25
40 93 0.72
41 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATCTGTGCGAGTTACTAAAT
Found at i:51184961 original size:80 final size:79
Alignment explanation
Indices: 51184810--51185003 Score: 248
Period size: 80 Copynumber: 2.4 Consensus size: 79
51184800 ATTTGGATGA
* * * *
51184810 AAACCGGGCTAAGTCCTGAAGGCATCTGCGCTAGTGACTAATCTGGGCTAAGTCCCGAAGGCATC
1 AAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTAATCTGGGCTAAGTCCCGAAGGCATC
51184875 TATGCGAGTTACT-
66 TATGCGAGTTACTC
* * *
51184888 AAACCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCTGGGCTAAGTCCCGTAGGCA
1 AAA-CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACT-AATCTGGGCTAAGTCCCGAAGGC-
*
51184953 AT-TGTGCGAGTTACTC
63 ATCTATGCGAGTTACTC
* * *
51184969 TAACCGGGCTATGTCGCGAAGGCATTTGAGCGAGT
1 AAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
51185004 AGTTAAATCC
Statistics
Matches: 101, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
78 3 0.03
79 31 0.31
80 63 0.62
81 4 0.04
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
AAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTAATCTGGGCTAAGTCCCGAAGGCATC
TATGCGAGTTACTC
Found at i:51187553 original size:25 final size:24
Alignment explanation
Indices: 51187525--51187603 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 24
51187515 TCTTACGAGG
51187525 TTATCATACTTCAGCTCGGAGGAGC
1 TTATCATA-TTCAGCTCGGAGGAGC
* * **
51187550 TTATCGTTGTTCAGCTTAGAGGAGC
1 TTATC-ATATTCAGCTCGGAGGAGC
51187575 TTA-CTATTATTCAGCTCGGAAGG-GC
1 TTATC-A-TATTCAGCTCGG-AGGAGC
51187600 TTAT
1 TTAT
51187604 AGTTTACAGC
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
24 1 0.02
25 36 0.88
26 4 0.10
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (24 bp):
TTATCATATTCAGCTCGGAGGAGC
Found at i:51195055 original size:25 final size:25
Alignment explanation
Indices: 51195025--51195109 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
51195015 TTCAAACCAG
51195025 AGGAGCTTACTGTTATTTAGCTCGTA
1 AGGAGCTTACTGTTATTTAGCTCG-A
** * *
51195051 A-GAGCTTACCCTTATTCAGCTTGA
1 AGGAGCTTACTGTTATTTAGCTCGA
* * *
51195075 AGGAGTTTACTGTTATTTAGCTTGG
1 AGGAGCTTACTGTTATTTAGCTCGA
51195100 AGGAGCTTAC
1 AGGAGCTTAC
51195110 CGTTTACAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
24 2 0.04
25 45 0.94
26 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (25 bp):
AGGAGCTTACTGTTATTTAGCTCGA
Found at i:51195057 original size:50 final size:50
Alignment explanation
Indices: 51194990--51195113 Score: 142
Period size: 50 Copynumber: 2.5 Consensus size: 50
51194980 GGGTACTGAT
* *
51194990 TTTAGCTCATATGAGCTTACCGTTATTCAAACCAG-AGGAGCTTACTGTTA
1 TTTAGCTCGTAAGAGCTTACCGTTATTC-AACCAGAAGGAGCTTACTGTTA
* * ** *
51195040 TTTAGCTCGTAAGAGCTTACCCTTATTCAGCTTGAAGGAGTTTACTGTTA
1 TTTAGCTCGTAAGAGCTTACCGTTATTCAACCAGAAGGAGCTTACTGTTA
* * *
51195090 TTTAGCTTGGAGGAGCTTACCGTT
1 TTTAGCTCGTAAGAGCTTACCGTT
51195114 TACAACTCGT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
49 3 0.05
50 59 0.95
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (50 bp):
TTTAGCTCGTAAGAGCTTACCGTTATTCAACCAGAAGGAGCTTACTGTTA
Found at i:51196725 original size:6 final size:6
Alignment explanation
Indices: 51196714--51196882 Score: 118
Period size: 6 Copynumber: 27.8 Consensus size: 6
51196704 AACCAAAATG
* *
51196714 AGAATC AGAATC AGAATC AGTAA-C AGAATC A-ATATT AGTAA-C AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGA-ATC AG-AATC AGAATC
* * *
51196762 AGAATC AGAATC AAAATT AG-GTGAC AGAATC AGAATC AGAATC AGTAA-C
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AG-AATC
* * * *
51196811 AGAATC AGAACC AGTATT AGTAA-C AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
51196859 AGGTGAT- AGAATC AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
51196883 GTGAATGCAA
Statistics
Matches: 128, Mismatches: 19, Indels: 32
0.72 0.11 0.18
Matches are distributed among these distances:
5 12 0.09
6 102 0.80
7 10 0.08
8 4 0.03
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:51196845 original size:79 final size:73
Alignment explanation
Indices: 51196714--51196882 Score: 257
Period size: 79 Copynumber: 2.2 Consensus size: 73
51196704 AACCAAAATG
*
51196714 AGAATCAGAATCAGAATCAGTAACAGAATCAATATTAGTAACAGAATTAGAATCAGAATCAAAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAAAAT
51196779 TAGGTGAC
66 TAGGTGAC
51196787 AGAATCAGAATCAGAATCAGTAACAGAATCAGAACCAGTATTAGTAACAGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATC---A--A-TATTAGTAACAGAATCAGAATCAGAAT
* *
51196852 CAGAATTAGGTGAT
60 CAAAATTAGGTGAC
51196866 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
51196883 GTGAATGCAA
Statistics
Matches: 87, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
73 30 0.34
76 1 0.01
78 1 0.01
79 55 0.63
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.21
Consensus pattern (73 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAATATTAGTAACAGAATCAGAATCAGAATCAAAAT
TAGGTGAC
Found at i:51197029 original size:26 final size:26
Alignment explanation
Indices: 51197000--51197065 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
51196990 AGCATGGCTG
*
51197000 CCAGAACAGATATCATGACAGAGTCA
1 CCAGAACAGATATCATGACAGAGCCA
* ** **
51197026 CCAGATACAGACATTGTGGTAGAGCCA
1 CCAGA-ACAGATATCATGACAGAGCCA
51197053 CCAGAACAGATAT
1 CCAGAACAGATAT
51197066 TTGTGGCATA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
26 12 0.38
27 20 0.62
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCATGACAGAGCCA
Found at i:51197049 original size:27 final size:27
Alignment explanation
Indices: 51197019--51197086 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
51197009 ATATCATGAC
*
51197019 AGAGTCACCAGATACAGACA-TTGTGGT
1 AGAGCCACCAGA-ACAGACATTTGTGGT
* *
51197046 AGAGCCACCAGAACAGATATTTGTGGC
1 AGAGCCACCAGAACAGACATTTGTGGT
*
51197073 ATAGCCACCAGAAC
1 AGAGCCACCAGAAC
51197087 GCTTCCTCCC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 6 0.17
27 30 0.83
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.18
Consensus pattern (27 bp):
AGAGCCACCAGAACAGACATTTGTGGT
Found at i:51197385 original size:27 final size:27
Alignment explanation
Indices: 51197346--51197486 Score: 201
Period size: 27 Copynumber: 5.2 Consensus size: 27
51197336 TAGTGTTTTA
*
51197346 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
51197373 ATAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
51197400 GTAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
51197427 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * * * *
51197454 ATTATTCTATCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
51197481 GTAATT
1 GTAATT
51197487 TCACAATCGA
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:51197538 original size:27 final size:27
Alignment explanation
Indices: 51197491--51197697 Score: 159
Period size: 27 Copynumber: 7.3 Consensus size: 27
51197481 GTAATTTCAC
* *
51197491 AATCGAGGATAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* * *
51197518 AA-CTGAGGGAAAAATGGTAATTTTTTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
**
51197545 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTTTGTA
51197572 AATCGAGGGTAAAACGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAAC---GGT---A-A-T--TT-TGTA
*
51197610 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
* *
51197637 AATCGAGGGTAAAATGGTAAATTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
* *
51197664 AA-CTAAGGGTAAAACGATAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
51197691 AATCGAG
1 AATCGAG
51197698 AGTACTTTGG
Statistics
Matches: 143, Mismatches: 20, Indels: 34
0.73 0.10 0.17
Matches are distributed among these distances:
26 2 0.01
27 107 0.75
28 4 0.03
30 4 0.03
31 1 0.01
32 1 0.01
33 1 0.01
34 1 0.01
35 4 0.03
37 3 0.02
38 15 0.10
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:51197566 original size:54 final size:54
Alignment explanation
Indices: 51197495--51197697 Score: 176
Period size: 54 Copynumber: 3.6 Consensus size: 54
51197485 TTTCACAATC
*
51197495 GAGGATAAAACGATAATTTTGTAAA-CTGAGGGAAAAATGGTAATTTTTTAAA-T
1 GAGGGTAAAACGATAATTTTGTAAATC-GAGGGAAAAATGGTAATTTTTTAAACT
* ** *
51197548 CGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGAGGGTAAAATAGTAATTCTGTAAAC
1 -GAGGGTAAAACGATAATTTTGTAAATCGAGGG-AAAA--ATGGT--AAT--T--TT-T-TAAAC
51197613 T
54 T
* * * * *
51197614 GAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAAATTTGTAAACT
1 GAGGGTAAAACGATAATTTTGTAAATCGAGGGAAAAATGGTAATTTTTTAAACT
*
51197668 AAGGGTAAAACGATAATTTTGTAAATCGAG
1 GAGGGTAAAACGATAATTTTGTAAATCGAG
51197698 AGTACTTTGG
Statistics
Matches: 121, Mismatches: 15, Indels: 26
0.75 0.09 0.16
Matches are distributed among these distances:
54 59 0.49
55 5 0.04
56 2 0.02
57 4 0.03
58 1 0.01
59 3 0.02
60 2 0.02
61 1 0.01
62 4 0.03
63 2 0.02
64 4 0.03
65 33 0.27
66 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (54 bp):
GAGGGTAAAACGATAATTTTGTAAATCGAGGGAAAAATGGTAATTTTTTAAACT
Found at i:51197603 original size:38 final size:38
Alignment explanation
Indices: 51197543--51197625 Score: 98
Period size: 38 Copynumber: 2.2 Consensus size: 38
51197533 GGTAATTTTT
* *
51197543 TAAATCGAGGGTAAAACGGTAATT-T-TACAAATCGAGGG
1 TAAAACGAGGGTAAAACAGTAATTCTGTA-AAAT-GAGGG
* *
51197581 TAAAACGAGGGTAAAATAGTAATTCTGTAAACTGAGGG
1 TAAAACGAGGGTAAAACAGTAATTCTGTAAAATGAGGG
51197619 TAAAACG
1 TAAAACG
51197626 GTAATTCTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 33 0.85
39 4 0.10
40 2 0.05
ACGTcount: A:0.42, C:0.10, G:0.25, T:0.23
Consensus pattern (38 bp):
TAAAACGAGGGTAAAACAGTAATTCTGTAAAATGAGGG
Found at i:51197619 original size:65 final size:66
Alignment explanation
Indices: 51197517--51197650 Score: 182
Period size: 65 Copynumber: 2.0 Consensus size: 66
51197507 ATAATTTTGT
* * * *
51197517 AAACTGAGGGAAAAATGGTAATTTTTTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGT
1 AAACTGAGGGAAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAATCGAGGGT
51197582 A
66 A
* **
51197583 AAAC-GAGGGTAAAATAGTAATTCTGTAAA-CTGAGGGTAAAACGGTAATTCTGTAAATCGAGGG
1 AAACTGAGGGAAAAATAGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTCTACAAATCGAGGG
51197646 TA
65 TA
51197648 AAA
1 AAA
51197651 TGGTAAATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
64 1 0.02
65 55 0.92
66 4 0.07
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (66 bp):
AAACTGAGGGAAAAATAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTACAAATCGAGGGT
A
Found at i:51197673 original size:92 final size:92
Alignment explanation
Indices: 51197508--51197680 Score: 242
Period size: 92 Copynumber: 1.9 Consensus size: 92
51197498 GATAAAACGA
* * * *
51197508 TAATTTTGTAAACTGAGGGAAAAATGGTAATTTTTTAAATCGAGGGTAAAACGGTAATTTTACAA
1 TAATTCTGTAAACTGAGGGAAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAA
*
51197573 ATCGAGGGTAAAACGAGGGTAAAATAG
66 ATCAAGGGTAAAACGAGGGTAAAATAG
* *
51197600 TAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAAATTTGTA-
1 TAATTCTGTAAACTGAGGGAAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGT-AATTT-TAC
*
51197664 AACT-AAGGGTAAAACGA
64 AAATCAAGGGTAAAACGA
51197681 TAATTTTGTA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
92 61 0.86
93 8 0.11
94 2 0.03
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.28
Consensus pattern (92 bp):
TAATTCTGTAAACTGAGGGAAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAA
ATCAAGGGTAAAACGAGGGTAAAATAG
Found at i:51198189 original size:18 final size:18
Alignment explanation
Indices: 51198166--51198202 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
51198156 ACTCTTATGT
51198166 TAGCTTCCCGATGCGGGA
1 TAGCTTCCCGATGCGGGA
51198184 TAGCTTCCCGATGCGGGA
1 TAGCTTCCCGATGCGGGA
51198202 T
1 T
51198203 CCCTCCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.27, G:0.32, T:0.24
Consensus pattern (18 bp):
TAGCTTCCCGATGCGGGA
Found at i:51199716 original size:18 final size:17
Alignment explanation
Indices: 51199688--51199721 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
51199678 GACCTTAGCC
51199688 CATTACAGAATAAGAAA
1 CATTACAGAATAAGAAA
*
51199705 CATTATCAGAATTAGAA
1 CATTA-CAGAATAAGAA
51199722 CCAAAATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
CATTACAGAATAAGAAA
Found at i:51199739 original size:6 final size:6
Alignment explanation
Indices: 51199709--51199916 Score: 133
Period size: 6 Copynumber: 34.3 Consensus size: 6
51199699 AAGAAACATT
* * * *
51199709 ATCAGA ATTAGA ACCAAA ATGAGA ATCAGA ATCAGA ATCAGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAG-A ATCAGA
* * * *
51199757 ATCAGA ATTAGA ATCA-A TATTAGTA A-CAGA ATTAGA ATCAGA ATCAAA
1 ATCAGA ATCAGA ATCAGA -ATCAG-A ATCAGA ATCAGA ATCAGA ATCAGA
* * *
51199805 ATTAG- GTGACAGA ATCAGA ACCAGA ATCAGTA A-CAGA ATCAGA ATCAGA
1 ATCAGA AT--CAGA ATCAGA ATCAGA ATCAG-A ATCAGA ATCAGA ATCAGA
* * * * * *
51199854 ATTAGT ATTAGTA A-CAGA ATCAAA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATCAG-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
51199903 ATCAGA ATCAGA AT
1 ATCAGA ATCAGA AT
51199917 GTGAATGCAA
Statistics
Matches: 154, Mismatches: 32, Indels: 32
0.71 0.15 0.15
Matches are distributed among these distances:
5 11 0.07
6 130 0.84
7 10 0.06
8 3 0.02
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:51199745 original size:30 final size:30
Alignment explanation
Indices: 51199709--51199916 Score: 216
Period size: 30 Copynumber: 7.1 Consensus size: 30
51199699 AAGAAACATT
* *
51199709 ATCAGAATTAG-AACCAAAATGAGAATCAGA
1 ATCAGAATTAGTAA-CAGAATCAGAATCAGA
* *
51199739 ATCAGAATCAGTAACAGAATCAGAATTAGA
1 ATCAGAATTAGTAACAGAATCAGAATCAGA
*
51199769 ATCA-ATATTAGTAACAGAATTAGAATCAGA
1 ATCAGA-ATTAGTAACAGAATCAGAATCAGA
*
51199799 ATCAAAATTAGGT----G-A-CAGAATCAGA
1 ATCAGAATTA-GTAACAGAATCAGAATCAGA
* *
51199824 ACCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAATTAGTAACAGAATCAGAATCAGA
* * *
51199854 ATTAGTATTAGTAACAGAATCAAAATCAGA
1 ATCAGAATTAGTAACAGAATCAGAATCAGA
*
51199884 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATTA-GTAACAGAATCAGAATCAGA
51199915 AT
1 AT
51199917 GTGAATGCAA
Statistics
Matches: 147, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
24 2 0.01
25 16 0.11
26 1 0.01
27 1 0.01
28 1 0.01
29 2 0.01
30 99 0.67
31 25 0.17
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.21
Consensus pattern (30 bp):
ATCAGAATTAGTAACAGAATCAGAATCAGA
Found at i:51199830 original size:85 final size:85
Alignment explanation
Indices: 51199730--51199916 Score: 311
Period size: 85 Copynumber: 2.2 Consensus size: 85
51199720 AACCAAAATG
* * *
51199730 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATTAGAATCAATATTAGTAACAGAATTAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
51199795 CAGAATCAAAATTAGGTGAC
66 CAGAATCAAAATTAGGTGAC
* * *
51199815 AGAATCAGAACCAGAATCAGTAACAGAATCAGAATCAGAATTAGTATTAGTAACAGAATCAAAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
*
51199880 CAGAATCAGAATTAGGTGAC
66 CAGAATCAAAATTAGGTGAC
51199900 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
51199917 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAACAGAATCAAAAT
CAGAATCAAAATTAGGTGAC
Found at i:51200082 original size:27 final size:26
Alignment explanation
Indices: 51200034--51200120 Score: 111
Period size: 27 Copynumber: 3.3 Consensus size: 26
51200024 AGCATGGCTG
* * *
51200034 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
51200060 CCAGATACAGACATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
51200087 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
51200114 CCAGAAC
1 CCAGAAC
51200121 GCTTCCTCCG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 11 0.21
27 42 0.79
ACGTcount: A:0.36, C:0.25, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:51200515 original size:81 final size:81
Alignment explanation
Indices: 51200380--51200574 Score: 336
Period size: 81 Copynumber: 2.4 Consensus size: 81
51200370 TAGTGTTTTA
51200380 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTGCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTGCGGTAATTCTACC
*
51200445 CTATAGGGGTATTTCG
66 CTACAGGGGTATTTCG
** *
51200461 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGGGTATTGCGGTAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTGCGGTAATTCTACC
51200526 CTACAGGGGTATTTCG
66 CTACAGGGGTATTTCG
* *
51200542 GTAATTCTATCCTACAAGGGTATTTCAATAATT
1 GTAATTCTACCCTACAGGGGTATTTCAATAATT
51200575 TCACAATCGA
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTGCGGTAATTCTACC
CTACAGGGGTATTTCG
Found at i:51200574 original size:27 final size:27
Alignment explanation
Indices: 51200380--51200567 Score: 304
Period size: 27 Copynumber: 7.0 Consensus size: 27
51200370 TAGTGTTTTA
*
51200380 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
51200407 ATAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
51200434 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
51200461 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
51200488 GTAATTCTACCTTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
51200515 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
51200542 GTAATTCTATCCTACAAGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
51200568 AATAATTTCA
Statistics
Matches: 148, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:51200688 original size:81 final size:81
Alignment explanation
Indices: 51200570--51200830 Score: 330
Period size: 81 Copynumber: 3.2 Consensus size: 81
51200560 GGTATTTCAA
* * * * *
51200570 TAATTTCAC-AATCGAGGATAAAACGATAATTTTGTAAACTAAGGGTAAAATGGTAATTTTGTAA
1 TAATTTTACAAATCGAGGGTAAAATGGTAATTTTGTAAACTAAGGGTAAAATGGTAATTCTGTAA
51200634 ATCGAGGGTAAAACGG
66 ATCGAGGGTAAAACGG
* * *
51200650 TAATTTTACAAATCGAGGGTAAAATGGTAATTCTGTAAA-TCAAGGGTAAAATAGTAATTCCGTA
1 TAATTTTACAAATCGAGGGTAAAATGGTAATTTTGTAAACT-AAGGGTAAAATGGTAATTCTGTA
51200714 AA-CTGAGGGTAAAACGG
65 AATC-GAGGGTAAAACGG
** *
51200731 TAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTAA
1 TAATTTTACAAATCGAGGGTAAAATGGTAATTTTGTAAACTAAGGGTAAAATGGTAATTCTGTAA
* ****
51200796 ATCGAGAGTACGTTGG
66 ATCGAGGGTAAAACGG
*
51200812 TAATTTTACAAGTCGAGGG
1 TAATTTTACAAATCGAGGG
51200831 CATTTCAATA
Statistics
Matches: 154, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
80 10 0.06
81 142 0.92
82 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.30
Consensus pattern (81 bp):
TAATTTTACAAATCGAGGGTAAAATGGTAATTTTGTAAACTAAGGGTAAAATGGTAATTCTGTAA
ATCGAGGGTAAAACGG
Found at i:51200816 original size:27 final size:27
Alignment explanation
Indices: 51200579--51200801 Score: 272
Period size: 27 Copynumber: 8.3 Consensus size: 27
51200569 ATAATTTCAC
* * *
51200579 AATCGAGGATAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
51200606 AA-CTAAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* **
51200633 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
51200660 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * **
51200687 AATCAAGGGTAAAATAGTAATTCCGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
51200714 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
51200741 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
*
51200768 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
51200795 AATCGAG
1 AATCGAG
51200802 AGTACGTTGG
Statistics
Matches: 168, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.02
27 162 0.96
28 3 0.02
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:51200818 original size:54 final size:54
Alignment explanation
Indices: 51200579--51200801 Score: 304
Period size: 54 Copynumber: 4.1 Consensus size: 54
51200569 ATAATTTCAC
* * * * *
51200579 AATCGAGGATAAAACGATAATTTTGTAAACTAAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
* **
51200633 AATCGAGGGTAAAACGGTAATTTTACAAA-TCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAACT-GAGGGTAAAATGGTAATTCTGTA
* * ** * *
51200687 AATCAAGGGTAAAATAGTAATTCCGTAAACTGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
51200741 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
51200795 AATCGAG
1 AATCGAG
51200802 AGTACGTTGG
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
53 1 0.01
54 144 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTGTA
Found at i:51202821 original size:6 final size:6
Alignment explanation
Indices: 51202810--51202996 Score: 143
Period size: 6 Copynumber: 30.8 Consensus size: 6
51202800 AACCAAAATG
* *
51202810 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AAAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
* * * * * * *
51202858 AGTAA-C ATAATT AGAATC AAAATC AAAATT AG-GTGAC AGAATC AGAATT
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
51202907 AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC AGAATC
* *
51202955 AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
51202997 GTGAATGCAA
Statistics
Matches: 143, Mismatches: 24, Indels: 28
0.73 0.12 0.14
Matches are distributed among these distances:
5 10 0.07
6 120 0.84
7 11 0.08
8 2 0.01
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:51202862 original size:30 final size:30
Alignment explanation
Indices: 51202810--51202996 Score: 224
Period size: 30 Copynumber: 6.4 Consensus size: 30
51202800 AACCAAAATG
*
51202810 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* * *
51202840 AGAATCAGAATCAAAATTAGTAACATAATT
1 AGAATCAGAATCAGAATTAGTAACAGAATC
* *
51202870 AGAATCAAAATCAAAATTAGGT----G-A-C
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
* *
51202895 AGAATCAGAATTAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
51202925 AGAATCAGAATCAGTATTAGTAACAGAATC
1 AGAATCAGAATCAGAATTAGTAACAGAATC
*
51202955 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTA-GTAACAGAATC
51202986 AGAATCAGAAT
1 AGAATCAGAAT
51202997 GTGAATGCAA
Statistics
Matches: 133, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
24 2 0.02
25 15 0.11
26 1 0.01
28 1 0.01
29 1 0.01
30 90 0.68
31 23 0.17
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGTAACAGAATC
Found at i:51202911 original size:85 final size:85
Alignment explanation
Indices: 51202810--51202996 Score: 311
Period size: 85 Copynumber: 2.2 Consensus size: 85
51202800 AACCAAAATG
* *
51202810 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAAAATTAGTAACATAATTAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAAAATTAGTAACAGAATCAGAAT
51202875 CAAAATCAAAATTAGGTGAC
66 CAAAATCAAAATTAGGTGAC
* **
51202895 AGAATCAGAATTAGAATCAGTAACAGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAAT
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAAAATTAGTAACAGAATCAGAAT
* *
51202960 CAGAATCAGAATTAGGTGAC
66 CAAAATCAAAATTAGGTGAC
51202980 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
51202997 GTGAATGCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.21
Consensus pattern (85 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAAAATTAGTAACAGAATCAGAAT
CAAAATCAAAATTAGGTGAC
Found at i:51203183 original size:27 final size:26
Alignment explanation
Indices: 51203114--51203200 Score: 93
Period size: 27 Copynumber: 3.3 Consensus size: 26
51203104 AGCATGGCTG
* * *
51203114 CCAGAACAGATATCGTGATAGAGTCA
1 CCAGAACAGATATTGTGGTAGAGCCA
*
51203140 CCAGATACAGACATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGTAGAGCCA
* * *
51203167 CCAGAATAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGTAGAGCCA
51203194 CCAGAAC
1 CCAGAAC
51203201 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
26 10 0.20
27 40 0.80
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGTAGAGCCA
Found at i:51203499 original size:27 final size:27
Alignment explanation
Indices: 51203460--51203654 Score: 318
Period size: 27 Copynumber: 7.2 Consensus size: 27
51203450 TAGTGTTTTA
*
51203460 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
51203487 ATAATTCTACCCTACAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
51203514 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
51203541 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
51203568 GTAATTCTACCCTATAGGGGTATTGCG
1 GTAATTCTACCCTACAGGGGTATTTCG
51203595 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* * *
51203622 GTAATTCTATCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
51203649 GTAATT
1 GTAATT
51203655 TCACAATCGA
Statistics
Matches: 156, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:51203721 original size:27 final size:27
Alignment explanation
Indices: 51203659--51203909 Score: 276
Period size: 27 Copynumber: 9.3 Consensus size: 27
51203649 GTAATTTCAC
* * *
51203659 AATCGAGGATAAAACGATAATTGTTGTA
1 AATCGAGGGTAAAACGGTAATT-CTGTA
* *
51203687 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
51203714 AATCGAGGGTAAAACGGCAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * *
51203741 AATCGAGGATAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
51203768 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
51203795 AA-CTGAGGGTAAAACAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
51203822 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
51203849 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
51203876 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
51203903 AATCGAG
1 AATCGAG
51203910 AGTACTTTGG
Statistics
Matches: 195, Mismatches: 22, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
26 2 0.01
27 173 0.89
28 20 0.10
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:51203896 original size:81 final size:81
Alignment explanation
Indices: 51203659--51203909 Score: 335
Period size: 81 Copynumber: 3.1 Consensus size: 81
51203649 GTAATTTCAC
* * * *
51203659 AATCGAGGATAAAACGATAATTGTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAA-TCGAGGG
1 AATCGAGGATAAAATGGTAATT-TTGTAAACTGAGGGTAAAACGGTAATTCTGTAAACT-GAGGG
* * **
51203723 TAAAACGGCAATTTTACA
64 TAAAACGGTAATTCTGTA
* * *
51203741 AATCGAGGATAAAATGGTAATTCTATAAA-TCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGT
1 AATCGAGGATAAAATGGTAATTTTGTAAACT-GAGGGTAAAACGGTAATTCTGTAAACTGAGGGT
*
51203805 AAAACAGTAATTCTGTA
65 AAAACGGTAATTCTGTA
*
51203822 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
1 AATCGAGGATAAAATGGTAATTTTGTAAACTGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
*
51203887 AAATGGTAATTCTGTA
66 AAACGGTAATTCTGTA
51203903 AATCGAG
1 AATCGAG
51203910 AGTACTTTGG
Statistics
Matches: 148, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
80 1 0.01
81 125 0.84
82 22 0.15
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
AATCGAGGATAAAATGGTAATTTTGTAAACTGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
AAACGGTAATTCTGTA
Found at i:51203937 original size:81 final size:80
Alignment explanation
Indices: 51203659--51203938 Score: 301
Period size: 81 Copynumber: 3.4 Consensus size: 80
51203649 GTAATTTCAC
* * * * * *
51203659 AATCGAGGATAAAACGATAATTGTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAA-TCGAGGG
1 AATCGAGG-TAAAATGGTAATT-TTATAAATTGAGGGTAAAACGGTAATTCTGTAAACT-GAGGG
* * **
51203723 TAAAACGGCAATTTTACA
63 TAAAACGGTAATTCTGTA
* * *
51203741 AATCGAGGATAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTA
1 AATCGAGG-TAAAATGGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
*
51203806 AAACAGTAATTCTGTA
65 AAACGGTAATTCTGTA
* *
51203822 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
1 AATCGA-GGTAAAATGGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTA
*
51203887 AAATGGTAATTCTGTA
65 AAACGGTAATTCTGTA
*** * *
51203903 AATCGAGAGTACTTTGGTAATTTTACAAGTTGAGGG
1 AATCGAG-GTAAAATGGTAATTTTATAAATTGAGGG
51203939 CATTTCAGTA
Statistics
Matches: 167, Mismatches: 28, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
80 1 0.01
81 143 0.86
82 23 0.14
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.29
Consensus pattern (80 bp):
AATCGAGGTAAAATGGTAATTTTATAAATTGAGGGTAAAACGGTAATTCTGTAAACTGAGGGTAA
AACGGTAATTCTGTA
Found at i:51213244 original size:39 final size:39
Alignment explanation
Indices: 51213190--51213274 Score: 170
Period size: 39 Copynumber: 2.2 Consensus size: 39
51213180 CACTGTCAAG
51213190 CTATCGCTATTGGTGTAAGTGATTTCAAATACTTTGAGT
1 CTATCGCTATTGGTGTAAGTGATTTCAAATACTTTGAGT
51213229 CTATCGCTATTGGTGTAAGTGATTTCAAATACTTTGAGT
1 CTATCGCTATTGGTGTAAGTGATTTCAAATACTTTGAGT
51213268 CTATCGC
1 CTATCGC
51213275 ATGTATAGGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (39 bp):
CTATCGCTATTGGTGTAAGTGATTTCAAATACTTTGAGT
Found at i:51213292 original size:33 final size:39
Alignment explanation
Indices: 51213190--51213299 Score: 153
Period size: 39 Copynumber: 3.0 Consensus size: 39
51213180 CACTGTCAAG
*
51213190 CTATCGCTATTGGTGTAAGTGATTTCAAATACTTTGAGT
1 CTATCGCTATTGGTATAAGTGATTTCAAATACTTTGAGT
*
51213229 CTATCGCTATTGGTGTAAGTGATTTCAAATACTTTGAGT
1 CTATCGCTATTGGTATAAGTGATTTCAAATACTTTGAGT
51213268 CTATCGC-A-T-GTAT-AG-GATTT-AAATA-TTTGAGT
1 CTATCGCTATTGGTATAAGTGATTTCAAATACTTTGAGT
51213300 ATGTGATATT
Statistics
Matches: 70, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
32 7 0.10
33 5 0.07
34 5 0.07
35 2 0.03
36 3 0.04
37 1 0.01
38 1 0.01
39 46 0.66
ACGTcount: A:0.27, C:0.12, G:0.20, T:0.41
Consensus pattern (39 bp):
CTATCGCTATTGGTATAAGTGATTTCAAATACTTTGAGT
Found at i:51215056 original size:58 final size:58
Alignment explanation
Indices: 51214988--51215185 Score: 254
Period size: 58 Copynumber: 3.4 Consensus size: 58
51214978 AACAAATTTG
* * * *
51214988 TACTTGAGAAAAATTTGAAAGAGAACCAACTG-GAGATGTGAATCTGCAAGCTGGTTTA
1 TACTTAAGAAAAATTTGAAAGATAGCCAACTGAG-GATGTGAATCTGCAAGCTGTTTTA
* *
51215046 TACTTAAGAAAAGTTTGAAAGATAGCCAACTGAGGATGTGAGTCTGCAAGCTGTTTTA
1 TACTTAAGAAAAATTTGAAAGATAGCCAACTGAGGATGTGAATCTGCAAGCTGTTTTA
* * * * ** * *
51215104 TACTTAAGAAAAATTTGAAAGATAGCTAGCTAAGGATGTGAACCCACGAGCTATTTTA
1 TACTTAAGAAAAATTTGAAAGATAGCCAACTGAGGATGTGAATCTGCAAGCTGTTTTA
51215162 TACTTAAGAAAAATTTGAAAGATA
1 TACTTAAGAAAAATTTGAAAGATA
51215186 ATATAGTTGG
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
58 122 0.99
59 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (58 bp):
TACTTAAGAAAAATTTGAAAGATAGCCAACTGAGGATGTGAATCTGCAAGCTGTTTTA
Found at i:51215407 original size:69 final size:69
Alignment explanation
Indices: 51215188--51215536 Score: 387
Period size: 69 Copynumber: 5.0 Consensus size: 69
51215178 GAAAGATAAT
* * *
51215188 ATAGTTGGGAGTTTTTGACTCTCGCTAACTATGTTGGAGGCTACGGTGTTTATCCTACGAGCCTT
1 ATAGTTGGGAG-TTTTG-CTCTCACTAACTATGTTGGAGGCTACGATTTTTATCCTACGAGCCTT
*
51215253 AGTATG
64 AATATG
* * * *
51215259 ACAGTTGGGAGTTTTGCTCTCACTAACTATGTTGGAGGTTACAGTTTTTTATCCTATGAGCCTTA
1 ATAGTTGGGAGTTTTGCTCTCACTAACTATGTTGGAGGCTAC-GATTTTTATCCTACGAGCCTTA
51215324 ATATG
65 ATATG
* ** * *
51215329 ACAAG-TGGGAGCTTTT-CTCTCAAAAACTATGTTAGAGGCTGCGATTTTTATCCTACGAGCCTT
1 A-TAGTTGGGAG-TTTTGCTCTCACTAACTATGTTGGAGGCTACGATTTTTATCCTACGAGCCTT
*
51215392 ATTATG
64 AATATG
* * * * * * * *
51215398 ATAGCTGGGAGCTTTGCTCTCGCTAATTGTGTTGGAGACTACAATTTTTATCCTATGAGCCTTAA
1 ATAGTTGGGAGTTTTGCTCTCACTAACTATGTTGGAGGCTACGATTTTTATCCTACGAGCCTTAA
51215463 TATG
66 TATG
* * * * * *
51215467 ATAGTTGAGAGTTTTGCTCTCGCTAACTGTGTTGGAGGCTACAATTATTATCCTGCGAGCCTTAA
1 ATAGTTGGGAGTTTTGCTCTCACTAACTATGTTGGAGGCTACGATTTTTATCCTACGAGCCTTAA
51215532 TATG
66 TATG
51215536 A
1 A
51215537 CATAAAGGAT
Statistics
Matches: 236, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
68 5 0.02
69 159 0.67
70 56 0.24
71 16 0.07
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (69 bp):
ATAGTTGGGAGTTTTGCTCTCACTAACTATGTTGGAGGCTACGATTTTTATCCTACGAGCCTTAA
TATG
Found at i:51219110 original size:40 final size:40
Alignment explanation
Indices: 51218829--51219096 Score: 484
Period size: 40 Copynumber: 6.7 Consensus size: 40
51218819 ATTCGGATTG
51218829 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51218868 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51218908 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51218948 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51218988 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51219028 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51219068 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
51219097 AGCTAGTAGC
Statistics
Matches: 218, Mismatches: 10, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
39 13 0.06
40 205 0.94
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51223964 original size:28 final size:29
Alignment explanation
Indices: 51223927--51223992 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
51223917 TAAAGTGATT
*
51223927 TTGAGTAAAAATGTATATT-AGGGATTAAA
1 TTGAG-AAAAATGTAAATTAAGGGATTAAA
* *
51223956 TTGAGAAAAGTGTAAATTAAGGGGTTAAA
1 TTGAGAAAAATGTAAATTAAGGGATTAAA
*
51223985 TTGTGAAA
1 TTGAGAAA
51223993 TAAATGAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTAAGGGATTAAA
Found at i:51225309 original size:13 final size:12
Alignment explanation
Indices: 51225282--51225317 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
51225272 TAGATATGTT
51225282 TTGGTTGTAGAA
1 TTGGTTGTAGAA
*
51225294 TTGGTTAGTTGAA
1 TTGGTT-GTAGAA
51225307 TTGGTTGTAGA
1 TTGGTTGTAGA
51225318 TAGATGGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.44
Consensus pattern (12 bp):
TTGGTTGTAGAA
Found at i:51232397 original size:27 final size:27
Alignment explanation
Indices: 51232367--51232418 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
51232357 CCCAAATTGA
*
51232367 TAAAATAACTATTATGCCCCTATGAGG
1 TAAAATAACTAATATGCCCCTATGAGG
* *
51232394 TAAAATGACTAATATGCCCTTATGA
1 TAAAATAACTAATATGCCCCTATGA
51232419 AATCTATGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.31
Consensus pattern (27 bp):
TAAAATAACTAATATGCCCCTATGAGG
Found at i:51233109 original size:31 final size:31
Alignment explanation
Indices: 51233065--51233126 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
51233055 TTTAATAGAT
* *
51233065 TATCTTTTTGCTCAACAACTTGAGTTTTAAC
1 TATCATTTCGCTCAACAACTTGAGTTTTAAC
*
51233096 TATCATTTCGCTCAACAGCTTGAGTTTTAAC
1 TATCATTTCGCTCAACAACTTGAGTTTTAAC
51233127 AATGAACGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.26, C:0.21, G:0.11, T:0.42
Consensus pattern (31 bp):
TATCATTTCGCTCAACAACTTGAGTTTTAAC
Found at i:51234157 original size:28 final size:29
Alignment explanation
Indices: 51234115--51234180 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
51234105 TAAAGTGATT
*
51234115 TTGAGTAAAAATGTATATT-ACGGATTAAA
1 TTGAG-AAAAATGTAAATTGACGGATTAAA
* * *
51234144 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATTGACGGATTAAA
*
51234173 TTGTGAAA
1 TTGAGAAA
51234181 TAAATGAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 11 0.35
29 20 0.65
ACGTcount: A:0.42, C:0.02, G:0.24, T:0.32
Consensus pattern (29 bp):
TTGAGAAAAATGTAAATTGACGGATTAAA
Found at i:51237363 original size:44 final size:42
Alignment explanation
Indices: 51237217--51237378 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 42
51237207 AACTTGTACA
* * * * *
51237217 ATGCCAACGTCCCAAATATGGTCTTACATGTAATCAAATATCA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
* * *
51237260 ATG-CTACTATCCCAGACAGGGTCTTACACGAAATCAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAAATACG
* * * *
51237302 ATGCCGATGTCCTAGACATGCTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATCA-AA-TACG
51237346 ATGCCAACGTCCCAGACATGGTCTTACACGAAA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAA
51237379 ACACATATCG
Statistics
Matches: 96, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 25 0.26
43 40 0.42
44 30 0.31
45 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:51241782 original size:47 final size:47
Alignment explanation
Indices: 51241710--51241889 Score: 190
Period size: 47 Copynumber: 3.8 Consensus size: 47
51241700 TTATCTATGT
*
51241710 GCTAGTGTAAGA-CATGTCTTGGACATGGCATCGACATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGA-GAGA
* *
51241757 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACACGTAT-AGAG-GT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACA--T-TGAGAGAGA
* * * *
51241804 GTTAGTGTAAAACCATGTCTGGGACATGGCATCGAC-TTGATAGATAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAGA-GA
* * *
51241851 GCTAGTATAAGACCATGACTGGGACATGGCATCGGCATT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATT
51241890 ATACCCTATG
Statistics
Matches: 111, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
44 1 0.01
45 4 0.04
47 75 0.68
48 26 0.23
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAGAGA
Found at i:51241874 original size:95 final size:94
Alignment explanation
Indices: 51241712--51241884 Score: 242
Period size: 95 Copynumber: 1.8 Consensus size: 94
51241702 ATCTATGTGC
* * * * *
51241712 TAGTGTAAGACATGTCTTGGACATGGCATCGACATTGAGACGAGAGCCAGTGTAAGACATGTCTG
1 TAGTGTAAAACATGTCTGGGACATGGCATCGACATTGAGACGAAAGCCAGTATAAGACATGACTG
51241777 GGACATGGCATCGACACGTATAGAGGTGT
66 GGACATGGCATCGACACGTATAGAGGTGT
* *
51241806 TAGTGTAAAACCATGTCTGGGACATGGCATCGAC-TTGATA-GATAAGCTAGTATAAGACCATGA
1 TAGTGTAAAA-CATGTCTGGGACATGGCATCGACATTGAGACGA-AAGCCAGTATAAGA-CATGA
51241869 CTGGGACATGGCATCG
63 CTGGGACATGGCATCG
51241885 GCATTATACC
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
93 2 0.03
94 25 0.36
95 42 0.61
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (94 bp):
TAGTGTAAAACATGTCTGGGACATGGCATCGACATTGAGACGAAAGCCAGTATAAGACATGACTG
GGACATGGCATCGACACGTATAGAGGTGT
Found at i:51246771 original size:46 final size:44
Alignment explanation
Indices: 51246720--51246896 Score: 176
Period size: 46 Copynumber: 3.9 Consensus size: 44
51246710 ATGTTTGGGC
51246720 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
51246764 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* * *
51246813 ATCCGAGCTCATTGAGTTGAGTCCTAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * *
51246858 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51246897 GCAGGTTACA
Statistics
Matches: 107, Mismatches: 17, Indels: 16
0.76 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:51246876 original size:93 final size:93
Alignment explanation
Indices: 51246717--51246889 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
51246707 AGGATGTTTG
* ***
51246717 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
51246782 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
51246810 GGCATCCGAGCTCATTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
51246875 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
51246890 CTTATGGGCA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:51249840 original size:15 final size:15
Alignment explanation
Indices: 51249820--51249872 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
51249810 GTATCTTGGG
51249820 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
51249835 TCTCTTTATTCTGG-
1 TTTCTTTATCCTGGA
* *
51249849 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
51249864 TTTCTTTAT
1 TTTCTTTAT
51249873 TCGGTTTTCT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
14 10 0.33
15 20 0.67
ACGTcount: A:0.11, C:0.19, G:0.11, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:51249882 original size:29 final size:29
Alignment explanation
Indices: 51249818--51249879 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
51249808 TCGTATCTTG
*
51249818 GGTTTCTTTATCCTGGATCTCTTTATTCT
1 GGTTTCTCTATCCTGGATCTCTTTATTCT
* *
51249847 GGTTTCTCTATCTTGGATTTCTTTATTC-
1 GGTTTCTCTATCCTGGATCTCTTTATTCT
51249875 GGTTT
1 GGTTT
51249880 TCTTGTTATC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (29 bp):
GGTTTCTCTATCCTGGATCTCTTTATTCT
Found at i:51252303 original size:46 final size:44
Alignment explanation
Indices: 51252249--51252425 Score: 149
Period size: 46 Copynumber: 3.9 Consensus size: 44
51252239 ATGTTTGGGC
51252249 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
* * *** * *
51252293 ATGTCTGAACTCGTTGAGTTAAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
* * *
51252342 ATCCGAGCTCATTGAGTTGAGTCCTAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* * * *
51252387 CACCCGAGCTCGTTGAGTTGAGTCCTAGTTCGCTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51252426 GCAGGTTACA
Statistics
Matches: 104, Mismatches: 20, Indels: 16
0.74 0.14 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 66 0.63
47 28 0.27
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:51252405 original size:93 final size:93
Alignment explanation
Indices: 51252246--51252418 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
51252236 AGGATGTTTG
* *** *
51252246 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
51252311 TTAAGTCCGAGTTCGAGAGATGTAACTA
66 TTAAGTCCGAGTTCGAGAGATGTAACTA
* * *
51252339 GGCATCCGAGCTCATTGAGTTGAGTCCTAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
* *
51252404 TTGAGTCCTAGTTCG
66 TTAAGTCCGAGTTCG
51252419 CTTATGGGCA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAG
TTAAGTCCGAGTTCGAGAGATGTAACTA
Found at i:51261115 original size:27 final size:27
Alignment explanation
Indices: 51261084--51261628 Score: 494
Period size: 27 Copynumber: 20.3 Consensus size: 27
51261074 GAAAATGCTA
*
51261084 AAATACCCTTGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTACCG
*
51261111 AAATACCCCCGATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTACCG
* * *
51261138 AAATACCTTCGA-TTGTGAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCG
*
51261164 AAATACCC-CTGGTTTGTAAAATTACCG
1 AAATACCCTC-GATTTGTAAAATTACCG
* * *
51261191 AAGTACCCT-TAGTTTGTAAAATTATCG
1 AAATACCCTCGA-TTTGTAAAATTACCG
* *
51261218 AAATACCC-CTGATTTGTAAAATTATCA
1 AAATACCCTC-GATTTGTAAAATTACCG
*
51261245 AAATACCCTCGGTTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTACCG
* * **
51261272 AAGTACCC-CGACTTGTAAAATTACTA
1 AAATACCCTCGATTTGTAAAATTACCG
* * **
51261298 AAATACCCCCGGTTTGTAAAATTACTA
1 AAATACCCTCGATTTGTAAAATTACCG
** * ** **
51261325 AAATA-CCTTTAGTTACAAAATTACTA
1 AAATACCCTCGATTTGTAAAATTACCG
* * **
51261351 AAATACCCTCGATTTTTAGAATTACTA
1 AAATACCCTCGATTTGTAAAATTACCG
* * *
51261378 AAATACCCTCGATTTTTAGAATTACTG
1 AAATACCCTCGATTTGTAAAATTACCG
*
51261405 AAATACCCTCAATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTACCG
* * *
51261432 AAACACCATCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCG
*
51261459 AAATACCCTCAATTTGTAAAATTACCG
1 AAATACCCTCGATTTGTAAAATTACCG
* * ***
51261486 AAATACCCTCAATTTATAAAATTATTA
1 AAATACCCTCGATTTGTAAAATTACCG
*
51261513 AAATACCCTCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCG
* *
51261540 AAACACCCTCGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCG
* * * *
51261567 CAATACCCTTG-TAGTGTAAAATTATCG
1 AAATACCCTCGAT-TTGTAAAATTACCG
* * *
51261594 AAATACCCTTG-TAGTGTAAAATGACCG
1 AAATACCCTCGAT-TTGTAAAATTACCG
*
51261621 ACATACCC
1 AAATACCC
51261629 CTGTAAGGTA
Statistics
Matches: 437, Mismatches: 71, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.00
26 61 0.14
27 373 0.85
28 2 0.00
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (27 bp):
AAATACCCTCGATTTGTAAAATTACCG
Found at i:51261633 original size:27 final size:27
Alignment explanation
Indices: 51261554--51261645 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
51261544 ACCCTCGATT
* * *
51261554 TGTAAAATTATCGCAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* *
51261581 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* *
51261608 TGTAAAATGACCGACATACCCCTGTAAG
1 TGTAAAATGACCGAAATACCCTTGT-AG
51261636 -GTAAAATGAC
1 TGTAAAATGAC
51261646 TGTTTTGCCC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 57 0.97
28 2 0.03
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.28
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:51261640 original size:54 final size:54
Alignment explanation
Indices: 51261527--51261642 Score: 130
Period size: 54 Copynumber: 2.1 Consensus size: 54
51261517 ACCCTCGATT
* * * *
51261527 TGTAAAATTATCGAAACACCCTCGATTTGTAAAATTATCGCAATACCCTTGTAG
1 TGTAAAATTATCGAAACACCCTCGATGTGTAAAATGACCGCAATACCCCTGTAG
* *
51261581 TGTAAAATTATCGAAATACCCTTG-TAGTGTAAAATGACCG-ACATACCCCTGTAAG
1 TGTAAAATTATCGAAACACCCTCGAT-GTGTAAAATGACCGCA-ATACCCCTGT-AG
51261636 -GTAAAAT
1 TGTAAAAT
51261643 GACTGTTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
53 2 0.04
54 49 0.92
55 2 0.04
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (54 bp):
TGTAAAATTATCGAAACACCCTCGATGTGTAAAATGACCGCAATACCCCTGTAG
Found at i:51282846 original size:43 final size:44
Alignment explanation
Indices: 51282744--51282847 Score: 117
Period size: 42 Copynumber: 2.4 Consensus size: 44
51282734 GTCCTAGATG
*
51282744 TGGTCTTACATGT-AATCAAATATCGAAGCCACTGTCTCAGACA
1 TGGTCTTACATGTAAATCAAATATCGAAGCCAATGTCTCAGACA
* * * **
51282787 AGGTCTTACA-CTAAATCATATA-CGATTCCAATGTC-CAAGACA
1 TGGTCTTACATGTAAATCAAATATCGAAGCCAATGTCTC-AGACA
51282829 TGGTCTTACATGTAAATCA
1 TGGTCTTACATGTAAATCA
51282848 CAAATCAATG
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
41 1 0.02
42 25 0.50
43 24 0.48
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (44 bp):
TGGTCTTACATGTAAATCAAATATCGAAGCCAATGTCTCAGACA
Found at i:51283591 original size:12 final size:12
Alignment explanation
Indices: 51283574--51283604 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
51283564 TAGCTCAACT
51283574 CAAAATCGTCAA
1 CAAAATCGTCAA
51283586 CAAAATCGTCAA
1 CAAAATCGTCAA
51283598 CAAAATC
1 CAAAATC
51283605 AGAAATTGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.52, C:0.26, G:0.06, T:0.16
Consensus pattern (12 bp):
CAAAATCGTCAA
Found at i:51284217 original size:43 final size:43
Alignment explanation
Indices: 51284169--51284383 Score: 204
Period size: 42 Copynumber: 5.0 Consensus size: 43
51284159 TACACGAACA
* *
51284169 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* * * *
51284212 ATGCCACTGTTCCAGATAG-GGTCTTACACGAAATCAAATA-CA
1 ATGCCAATGTCCCAGA-CGTGGTCTTACACGAAATCAAATATCG
* * *
51284254 ATGTCGATGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* * * * *
51284296 ATACCGATGTCCCAAACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AAATCA-AATATCG
* * * * *
51284340 ATGCCAACGTCCCAAACGTGGTCTTACATGAAAGCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
51284383 A
1 A
51284384 ATCCTATGTC
Statistics
Matches: 141, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
42 63 0.45
43 48 0.34
44 30 0.21
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:51284276 original size:85 final size:85
Alignment explanation
Indices: 51284166--51284372 Score: 222
Period size: 85 Copynumber: 2.4 Consensus size: 85
51284156 TGTTACACGA
* * * * * * *
51284166 ACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCC-ACTGTTCCAGATA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATA-CGATACCGA-TGTCCCAAACA
51284230 GGGTCTTACACG-AAATCAAAT
64 GGGTCTTACACGTAAATCAAAT
* * *
51284251 ACAATGTCGATGTCCCAGACATGGTCTTACACGAAATCAAATACGATACCGATGTCCCAAACATG
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACGATACCGATGTCCCAAACAGG
51284316 GTCTTACACGTAAATCATAAGT
66 GTCTTACACGTAAATCA-AA-T
* * * * *
51284338 -CGATGCCAACGTCCCAAACGTGGTCTTACATGAAA
1 ACAATGCCAATGTCCCAGACATGGTCTTACACGAAA
51284373 GCACATATCG
Statistics
Matches: 101, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
84 25 0.25
85 45 0.45
86 30 0.30
87 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (85 bp):
ACAATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATACGATACCGATGTCCCAAACAGG
GTCTTACACGTAAATCAAAT
Found at i:51288891 original size:25 final size:25
Alignment explanation
Indices: 51288857--51288926 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
51288847 AACCAAAACA
*
51288857 AGCCTTTGTGATGAATTATTTGAAG
1 AGCCTTTGTGGTGAATTATTTGAAG
* *
51288882 AGCCTTTGTGGCGAATTATATGAAG
1 AGCCTTTGTGGTGAATTATTTGAAG
*
51288907 AGCCTTTGTGGTGTATTATT
1 AGCCTTTGTGGTGAATTATT
51288927 AGGAAAGTCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (25 bp):
AGCCTTTGTGGTGAATTATTTGAAG
Found at i:51292049 original size:53 final size:53
Alignment explanation
Indices: 51291968--51292074 Score: 196
Period size: 53 Copynumber: 2.0 Consensus size: 53
51291958 AAGAGAAGAA
*
51291968 AAGAGAGGAGAGGTGTAACACCCGTAGCCTGTATCCATCACCAGAATAGGGTT
1 AAGAGAGGAGAGGTGTAACACCCCTAGCCTGTATCCATCACCAGAATAGGGTT
*
51292021 AAGAGAGGAGAGGTGTAACACCCCTAGCCTGTATCCATCACTAGAATAGGGTT
1 AAGAGAGGAGAGGTGTAACACCCCTAGCCTGTATCCATCACCAGAATAGGGTT
51292074 A
1 A
51292075 CGAAGCATTA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.20
Consensus pattern (53 bp):
AAGAGAGGAGAGGTGTAACACCCCTAGCCTGTATCCATCACCAGAATAGGGTT
Found at i:51297801 original size:22 final size:22
Alignment explanation
Indices: 51297727--51297860 Score: 116
Period size: 22 Copynumber: 5.9 Consensus size: 22
51297717 TACCAATATA
51297727 TCAGCTCG-TAAGAGCTTACTGTTT
1 TCAGCTCGAT-AGAGCTTACTG--T
51297751 TCAGCTC-ATTAGAGCTTA-TCGTT
1 TCAGCTCGA-TAGAGCTTACT-G-T
*
51297774 TCAGCTCG-TATGAGCTCACTGT
1 TCAGCTCGATA-GAGCTTACTGT
* *
51297796 TCAGCTCAATAGAGCTTATTGT
1 TCAGCTCGATAGAGCTTACTGT
*
51297818 TCAGCTCGATAGAGCTTACCGTT
1 TCAGCTCGATAGAGCTTACTG-T
51297841 TCAGCTC-ATTAGAGCTTACT
1 TCAGCTCGA-TAGAGCTTACT
51297861 ATTCTTCAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 19
0.77 0.07 0.16
Matches are distributed among these distances:
22 38 0.41
23 37 0.40
24 17 0.18
25 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.35
Consensus pattern (22 bp):
TCAGCTCGATAGAGCTTACTGT
Found at i:51297814 original size:45 final size:45
Alignment explanation
Indices: 51297727--51297858 Score: 178
Period size: 45 Copynumber: 2.9 Consensus size: 45
51297717 TACCAATATA
*
51297727 TCAGCTCGTAAGAGCTTACTGTTTTCAGCTCATTAGAGCTTATCGTT
1 TCAGCTCGTATGAGCTTACTG-TTTCAGCTCATTAGAGCTTATCG-T
* * *
51297774 TCAGCTCGTATGAGCTCACTG-TTCAGCTCAATAGAGCTTATTGT
1 TCAGCTCGTATGAGCTTACTGTTTCAGCTCATTAGAGCTTATCGT
*
51297818 TCAGCTCG-ATAGAGCTTACCGTTTCAGCTCATTAGAGCTTA
1 TCAGCTCGTAT-GAGCTTACTGTTTCAGCTCATTAGAGCTTA
51297859 CTATTCTTCA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
43 2 0.03
44 17 0.22
45 38 0.50
47 19 0.25
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (45 bp):
TCAGCTCGTATGAGCTTACTGTTTCAGCTCATTAGAGCTTATCGT
Found at i:51305448 original size:23 final size:23
Alignment explanation
Indices: 51305406--51305572 Score: 148
Period size: 23 Copynumber: 7.3 Consensus size: 23
51305396 TTAGCTCGTA
* * *
51305406 AGAGCTTACTATTTTCAGCTTATT
1 AGAGCTTACCA-TTTCAGCTCAAT
* *
51305430 GGAGCTTACCATTTCAGCTC-GT
1 AGAGCTTACCATTTCAGCTCAAT
*
51305452 ATGAGCTTACTA-TTCAGCTCAAT
1 A-GAGCTTACCATTTCAGCTCAAT
* *
51305475 AGAGCTTA-C-TGTTCATCTTAAT
1 AGAGCTTACCAT-TTCAGCTCAAT
*
51305497 AGAGCTTA-C-TGTTCATCTCAAT
1 AGAGCTTACCAT-TTCAGCTCAAT
*
51305519 AGAGCTTACCATTTCAGCTCATT
1 AGAGCTTACCATTTCAGCTCAAT
* *
51305542 AGAGCTTACCGTTTCAGCTCATT
1 AGAGCTTACCATTTCAGCTCAAT
51305565 AGAGCTTA
1 AGAGCTTA
51305573 TTGTTCTTCA
Statistics
Matches: 123, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
22 54 0.44
23 59 0.48
24 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (23 bp):
AGAGCTTACCATTTCAGCTCAAT
Found at i:51305470 original size:22 final size:22
Alignment explanation
Indices: 51305394--51305572 Score: 113
Period size: 22 Copynumber: 8.0 Consensus size: 22
51305384 CTTACCGATA
51305394 TATT-AGCTCGTA-AGAGCTTAC
1 TATTCAGCTC-TATAGAGCTTAC
*
51305415 TATTTTCAGCT-TATTGGAGCTTAC
1 TA--TTCAGCTCTA-TAGAGCTTAC
*
51305439 CATTTCAGCTCGTAT-GAGCTTAC
1 TA-TTCAGCTC-TATAGAGCTTAC
*
51305462 TATTCAGCTCAATAGAGCTTAC
1 TATTCAGCTCTATAGAGCTTAC
* *
51305484 TGTTCATCT-TAATAGAGCTTAC
1 TATTCAGCTCT-ATAGAGCTTAC
* * *
51305506 TGTTCATCTCAATAGAGCTTAC
1 TATTCAGCTCTATAGAGCTTAC
*
51305528 CATTTCAGCTC-ATTAGAGCTTACC
1 TA-TTCAGCTCTA-TAGAGCTTA-C
51305552 GT-TTCAGCTC-ATTAGAGCTTA
1 -TATTCAGCTCTA-TAGAGCTTA
51305573 TTGTTCTTCA
Statistics
Matches: 132, Mismatches: 12, Indels: 26
0.78 0.07 0.15
Matches are distributed among these distances:
21 4 0.03
22 57 0.43
23 54 0.41
24 15 0.11
25 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (22 bp):
TATTCAGCTCTATAGAGCTTAC
Found at i:51305517 original size:44 final size:44
Alignment explanation
Indices: 51305454--51305578 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 44
51305444 CAGCTCGTAT
* * *
51305454 GAGCTTACTATTCAGCTCAATAGAGCTTACTGTTCATCTTAATA
1 GAGCTTACTGTTCAGCTCAATAGAGCTTACTGTTCAGCTCAATA
* *
51305498 GAGCTTACTGTTCATCTCAATAGAGCTTACCAT-TTCAGCTCATTA
1 GAGCTTACTGTTCAGCTCAATAGAGCTTA-C-TGTTCAGCTCAATA
* * *
51305543 GAGCTTACCGTTTCAGCTCATTAGAGCTTATTGTTC
1 GAGCTTACTG-TTCAGCTCAATAGAGCTTACTGTTC
51305579 TTCAGCTCAG
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
44 28 0.41
45 22 0.32
46 18 0.26
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (44 bp):
GAGCTTACTGTTCAGCTCAATAGAGCTTACTGTTCAGCTCAATA
Found at i:51307787 original size:79 final size:81
Alignment explanation
Indices: 51307649--51307826 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 81
51307639 TGATGTCCGA
* *
51307649 GCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGC
1 GCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
**
51307713 GAGTTACTA-ATTTCGG
66 GAGTTACTATA-ACCGG
* * **
51307729 GCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTG
1 GCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTG
51307791 CGAGTTACTATAACCGG
65 CGAGTTACTATAACCGG
*
51307808 GCTATGTCCCGAAGGCATT
1 GCTAAGTCCCGAAGGCATT
51307827 TGAACGAGTA
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 59 0.69
80 25 0.29
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (81 bp):
GCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
GAGTTACTATAACCGG
Found at i:51307842 original size:40 final size:40
Alignment explanation
Indices: 51307649--51307828 Score: 208
Period size: 40 Copynumber: 4.5 Consensus size: 40
51307639 TGATGTCCGA
* * *
51307649 GCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGG
* **
51307689 ACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTTCGG
1 GCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGG
*
51307729 GCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGG
*
51307768 GTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
*
51307808 GCTATGTCCCGAAGGCATTTG
1 GCTAAGTCCCGAAGGCATTTG
51307829 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGG
Found at i:51307850 original size:79 final size:77
Alignment explanation
Indices: 51307678--51307861 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 77
51307668 GTGCTAAGTG
* **
51307678 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGG
**
51307743 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* *
51307757 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAA
*
51307821 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
51307836 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
51307862 TACGTGATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 3 0.03
79 57 0.64
80 29 0.33
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:51315840 original size:39 final size:40
Alignment explanation
Indices: 51315740--51315924 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
51315730 TCGAATGATG
* * *
51315740 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
51315779 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
51315820 TCCGAGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
51315859 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
51315898 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
51315925 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:51315946 original size:79 final size:77
Alignment explanation
Indices: 51315774--51315957 Score: 201
Period size: 79 Copynumber: 2.3 Consensus size: 77
51315764 GTGCTAAGTG
* *
51315774 ACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAATTCCGAGCTAAGCCCGAAGG
1 ACTATATCCGG-TTAAG-TCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGG
**
51315839 CATTGGTGCGAGTT
64 CATTGGAACGAGTT
* * *
51315853 ACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAA
1 ACTATATCC-GGTTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAA
*
51315917 GGCATTTGAACGAG-T
62 GGCATTGGAACGAGTT
*
51315932 AGCTATATCCGGTTAAATTCCGAAGG
1 A-CTATATCCGGTT-AAGTCCGAAGG
51315958 TACGTGATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
78 3 0.03
79 57 0.64
80 29 0.33
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (77 bp):
ACTATATCCGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCA
TTGGAACGAGTT
Found at i:51320372 original size:48 final size:48
Alignment explanation
Indices: 51320254--51320449 Score: 243
Period size: 48 Copynumber: 4.0 Consensus size: 48
51320244 TACTCAGGAG
* * * *
51320254 TCTCGCACACTAAGTGCCAATATCATGGCCCGAAGCCAACTCCATATATT
1 TCTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAAT-CA-ATATA
* *
51320304 TCTCGCACCCGAAGTGCTAATAT-AGTGGCCCGAAACCAAATCAATATA
1 TCTCGCACCCGAAGTGCCAATATCA-TGGCCCGAAGCCAAATCAATATA
* *
51320352 TCTCGCACCTGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGA-A
1 TCTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAT-ATA
* * *
51320400 GCTCGCACCCGAAGTGCCAATATCATGGTCCGAAGCCAAATCAATGTA
1 TCTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATATA
51320448 TC
1 TC
51320450 CCCTAATGAT
Statistics
Matches: 128, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
48 89 0.70
49 5 0.04
50 34 0.27
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.21
Consensus pattern (48 bp):
TCTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATATA
Found at i:51324862 original size:207 final size:207
Alignment explanation
Indices: 51324499--51324915 Score: 710
Period size: 207 Copynumber: 2.0 Consensus size: 207
51324489 AACAGGGCAT
* *
51324499 ACATACTGACTTGCACCACACGGCCGGAGACGCGCTCGTGTGCCATGGCCATGGGAAATCTGGAG
1 ACATACTGACTTGCACCACACAGCCGAAGACGCGCTCGTGTGCCATGGCCATGGGAAATCTGGAG
* * *
51324564 GGCTTAATGACTTTGGTCACACGACCGGTCACATGTCCATGTGCCAGCCCGTGCCTCACACACGG
66 GGCTTAATGACTTGGGTCACACGACCGGCCACATGCCCATGTGCCAGCCCGTGCCTCACACACGG
* *
51324629 CCAATAGACACGACTATGTCTGGGCCTTGCCAAACCTGTAAGGTATACTAACTTAAATTCGAAGG
131 CCAATAGACACGACTATGTCTGGGCCTTGCCAAACCTGTAAGCTATACTAACTTAAATTCGAAAG
51324694 GTACTCCAGGGG
196 GTACTCCAGGGG
51324706 ACATACTGACTTGCACCACACAGCCGAAGACGCGCTCGTGTGCCATGGCCATGGGAAATCTGGAG
1 ACATACTGACTTGCACCACACAGCCGAAGACGCGCTCGTGTGCCATGGCCATGGGAAATCTGGAG
* *
51324771 GGCTTACTGACTTGGGTCACAC-AGCCGGCCACATGCCCATGTGTCAGCCCGTGCCTCACACACG
66 GGCTTAATGACTTGGGTCACACGA-CCGGCCACATGCCCATGTGCCAGCCCGTGCCTCACACACG
* * *
51324835 GCCAATAGACACGACTGTGTTTGGGCCTTGCCAAACCTGTAAGCTATACTAACTTAAATTTGAAA
130 GCCAATAGACACGACTATGTCTGGGCCTTGCCAAACCTGTAAGCTATACTAACTTAAATTCGAAA
51324900 GGTACTCCAGGGG
195 GGTACTCCAGGGG
51324913 ACA
1 ACA
51324916 CACAGCCATG
Statistics
Matches: 197, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
206 1 0.01
207 196 0.99
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (207 bp):
ACATACTGACTTGCACCACACAGCCGAAGACGCGCTCGTGTGCCATGGCCATGGGAAATCTGGAG
GGCTTAATGACTTGGGTCACACGACCGGCCACATGCCCATGTGCCAGCCCGTGCCTCACACACGG
CCAATAGACACGACTATGTCTGGGCCTTGCCAAACCTGTAAGCTATACTAACTTAAATTCGAAAG
GTACTCCAGGGG
Found at i:51325992 original size:43 final size:43
Alignment explanation
Indices: 51325925--51326095 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 43
51325915 AAAGCTTGTA
* * * *
51325925 CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
* * * * ** *
51325967 CGATGCCACTGTCCCAGATAGGGTCTTACACAAAATCAAATAAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT-AT
*
51326011 -AATGCCAATGTCCCAGACATGCTCTTACACGTAATCACA-AT
1 CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
*
51326052 ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT
1 -CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
51326096 AGGTAACCTA
Statistics
Matches: 105, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 93 0.89
44 4 0.04
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT
Found at i:51326090 original size:86 final size:85
Alignment explanation
Indices: 51325926--51326082 Score: 208
Period size: 86 Copynumber: 1.8 Consensus size: 85
51325916 AAGCTTGTAC
* * * * * * *
51325926 AATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGATAGGGT
1 AATGCCATATCCCAGACATGCTCTTACACGTAATCACATATCAATGCCAATGTCCCAGACAGGGT
51325991 CTTACACAAAATCAAATAAT
66 CTTACACAAAATCAAATAAT
* *
51326011 AATGCCAATGTCCCAGACATGCTCTTACACGTAATCACA-ATACAATGCCAATGTCCCAGACATG
1 AATGCC-ATATCCCAGACATGCTCTTACACGTAATCACATAT-CAATGCCAATGTCCCAGACAGG
51326075 GTCTTACA
64 GTCTTACA
51326083 TGTAATCACA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 8 0.13
86 53 0.87
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (85 bp):
AATGCCATATCCCAGACATGCTCTTACACGTAATCACATATCAATGCCAATGTCCCAGACAGGGT
CTTACACAAAATCAAATAAT
Found at i:51328701 original size:17 final size:17
Alignment explanation
Indices: 51328679--51328712 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
51328669 TCAAGAATGT
51328679 TTTAAGATCTCATAGAG
1 TTTAAGATCTCATAGAG
51328696 TTTAAGATCTCATAGAG
1 TTTAAGATCTCATAGAG
51328713 CCTTATAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (17 bp):
TTTAAGATCTCATAGAG
Found at i:51331429 original size:40 final size:40
Alignment explanation
Indices: 51331352--51331569 Score: 359
Period size: 40 Copynumber: 5.5 Consensus size: 40
51331342 AAACCAAGTA
* *
51331352 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
51331391 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
51331431 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
51331471 CCTTCGTGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51331511 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
51331551 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
51331570 TTATCATCCG
Statistics
Matches: 167, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.92
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:51335302 original size:31 final size:31
Alignment explanation
Indices: 51335259--51335321 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
51335249 TAATGCAATG
51335259 TTATGTTAGAATTATAACTCTTTACTATTAT
1 TTATGTTAGAATTATAACTCTTTACTATTAT
*
51335290 TTATGTTTGAATTATAACTCTTTACTATTAT
1 TTATGTTAGAATTATAACTCTTTACTATTAT
51335321 T
1 T
51335322 GCATAAATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.06, T:0.54
Consensus pattern (31 bp):
TTATGTTAGAATTATAACTCTTTACTATTAT
Found at i:51338845 original size:46 final size:46
Alignment explanation
Indices: 51338795--51338970 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
51338785 TGGTTGAGCA
* *
51338795 TCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
51338841 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
51338888 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
51338934 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51338971 GCGGGTTATG
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:51338951 original size:93 final size:93
Alignment explanation
Indices: 51338792--51338962 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
51338782 GGATGGTTGA
* * *
51338792 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
51338857 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
51338885 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
51338950 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
51338963 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:51340582 original size:28 final size:28
Alignment explanation
Indices: 51340519--51340728 Score: 305
Period size: 28 Copynumber: 7.5 Consensus size: 28
51340509 ATATTAAGTC
*
51340519 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
51340546 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51340574 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
51340602 TGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
51340630 TGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
51340658 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
51340686 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
51340715 CGCACACTTAGTGC
1 CGCACACTTAGTGC
51340729 CAATCTCATG
Statistics
Matches: 172, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 22 0.13
28 131 0.76
29 19 0.11
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:51345591 original size:15 final size:15
Alignment explanation
Indices: 51345571--51345639 Score: 86
Period size: 15 Copynumber: 4.6 Consensus size: 15
51345561 GTATCTTGGG
51345571 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
51345586 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
*
51345601 TTTCTTTATTCC-GGG
1 TTTCTTTA-TCCTGGA
*
51345616 TTTCTCTATCCTGGA
1 TTTCTTTATCCTGGA
51345631 TTTCTTTAT
1 TTTCTTTAT
51345640 TCGGTTTCCT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
14 3 0.07
15 39 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.20, G:0.13, T:0.55
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:51345607 original size:30 final size:29
Alignment explanation
Indices: 51345562--51345639 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 29
51345552 CATAGTATCG
* * *
51345562 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCCTGGATTTCTTTATCC-GGATCTCTC
* * *
51345592 TATTCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCCTGGATTTCTTTA-TCCGGATCTCTC
51345622 TATCCTGGATTTCTTTAT
1 TATCCTGGATTTCTTTAT
51345640 TCGGTTTCCT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 1 0.03
30 36 0.90
31 3 0.08
ACGTcount: A:0.12, C:0.19, G:0.15, T:0.54
Consensus pattern (29 bp):
TATCCTGGATTTCTTTATCCGGATCTCTC
Found at i:51348095 original size:46 final size:46
Alignment explanation
Indices: 51348045--51348220 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 46
51348035 TGGTTGAGCA
* * *
51348045 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
*** * ** ** *
51348091 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG
* *
51348138 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* * * *
51348184 CCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
51348221 GCAGGTTACA
Statistics
Matches: 104, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
46 70 0.67
47 34 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:51348201 original size:93 final size:93
Alignment explanation
Indices: 51348042--51348212 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
51348032 GGATGGTTGA
* * *
51348042 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
51348107 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * ** *
51348135 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
*
51348200 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
51348213 ACTTATGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:51353554 original size:43 final size:44
Alignment explanation
Indices: 51353506--51353613 Score: 123
Period size: 43 Copynumber: 2.5 Consensus size: 44
51353496 TATTAACGAG
51353506 ATGTGATTATGTGTAAGACCATGTATGGGACATTGGCATCATT-
1 ATGTGATTATGTGTAAGACCATGTATGGGACATTGGCATCATTA
** * * * *
51353549 ATGTGATTACATATAAGACCATGTCTTGGACATTGGCATCGTTA
1 ATGTGATTATGTGTAAGACCATGTATGGGACATTGGCATCATTA
*
51353593 AT-TAATT-TCGTGTAAGACCAT
1 ATGTGATTAT-GTGTAAGACCAT
51353614 AGCTAGGCTA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
43 51 0.96
44 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (44 bp):
ATGTGATTATGTGTAAGACCATGTATGGGACATTGGCATCATTA
Found at i:51359233 original size:31 final size:31
Alignment explanation
Indices: 51359195--51359255 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
51359185 TAATTGGAAA
*
51359195 ATCAGAATCTATGATTACTTAGCACATTATT
1 ATCAGAATCTATGACTACTTAGCACATTATT
51359226 ATCAGAATCTATGACTACTTAGCACATTAT
1 ATCAGAATCTATGACTACTTAGCACATTAT
51359256 CAATTATGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (31 bp):
ATCAGAATCTATGACTACTTAGCACATTATT
Found at i:51373177 original size:25 final size:25
Alignment explanation
Indices: 51373149--51373196 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
51373139 GTATGCTAAT
*
51373149 GCGAG-CGATGAATCGGTATGCTCTC
1 GCGAGTCG-TGAATCGGTAAGCTCTC
*
51373174 GCGAGTTGTGAATCGGTAAGCTC
1 GCGAGTCGTGAATCGGTAAGCTC
51373197 ATACGAGCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.21, C:0.21, G:0.33, T:0.25
Consensus pattern (25 bp):
GCGAGTCGTGAATCGGTAAGCTCTC
Found at i:51373203 original size:25 final size:25
Alignment explanation
Indices: 51373157--51373233 Score: 75
Period size: 25 Copynumber: 3.1 Consensus size: 25
51373147 ATGCGAGCGA
* *
51373157 TGAATCGGTATGCTC-TCGCGAGTTG
1 TGAATCGGTAAGCTCAT-ACGAGTTG
*
51373182 TGAATCGGTAAGCTCATACGAGCTG
1 TGAATCGGTAAGCTCATACGAGTTG
* * * *
51373207 AGAATTGGCAAGCTCATAAGAGTTG
1 TGAATCGGTAAGCTCATACGAGTTG
51373232 TG
1 TG
51373234 GTGTGTCCAC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
25 41 0.98
26 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (25 bp):
TGAATCGGTAAGCTCATACGAGTTG
Found at i:51385711 original size:40 final size:39
Alignment explanation
Indices: 51385646--51385731 Score: 118
Period size: 40 Copynumber: 2.2 Consensus size: 39
51385636 TATATATATA
* *
51385646 TAGCCAAAGCTATCTCAAACTGCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCA-TTT
* * *
51385686 TAGCCGAAGCTATTTCGAACCGCACACTAAGTGCCATTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
51385725 TAGCCGA
1 TAGCCGA
51385732 TAAGTCGTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 10 0.24
40 31 0.76
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.23
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
Found at i:51390451 original size:42 final size:42
Alignment explanation
Indices: 51390392--51390475 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
51390382 GTGCTTATAA
51390392 GTATAACTTGAGATAAAATGGTGCTTAGTCATCATAAGTAAC
1 GTATAACTTGAGATAAAATGGTGCTTAGTCATCATAAGTAAC
51390434 GTATAACTTGAGATAAAATGGTGCTTAGTCATCATAAGTAAC
1 GTATAACTTGAGATAAAATGGTGCTTAGTCATCATAAGTAAC
51390476 CATATTTGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (42 bp):
GTATAACTTGAGATAAAATGGTGCTTAGTCATCATAAGTAAC
Found at i:51391131 original size:40 final size:40
Alignment explanation
Indices: 51391052--51391212 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 40
51391042 CGGATGATAA
* * * ** * *
51391052 CCGGACTAAGATCTGAAGGCATTCATGTGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
51391092 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
51391132 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
51391172 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
51391212 C
1 C
51391213 TGGCTAAATC
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 2 0.02
40 100 0.96
41 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:51391496 original size:22 final size:22
Alignment explanation
Indices: 51391456--51391497 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
51391446 GAATGTGCAT
*
51391456 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
51391478 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
51391498 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:51393031 original size:43 final size:44
Alignment explanation
Indices: 51392983--51393090 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 44
51392973 TCCTAGATGT
* * *
51392983 GGTCTTACATGTTATCACATAT-CGATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCACATATACAATGCCAATGTCCCACACAG
* * * * *
51393026 GGTCTTACACGAAATCACA-ATACAATGCCAATGTCCTAGACAT
1 GGTCTTACATGTAATCACATATACAATGCCAATGTCCCACACAG
*
51393069 GGCCTTACATGTAATCACATAT
1 GGTCTTACATGTAATCACATAT
51393091 TGATTTGATG
Statistics
Matches: 52, Mismatches: 11, Indels: 3
0.79 0.17 0.05
Matches are distributed among these distances:
42 2 0.04
43 48 0.92
44 2 0.04
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (44 bp):
GGTCTTACATGTAATCACATATACAATGCCAATGTCCCACACAG
Found at i:51396047 original size:40 final size:39
Alignment explanation
Indices: 51395975--51396060 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
51395965 TATATATATA
* * *
51395975 TAGCCAAAGCTATCTCAAATTGCACCCCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAATCGCACACCAAGTGCCA-TTT
* * *
51396015 TAGCCGAAGCTATTTCGAATCGCACACTAAGTGCCATTT
1 TAGCCGAAGCTATCTCAAATCGCACACCAAGTGCCATTT
51396054 TAGCCGA
1 TAGCCGA
51396061 TAAATCGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAATCGCACACCAAGTGCCATTT
Found at i:51398865 original size:24 final size:25
Alignment explanation
Indices: 51398808--51398865 Score: 59
Period size: 24 Copynumber: 2.3 Consensus size: 25
51398798 ACATTTTTAA
51398808 TTTAATTTGGACTACTTATTTTTTT
1 TTTAATTTGGACTACTTATTTTTTT
*
51398833 TTAAGATTTGGA-TA-TT-TTTATTTT
1 TTTA-ATTTGGACTACTTATTT-TTTT
51398857 CTTTAATTT
1 -TTTAATTT
51398866 TTTTATTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
23 3 0.11
24 10 0.36
25 8 0.29
26 7 0.25
ACGTcount: A:0.22, C:0.05, G:0.09, T:0.64
Consensus pattern (25 bp):
TTTAATTTGGACTACTTATTTTTTT
Found at i:51403634 original size:26 final size:26
Alignment explanation
Indices: 51403589--51403652 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 26
51403579 CTTACGTTAG
* *
51403589 TTAATGTGTTCTAATCAGTTCAGCTAT
1 TTAATATG-TCTAATCAGTTCAGCCAT
*
51403616 TTAATATGTCTAATTAGTTCAGCCAT
1 TTAATATGTCTAATCAGTTCAGCCAT
51403642 TTAATATGTCT
1 TTAATATGTCT
51403653 TAAGTTTATT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 27 0.79
27 7 0.21
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.45
Consensus pattern (26 bp):
TTAATATGTCTAATCAGTTCAGCCAT
Found at i:51403686 original size:73 final size:72
Alignment explanation
Indices: 51403542--51403698 Score: 181
Period size: 73 Copynumber: 2.2 Consensus size: 72
51403532 CTTAAGTCTG
** * *
51403542 TTTAATATGTTCTAATTAGATTCGGTAATTAATATGTCTTACGTTAGTTAATGTGTTCTAATCAG
1 TTTAATATG-TCTAATTAGATTCGCCAATTAATATGTCTTAAGTTAGTTAATGTGTTCTAATCAA
*
51403607 TTCAGCTA
65 TACAGCTA
* * * *
51403615 TTTAATATGTCTAATTAG-TTCAGCCATTTAATATGTCTTAAGTTTATTTAATGTGTTCTAGTTA
1 TTTAATATGTCTAATTAGATTC-GCCAATTAATATGTCTTAAG-TTAGTTAATGTGTTCTAATCA
51403679 ATACAGCTA
64 ATACAGCTA
* *
51403688 CTTAATGTGTC
1 TTTAATATGTC
51403699 ATAAGCTTAG
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
71 3 0.04
72 25 0.35
73 43 0.61
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (72 bp):
TTTAATATGTCTAATTAGATTCGCCAATTAATATGTCTTAAGTTAGTTAATGTGTTCTAATCAAT
ACAGCTA
Found at i:51406961 original size:6 final size:6
Alignment explanation
Indices: 51406952--51407001 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
51406942 TAGAAAAATC
* * *
51406952 AAAAGA AAAAGA ACAAGA GAAAA-A TAATGA AAAAGA AAAAG- AAAAGA
1 AAAAGA AAAAGA AAAAGA -AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
51406999 AAA
1 AAA
51407002 GCAAGTAGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
5 7 0.20
6 25 0.71
7 3 0.09
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (6 bp):
AAAAGA
Found at i:51420272 original size:46 final size:45
Alignment explanation
Indices: 51420190--51420324 Score: 180
Period size: 47 Copynumber: 2.9 Consensus size: 45
51420180 TTTTAGTTTA
* * *
51420190 AGTATTTAATGTGTCTTGAGTCTATTTAATATGTTCTAATTAGATTC
1 AGTATTTAATATGTCTTAAGT-TATTTAATGTGTTCTAATTAG-TTC
* *
51420237 AGTAATTAATATGTCTTAAGTTAATTAATGTGTTCTAATTAGTTC
1 AGTATTTAATATGTCTTAAGTTATTTAATGTGTTCTAATTAGTTC
*
51420282 AGCCATTTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTA
1 AG-TATTTAATATGTCTTAAG-TTATTTAATGTGTTCTAATTA
51420325 ATACAACTAC
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
45 5 0.06
46 35 0.45
47 38 0.49
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.48
Consensus pattern (45 bp):
AGTATTTAATATGTCTTAAGTTATTTAATGTGTTCTAATTAGTTC
Found at i:51420324 original size:47 final size:47
Alignment explanation
Indices: 51420193--51420324 Score: 178
Period size: 46 Copynumber: 2.8 Consensus size: 47
51420183 TAGTTTAAGT
* * * * *
51420193 ATTTAATGTGTCTTGAGTCTATTTAATATGTTCTAATTAGATTCAGT
1 ATTTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTAGATTCAGC
* *
51420240 AATTAATATGTCTTAAG-TTAATTAATGTGTTCTAATTAG-TTCAGCC
1 ATTTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTAGATTCAG-C
51420286 ATTTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTA
1 ATTTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTA
51420325 ATACAACTAC
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 5 0.07
46 35 0.47
47 34 0.46
ACGTcount: A:0.30, C:0.08, G:0.13, T:0.48
Consensus pattern (47 bp):
ATTTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTAGATTCAGC
Found at i:51420339 original size:47 final size:47
Alignment explanation
Indices: 51420195--51420339 Score: 159
Period size: 47 Copynumber: 3.1 Consensus size: 47
51420185 GTTTAAGTAT
* * * * *
51420195 TTAATGTGTCTTGAGTCTATTTAATATGTTCTAATTAGATTC-AGTAA
1 TTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTA-ATTCAACTAA
* * * * *
51420242 TTAATATGTCTTAAG-TTAATTAATGTGTTCTAATTAGTTCAGCCAT
1 TTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTAATTCAACTAA
* *
51420288 TTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTAATACAACTAC
1 TTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTAATTCAACTAA
51420335 TTAAT
1 TTAAT
51420340 GTTTCATAAG
Statistics
Matches: 80, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
45 3 0.04
46 34 0.43
47 43 0.54
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.47
Consensus pattern (47 bp):
TTAATATGTCTTAAGTTTATTTAATGTGTTCTAATTAATTCAACTAA
Done.