Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 169 of 345
Found at i:57849562 original size:46 final size:46
Alignment explanation
Indices: 57849495--57849666 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
57849485 TAGAACCCGC
* *
57849495 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGTTCAGGCATTCGCAT
* * *
57849541 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GG-ATGC-CTAGTT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGTTCAGGCATTCGC-A--T
* * *
57849587 ACATTTCA-CGAACTCGAACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCA--TAAGCGAACTCGAACTCAACTCAACGAGTTCAGGCATTCGCAT
* *
57849634 TCATAAGTGAACTCGAACTCAACTCAACGAGTT
1 CCATAAGCGAACTCGAACTCAACTCAACGAGTT
57849667 TGGATGCTCA
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 4 0.04
46 60 0.57
47 28 0.27
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGAACTCAACTCAACGAGTTCAGGCATTCGCAT
Found at i:57849661 original size:93 final size:93
Alignment explanation
Indices: 57849502--57849673 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
57849492 CGCCCATAAG
* * *
57849502 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
57849567 ACGAGTTCGGATGCCTAGTTACATTTCA
66 ACGAGTTCGGATGCCTAGTTACATTTCA
* *
57849595 CGAACTCGAACTCAACTCAACGAGTTCAGACATTCGCATTCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
57849660 ACGAGTTTGGATGC
66 ACGAGTTCGGATGC
57849674 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.23
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTTCA
Found at i:57852109 original size:30 final size:30
Alignment explanation
Indices: 57852065--57852153 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
57852055 CAAAGATAAC
57852065 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
57852094 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
57852124 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
57852154 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:57852113 original size:15 final size:15
Alignment explanation
Indices: 57852065--57852144 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
57852055 CAAAGATAAC
*
57852065 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
57852079 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
57852094 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
57852109 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
57852124 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
57852139 AAGAAA
1 AAGAAA
57852145 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:57852153 original size:15 final size:15
Alignment explanation
Indices: 57852076--57852153 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
57852066 AGAAAACCGA
57852076 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
57852091 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
57852105 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
57852120 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
57852136 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
57852151 ATA
1 ATA
57852154 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:57854989 original size:23 final size:22
Alignment explanation
Indices: 57854962--57855011 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
57854952 TGCCTAAAAT
57854962 GACACACGAGGTGCCTG-ATAC
1 GACACACGAGGTGCCTGAATAC
57854983 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCTG-AATAC
57855006 GACACA
1 GACACA
57855012 TAAAGTGCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 17 0.63
23 10 0.37
ACGTcount: A:0.34, C:0.28, G:0.26, T:0.12
Consensus pattern (22 bp):
GACACACGAGGTGCCTGAATAC
Found at i:57855019 original size:23 final size:23
Alignment explanation
Indices: 57854937--57855023 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
57854927 CCAGATCAGT
*
57854937 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* * *
57854959 A-ATGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
57854979 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
57855002 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
57855024 TCGATAAAGC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.02
21 32 0.60
22 1 0.02
23 19 0.36
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:57855419 original size:15 final size:15
Alignment explanation
Indices: 57855394--57855451 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
57855384 TCATGTATAT
57855394 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
57855410 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
57855425 AATAATTTCAATCAA
1 TATAAATTCAATCAA
57855440 TATAAATTCAAT
1 TATAAATTCAAT
57855452 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:57857683 original size:40 final size:40
Alignment explanation
Indices: 57857629--57857963 Score: 467
Period size: 40 Copynumber: 8.4 Consensus size: 40
57857619 ATTGAGAGTT
* * *
57857629 ATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
* * * *
57857669 TTATAGCCGGGCTAAGTCGCGAAAAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
* *
57857709 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GATG
1 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAG-TG
*
57857749 TTATATCCGGGCTAAGTC-CTGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCTC-GAAGAGCATTCGTGCTAGTG
* *
57857789 ATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
* * *
57857829 ATGTATCCGGGCTAAGTTTCGAAGAGCATTCATGCTAGTG
1 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
* *
57857869 ATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
* *
57857909 ATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
57857949 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
57857964 ACCTCAAAGG
Statistics
Matches: 278, Mismatches: 13, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
39 2 0.01
40 274 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG
Found at i:57858032 original size:28 final size:26
Alignment explanation
Indices: 57857990--57858151 Score: 108
Period size: 28 Copynumber: 5.7 Consensus size: 26
57857980 TGCTGGAGTT
* *
57857990 ATGAGGCACTGTGTGTGCAAGTTCTTCA
1 ATGA-GCACTATGTGTGCGAGTTCTT-A
* * *
57858018 ACTGAGCACTATGTGTGCCAGATCAGTA
1 A-TGAGCACTATGTGTGCGAGTTC-TTA
*
57858046 GTTGAGGCACTATGTGTGCGAGTTCTTCA
1 -ATGA-GCACTATGTGTGCGAGTTCTT-A
** **
57858075 ATCGATTACTATGTGTGCGAGATTGGTA
1 AT-GAGCACTATGTGTGCGAG-TTCTTA
57858103 ATTGAGGCACTATGTGTGCGAGTTCTTTA
1 A-TGA-GCACTATGTGTGCGAGTTC-TTA
*
57858132 ATCGAGCGCTATGTGTGCGA
1 AT-GAGCACTATGTGTGCGA
57858152 AATCAGTCAG
Statistics
Matches: 105, Mismatches: 18, Indels: 22
0.72 0.12 0.15
Matches are distributed among these distances:
28 58 0.55
29 47 0.45
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (26 bp):
ATGAGCACTATGTGTGCGAGTTCTTA
Found at i:57858086 original size:57 final size:57
Alignment explanation
Indices: 57857991--57858179 Score: 222
Period size: 57 Copynumber: 3.3 Consensus size: 57
57857981 GCTGGAGTTA
* * *
57857991 TGAGGCACTGTGTGTGCAAGTTCTTCAA-CTGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATC-GAGCACTATGTGTGCGAGATCAGTAGT
** ** *
57858048 TGAGGCACTATGTGTGCGAGTTCTTCAATCGATTACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * *
57858105 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
57858162 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
57858180 AGTGTGTTTC
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
56 14 0.12
57 96 0.86
58 2 0.02
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:57858124 original size:29 final size:29
Alignment explanation
Indices: 57858023--57858124 Score: 100
Period size: 29 Copynumber: 3.6 Consensus size: 29
57858013 CTTCAACTGA
* * *
57858023 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
** *
57858052 GCACTATGTGTGCGAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
** *
57858080 TTACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
57858109 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
57858125 TTCTTTAATC
Statistics
Matches: 57, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 21 0.37
29 36 0.63
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.31
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:57862821 original size:149 final size:144
Alignment explanation
Indices: 57862560--57862893 Score: 569
Period size: 149 Copynumber: 2.3 Consensus size: 144
57862550 TATATATGTG
57862560 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
*
57862625 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGT
66 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGT
57862690 ATGAGATAAGATATGTATA
131 AT--G---AGATATGTATA
57862709 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
* *
57862774 GCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAAAGCTGAATGGCTACTGTGAAATATGT
66 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGT
57862839 ATGAGATATGTATA
131 ATGAGATATGTATA
* * *
57862853 TATGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
57862894 GTGTGTATAT
Statistics
Matches: 179, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
144 49 0.27
147 1 0.01
149 129 0.72
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (144 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTACTGTGAAATATGT
ATGAGATATGTATA
Found at i:57862903 original size:48 final size:48
Alignment explanation
Indices: 57862560--57862893 Score: 560
Period size: 48 Copynumber: 6.9 Consensus size: 48
57862550 TATATATGTG
57862560 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
57862608 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
57862656 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATAAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT--G---AGATATGTATA
57862709 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
57862757 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
57862805 TGTGGTAAAGCTGAATGGCTACTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
57862853 TATGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
57862894 GTGTGTATAT
Statistics
Matches: 272, Mismatches: 9, Indels: 10
0.93 0.03 0.03
Matches are distributed among these distances:
48 224 0.82
50 1 0.00
51 1 0.00
53 46 0.17
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:57864427 original size:40 final size:40
Alignment explanation
Indices: 57864373--57864827 Score: 635
Period size: 40 Copynumber: 11.4 Consensus size: 40
57864363 ATTGAGAGTT
* *
57864373 ATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * * *
57864413 TTATAGCCAGGCTAAGTCCCGAAGAGCATTGGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
57864453 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GATG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG-TG
* *
57864493 TTATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCT-GATG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG-TG
* *
57864533 TTATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
57864573 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
57864613 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
57864653 ATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * *
57864693 ATGTATCCGGGCTAAGTTCCGAAGAGCATTCATACTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
57864733 ATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTA
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* **
57864773 ATGTATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
57864813 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
57864828 ACCTCAAAGG
Statistics
Matches: 392, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
39 1 0.00
40 390 0.99
41 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:57864946 original size:57 final size:57
Alignment explanation
Indices: 57864855--57865011 Score: 199
Period size: 57 Copynumber: 2.8 Consensus size: 57
57864845 GCTGGAGTTA
* * *
57864855 TGAGGCACTGTGTGTGCAAGTTCTTCAA-CTGAGCACTATGTGTGCCAGATCAGTAGC
1 TGAGGCACTATGTGTGCGAGTTCTTCAATC-GAGCACTATGTGTGCCAGATCAGTAAC
** * ** *
57864912 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGTGATATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAAC
* *
57864969 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGT
57865012 ACGAAATCAG
Statistics
Matches: 88, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
57 87 0.99
58 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCCAGATCAGTAAC
Found at i:57864997 original size:29 final size:28
Alignment explanation
Indices: 57864859--57865011 Score: 112
Period size: 28 Copynumber: 5.4 Consensus size: 28
57864849 GAGTTATGAG
* * * *
57864859 GCACTGTGTGTGCAAGTTCTTCAACTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
* * ** **
57864887 GCACTATGTGTGCCAGATCAGTAGCTGA
1 GCACTATGTGTGCGAGTTCTTTAATTGA
* *
57864915 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
* *
57864944 GCACTATGTGTGTGA-TAT-TGGTAATTGA
1 GCACTATGTGTGCGAGT-TCT-TTAATTGA
*
57864972 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATTGA
*
57865001 GCGCTATGTGT
1 GCACTATGTGT
57865012 ACGAAATCAG
Statistics
Matches: 96, Mismatches: 23, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
27 2 0.02
28 51 0.53
29 41 0.43
30 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATTGA
Found at i:57868315 original size:48 final size:48
Alignment explanation
Indices: 57868253--57868389 Score: 256
Period size: 48 Copynumber: 2.9 Consensus size: 48
57868243 TATATATGTG
*
57868253 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
57868301 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
*
57868349 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
57868390 GTGTGTATAT
Statistics
Matches: 87, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
Found at i:57869966 original size:93 final size:93
Alignment explanation
Indices: 57869858--57870029 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
57869848 CGCCCATAAG
* * *
57869858 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
57869923 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
57869951 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
57870016 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
57870030 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:57870026 original size:46 final size:46
Alignment explanation
Indices: 57869851--57870026 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
57869841 TGTAACCCGC
* * *
57869851 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
57869897 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
57869947 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
57869990 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
57870027 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:57870829 original size:74 final size:74
Alignment explanation
Indices: 57870698--57870861 Score: 283
Period size: 74 Copynumber: 2.2 Consensus size: 74
57870688 TTAAAACTTT
* *
57870698 ATATTCTATCATAAAACATCAAAATACACAAATTTCACCTATGGGTATTTTTTCAAATATAAACC
1 ATATTCTATCATAAAACATCAAAATACACAAATTTCACCTATGGGTAATTTTCCAAATATAAACC
57870763 CTAGGTTAA
66 CTAGGTTAA
57870772 ATATTCTATCATAAAACATCAAAATACACAAATTTCACCTATGGGTAATTTTCCAAATATAAACC
1 ATATTCTATCATAAAACATCAAAATACACAAATTTCACCTATGGGTAATTTTCCAAATATAAACC
57870837 CTAGGTTAA
66 CTAGGTTAA
*
57870846 ATTATTGCTAACATAA
1 A-TATT-CTATCATAA
57870862 GCTTTATCGA
Statistics
Matches: 85, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
74 73 0.86
75 4 0.05
76 8 0.09
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.33
Consensus pattern (74 bp):
ATATTCTATCATAAAACATCAAAATACACAAATTTCACCTATGGGTAATTTTCCAAATATAAACC
CTAGGTTAA
Found at i:57871441 original size:37 final size:37
Alignment explanation
Indices: 57871391--57871480 Score: 153
Period size: 37 Copynumber: 2.4 Consensus size: 37
57871381 GGATATTACA
57871391 CGATGACTACGTGTGGAGATTATGTCCGGGTAAGACC
1 CGATGACTACGTGTGGAGATTATGTCCGGGTAAGACC
*
57871428 CGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACC
1 CGATGACTACGTGTGGAGATTATGTCCGGGTAAGACC
* *
57871465 AGATAACTACGTGTGG
1 CGATGACTACGTGTGG
57871481 GGACTATTCG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 50 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
CGATGACTACGTGTGGAGATTATGTCCGGGTAAGACC
Found at i:57878416 original size:43 final size:44
Alignment explanation
Indices: 57878314--57878417 Score: 133
Period size: 42 Copynumber: 2.4 Consensus size: 44
57878304 GTCCTAGACG
* * * *
57878314 TGGTCTTACATGT-AATCAAATATCGATGCCACTGTCCCAGACA
1 TGGTCTTACACGTAAATCAAATATCGATGACAATGTCCCAAACA
* *
57878357 GGGTCTTACAC-AAAATCAAATA-CGATGACAATGTCCCAAACA
1 TGGTCTTACACGTAAATCAAATATCGATGACAATGTCCCAAACA
57878399 TGGTCTTACACGTAAATCA
1 TGGTCTTACACGTAAATCA
57878418 TAAGTCAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
42 27 0.53
43 24 0.47
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (44 bp):
TGGTCTTACACGTAAATCAAATATCGATGACAATGTCCCAAACA
Found at i:57886680 original size:55 final size:53
Alignment explanation
Indices: 57886552--57886681 Score: 134
Period size: 53 Copynumber: 2.4 Consensus size: 53
57886542 AACTTACCAT
** * *
57886552 TGCCATGTCTTGACATGGTCTTATGTGGTATCCTTACCTTATGAACTCAACAT
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAACTCAACAA
* * * * ** * *
57886605 TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTAT-G-AACTCAACAA
57886660 TGCCATGTCTTGACATGGTCTT
1 TGCCATGTCTTGACATGGTCTT
57886682 TCCTTGCCTT
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
53 35 0.57
54 1 0.02
55 25 0.41
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCCTTACCTTATGAACTCAACAA
Found at i:57888291 original size:44 final size:43
Alignment explanation
Indices: 57888171--57888317 Score: 163
Period size: 43 Copynumber: 3.4 Consensus size: 43
57888161 TCCCAGATGT
* * * * *
57888171 GGTCTTACATGTAATCACATATCGATGCCACTGTCCCAAACATA
1 GGTCTTACACGAAATCACATATCGATGTCAATGTCCCAGACA-A
* * *
57888215 -GTCTTACACGAACTCATATA-CGATGTCGATGTCCCAGACAA
1 GGTCTTACACGAAATCACATATCGATGTCAATGTCCCAGACAA
* **
57888256 GGTCTCACACGCAAATCACATATCGATGTCAATGTCCCAGACGT
1 GGTCTTACACG-AAATCACATATCGATGTCAATGTCCCAGACAA
57888300 GGTCTTACACGAAATCAC
1 GGTCTTACACGAAATCAC
57888318 TTATTGAAAT
Statistics
Matches: 85, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 25 0.29
43 31 0.36
44 28 0.33
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
GGTCTTACACGAAATCACATATCGATGTCAATGTCCCAGACAA
Found at i:57888335 original size:44 final size:44
Alignment explanation
Indices: 57888243--57888328 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
57888233 TACGATGTCG
**
57888243 ATGTCCCAGACAAGGTCTCACACGCAAATCACATATCGATGTCA
1 ATGTCCCAGACAAGGTCTCACACGCAAATCACATATCGAAATCA
** * * *
57888287 ATGTCCCAGACGTGGTCTTACACG-AAATCACTTATTGAAATC
1 ATGTCCCAGACAAGGTCTCACACGCAAATCACATATCGAAATC
57888329 CTATGTCATG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
43 14 0.40
44 21 0.60
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (44 bp):
ATGTCCCAGACAAGGTCTCACACGCAAATCACATATCGAAATCA
Found at i:57895453 original size:43 final size:45
Alignment explanation
Indices: 57895345--57895455 Score: 131
Period size: 45 Copynumber: 2.5 Consensus size: 45
57895335 ACATAACATT
* *
57895345 TCATTTCACCGGCATTATAGCCTGCCAAGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCA-TATAGCCTACCAAGCTCAAAGGCCCGAATAA
* *
57895391 T-ATTTCACCGGTATCATAGCCTACTAAGCTCAAA-GCCCG-AT-A
1 TCATTTCACCGGCAT-ATAGCCTACCAAGCTCAAAGGCCCGAATAA
57895433 TCATTTCACCGGCACTATAGCCT
1 TCATTTCACCGGCA-TATAGCCT
57895456 GCTAGGCCCG
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.04
43 20 0.35
44 6 0.11
45 28 0.49
46 1 0.02
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (45 bp):
TCATTTCACCGGCATATAGCCTACCAAGCTCAAAGGCCCGAATAA
Found at i:57895477 original size:43 final size:43
Alignment explanation
Indices: 57895345--57895478 Score: 139
Period size: 43 Copynumber: 3.1 Consensus size: 43
57895335 ACATAACATT
* *
57895345 TCATTTCACCGGCATTATAGCCTGCCAAGCTCAAAGGCTCGAATAA
1 TCATTTCACCGGCA-TATAGCCTGCTAAGCTCAAA-GCCCGAAT-A
* *
57895391 T-ATTTCACCGGTATCATAGCCTACTAAGCTCAAAGCCCG-ATA
1 TCATTTCACCGGCAT-ATAGCCTGCTAAGCTCAAAGCCCGAATA
* * *
57895433 TCATTTCACCGGCACTATAGCCTGCTAGGCCCGAA-CCCGAATA
1 TCATTTCACCGGCA-TATAGCCTGCTAAGCTCAAAGCCCGAATA
57895476 TCA
1 TCA
57895479 CATTTCGATA
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
42 6 0.08
43 34 0.45
44 6 0.08
45 28 0.37
46 1 0.01
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (43 bp):
TCATTTCACCGGCATATAGCCTGCTAAGCTCAAAGCCCGAATA
Found at i:57901369 original size:31 final size:30
Alignment explanation
Indices: 57901307--57901369 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
57901297 TTCGGGGATT
*
57901307 AAAATTAAATTATATATTTTTATGATATTA
1 AAAATTAAATTATATATTATTATGATATTA
*
57901337 AAAATGTAATATTAT-TATTATTATTATATTA
1 AAAAT-TAA-ATTATATATTATTATGATATTA
57901368 AA
1 AA
57901370 GAAATGAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 5 0.17
31 19 0.66
32 5 0.17
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (30 bp):
AAAATTAAATTATATATTATTATGATATTA
Found at i:57916879 original size:55 final size:55
Alignment explanation
Indices: 57916756--57916886 Score: 167
Period size: 55 Copynumber: 2.4 Consensus size: 55
57916746 CCCTTAGACC
* * * * *
57916756 GTGTGCAACACTAACTTTAAAACACGTCCATGACACATGCCCATGTGGCCTGCCT
1 GTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCATGTGGCCTACCT
***
57916811 GTGTACAACACTGACTTTAAAACACGGCCATGACACACGCTTGTGTGGCCTACCT
1 GTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCATGTGGCCTACCT
57916866 GTGTACTAA-ACTGAC-TTAAAA
1 GTGTAC-AACACTGACTTTAAAA
57916887 TTATAAGTGC
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
54 6 0.09
55 59 0.88
56 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (55 bp):
GTGTACAACACTGACTTTAAAACACGGCCATGACACACGCCCATGTGGCCTACCT
Found at i:57922147 original size:42 final size:42
Alignment explanation
Indices: 57922045--57922165 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 42
57922035 AACAAGTACA
* * *
57922045 ATGCCGACGTCCCAGACATGGTCTTACAT-ATAATTCAATATCG
1 ATGCCGATGTCCAAGACATGGTCTTACATGA-AA-TCAATATAG
** * *
57922088 ATGCCTTTGTCCTAGACAGGGTCTTACATGAAATCAGATA-AG
1 ATGCCGATGTCCAAGACATGGTCTTACATGAAATCA-ATATAG
*
57922130 ATGCCGATGTCCAAGACATGGTCTTATATGTAAATC
1 ATGCCGATGTCCAAGACATGGTCTTACATG-AAATC
57922166 TCAATCGAGG
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.45
43 34 0.53
44 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (42 bp):
ATGCCGATGTCCAAGACATGGTCTTACATGAAATCAATATAG
Found at i:57922196 original size:85 final size:85
Alignment explanation
Indices: 57922045--57922200 Score: 199
Period size: 85 Copynumber: 1.8 Consensus size: 85
57922035 AACAAGTACA
* * * * * *
57922045 ATGCCGACGTCCCAGACATGGTCTTACATATAATTCAATATCGATGCCTTTGTCCTAGACAGGGT
1 ATGCCGACGTCCAAGACATGGTCTTACATATAATTCAATATCGAGGCCTGTGTCCCAAACACGGT
57922110 CTTACATGAAATCAGATAAG
66 CTTACATGAAATCAGATAAG
* * *
57922130 ATGCCGATGTCCAAGACATGGTCTTATATGTAAATCTC-A-ATCGAGGCCTGTGTCCCAAACACG
1 ATGCCGACGTCCAAGACATGGTCTTACATAT-AAT-TCAATATCGAGGCCTGTGTCCCAAACACG
57922193 GTCTTACA
64 GTCTTACA
57922201 CGATGTCTCA
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 54 0.90
86 4 0.07
87 2 0.03
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (85 bp):
ATGCCGACGTCCAAGACATGGTCTTACATATAATTCAATATCGAGGCCTGTGTCCCAAACACGGT
CTTACATGAAATCAGATAAG
Found at i:57930889 original size:39 final size:39
Alignment explanation
Indices: 57930845--57930972 Score: 184
Period size: 39 Copynumber: 3.3 Consensus size: 39
57930835 TATGAGATTG
57930845 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
57930884 AAAATATCCGGAAATGAGGTCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * * * **
57930923 AATATATTCGGACTTGAGGTCCGCAGGTTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
57930962 AAAATATCCGG
1 AAAATATCCGG
57930973 GTTAAAGACC
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:57930986 original size:78 final size:75
Alignment explanation
Indices: 57930844--57930998 Score: 179
Period size: 78 Copynumber: 2.0 Consensus size: 75
57930834 GTATGAGATT
* *
57930844 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGAAATGAGGTCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGAAATGA-GCCCGCA
*
57930909 GGCTATATGCTA
65 GGCT-TACGCTA
* * * *
57930921 GAAATATATTCGGACTTGAGGTCCGCAGGTTACGTGCTGGAAAAATATCCGGGTTAAA-GA-CCC
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCC-GG--AAATGAGCCC
57930984 GCAGGCTTACGCTA
62 GCAGGCTTACGCTA
57930998 G
1 G
57930999 TGATGTATTC
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
77 11 0.16
78 49 0.73
79 2 0.03
80 2 0.03
81 3 0.04
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (75 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGAAATGAGCCCGCAG
GCTTACGCTA
Found at i:57938929 original size:39 final size:39
Alignment explanation
Indices: 57938871--57939037 Score: 244
Period size: 39 Copynumber: 4.3 Consensus size: 39
57938861 TATGAGATTG
* *
57938871 AAAATATCCGGACACGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCACAGGCTATATGCTGGA
* *
57938910 AAAATATCCAGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCACAGGCTATATGCTGGA
*
57938949 AAAATATCCGGACATGAGGTCCACAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCACAGGCTATATGCTGGA
* * **
57938988 AATATATCCGGACTTGAGGTCCACAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCACAGGCTATATGCTGGA
*
57939027 AAATTATCCGG
1 AAAATATCCGG
57939038 GTTAAAGACC
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 116 1.00
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCACAGGCTATATGCTGGA
Found at i:57939054 original size:78 final size:78
Alignment explanation
Indices: 57938871--57939063 Score: 192
Period size: 78 Copynumber: 2.5 Consensus size: 78
57938861 TATGAGATTG
** ** * *
57938871 AAAATATCCGGACACGAGGTCCGCAGGCTATATGCTGGAAAAATATCCAGACATGAGGTCCGCAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGGTCCACAG
*
57938936 GCTATATGCTGGA
66 GCTACATGCTGGA
* ** * * * *
57938949 AAAATATCCGGACATGAGGTCCACAGGCTATATGCTAGAAATATATCCGGACTTGAGGTCCACAG
1 AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGGTCCACAG
*
57939014 GCTACGTGCTGGA
66 GCTACATGCTGGA
* ** *
57939027 AAATTATCCGG-GTTAAAGACCCGCAGGCT-TACGCTAG
1 AAAATATCCGGACAT-AAGACCCGCAGGCTATATGCTAG
57939064 TGATGTAATC
Statistics
Matches: 97, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
77 8 0.08
78 89 0.92
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (78 bp):
AAAATATCCGGACATAAGACCCGCAGGCTATATGCTAGAAAAATATCCAGACATGAGGTCCACAG
GCTACATGCTGGA
Found at i:57947458 original size:47 final size:47
Alignment explanation
Indices: 57947134--57947879 Score: 997
Period size: 47 Copynumber: 15.4 Consensus size: 47
57947124 CAGCCAAGAG
* *
57947134 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGAGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
57947181 AGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTA--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
57947230 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
57947281 AGTATATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
57947332 AGTGTATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
57947383 AGTATATGTATATATGTAATAAGGCCTAATAGCCGACGTGATGAATGTGAA
1 AG----TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
57947434 AGTGTATATGTGTGATAAGGCCTAATAGCGGACGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
57947481 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
57947528 AGTGTATGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 A--G--TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
57947579 AGTGTATATGTGTGATAAGGCCTAATAGCCGACGTGATGAATGTCAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
57947626 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
57947673 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
57947720 AGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
57947767 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * *
57947814 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
57947861 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
57947880 TCTCGAAAGG
Statistics
Matches: 643, Mismatches: 40, Indels: 32
0.90 0.06 0.04
Matches are distributed among these distances:
47 369 0.57
49 44 0.07
51 225 0.35
53 5 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:57948054 original size:37 final size:37
Alignment explanation
Indices: 57947998--57948076 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
57947988 CCGAGCTCTA
* * *
57947998 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
57948035 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
57948072 AAGAC
1 AAGAC
57948077 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:57949576 original size:46 final size:46
Alignment explanation
Indices: 57949424--57949580 Score: 160
Period size: 46 Copynumber: 3.4 Consensus size: 46
57949414 GGGTGTTACA
* *** *
57949424 CAACTCAACGAGCTCGGGTGTTCGCATCCAAAAGTGAACTCGGACT
1 CAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACT
* * *
57949470 CAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-CGAACTCGGACT
1 CAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGTGAACTCGGACT
*
57949517 CAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACT
1 CAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACT
57949563 CAACTCAACGAGTTCGGA
1 CAACTCAACGAGTTCGGA
57949581 TGCTCAACCA
Statistics
Matches: 89, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 44 0.49
47 28 0.31
48 1 0.01
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACT
Found at i:57949599 original size:46 final size:44
Alignment explanation
Indices: 57949456--57949599 Score: 132
Period size: 46 Copynumber: 3.1 Consensus size: 44
57949446 CGCATCCAAA
57949456 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
57949503 CA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCT
57949549 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
57949595 AGTGA
1 AGTGA
57949600 CATGTCACTT
Statistics
Matches: 78, Mismatches: 11, Indels: 16
0.74 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.41
47 30 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:57957711 original size:45 final size:46
Alignment explanation
Indices: 57957645--57957813 Score: 145
Period size: 45 Copynumber: 3.7 Consensus size: 46
57957635 TGATATGTGT
* *
57957645 GCTAGTGTAAGACATG--TGGGACATGCATCAGCCACATTATGAAA
1 GCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAAA
* * * * * *
57957689 GCCAATGTAA-ACATGTCTGGGACATGCA-CCGGCATTAAGATGAGA
1 GCTAATGTAAGACATGTCTGGGACATGCATCAGCCA-CAATATGAAA
* * *
57957734 G-TACTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGTAT-ACAA
1 GCTAATGTAAGACATGTCTGGGACATGCATCAGCCAC-AATATGA-AA
*
57957780 GCTAGTGTAAGAC-TGTCTGGGACATGGCATCAGC
1 GCTAATGTAAGACATGTCTGGGACAT-GCATCAGC
57957814 TTGTTGGTGC
Statistics
Matches: 98, Mismatches: 18, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
43 5 0.05
44 18 0.18
45 37 0.38
46 20 0.20
47 18 0.18
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (46 bp):
GCTAATGTAAGACATGTCTGGGACATGCATCAGCCACAATATGAAA
Found at i:57964349 original size:79 final size:79
Alignment explanation
Indices: 57964205--57964425 Score: 229
Period size: 79 Copynumber: 2.8 Consensus size: 79
57964195 GAATCACATA
* * *
57964205 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGT
1 CCTTCGGAACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
57964270 AACTCGCACAAATG
66 AACTCGCACAAATG
* * * *
57964284 CCTTCGGGACTTAACCCGGATTTAG-TAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 CCTTCGGAACTTAA-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-T
57964346 AGTAACTCGCACAAATG
63 AGTAACTCGCACAAATG
* * * * *
57964363 CCTTCGGATCTTAGTCCGG--ATAG-TCACTTAGCACAAAAAGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGAACTTA-ACCGGATATAGCT-AC-TCGCAC-AAATGCCTTCGGGACATAGCCCGGATA
57964425 T
62 T
57964426 CATTCGAATA
Statistics
Matches: 119, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
77 6 0.05
78 6 0.05
79 66 0.55
80 40 0.34
81 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGAACTTAACCGGATATAGCTACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGT
AACTCGCACAAATG
Found at i:57964422 original size:40 final size:38
Alignment explanation
Indices: 57964231--57964424 Score: 221
Period size: 40 Copynumber: 4.9 Consensus size: 38
57964221 GGATATAGCT
* *
57964231 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG--ATAGTA
*
57964271 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA--TAGTA
*
57964311 ACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-A-TAGTA
* *
57964350 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATAGTA
* *
57964388 ACTTAGCACAAAAAGCCTTCGGGACTTAGCCCGGATA
1 AC-TCGCAC-AAATGCCTTCGGGACTTAGCCCGGATA
57964425 TCATTCGAAT
Statistics
Matches: 135, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
38 9 0.07
39 38 0.28
40 85 0.63
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAGTA
Found at i:57972547 original size:39 final size:40
Alignment explanation
Indices: 57972426--57972619 Score: 232
Period size: 40 Copynumber: 4.8 Consensus size: 40
57972416 GAATATAGCT
* *
57972426 ACTCGCTCAAATGCCTTCGGGACATAGCCC-GATTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
57972466 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
57972506 ACTCGCACCAATGCCTTTGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * **
57972545 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGCC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
57972585 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGAT
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGAT
57972620 ATCATTCGAA
Statistics
Matches: 132, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.24
40 66 0.50
41 29 0.22
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:57972577 original size:79 final size:80
Alignment explanation
Indices: 57972426--57972621 Score: 218
Period size: 79 Copynumber: 2.5 Consensus size: 80
57972416 GAATATAGCT
* *
57972426 ACTCGCTCAAATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTT
57972491 AACCCGGATTTAGTA
66 AACCCGGATTTAGTA
* * *
57972506 ACTCGCACCAATGCCTTTGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATC
1 ACTCGCACAAATGCCTTCGGGACATAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-C
** * **
57972568 TTAGTCCGGATATAGCC
64 TTAACCCGGATTTAGTA
* * * *
57972585 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 AC-TCGCACAAATGCCTTCGGGACATAGCCCGAATAT
57972622 CATTCGAATA
Statistics
Matches: 96, Mismatches: 15, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 45 0.47
80 39 0.41
81 9 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTT
AACCCGGATTTAGTA
Found at i:57985145 original size:55 final size:54
Alignment explanation
Indices: 57985077--57985209 Score: 140
Period size: 55 Copynumber: 2.4 Consensus size: 54
57985067 ACACCTGTGA
* * * ** *
57985077 TAATTTAATAGGTTCACCCACGGTTGCTTGGCACAGGCGTGTCGCACGCCCGTGT
1 TAATTTGACAGGTTCGCCCACGGTT-CAAGGCACAGGCGTGTCGCACGCCCGTGC
* ** *
57985132 TAATTTGACAGGTTCGGCCACGGGTTCAAGGCATGGGGGTGTCGCACGCCCGTGC
1 TAATTTGACAGGTTCGCCCAC-GGTTCAAGGCACAGGCGTGTCGCACGCCCGTGC
* *
57985187 TATTTTGGCAGGTTCGCCCACGG
1 TAATTTGACAGGTTCGCCCACGG
57985210 CCAGGTCGTA
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
54 2 0.03
55 58 0.91
56 4 0.06
ACGTcount: A:0.17, C:0.26, G:0.32, T:0.26
Consensus pattern (54 bp):
TAATTTGACAGGTTCGCCCACGGTTCAAGGCACAGGCGTGTCGCACGCCCGTGC
Found at i:57991991 original size:30 final size:30
Alignment explanation
Indices: 57991957--57992013 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
57991947 ATGAATCGGA
57991957 AGCTTTGGCACTAAGTGTACGATTTAAACT
1 AGCTTTGGCACTAAGTGTACGATTTAAACT
*
57991987 AGCTTTGGCACTAAGTGTGCGATTTAA
1 AGCTTTGGCACTAAGTGTACGATTTAA
57992014 TTAGCTTCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (30 bp):
AGCTTTGGCACTAAGTGTACGATTTAAACT
Found at i:57999244 original size:12 final size:13
Alignment explanation
Indices: 57999210--57999249 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
57999200 TTTTTTTAAG
57999210 TAGTTTATTGATA
1 TAGTTTATTGATA
57999223 TAGTCATTATT-ATA
1 TAGT--TTATTGATA
57999237 TAGTTTATTGATA
1 TAGTTTATTGATA
57999250 AAAATAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 5 0.21
13 7 0.29
14 7 0.29
15 5 0.21
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.53
Consensus pattern (13 bp):
TAGTTTATTGATA
Found at i:58002273 original size:43 final size:43
Alignment explanation
Indices: 58002212--58002316 Score: 156
Period size: 43 Copynumber: 2.4 Consensus size: 43
58002202 TAGCCCAACT
* * *
58002212 ATGGTCTCACACGAAATCAAATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCAAATAACGATGCCAATGTCCCAAAC
* *
58002255 ATGGTCTTACACGTAATCACATAATGATGCCAATGTCCCAAAC
1 ATGGTCTTACACGTAATCAAATAACGATGCCAATGTCCCAAAC
*
58002298 ATGGTCTTACACATAATCA
1 ATGGTCTTACACGTAATCA
58002317 CATCTCGTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCAAATAACGATGCCAATGTCCCAAAC
Found at i:58007605 original size:30 final size:30
Alignment explanation
Indices: 58007569--58007628 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
58007559 CAAGAAAATC
*
58007569 GAATAAAGAAATCCA-AGATAGAGAAACCCA
1 GAATAAAGAAATCCAGA-ATAAAGAAACCCA
58007599 GAATAAAGAAATCCAGAATAAAGAAACCCA
1 GAATAAAGAAATCCAGAATAAAGAAACCCA
58007629 AGATACGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (30 bp):
GAATAAAGAAATCCAGAATAAAGAAACCCA
Found at i:58007608 original size:15 final size:15
Alignment explanation
Indices: 58007569--58007628 Score: 77
Period size: 15 Copynumber: 4.0 Consensus size: 15
58007559 CAAGAAAATC
*
58007569 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
*
58007584 -AGATAGAGAAACCCA
1 GA-ATAAAGAAACCCA
*
58007599 GAATAAAGAAATCCA
1 GAATAAAGAAACCCA
58007614 GAATAAAGAAACCCA
1 GAATAAAGAAACCCA
58007629 AGATACGATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
14 1 0.03
15 36 0.95
16 1 0.03
ACGTcount: A:0.58, C:0.17, G:0.15, T:0.10
Consensus pattern (15 bp):
GAATAAAGAAACCCA
Found at i:58016844 original size:46 final size:46
Alignment explanation
Indices: 58016791--58017056 Score: 224
Period size: 46 Copynumber: 5.7 Consensus size: 46
58016781 TGGTTGAGCA
*
58016791 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
* * * *
58016837 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAA-T--G
* * * *
58016882 CATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATT
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
* * * *
58016930 TCCGAACTCGTTGAGTTGCGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAA-T--G
* *
58016975 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
* * *
58017023 CCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58017057 GGGGCGGGTT
Statistics
Matches: 173, Mismatches: 29, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.05
45 5 0.03
46 86 0.50
47 53 0.31
48 5 0.03
50 8 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
Found at i:58016903 original size:47 final size:47
Alignment explanation
Indices: 58016837--58017005 Score: 186
Period size: 47 Copynumber: 3.6 Consensus size: 47
58016827 CATGCGAATG
*
58016837 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
* * * * * *
58016884 TCTGAACTCGTTGAGTTGAGTCTGAGTTCACT--TATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCA
*
58016928 TTTCCGAACTCGTTGAGTTGCGTCCGAGTTCGTGAAATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
*
58016977 TCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
58017006 ACTTATGGAT
Statistics
Matches: 97, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 29 0.30
47 56 0.58
48 2 0.02
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA
Found at i:58016947 original size:93 final size:93
Alignment explanation
Indices: 58016788--58017051 Score: 431
Period size: 93 Copynumber: 2.8 Consensus size: 93
58016778 GGATGGTTGA
*
58016788 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGCATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
58016853 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
* * *
58016881 GCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATTTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
* *
58016946 TGCGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTTCGAGTTCGTGAAATGTAACTAG
* * *
58016974 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
58017039 TGA-TTCCGAGTTC
66 TGAGTT-CGAGTTC
58017052 ACTTAGGGGC
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
92 1 0.01
93 155 0.99
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTTCGAGTTCGTGAAATGTAACTAG
Found at i:58020315 original size:40 final size:40
Alignment explanation
Indices: 58020103--58020308 Score: 335
Period size: 40 Copynumber: 5.2 Consensus size: 40
58020093 AACCCAAGTA
* *
58020103 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
58020142 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
58020182 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
58020222 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
58020262 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
58020302 CATTCGG
1 CCTTCGG
58020309 ATCTTAGTCC
Statistics
Matches: 156, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.08
40 143 0.92
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:58021703 original size:13 final size:13
Alignment explanation
Indices: 58021685--58021710 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58021675 ATTTTTATTT
58021685 TTAACATAAAATA
1 TTAACATAAAATA
58021698 TTAACATAAAATA
1 TTAACATAAAATA
58021711 ATTATAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
TTAACATAAAATA
Found at i:58027818 original size:40 final size:40
Alignment explanation
Indices: 58027772--58027996 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
58027762 CTTGTGCAAG
* * *
58027772 GCCTTCGGGTCTTAGCCCGGATGTTGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
58027812 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
58027852 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
** * *
58027892 GCCTTCGGGTCTTAGCCCGGATATAGAAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
58027932 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
58027973 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
58027997 CATTCGAATA
Statistics
Matches: 157, Mismatches: 27, Indels: 1
0.85 0.15 0.01
Matches are distributed among these distances:
40 129 0.82
41 28 0.18
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:58038011 original size:46 final size:46
Alignment explanation
Indices: 58037961--58038133 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
58037951 TGGTTGAGCA
58037961 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
58038007 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--AATG-TAATTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
58038052 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
58038100 -CCCAAGCTCGTTGAGTTGATTCTGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
58038134 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 7 0.07
46 54 0.52
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:58043387 original size:30 final size:29
Alignment explanation
Indices: 58043352--58043410 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
58043342 ATTTAATACG
*
58043352 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTT-CCCCTA
* *
58043382 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTCCCCTA
58043411 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (29 bp):
AACTTTGGCAAAATTACACTTTTCCCCTA
Found at i:58044583 original size:50 final size:50
Alignment explanation
Indices: 58044417--58044594 Score: 171
Period size: 50 Copynumber: 3.6 Consensus size: 50
58044407 GTAGGCAAGC
* ** * *
58044417 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACTTGCG-GCCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCCAAT
** * * * *
58044466 TATCCAGTACACGTAGTAACCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCCAAT
* * * * *
58044516 AATCTGATACACTTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCCAA-T
* *
58044567 TATCGGGTACGC-TAGTAGCCTGCACTTA
1 TATCTGGTACACATAGTAGCCTGCACTTA
58044595 TTCGTCATAT
Statistics
Matches: 103, Mismatches: 24, Indels: 3
0.79 0.18 0.02
Matches are distributed among these distances:
49 35 0.34
50 60 0.58
51 8 0.08
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCCAAT
Found at i:58051720 original size:30 final size:30
Alignment explanation
Indices: 58051686--58051744 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
58051676 TCCTTAACTC
*
58051686 AAACTTTTGCAAAATTACAATTTTGCCCTT
1 AAACTTTTGCAAAATTACAATTTTCCCCTT
* * *
58051716 AAACTTTTGCATATTTACACTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTCCCCT
58051745 AGGCTCGGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.42
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTCCCCTT
Found at i:58054177 original size:15 final size:16
Alignment explanation
Indices: 58054141--58054177 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
58054131 ACATATCATT
58054141 TATTTCATTATATCAA
1 TATTTCATTATATCAA
58054157 TATTTCA-TATA-CAA
1 TATTTCATTATATCAA
58054171 TAGTTTC
1 TA-TTTC
58054178 CATGTATTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 5 0.25
15 8 0.40
16 7 0.35
ACGTcount: A:0.35, C:0.14, G:0.03, T:0.49
Consensus pattern (16 bp):
TATTTCATTATATCAA
Found at i:58055351 original size:63 final size:63
Alignment explanation
Indices: 58055183--58055428 Score: 183
Period size: 68 Copynumber: 3.7 Consensus size: 63
58055173 TCTCTTGTAC
* * * *
58055183 ACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCA-ATTTATCTCGTAGCTCTCTTATCT
1 ACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATATATCTCGTAGCTCTCTTATCT
* * * * * *
58055246 ACATGGTATCCTTCACCTGGAACCACGCATGCGACCTAGCTACATATATCTCGTAGCTC-CTTGT
1 ACATGG--T-GTACA-CTAGTACCACCCATGCGACCTAGCTACATATATCTCGTAGCTCTCTTAT
58055310 CT
62 CT
* * *
58055312 ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTG
1 ACATGGTGTACAC-TAGTACCACCCATGCGACCTAGCTACAT-AT-A--TCTCGTAGCTCTCTTA
58055377 TAC-
61 T-CT
* * * ** *
58055380 ACATGATGTGCACTCAGCACCATACATGTGACCTAGCTACATACTATCT
1 ACATGGTGTACACT-AGTACCACCCATGCGACCTAGCTACATA-TATCT
58055429 GTATCATCCA
Statistics
Matches: 145, Mismatches: 24, Indels: 26
0.74 0.12 0.13
Matches are distributed among these distances:
62 1 0.01
63 33 0.23
64 3 0.02
65 5 0.03
66 33 0.23
67 30 0.21
68 39 0.27
69 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (63 bp):
ACATGGTGTACACTAGTACCACCCATGCGACCTAGCTACATATATCTCGTAGCTCTCTTATCT
Found at i:58063137 original size:55 final size:56
Alignment explanation
Indices: 58063077--58063213 Score: 197
Period size: 55 Copynumber: 2.5 Consensus size: 56
58063067 CTCGTGCCCT
*
58063077 TAGCCTGTGTGCAACACTGACTTTAAAACACAGCCATGACACACGCCCGTGTGGCC
1 TAGCCTGTGTACAACACTGACTTTAAAACACAGCCATGACACACGCCCGTGTGGCC
* * *
58063133 -AGCCTGTGTACAACACTGAATTTAAAACACGGCCATGACACATGCCCGTGTGGCC
1 TAGCCTGTGTACAACACTGACTTTAAAACACAGCCATGACACACGCCCGTGTGGCC
* * *
58063188 TA-CCCGCGTACAACACTAACTTTAAA
1 TAGCCTGTGTACAACACTGACTTTAAA
58063214 TTTTAAGTGC
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
55 71 0.99
56 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (56 bp):
TAGCCTGTGTACAACACTGACTTTAAAACACAGCCATGACACACGCCCGTGTGGCC
Found at i:58064051 original size:49 final size:48
Alignment explanation
Indices: 58063977--58064252 Score: 212
Period size: 49 Copynumber: 5.8 Consensus size: 48
58063967 ATATGTTGTC
* * *
58063977 GATGCCATGTCTCGGACATGTTCTTACACTAGCTATCATCATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC-TCGAGGCT
* * ** *
58064026 GATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATCTATATGTACT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCGA-G-GCT
* * * *
58064076 GATG-CATGTCCCAAACAT-GTCTTACACTAGC-A-CAACTCTTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTC-GAGGCT
* * * *
58064120 GATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATCATCGTTGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATC-TCGAGGCT
* * * * *
58064167 GAT-ACATGTCCCAGACAT-GTCTTACACTGGC-ACTCATTCTCTATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCA-TCTCGAGGCT
* *
58064214 AATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCAT
58064253 ATTGTGGCCG
Statistics
Matches: 183, Mismatches: 29, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
44 28 0.15
45 1 0.01
46 9 0.05
47 42 0.23
48 31 0.17
49 65 0.36
50 7 0.04
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATCTCGAGGCT
Found at i:58064280 original size:95 final size:92
Alignment explanation
Indices: 58064027--58064295 Score: 292
Period size: 95 Copynumber: 2.9 Consensus size: 92
58064017 ATCGAGGCTG
* * * *
58064027 ATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATCTATATGT-ACTGATGCATGTCCCAAA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA--TAT-TGTGGCTGATGCATGTCCCAAA
* *
58064091 CATGTCTTACACTAGCACAACTCTTAGCCG
63 CATGTCTTACACTGGCACAACTCTTAGCCA
* * * * * *
58064121 ATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATCATCGTTGAGGCTGATACATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-ATTGTGGCTGATGCATGTCCCAAACA
* *
58064184 TGTCTTACACTGGCACTCATTCTCTATGCCA
65 TGTCTTACACTGGCAC-AACTCT-TA-GCCA
* *
58064215 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGTGGCCGATGCATGTGCCAAACAT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGTGGCTGATGCATGTCCCAAACAT
* *
58064280 GTCATGCACTGGCACA
66 GTCTTACACTGGCACA
58064296 CAAGTAATCC
Statistics
Matches: 143, Mismatches: 25, Indels: 14
0.79 0.14 0.08
Matches are distributed among these distances:
90 3 0.02
91 33 0.23
92 19 0.13
93 14 0.10
94 9 0.06
95 46 0.32
96 19 0.13
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (92 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGTGGCTGATGCATGTCCCAAACAT
GTCTTACACTGGCACAACTCTTAGCCA
Found at i:58066541 original size:28 final size:28
Alignment explanation
Indices: 58066473--58066570 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
58066463 CATGAGATTG
* * * *
58066473 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
58066502 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
58066530 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
58066557 ACACTGAGTGTGCG
1 GCACTAAGTGTGCG
58066571 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:58066581 original size:27 final size:27
Alignment explanation
Indices: 58066503--58066583 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
58066493 AATTGTACAG
* * *
58066503 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGA-CTTGAATATATAA
* *
58066531 CACTAAGTGTGCGAGTTGATTATATAA
1 CACTAAGTGTGCGACTTGAATATATAA
*
58066558 CACTGAGTGTGCGGACTT-AATATATA
1 CACTAAGTGTGC-GACTTGAATATATA
58066584 TTTTTGAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 29 0.62
28 18 0.38
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.33
Consensus pattern (27 bp):
CACTAAGTGTGCGACTTGAATATATAA
Found at i:58068541 original size:94 final size:93
Alignment explanation
Indices: 58068281--58068544 Score: 261
Period size: 94 Copynumber: 2.8 Consensus size: 93
58068271 GTTGCTGCTG
* * * * *
58068281 GCATGTCCCTGACATGGTCTTACACTGGCTATCATCATCGAGGCTGATGACATTTCCCAGACATG
1 GCATGTCCCAGACATGGTCTTACACTGGCTATCAT-ATTGAGGCCGATG-CGTGTCCCAGACAT-
* * *
58068346 GTCTTATACTAGGTCTCGTCTATAGGTGCTAAT
63 GTCTTACACT-GG-CTCATCTATAGGGGCTAAT
* * * * *
58068379 GCATGTCCCAGACAT-GTCTTACACTAGC-ACCACT-CT-AAGCCGATGCGTGTCCCAGACACGT
1 GCATGTCCCAGACATGGTCTTACACTGGCTATCA-TATTGAGGCCGATGCGTGTCCCAGACATGT
* *
58068440 CTCACACTGGCT-AT-TATCGTCGAGGCTAAT
65 CTTACACTGGCTCATCTATAG--G-GGCTAAT
*
58068470 GCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGTGGCCGATGCGTGTCCCAGACATGTC
1 GCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGAGGCCGATGCGTGTCCCAGACATGTC
58068535 TTACACTGGC
66 TTACACTGGC
58068545 ACACAATTAA
Statistics
Matches: 136, Mismatches: 22, Indels: 20
0.76 0.12 0.11
Matches are distributed among these distances:
88 4 0.03
89 1 0.01
90 3 0.02
91 23 0.17
92 21 0.15
93 15 0.11
94 39 0.29
96 3 0.02
97 13 0.10
98 14 0.10
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (93 bp):
GCATGTCCCAGACATGGTCTTACACTGGCTATCATATTGAGGCCGATGCGTGTCCCAGACATGTC
TTACACTGGCTCATCTATAGGGGCTAAT
Found at i:58068926 original size:30 final size:30
Alignment explanation
Indices: 58068885--58068941 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
58068875 AAATTCACAT
* * *
58068885 CTTTGGTAAAATCACCATTTTGCCCCTAGA
1 CTTTGGCAAAATAACCATTTTACCCCTAGA
58068915 CTTTGGCAAAATAACCATTTTACCCCT
1 CTTTGGCAAAATAACCATTTTACCCCT
58068942 TTGCTCGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATAACCATTTTACCCCTAGA
Found at i:58071289 original size:19 final size:19
Alignment explanation
Indices: 58071267--58071303 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
58071257 GATTAAAAAC
*
58071267 TATAAAACAAAGTAAAGTA
1 TATAAAACAAAATAAAGTA
*
58071286 TATAAAATAAAATAAAGT
1 TATAAAACAAAATAAAGT
58071304 TCTAATGCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.08, T:0.24
Consensus pattern (19 bp):
TATAAAACAAAATAAAGTA
Found at i:58074716 original size:42 final size:40
Alignment explanation
Indices: 58074611--58074759 Score: 129
Period size: 43 Copynumber: 3.5 Consensus size: 40
58074601 CTGAGACATT
* *
58074611 GTGTAAGACCGTGTCTGGGACACATGCATCG-ATTGAGATTTAC
1 GTGTAAGACCATGTCTGGGACAC-GGCATCGTATT--GATTT-C
*
58074654 GTATAAGACCATGTCTGGGACATCGGCATCGTATCTGATTTC
1 GTGTAAGACCATGTCTGGGACA-CGGCATCGTAT-TGATTTC
* * *
58074696 GTGTAAGACCTTGTCTGGGACAGAGGCATCGATATTGAATTAC
1 GTGTAAGACCATGTCTGGGACA-CGGCATCG-TATTG-ATTTC
* * *
58074739 ATGTAAGACCACGTCCGGGAC
1 GTGTAAGACCATGTCTGGGAC
58074760 GTCGGTATTG
Statistics
Matches: 89, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
42 30 0.34
43 55 0.62
44 3 0.03
45 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
GTGTAAGACCATGTCTGGGACACGGCATCGTATTGATTTC
Found at i:58077090 original size:37 final size:37
Alignment explanation
Indices: 58077040--58077118 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
58077030 TTATTACGAA
* * *
58077040 GTCTTACCCGGACATAATCTCCACACGA-AGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAC-ATAGTCATCGG
58077077 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
58077114 GTCTT
1 GTCTT
58077119 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
Found at i:58077363 original size:47 final size:47
Alignment explanation
Indices: 58077237--58077592 Score: 532
Period size: 49 Copynumber: 7.4 Consensus size: 47
58077227 CCCTTCAGGA
* * * * * *
58077237 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58077284 CCTGTCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
58077333 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58077380 CTTATCACATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58077427 CTCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58077476 CTCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58077525 CTCATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58077574 CTTATCACATATATACACT
1 CTTATCACATATATACACT
58077593 GTCTTGGCTG
Statistics
Matches: 291, Mismatches: 14, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 108 0.37
49 183 0.63
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58077441 original size:96 final size:96
Alignment explanation
Indices: 58077240--58077592 Score: 552
Period size: 96 Copynumber: 3.7 Consensus size: 96
58077230 TTCAGGACTT
* * * * * * *
58077240 ATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACA
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--ACA
*
58077303 CTTTCACATTCATCACATCGGCCATTAGGCCTT
64 CTTTCACATTCATCACATCGGCCATTAGGCCTC
58077336 ATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
*
58077399 TTCACATTCATCACATCGTCCATTAGGCCTC
66 TTCACATTCATCACATCGGCCATTAGGCCTC
*
58077430 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATATACA
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACA
58077495 CTTTCACATTCATCACATCGGCCATTAGGCCTC
64 CTTTCACATTCATCACATCGGCCATTAGGCCTC
58077528 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
58077593 GTCTTGGCTG
Statistics
Matches: 239, Mismatches: 12, Indels: 12
0.91 0.05 0.05
Matches are distributed among these distances:
94 39 0.16
95 1 0.00
96 105 0.44
98 94 0.39
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.31
Consensus pattern (96 bp):
ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTC
Found at i:58081438 original size:40 final size:40
Alignment explanation
Indices: 58081392--58081743 Score: 542
Period size: 40 Copynumber: 8.8 Consensus size: 40
58081382 CCAGCATGAT
* * * *
58081392 TGCTCTTCGGGACCTAGCCAGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* ** *
58081432 TTCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
58081472 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
58081512 TGCTCTCCGGGATTTAACCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
58081552 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
58081592 TGCTCTTCGGGACTTAGCCCGGATATATCACTACCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
58081632 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
58081672 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
58081712 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
58081744 CTCAATTCTC
Statistics
Matches: 280, Mismatches: 32, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 280 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:58083003 original size:37 final size:37
Alignment explanation
Indices: 58082953--58083031 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
58082943 TTATTACGAA
* * *
58082953 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
58082990 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
58083027 GTCTT
1 GTCTT
58083032 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:58083228 original size:47 final size:47
Alignment explanation
Indices: 58083150--58083593 Score: 748
Period size: 47 Copynumber: 9.4 Consensus size: 47
58083140 CCCTTCGGGA
* * * * * *
58083150 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58083197 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58083244 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58083291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58083338 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58083385 C-TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58083433 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58083482 C-TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58083528 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58083575 CTTATCACATATATACACT
1 CTTATCACATATATACACT
58083594 GTCTTGGCTG
Statistics
Matches: 380, Mismatches: 13, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
46 46 0.12
47 241 0.63
48 45 0.12
49 48 0.13
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58083646 original size:142 final size:140
Alignment explanation
Indices: 58083150--58083593 Score: 746
Period size: 142 Copynumber: 3.1 Consensus size: 140
58083140 CCCTTCGGGA
* * * * * * *
58083150 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CCTATCACATATATACAC
58083215 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
58083280 GGCCATTAGGC
130 GGCCATTAGGC
58083291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATACAC
*
58083356 TTTCACATTCACCACATCGGCCATTAGGCC-TATCACATATATATACACTTTCACATTCATCACA
65 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
58083420 TCGGCCATTAGGC
128 TCGGCCATTAGGC
58083433 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACA
*
58083498 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTTATCACAT
64 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
58083563 CGGCCATTAGGC
129 CGGCCATTAGGC
58083575 CTTATCACATATATACACT
1 CTTATCACATATATACACT
58083594 GTCTTGGCTG
Statistics
Matches: 287, Mismatches: 10, Indels: 13
0.93 0.03 0.04
Matches are distributed among these distances:
140 19 0.07
141 84 0.29
142 93 0.32
143 45 0.16
144 46 0.16
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (140 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
GCCATTAGGC
Found at i:58089430 original size:19 final size:19
Alignment explanation
Indices: 58089408--58089445 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
58089398 TTTTGTGTAT
58089408 TTGTTAAATAGAAACTAAA
1 TTGTTAAATAGAAACTAAA
58089427 TTGTTAAATAGAAACTAAA
1 TTGTTAAATAGAAACTAAA
58089446 GTGTAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.32
Consensus pattern (19 bp):
TTGTTAAATAGAAACTAAA
Found at i:58089897 original size:43 final size:42
Alignment explanation
Indices: 58089850--58089965 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 42
58089840 TGCGATTATG
* **
58089850 TGTAAGACCATGTCTGGGACACTGGCATTGTTATATGATTTCA
1 TGTAAGACCATATCTGGGACA-TGGCATTGTTATATGATAACA
* * * * *
58089893 TGTAAGACCATCTTTGGGACATTGGCATCGATATGTGATAACA
1 TGTAAGACCATATCTGGGACA-TGGCATTGTTATATGATAACA
* * *
58089936 TGTAAGGCCATATCTAGGATATGGCATTGT
1 TGTAAGACCATATCTGGGACATGGCATTGT
58089966 ACAAGCTATA
Statistics
Matches: 58, Mismatches: 15, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
42 7 0.12
43 51 0.88
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATGGCATTGTTATATGATAACA
Found at i:58091854 original size:27 final size:27
Alignment explanation
Indices: 58091799--58091938 Score: 130
Period size: 27 Copynumber: 5.2 Consensus size: 27
58091789 AACAAATCTA
* * *
58091799 TCATTTTACCTTACT-G-GGTATTACAG
1 TCATTTTACCCTA-TAGAGGTATTTCGG
58091825 TCATTTTACCCTATAGAGGTATTTCGG
1 TCATTTTACCCTATAGAGGTATTTCGG
* * *
58091852 TCATTCTACACTATAGGGGTATTTC--
1 TCATTTTACCCTATAGAGGTATTTCGG
58091877 TACAATTTTACCCTAT-GAGAGTATTTCGG
1 T-C-ATTTTACCCTATAGAG-GTATTTCGG
*
58091906 TCATTTTACCCTATTAGA-TTATTTCGG
1 TCATTTTACCCTA-TAGAGGTATTTCGG
58091933 TCATTT
1 TCATTT
58091939 GATCGCATAC
Statistics
Matches: 95, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
25 2 0.02
26 16 0.17
27 72 0.76
28 2 0.02
29 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.15, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATAGAGGTATTTCGG
Found at i:58091974 original size:27 final size:27
Alignment explanation
Indices: 58091932--58092192 Score: 292
Period size: 27 Copynumber: 9.7 Consensus size: 27
58091922 GATTATTTCG
* * *
58091932 GTCATTTGATCGCATACGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * * *
58091959 ATCGTTTTATCACATAAGTGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* * * *
58091986 ATTATTTTATCACATAAGGGAAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* *
58092013 GTCATTTTATCAAATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
58092040 GTCATTTTATCACCTAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* **
58092067 GTCATTTTATCATATAAGAACAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
** *
58092094 GTCATTTTATCAC--AAGGATAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
*
58092119 GTCATTTTATCACATAAGAGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
58092146 GTCATTTTATTACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
58092173 ATCATTTTATCATATAAGGG
1 GTCATTTTATCACATAAGGG
58092193 TTCAGGTACA
Statistics
Matches: 197, Mismatches: 35, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
25 22 0.11
27 175 0.89
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:58092164 original size:106 final size:107
Alignment explanation
Indices: 58091932--58092190 Score: 342
Period size: 106 Copynumber: 2.4 Consensus size: 107
58091922 GATTATTTCG
* * * * * ** * *
58091932 GTCATTTGATCGCATACGGGCAAAATCATCGTTTTATCACATAAGTGCAAAATTATTATTTTATC
1 GTCATTTTATCACATAAGGGCAAAATCATCATTTTATCATATAAGAACAAAATCATCATTTTATC
*
58091997 ACATAAGGGAAAAATTGTCATTTTATCAAATAAGGGAAAAATC
66 ACA-AAGGGAAAAATTGTCATTTTATCAAATAAGAGAAAAATC
* * *
58092040 GTCATTTTATCACCTAAGGGCAAAATCGTCATTTTATCATATAAGAACAAAATCGTCATTTTATC
1 GTCATTTTATCACATAAGGGCAAAATCATCATTTTATCATATAAGAACAAAATCATCATTTTATC
* *
58092105 AC-AA-GGATAAAATTGTCATTTTATCACATAAGAGCAAAATC
66 ACAAAGGGA-AAAATTGTCATTTTATCAAATAAGAGAAAAATC
*
58092146 GTCATTTTATTACATAAGGGCAAAATCATCATTTTATCATATAAG
1 GTCATTTTATCACATAAGGGCAAAATCATCATTTTATCATATAAG
58092191 GGTTCAGGTA
Statistics
Matches: 132, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
105 3 0.02
106 74 0.56
108 55 0.42
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (107 bp):
GTCATTTTATCACATAAGGGCAAAATCATCATTTTATCATATAAGAACAAAATCATCATTTTATC
ACAAAGGGAAAAATTGTCATTTTATCAAATAAGAGAAAAATC
Found at i:58095387 original size:40 final size:40
Alignment explanation
Indices: 58095343--58095894 Score: 897
Period size: 40 Copynumber: 13.8 Consensus size: 40
58095333 CCAGCATGAT
* * * *
58095343 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
58095383 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
58095423 TGCTCTTCGGAACTTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58095463 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58095503 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
58095543 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58095583 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58095623 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
58095663 TGCTCTTTGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
58095703 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
58095743 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** *
58095783 TGCTCTTCGAAACTTAGCCCGGATACATGACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
58095823 TGCTCTTCAGGACTTAGCCCAGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
58095863 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
58095895 CTCAATTCTC
Statistics
Matches: 473, Mismatches: 39, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 473 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:58097210 original size:37 final size:37
Alignment explanation
Indices: 58097160--58097235 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
58097150 CTTTAGCTCA
58097160 GACAAAATCTCCACACGGAGTT-ATCGGGTCTTACCCG
1 GACAAAATCTCCACACGGA-TTCATCGGGTCTTACCCG
*
58097197 GACAAAATCTCCACACGTATTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGGATTCATCGGGTCTTACCCG
58097234 GA
1 GA
58097236 ATATATTTCC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
36 2 0.05
37 35 0.95
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (37 bp):
GACAAAATCTCCACACGGATTCATCGGGTCTTACCCG
Found at i:58097512 original size:50 final size:48
Alignment explanation
Indices: 58097382--58097566 Score: 273
Period size: 48 Copynumber: 3.8 Consensus size: 48
58097372 GCACATCGCC
58097382 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
58097430 TACATAGTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
58097480 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCA
* * *
58097528 TACATATTTCACATTAGCCATTCGGCCTTATCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
58097567 TGCATGTTCA
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
48 78 0.63
49 4 0.03
50 41 0.33
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:58097539 original size:98 final size:98
Alignment explanation
Indices: 58097385--58097566 Score: 294
Period size: 98 Copynumber: 1.9 Consensus size: 98
58097375 CATCGCCTAC
58097385 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCA
*
58097450 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCCTTACCACATATACATATCTCATATAT
* * * *
58097483 ATATTTCACA-TTGACCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCC
1 ATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCC
*
58097547 ATTCGGCCTTATCACATATA
65 ATTCGGCCTTACCACATATA
58097567 TGCATGTTCA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
97 2 0.03
98 75 0.97
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (98 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCA
TTCGGCCTTACCACATATACATATCTCATATAT
Found at i:58097650 original size:94 final size:94
Alignment explanation
Indices: 58097399--58097660 Score: 266
Period size: 98 Copynumber: 2.7 Consensus size: 94
58097389 TTCACACTAG
* * * * *
58097399 CCATTCGGCTTTACCACATATACATATCTCATACATAGT-TCACACTAGCCATTCGGCTTTACCA
1 CCATTCGGCCTTACCACATATGCATATCTCA-ACATA-TATCACATTAGCCATTCGGCCTTATCA
* *
58097463 CATATA--CATATCTCATATATATATTTCACATTGA
64 CATATATGCATGT-TCATAT-T-CA--TCACATTGA
* *
58097497 CCATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAGCCATTCGGCCTTATCAC
1 CCATTCGGCCTTACCACATATGCATATCTCA-ACATATATCACATTAGCCATTCGGCCTTATCAC
*
58097562 ATATATGCATGTTCATATTCATCACATTGG
65 ATATATGCATGTTCATATTCATCACATTGA
* *
58097592 CCATTCGGCCTTATCACACATATGCATGT-TC-ACAT-TCATCACATTGGCCATTCGGCCTTATC
1 CCATTCGGCCTTA-C-CACATATGCATATCTCAACATAT-ATCACATTAGCCATTCGGCCTTATC
*
58097654 TCATATA
63 ACATATA
58097661 CACACAATCA
Statistics
Matches: 146, Mismatches: 12, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
93 1 0.01
94 33 0.23
95 20 0.14
96 3 0.02
97 14 0.10
98 65 0.45
99 6 0.04
100 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.10, T:0.35
Consensus pattern (94 bp):
CCATTCGGCCTTACCACATATGCATATCTCAACATATATCACATTAGCCATTCGGCCTTATCACA
TATATGCATGTTCATATTCATCACATTGA
Found at i:58097673 original size:47 final size:47
Alignment explanation
Indices: 58097536--58097660 Score: 214
Period size: 47 Copynumber: 2.7 Consensus size: 47
58097526 CATACATATT
* *
58097536 TCACATTAGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
58097583 TCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
58097630 TCACATTGGCCATTCGGCCTTATCTCATATA
1 TCACATTGGCCATTCGGCCTTATCACATATA
58097661 CACACAATCA
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:58100445 original size:27 final size:27
Alignment explanation
Indices: 58100234--58100439 Score: 279
Period size: 27 Copynumber: 7.6 Consensus size: 27
58100224 GGGTATTTTG
*
58100234 GTCATTTGATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
58100261 TTCATTCTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
58100288 TTCATTTTA-CTACATAAGGGCAAAATC
1 GTCATTTTATC-ACATAAGGGCAAAATC
*
58100315 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
58100342 ATTATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
58100369 GTCATTTTATCACATTAGGGTAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* *
58100396 GACATTTTATCACATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
58100423 GTCTTTTTATCACATAA
1 GTCATTTTATCACATAA
58100440 AGGTAATATT
Statistics
Matches: 158, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 156 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:58100457 original size:27 final size:27
Alignment explanation
Indices: 58100234--58100470 Score: 269
Period size: 27 Copynumber: 8.8 Consensus size: 27
58100224 GGGTATTTTG
* *
58100234 GTCATTTGATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* * *
58100261 TTCATTCTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* *
58100288 TTCATTTTA-CTACATAAGGGCAAAATC
1 GTCATTTTATC-ACATAAGGGTAAAATC
*
58100315 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* * *
58100342 ATTATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* *
58100369 GTCATTTTATCACATTAGGGTAAAATT
1 GTCATTTTATCACATAAGGGTAAAATC
*
58100396 GACATTTTATCACATAAGGGTAAAATC
1 GTCATTTTATCACATAAGGGTAAAATC
* * * *
58100423 GTCTTTTTATCACATAAAGGTAATATT
1 GTCATTTTATCACATAAGGGTAAAATC
* * *
58100450 GCCATTTTATCATATTAGGGT
1 GTCATTTTATCACATAAGGGT
58100471 TCAGGTACGC
Statistics
Matches: 181, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 179 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGTAAAATC
Found at i:58104005 original size:495 final size:494
Alignment explanation
Indices: 58103076--58104061 Score: 1636
Period size: 495 Copynumber: 2.0 Consensus size: 494
58103066 ATGTTTATTT
*
58103076 AGCCTCTTCATGTGATCTAGAAAATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
1 AGCCTCTTCATATGATCTAGAAAATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
** *
58103141 AAAATGTTATTAATTCCAAAATCTCGTTTATCGCGGAAGCTTTGAAATGGTTTTGCGTATTCATG
66 AAAACATTATTAATTCCAAAATCTCGTTTATCGCGGAAGCTTTGAAATGGTTTTGCATATTCATG
*
58103206 GTATTTTAGTAAATCATGCACATCTTTTGAAAACCCGCATCCTACCACTAGAAGGTATAAATCAT
131 GTATTTTAGAAAATCATGCACATCTTTTGAAAACCCGCATCCTACCACTAGAAGGTATAAATCAT
* * *
58103271 AATAAAATAATAAAAGCCCAAATTAATAAATAAAACTTAAAGAGGCCTTTCAGATATAAATACCC
196 AATAAAATAATAAAAGCCCAAATTAATAAATAAAACTTAAAAAGGCCTTTCACATAAAAATACCC
* * *
58103336 ATATAAAATTACTTAAAAGTTAAAAGATACATTCAGAAGCGTAAGCTGTTGTGTGTTCACCTCCG
261 ATATAAAACTACTTAAAAGTTAAAAGATACATTCAAAAGCGTAAGCTATTGTGTGTTCACCTCCG
* *
58103401 AGTCCCTCGCAGCACCAATCCGCCAAAAGGATTACCTGTACAGTTAAAACAGTTAGGTGAGTTTT
326 AGTCCCTCGCAACACCAATCCGCCAAAAAGATTACCTGTACAGTTAAAACAGTTAGGTGAGTTTT
* *
58103466 CAAAAACTCAGTGTGTAATCCCAGCAATAAACAAACAGTGAACAACACAGTCTGGGCCTAAGCCC
391 CAAAAAATCAGTGTGTAATCCCAACAATAAACAAACAGTGAACAACACAGTCTGGGCCTAAGCCC
*
58103531 ATATCAGTAACAGTTCAATATCAGCTAGGGCCTTGGTCA
456 ATATCAGTAACAATTCAATATCAGCTAGGGCCTTGGTCA
* *
58103570 AGCCTCTTCGTATGATCTAGAATATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
1 AGCCTCTTCATATGATCTAGAAAATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
* *
58103635 AAAACATTATTAATTCCAAAATCTCGTTTCTCGCGGAAGCTTCTGAAATGGTTTTGCATATTCGT
66 AAAACATTATTAATTCCAAAATCTCGTTTATCGCGGAAGCTT-TGAAATGGTTTTGCATATTCAT
* *
58103700 GGTATTTTCA-AAAATCATGCACATCTTTTGAAAACCCGCATGCTACCACTAGCAGGTATAAATC
130 GGTATTTT-AGAAAATCATGCACATCTTTTGAAAACCCGCATCCTACCACTAGAAGGTATAAATC
* *
58103764 ATCATAAAATAATAAAAGCCCAAATTAA-AGAATAAATCTTAAAAAGGCCTTTCACATAAAAATA
194 ATAATAAAATAATAAAAGCCCAAATTAATA-AATAAAACTTAAAAAGGCCTTTCACATAAAAATA
* *
58103828 CCCATATAAAACTACTTATAAGTTAAAAGATACATTCAAAAGTGTAAGCTATTGTGTGTTCACCT
258 CCCATATAAAACTACTTAAAAGTTAAAAGATACATTCAAAAGCGTAAGCTATTGTGTGTTCACCT
* *
58103893 CCGAGTCCCTCGCAACACCGATCCGCCAAAAAGATTACTTGTACAGTTAAAACAGTT-GGATGAG
323 CCGAGTCCCTCGCAACACCAATCCGCCAAAAAGATTACCTGTACAGTTAAAACAGTTAGG-TGAG
* *
58103957 TTTTCAAAAAATCAGTGTGTAATCCCAACGATAAACAAACAGTGAACAACACAGTTTGGGCCTAA
387 TTTTCAAAAAATCAGTGTGTAATCCCAACAATAAACAAACAGTGAACAACACAGTCTGGGCCTAA
*
58104022 GCCCATATCAGTAACAATTCAATATCAGTTAGGGCCTTGG
452 GCCCATATCAGTAACAATTCAATATCAGCTAGGGCCTTGG
58104062 CCCATTCTGT
Statistics
Matches: 457, Mismatches: 31, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
494 104 0.23
495 352 0.77
496 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (494 bp):
AGCCTCTTCATATGATCTAGAAAATAATTTTAAAACTTGCGTCACTATCAAAAAGTATTTACTTT
AAAACATTATTAATTCCAAAATCTCGTTTATCGCGGAAGCTTTGAAATGGTTTTGCATATTCATG
GTATTTTAGAAAATCATGCACATCTTTTGAAAACCCGCATCCTACCACTAGAAGGTATAAATCAT
AATAAAATAATAAAAGCCCAAATTAATAAATAAAACTTAAAAAGGCCTTTCACATAAAAATACCC
ATATAAAACTACTTAAAAGTTAAAAGATACATTCAAAAGCGTAAGCTATTGTGTGTTCACCTCCG
AGTCCCTCGCAACACCAATCCGCCAAAAAGATTACCTGTACAGTTAAAACAGTTAGGTGAGTTTT
CAAAAAATCAGTGTGTAATCCCAACAATAAACAAACAGTGAACAACACAGTCTGGGCCTAAGCCC
ATATCAGTAACAATTCAATATCAGCTAGGGCCTTGGTCA
Found at i:58104592 original size:27 final size:27
Alignment explanation
Indices: 58104501--58104588 Score: 113
Period size: 27 Copynumber: 3.3 Consensus size: 27
58104491 ACTGTACAGG
* *
58104501 GGTATTTCAGTCATTCTACCTTATAAA
1 GGTATTTCGGTCATTCTACCTTATGAA
*
58104528 GGTATTTCGATCATTCTACCTTATGAA
1 GGTATTTCGGTCATTCTACCTTATGAA
* * * *
58104555 GGTATTTTGGTCATTTTACCCTATGAG
1 GGTATTTCGGTCATTCTACCTTATGAA
58104582 GGTATTT
1 GGTATTT
58104589 TGGTTATTTC
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.43
Consensus pattern (27 bp):
GGTATTTCGGTCATTCTACCTTATGAA
Found at i:58104852 original size:27 final size:27
Alignment explanation
Indices: 58104594--58104851 Score: 322
Period size: 27 Copynumber: 9.6 Consensus size: 27
58104584 TATTTTGGTT
* *
58104594 ATTTCATCACATAAGGGCAAAATTGTC
1 ATTTTATCACATAAGGGCAAAATCGTC
*
58104621 ATTTTATCACATAAGGGCAAAATTGTC
1 ATTTTATCACATAAGGGCAAAATCGTC
*
58104648 ATTTTATCACATAAGGGCAAAATTGTC
1 ATTTTATCACATAAGGGCAAAATCGTC
* *
58104675 ATTTTATCACATAAGGGCAAAATCATT
1 ATTTTATCACATAAGGGCAAAATCGTC
* * *
58104702 ATTTTATCATATAAGGGTAAAATCATC
1 ATTTTATCACATAAGGGCAAAATCGTC
* *
58104729 ATTTTATCACATAATGGTAAAATCGTC
1 ATTTTATCACATAAGGGCAAAATCGTC
**
58104756 ATTTTATCATTTAAGGGCAAAATCGTC
1 ATTTTATCACATAAGGGCAAAATCGTC
* *
58104783 ATTTTATCACAT--GTGTAAAATCGTC
1 ATTTTATCACATAAGGGCAAAATCGTC
* * * *
58104808 ATTTTATCACAAAAGGGTAAAATTGCC
1 ATTTTATCACATAAGGGCAAAATCGTC
*
58104835 ATTTTATCATATAAGGG
1 ATTTTATCACATAAGGG
58104852 TTTAGATACG
Statistics
Matches: 205, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
25 22 0.11
27 183 0.89
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (27 bp):
ATTTTATCACATAAGGGCAAAATCGTC
Found at i:58106629 original size:30 final size:30
Alignment explanation
Indices: 58106593--58106652 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
58106583 TTCTCAAGCC
58106593 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
58106623 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
58106653 CGTATTAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:58121757 original size:40 final size:40
Alignment explanation
Indices: 58121683--58121863 Score: 251
Period size: 40 Copynumber: 4.6 Consensus size: 40
58121673 AACCCAAGTA
* * *
58121683 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
58121722 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
58121762 CCTTCGGGACTTAGCCC-GATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
58121801 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
58121841 CCTTCGGGACTTAACCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
58121864 CATTCGAATA
Statistics
Matches: 126, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 48 0.38
40 75 0.60
41 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:58121814 original size:79 final size:79
Alignment explanation
Indices: 58121683--58121863 Score: 265
Period size: 79 Copynumber: 2.3 Consensus size: 79
58121673 AACCCAAGTA
* * * * *
58121683 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCCGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
58121748 CAATAGCACAAAAG
66 CAATAGCACAAAAG
*
58121762 CCTTCGGGACTTAGCCCGATATAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
1 CCTTCGGGACTTAGCCCGATAT-AGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
58121826 TCAATAGCACAAATG
65 TCAATAGCACAAAAG
*
58121841 CCTTCGGGACTTAACCCAGATAT
1 CCTTCGGGACTTAGCCC-GATAT
58121864 CATTCGAATA
Statistics
Matches: 92, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
79 85 0.92
80 7 0.08
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAAT
CAATAGCACAAAAG
Found at i:58130165 original size:40 final size:40
Alignment explanation
Indices: 58130106--58130287 Score: 226
Period size: 40 Copynumber: 4.6 Consensus size: 40
58130096 AACCCAAGTA
* * *
58130106 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAAGCAA-TAGCACAAATG
* * * *
58130145 CCTTCGAGTCTCAGCCCGGATAT-AGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAAG-CAATAGCACAAATG
* *
58130185 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAAGCAATAGCACAAATG
*
58130225 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAAGCAATAGCACAAATG
*
58130265 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
58130288 CATTCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
39 10 0.08
40 111 0.89
41 4 0.03
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAAGCAATAGCACAAATG
Found at i:58130241 original size:80 final size:80
Alignment explanation
Indices: 58130106--58130287 Score: 251
Period size: 80 Copynumber: 2.3 Consensus size: 80
58130096 AACCCAAGTA
* * * * *
58130106 CCTTCGGGATTTAG-CCGGATATAGCAACTCGTACAAATGCCTTCGAGTCTCAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTCAGCCCGGATATAA
58130170 TCAATAGCACAAAAG
66 TCAATAGCACAAAAG
* * *
58130185 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATAT-AGCAACTAGCACAAATGCCTTCGAGACTCAGCCCGGATATA
*
58130249 ATCAATAGCACAAATG
65 ATCAATAGCACAAAAG
*
58130265 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
58130288 CATTCGAATA
Statistics
Matches: 91, Mismatches: 10, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
79 13 0.14
80 76 0.84
81 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGAGACTCAGCCCGGATATAA
TCAATAGCACAAAAG
Found at i:58132493 original size:29 final size:28
Alignment explanation
Indices: 58132474--58132560 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 28
58132464 CATATTCATT
*
58132474 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACAT-TATA
58132503 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACA-TTATA
* *
58132532 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATT-ATA
58132560 T
1 T
58132561 TCATGCTCGC
Statistics
Matches: 53, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.04
28 10 0.19
29 40 0.75
30 1 0.02
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACATTATA
Found at i:58157374 original size:23 final size:24
Alignment explanation
Indices: 58157343--58157391 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 24
58157333 GAGTTTATTC
*
58157343 AAAATGAAACCAAAATTTTCT-TA
1 AAAAAGAAACCAAAATTTTCTCTA
58157366 AAAAAGAAACCAAAATTTTCTCTA
1 AAAAAGAAACCAAAATTTTCTCTA
58157390 AA
1 AA
58157392 GCCTAGGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.55, C:0.14, G:0.04, T:0.27
Consensus pattern (24 bp):
AAAAAGAAACCAAAATTTTCTCTA
Found at i:58162874 original size:50 final size:49
Alignment explanation
Indices: 58162767--58162888 Score: 163
Period size: 50 Copynumber: 2.5 Consensus size: 49
58162757 CATAGTAGTT
* * **
58162767 TGCACTTAGTACTACACATGCGACCAACAATCTGGTAAACGTAGTAGCC
1 TGCACTTAGTACTACACACGTGACCAACAATCTAATAAACGTAGTAGCC
* * * *
58162816 TGCACTTAGTACTACACACGTGACCTCACCATCTAATATATGTAGTAGCC
1 TGCACTTAGTACTACACACGTGACC-AACAATCTAATAAACGTAGTAGCC
58162866 TGCACTTAGTACTACACACGTGA
1 TGCACTTAGTACTACACACGTGA
58162889 TCACAGTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 23 0.36
50 41 0.64
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (49 bp):
TGCACTTAGTACTACACACGTGACCAACAATCTAATAAACGTAGTAGCC
Found at i:58164994 original size:14 final size:15
Alignment explanation
Indices: 58164975--58165038 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 15
58164965 TAAAGATAAC
58164975 AAGAAAACC-GAATA
1 AAGAAAACCAGAATA
*
58164989 AAGAAATCCA-AA-A
1 AAGAAAACCAGAATA
*
58165002 TAGAAAACCCCAGAATA
1 AAGAAAA--CCAGAATA
*
58165019 AA-AAATCCAGAATA
1 AAGAAAACCAGAATA
58165033 AAGAAA
1 AAGAAA
58165039 CCCAAGATAC
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
13 6 0.15
14 20 0.51
15 6 0.15
16 5 0.13
17 2 0.05
ACGTcount: A:0.64, C:0.16, G:0.11, T:0.09
Consensus pattern (15 bp):
AAGAAAACCAGAATA
Found at i:58165018 original size:15 final size:14
Alignment explanation
Indices: 58164984--58165042 Score: 55
Period size: 15 Copynumber: 4.0 Consensus size: 14
58164974 CAAGAAAACC
*
58164984 GAATAAAGAAATCCA
1 GAATAAA-AAACCCA
* *
58164999 AAATAGAAAACCCCA
1 GAATA-AAAAACCCA
*
58165014 GAATAAAAAATCCA
1 GAATAAAAAACCCA
58165028 GAATAAAGAAACCCA
1 GAATAAA-AAACCCA
58165043 AGATACGATA
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
14 14 0.40
15 19 0.54
16 2 0.06
ACGTcount: A:0.61, C:0.19, G:0.10, T:0.10
Consensus pattern (14 bp):
GAATAAAAAACCCA
Found at i:58165474 original size:18 final size:18
Alignment explanation
Indices: 58165451--58165487 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
58165441 TAGAACATCT
58165451 TAGAAGAAACTACTAAAA
1 TAGAAGAAACTACTAAAA
*
58165469 TAGAAGAAACTGCTAAAA
1 TAGAAGAAACTACTAAAA
58165487 T
1 T
58165488 CTGTCCAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.57, C:0.11, G:0.14, T:0.19
Consensus pattern (18 bp):
TAGAAGAAACTACTAAAA
Found at i:58166813 original size:35 final size:35
Alignment explanation
Indices: 58166774--58166843 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
58166764 AGGTCGAAAC
* *
58166774 AGAGTACGAGGCATTACTAGACTTAACAATATACA
1 AGAGTACGAGGCATTACCAAACTTAACAATATACA
58166809 AGAGTACGAGGCATTACCAAACTTAACAATATACA
1 AGAGTACGAGGCATTACCAAACTTAACAATATACA
58166844 TACACGCAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (35 bp):
AGAGTACGAGGCATTACCAAACTTAACAATATACA
Found at i:58168278 original size:51 final size:48
Alignment explanation
Indices: 58168105--58168291 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 48
58168095 GTCGAAGCTA
* *
58168105 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGATCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAG
* *
58168154 TCTGGTACACATAGTAGCCTGCATTTAGAACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA--TCA-CAG
** **
58168204 TCTAATACATGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
*
58168252 TTTTCGGGTACACATAGTAGCCTGCACTTAGTACTACACA
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
58168292 TGCGACCTCA
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
47 2 0.02
48 3 0.03
49 38 0.33
50 37 0.32
51 36 0.31
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (48 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGATCACAG
Found at i:58168299 original size:101 final size:99
Alignment explanation
Indices: 58168116--58168302 Score: 277
Period size: 101 Copynumber: 1.9 Consensus size: 99
58168106 CTGGTACACA
* * *
58168116 TAGTAGCCTGCACTTAGTACTACACATGCGATCAACAGTCTGGTACACATAGTAGCCTGCATTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGATCAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
58168181 GAACTACACACGTGACCTCACCATCTAATACATG
66 GAACTACACACGCGACCTCACCATCTAATACATG
*
58168215 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACACATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGATCAACAG---TCGGGTACACATAGTAGCCTGCAC
* *
58168279 TTAGTACTACACATGCGACCTCAC
63 TTAGAACTACACACGCGACCTCAC
58168303 AATAGATCAT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
98 4 0.05
99 31 0.40
101 43 0.55
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGATCAACAGTCGGGTACACATAGTAGCCTGCACTTA
GAACTACACACGCGACCTCACCATCTAATACATG
Found at i:58169220 original size:25 final size:25
Alignment explanation
Indices: 58169182--58169231 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
58169172 CATAAGCTAA
*
58169182 ATCAAGTTAGCGGGACTCCAAAAAC
1 ATCAAGTTACCGGGACTCCAAAAAC
58169207 ATCAAGTTACCGGGACTCCAAAAAC
1 ATCAAGTTACCGGGACTCCAAAAAC
58169232 GTAAAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.26, G:0.18, T:0.16
Consensus pattern (25 bp):
ATCAAGTTACCGGGACTCCAAAAAC
Found at i:58175101 original size:42 final size:43
Alignment explanation
Indices: 58175054--58175158 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 43
58175044 GAGCTACTGA
* * * *
58175054 GATTTCATATAAGAGCATATCTGGGATATGGCATCGGTATG-T
1 GATTTCATATAAGACCATATCAGGGACATGGCATCGATATGAT
*
58175096 GATTTCATATAAGACCATGTCAGGGACATGGCATCGATATGAT
1 GATTTCATATAAGACCATATCAGGGACATGGCATCGATATGAT
*
58175139 -ATTTCATGTAAGACCATATC
1 GATTTCATATAAGACCATATC
58175159 CAGGATTTGA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 54 0.98
43 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31
Consensus pattern (43 bp):
GATTTCATATAAGACCATATCAGGGACATGGCATCGATATGAT
Found at i:58180714 original size:33 final size:33
Alignment explanation
Indices: 58180672--58180737 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
58180662 AAAATAATTG
58180672 TTTTATTATTATTTTAATGTTTACAACATGTTA
1 TTTTATTATTATTTTAATGTTTACAACATGTTA
58180705 TTTTATTATTATTTTAATGTTTACAACATGTTA
1 TTTTATTATTATTTTAATGTTTACAACATGTTA
58180738 GTAGTGTCGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (33 bp):
TTTTATTATTATTTTAATGTTTACAACATGTTA
Found at i:58183477 original size:28 final size:28
Alignment explanation
Indices: 58183423--58183492 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
58183413 ATAGTAAGTC
* *
58183423 CGCACACTTAGTACTTAATAATCAAACT
1 CGCACACTTAGTGCTTAACAATCAAACT
*
58183451 CGCACACTTAGTGC-TATACAATTAAACT
1 CGCACACTTAGTGCTTA-ACAATCAAACT
58183479 CGCACACTTAGTGC
1 CGCACACTTAGTGC
58183493 CAATCTCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 2 0.05
28 36 0.95
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAACAATCAAACT
Found at i:58185574 original size:27 final size:26
Alignment explanation
Indices: 58185503--58185617 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
58185493 AGCATGGCTG
* * *
58185503 CCAGAATAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* *
58185529 CCAGGTACATATATTGTGGCAGAGCCA
1 CCA-GAACAGATATTGTGGCAGAGCCA
*
58185556 CCAGAACAGATATTAGTGGCAAAGCCA
1 CCAGAACAGATATT-GTGGCAGAGCCA
* *
58185583 CCAGAAACAGATACTTGTAGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
58185611 CCAGAAC
1 CCAGAAC
58185618 GCTTCCTCCA
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 12 0.16
27 39 0.52
28 22 0.29
29 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:58187741 original size:46 final size:46
Alignment explanation
Indices: 58187688--58187870 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
58187678 TATATATACA
* * * *
58187688 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
58187734 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
58187780 CATCTCATACACGTTTCGCATTATCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
58187826 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
58187871 ATACACTTCC
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.25, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:58187915 original size:47 final size:47
Alignment explanation
Indices: 58187844--58188222 Score: 589
Period size: 47 Copynumber: 8.1 Consensus size: 47
58187834 ACACATTTCG
* * * * * *
58187844 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
58187891 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
58187938 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
58187985 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
58188032 CATTGGCCATTCAGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
58188079 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
58188126 CATTGGCCATTCGCCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
58188173 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
58188220 CAT
1 CAT
58188223 AAAATCCTAA
Statistics
Matches: 310, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 309 1.00
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:58187962 original size:22 final size:22
Alignment explanation
Indices: 58187934--58188008 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
58187924 GTTCACATTC
58187934 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
58187956 ATCACATATATGCATATTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
58187980 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
58188003 ATCACA
1 ATCACA
58188009 CATATGCATG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 17 0.43
23 6 0.15
24 6 0.15
25 11 0.28
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:58190941 original size:11 final size:11
Alignment explanation
Indices: 58190916--58190952 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
58190906 CTATGAGAGC
58190916 AAAAG-AAAA-
1 AAAAGAAAAAT
58190925 AAAAGAAAAAT
1 AAAAGAAAAAT
58190936 AAAAGAAAAAT
1 AAAAGAAAAAT
58190947 AAAAGA
1 AAAAGA
58190953 TGAATGAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
11 17 0.65
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (11 bp):
AAAAGAAAAAT
Found at i:58194070 original size:27 final size:27
Alignment explanation
Indices: 58194033--58194147 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
58194023 AGCATAGCTG
* *
58194033 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
58194059 CCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGA-ACAGATATTTGTGGCAGAGCCA
* *
58194086 CCAGAATAGATATTTGTGGCGGAGCCA
1 CCAGAACAGATATTTGTGGCAGAGCCA
* *
58194113 CCAGAAATAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATATTTGTGGCAGAGCCA
58194141 CCAGAAC
1 CCAGAAC
58194148 GCTTCCTCCA
Statistics
Matches: 79, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 11 0.14
27 43 0.54
28 25 0.32
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGAACAGATATTTGTGGCAGAGCCA
Found at i:58194312 original size:27 final size:26
Alignment explanation
Indices: 58194251--58194312 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
58194241 AAATTAACCC
*
58194251 TAGGGGTATAACGGTCATTTTGCACT
1 TAGGGGTATAACGGTAATTTTGCACT
*
58194277 TAGGGGTATAATGGTAATTTT-CATACT
1 TAGGGGTATAACGGTAATTTTGC--ACT
58194304 TAGGGGTAT
1 TAGGGGTAT
58194313 TTTAGTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 1 0.03
26 19 0.59
27 12 0.38
ACGTcount: A:0.26, C:0.10, G:0.27, T:0.37
Consensus pattern (26 bp):
TAGGGGTATAACGGTAATTTTGCACT
Done.