Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 170 of 345
Found at i:58197370 original size:40 final size:40
Alignment explanation
Indices: 58197320--58197544 Score: 294
Period size: 40 Copynumber: 5.6 Consensus size: 40
58197310 ACTACTCACT
* *
58197320 CAAATGCCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
58197360 CAATTGCCTTCGGGACTTAGCTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
58197400 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAA-TGAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACT-CGCA
*
58197440 CAAATGCCTTCGGGACTTAACCC-GATTTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTTAGTAACTCGCA
* * * **
58197480 CAAATACCTTCGGGACTTAGCCCGGATTTAGTCACTAGTG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
58197520 CAGATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
58197545 TTATCATCCA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.02
40 155 0.95
41 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:58197527 original size:120 final size:120
Alignment explanation
Indices: 58197320--58197544 Score: 333
Period size: 120 Copynumber: 1.9 Consensus size: 120
58197310 ACTACTCACT
* * * * *
58197320 CAAATGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACAATTGCCTTCGGGACTTAGCTCGG
1 CAAATGCCTTCGGGACATAACCCGATTAGAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGG
*
58197385 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATGAGCA
66 ATTTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATGAGCA
* **
58197440 CAAATGCCTTCGGGACTTAACCCGATTTTAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACATAACCCGATTAGAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGG
* ** *
58197505 ATTTAGTCACTAGTGCAGATGCCTTCGGGACTTAGCCCGG
66 ATTTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
58197545 TTATCATCCA
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
120 92 1.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGATTAGAGTAACTCGCACAAATACCTTCGGGACTTAGCCCGG
ATTTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAATGAGCA
Found at i:58201168 original size:27 final size:27
Alignment explanation
Indices: 58201138--58201397 Score: 335
Period size: 27 Copynumber: 9.7 Consensus size: 27
58201128 CCCTAATTGA
* * *
58201138 TAAAATAATTGTTTTGCCCTTATACGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
58201165 TAAAATGAATGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* * *
58201192 TAAAATGATTGTTTTGCCCTAAT-TGA
1 TAAAATGACTGTTTTGCCCTTATATGG
*
58201218 TAAAATGACTGTTCTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* * *
58201245 TAAAATGACTATTTTGCCCTAAT-TGA
1 TAAAATGACTGTTTTGCCCTTATATGG
58201271 TAAAATGACTGTTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
58201298 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGG
* *
58201325 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGG
**
58201352 TAAAATGACTGTTTCACCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGG
*
58201379 TAAATTGACTGTTTTGCCC
1 TAAAATGACTGTTTTGCCC
58201398 CTATGTGATA
Statistics
Matches: 204, Mismatches: 27, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
26 45 0.22
27 159 0.78
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATATGG
Found at i:58201246 original size:53 final size:54
Alignment explanation
Indices: 58201138--58201397 Score: 335
Period size: 53 Copynumber: 4.9 Consensus size: 54
58201128 CCCTAATTGA
* * * * *
58201138 TAAAATAATTGTTTTGCCCTTATACGGTAAAATGAATGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATATGG
* * * *
58201192 TAAAATGATTGTTTTGCCCTAAT-TGATAAAATGACTGTTCTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATATGG
* * *
58201245 TAAAATGACTATTTTGCCCTAAT-TGATAAAATGACTGTTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATATGG
* * * *
58201298 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATATGG
** *
58201352 TAAAATGACTGTTTCACCCTTATATGGTAAATTGACTGTTTTGCCC
1 TAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTGTTTTGCCC
58201398 CTATGTGATA
Statistics
Matches: 185, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 97 0.52
54 88 0.48
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (54 bp):
TAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTGTTTTGCCCTTATATGG
Found at i:58201261 original size:80 final size:81
Alignment explanation
Indices: 58201128--58201397 Score: 357
Period size: 80 Copynumber: 3.4 Consensus size: 81
58201118 TGTGCTGGAC
* * * * *
58201128 CCCTAAT-TGATAAAATAATTGTTTTGCCCTTATACGGTAAAATGAATGTTTTGCCCTTATGTGG
1 CCCTAATATGATAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATGTGG
*
58201192 TAAAATGATTGTTTTG
66 TAAAATGACTGTTTTG
* * *
58201208 CCCTAAT-TGATAAAATGACTGTTCTGCCCTTATATGGTAAAATGACTATTTTGCCCTAAT-TGA
1 CCCTAATATGATAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATGTGG
58201271 TAAAATGACTGTTTTG
66 TAAAATGACTGTTTTG
* * * *
58201287 CCCTTATATGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTATTTTGCCCTTATGTGG
1 CCCTAATATGATAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATGTGG
**
58201352 TAAAATGACTGTTTCA
66 TAAAATGACTGTTTTG
* * *
58201368 CCCTTATATGGTAAATTGACTGTTTTGCCC
1 CCCTAATATGATAAAATGACTGTTTTGCCC
58201398 CTATGTGATA
Statistics
Matches: 168, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 23 0.14
80 101 0.60
81 44 0.26
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.40
Consensus pattern (81 bp):
CCCTAATATGATAAAATGACTGTTTTGCCCTTATATGGTAAAATGACTATTTTGCCCTTATGTGG
TAAAATGACTGTTTTG
Found at i:58207736 original size:69 final size:70
Alignment explanation
Indices: 58207604--58207736 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
58207594 TAGTTTATTA
* * * *
58207604 CTAATTAATATGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
58207669 CTTAG
66 CTTAG
58207674 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
58207737 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 35 0.59
70 24 0.41
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:58209262 original size:47 final size:47
Alignment explanation
Indices: 58209208--58209753 Score: 966
Period size: 47 Copynumber: 11.6 Consensus size: 47
58209198 TATTTGAATA
58209208 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58209255 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58209302 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58209349 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58209396 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58209443 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58209490 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58209537 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
58209586 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58209633 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
58209680 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58209727 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
58209754 TCCCGAAGGG
Statistics
Matches: 479, Mismatches: 18, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
47 434 0.91
49 45 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:58212678 original size:27 final size:27
Alignment explanation
Indices: 58212648--58212880 Score: 234
Period size: 27 Copynumber: 8.7 Consensus size: 27
58212638 CCCTAATTGA
* * *
58212648 TAAAATGACTATTTTACCCTTTTATAG
1 TAAAATGACTATTTTGCCCTTATATGG
* * * *
58212675 TAAAAGGACTGTTTTGCCCTAAT-TGA
1 TAAAATGACTATTTTGCCCTTATATGG
* * *
58212701 TAAAATGATTGTTTTGCCTTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
*
58212728 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
* * *
58212755 TAAAATGATTATTTTGCCATTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
* * *
58212782 TAAAATGTCTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
* *
58212809 TAAAAAGACTATTTTTCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
* * * *
58212836 TAAAATAATTGTTTCGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
* *
58212863 TAAATTGACTGTTTTGCC
1 TAAAATGACTATTTTGCC
58212881 ACTATGCGAT
Statistics
Matches: 168, Mismatches: 37, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
26 20 0.12
27 148 0.88
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATATGG
Found at i:58212822 original size:81 final size:80
Alignment explanation
Indices: 58212648--58212880 Score: 270
Period size: 81 Copynumber: 2.9 Consensus size: 80
58212638 CCCTAATTGA
* * * * * *
58212648 TAAAATGACTATTTTACCCTTTTATAGTAAAAGGACTGTTTTGCCCTAATTGATAAAATGAT-TG
1 TAAAATGACTATTTTACCCTTATATGGTAAAATGATTGTTTTGCCCTTATTGGTAAAATG-TCTG
*
58212712 TTTTGCCTTTATATGG
65 TTTTGCCCTTATATGG
* * * *
58212728 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTATTTTGCCATTATGTGGTAAAATGTCTG
1 TAAAATGACTATTTTACCCTTATATGGTAAAATGATTGTTTTGCCCTTAT-TGGTAAAATGTCTG
*
58212793 TTTTGCCCTTATGTGG
65 TTTTGCCCTTATATGG
* * * * * *
58212809 TAAAAAGACTATTTTTCCCTTATATGGTAAAATAATTGTTTCGCCCTTATATGGTAAATTGACTG
1 TAAAATGACTATTTTACCCTTATATGGTAAAATGATTGTTTTGCCCTTAT-TGGTAAAATGTCTG
58212874 TTTTGCC
65 TTTTGCC
58212881 ACTATGCGAT
Statistics
Matches: 129, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 42 0.33
81 87 0.67
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.42
Consensus pattern (80 bp):
TAAAATGACTATTTTACCCTTATATGGTAAAATGATTGTTTTGCCCTTATTGGTAAAATGTCTGT
TTTGCCCTTATATGG
Found at i:58215365 original size:22 final size:22
Alignment explanation
Indices: 58215337--58215390 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
58215327 TTTGAATGCT
*
58215337 TATTGATGTTAGGGTCATATGG
1 TATTGATGTAAGGGTCATATGG
58215359 TATTGATGTAAGGGTCATATGG
1 TATTGATGTAAGGGTCATATGG
58215381 TATTGATGTA
1 TATTGATGTA
58215391 TTTTGGTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.26, C:0.04, G:0.30, T:0.41
Consensus pattern (22 bp):
TATTGATGTAAGGGTCATATGG
Found at i:58224873 original size:46 final size:46
Alignment explanation
Indices: 58224823--58224995 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
58224813 TGGTTGAGCA
* *
58224823 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
58224869 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* *
58224914 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
58224962 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58224996 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 57 0.55
47 28 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:58224979 original size:93 final size:93
Alignment explanation
Indices: 58224820--58224990 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
58224810 GGATGGTTGA
* * *
58224820 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCATTGAGT
58224885 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
58224913 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCATTGAGT
58224978 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
58224991 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58232467 original size:46 final size:45
Alignment explanation
Indices: 58232411--58232583 Score: 170
Period size: 46 Copynumber: 3.8 Consensus size: 45
58232401 TGGTTGAGCA
* *
58232411 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATAC-AACG
* * * * *
58232457 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATAC-A-ACG
* * *
58232504 TCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATAC-AACG
* *
58232550 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58232584 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
45 1 0.01
46 66 0.65
47 34 0.33
48 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAACG
Found at i:58232567 original size:93 final size:93
Alignment explanation
Indices: 58232408--58232578 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
58232398 AGATGGTTGA
* * *
58232408 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGT
58232473 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
58232501 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGT
58232566 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
58232579 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58232845 original size:19 final size:20
Alignment explanation
Indices: 58232808--58232845 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
58232798 ATATGGTGGT
58232808 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
58232828 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
58232846 TGGTGGCACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:58240655 original size:69 final size:70
Alignment explanation
Indices: 58240523--58240655 Score: 223
Period size: 69 Copynumber: 1.9 Consensus size: 70
58240513 TAGTTTATTA
* * * *
58240523 CTAATTAATATGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
58240588 CTTAG
66 CTTAG
58240593 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
58240656 GTTATGTGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
69 35 0.59
70 24 0.41
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:58242084 original size:47 final size:47
Alignment explanation
Indices: 58242030--58242526 Score: 863
Period size: 47 Copynumber: 10.6 Consensus size: 47
58242020 TATTTGAATA
58242030 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58242077 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58242123 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58242170 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58242217 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58242264 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
58242313 AATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58242359 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58242406 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
58242453 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
58242500 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
58242527 TCCCGAAGGG
Statistics
Matches: 434, Mismatches: 12, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
46 92 0.21
47 297 0.68
49 45 0.10
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:58242387 original size:189 final size:188
Alignment explanation
Indices: 58242030--58242526 Score: 881
Period size: 189 Copynumber: 2.6 Consensus size: 188
58242020 TATTTGAATA
* *
58242030 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
58242095 TGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
58242159 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
131 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58242217 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
58242282 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
64 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
58242347 -GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
129 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
58242406 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * * * *
58242471 TGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
58242527 TCCCGAAGGG
Statistics
Matches: 298, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
187 112 0.38
189 140 0.47
190 46 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (188 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:58242455 original size:236 final size:236
Alignment explanation
Indices: 58242030--58242526 Score: 912
Period size: 236 Copynumber: 2.1 Consensus size: 236
58242020 TATTTGAATA
58242030 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
58242093 TATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 TATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
* *
58242158 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
*
58242223 AAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
196 AAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
58242264 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
58242329 TATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
66 TATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
58242394 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
* *
58242459 AAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
196 AAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
*
58242500 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
58242527 TCCCGAAGGG
Statistics
Matches: 255, Mismatches: 6, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
234 22 0.09
235 1 0.00
236 232 0.91
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (236 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGATAAGGCCTAATGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
Found at i:58245451 original size:27 final size:27
Alignment explanation
Indices: 58245421--58245653 Score: 234
Period size: 27 Copynumber: 8.7 Consensus size: 27
58245411 CCCTAATTGA
* * *
58245421 TAAAATGACTATTTTACCCTTTTATAG
1 TAAAATGACTATTTTGCCCTTATATGG
* * * *
58245448 TAAAAGGACTGTTTTGCCCTAAT-TGA
1 TAAAATGACTATTTTGCCCTTATATGG
* * *
58245474 TAAAATGATTGTTTTGCCTTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
*
58245501 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
* * *
58245528 TAAAATGATTATTTTGCCATTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
* * *
58245555 TAAAATGTCTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATATGG
* *
58245582 TAAAAAGACTATTTTTCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
* * * *
58245609 TAAAATAATTGTTTCGCCCTTATATGG
1 TAAAATGACTATTTTGCCCTTATATGG
* *
58245636 TAAATTGACTGTTTTGCC
1 TAAAATGACTATTTTGCC
58245654 ACTATGCGAT
Statistics
Matches: 168, Mismatches: 37, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
26 20 0.12
27 148 0.88
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATATGG
Found at i:58245595 original size:81 final size:80
Alignment explanation
Indices: 58245421--58245653 Score: 270
Period size: 81 Copynumber: 2.9 Consensus size: 80
58245411 CCCTAATTGA
* * * * * *
58245421 TAAAATGACTATTTTACCCTTTTATAGTAAAAGGACTGTTTTGCCCTAATTGATAAAATGAT-TG
1 TAAAATGACTATTTTACCCTTATATGGTAAAATGATTGTTTTGCCCTTATTGGTAAAATG-TCTG
*
58245485 TTTTGCCTTTATATGG
65 TTTTGCCCTTATATGG
* * * *
58245501 TAAAATGACTATTTTGCCCTTATGTGGTAAAATGATTATTTTGCCATTATGTGGTAAAATGTCTG
1 TAAAATGACTATTTTACCCTTATATGGTAAAATGATTGTTTTGCCCTTAT-TGGTAAAATGTCTG
*
58245566 TTTTGCCCTTATGTGG
65 TTTTGCCCTTATATGG
* * * * * *
58245582 TAAAAAGACTATTTTTCCCTTATATGGTAAAATAATTGTTTCGCCCTTATATGGTAAATTGACTG
1 TAAAATGACTATTTTACCCTTATATGGTAAAATGATTGTTTTGCCCTTAT-TGGTAAAATGTCTG
58245647 TTTTGCC
65 TTTTGCC
58245654 ACTATGCGAT
Statistics
Matches: 129, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 42 0.33
81 87 0.67
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.42
Consensus pattern (80 bp):
TAAAATGACTATTTTACCCTTATATGGTAAAATGATTGTTTTGCCCTTATTGGTAAAATGTCTGT
TTTGCCCTTATATGG
Found at i:58245949 original size:23 final size:24
Alignment explanation
Indices: 58245923--58245967 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
58245913 TTATCCCCAC
*
58245923 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
58245946 ATGGAGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
58245968 GTAGGACTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.22, C:0.02, G:0.51, T:0.24
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:58248138 original size:22 final size:22
Alignment explanation
Indices: 58248110--58248162 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
58248100 TTTGAATGCT
58248110 TATTGATGTTAGGGTCATATGG
1 TATTGATGTTAGGGTCATATGG
58248132 TATTGATGTTAGGGTCATATGG
1 TATTGATGTTAGGGTCATATGG
*
58248154 TGTTGATGT
1 TATTGATGT
58248163 ATTTTGGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.21, C:0.04, G:0.32, T:0.43
Consensus pattern (22 bp):
TATTGATGTTAGGGTCATATGG
Found at i:58250698 original size:13 final size:13
Alignment explanation
Indices: 58250680--58250704 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58250670 GTATTGATCA
58250680 TGTGTTCACACCT
1 TGTGTTCACACCT
58250693 TGTGTTCACACC
1 TGTGTTCACACC
58250705 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:58251802 original size:12 final size:12
Alignment explanation
Indices: 58251785--58251840 Score: 87
Period size: 12 Copynumber: 4.7 Consensus size: 12
58251775 ACAAGTCAAA
58251785 AAAAAAAATTCG
1 AAAAAAAATTCG
*
58251797 AAAAAAAATTCA
1 AAAAAAAATTCG
58251809 AAAAAAAATTCG
1 AAAAAAAATTCG
58251821 AAAAAAAA-TCTG
1 AAAAAAAATTC-G
58251833 AAAAAAAA
1 AAAAAAAA
58251841 GTGTTTAATG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
11 2 0.05
12 39 0.95
ACGTcount: A:0.73, C:0.07, G:0.05, T:0.14
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:58251811 original size:24 final size:25
Alignment explanation
Indices: 58251784--58251840 Score: 98
Period size: 24 Copynumber: 2.3 Consensus size: 25
58251774 TACAAGTCAA
58251784 AAAAAAAAATTCGAAAAAAAAT-TC
1 AAAAAAAAATTCGAAAAAAAATCTC
*
58251808 AAAAAAAAATTCGAAAAAAAATCTG
1 AAAAAAAAATTCGAAAAAAAATCTC
58251833 AAAAAAAA
1 AAAAAAAA
58251841 GTGTTTAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 22 0.71
25 9 0.29
ACGTcount: A:0.74, C:0.07, G:0.05, T:0.14
Consensus pattern (25 bp):
AAAAAAAAATTCGAAAAAAAATCTC
Found at i:58252769 original size:21 final size:21
Alignment explanation
Indices: 58252739--58252788 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
58252729 ACATTCTTGT
*
58252739 AAAGAGAAAACAAAGAAAAG-A
1 AAAGAAAAAACAAA-AAAAGAA
*
58252760 AAAGAAAAAACAAAAGAAGAA
1 AAAGAAAAAACAAAAAAAGAA
58252781 AAAGAAAA
1 AAAGAAAA
58252789 TGAAATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 4 0.15
21 22 0.85
ACGTcount: A:0.80, C:0.04, G:0.16, T:0.00
Consensus pattern (21 bp):
AAAGAAAAAACAAAAAAAGAA
Found at i:58252886 original size:11 final size:12
Alignment explanation
Indices: 58252854--58252884 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
58252844 TTGAGAGAAC
58252854 TTGAAAAAGCCT
1 TTGAAAAAGCCT
58252866 TTGAAAAAGCCT
1 TTGAAAAAGCCT
58252878 TTGAAAA
1 TTGAAAA
58252885 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:58266328 original size:46 final size:46
Alignment explanation
Indices: 58266278--58266450 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
58266268 TGGTAGAGCA
*
58266278 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
58266324 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
58266369 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATACGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
58266417 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
58266451 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.56
47 28 0.27
48 4 0.04
50 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:58266434 original size:93 final size:93
Alignment explanation
Indices: 58266275--58266445 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
58266265 GGATGGTAGA
* * *
58266275 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCATTGAGT
58266340 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
58266368 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATACGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCATTGAGT
58266433 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
58266446 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:58274308 original size:19 final size:20
Alignment explanation
Indices: 58274271--58274308 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
58274261 ATTATGGTGG
58274271 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
58274291 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
58274309 GGTGGCACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:58282048 original size:47 final size:47
Alignment explanation
Indices: 58281997--58282266 Score: 425
Period size: 47 Copynumber: 5.7 Consensus size: 47
58281987 TTAGGATTCT
* * *
58281997 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
58282044 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58282091 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
58282138 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
58282185 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
58282232 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
58282267 TCCCGAAGGG
Statistics
Matches: 209, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 208 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:58282453 original size:37 final size:36
Alignment explanation
Indices: 58282384--58282532 Score: 230
Period size: 36 Copynumber: 4.1 Consensus size: 36
58282374 TCGAGCTCTA
58282384 AAGA-CCGATGACTACGTGTGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGATTTTGTCCGGGT
58282419 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGT-GGGATTTTGTCCGGGT
58282456 AAGACCCGATGACTACGTGTGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGATTTTGTCCGGGT
* * * *
58282492 AAGA-CTGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
58282528 AAGAC
1 AAGAC
58282533 TTCGTAATAA
Statistics
Matches: 106, Mismatches: 4, Indels: 6
0.91 0.03 0.05
Matches are distributed among these distances:
35 18 0.17
36 52 0.49
37 36 0.34
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (36 bp):
AAGACCCGATGACTACGTGTGGGATTTTGTCCGGGT
Found at i:58284317 original size:40 final size:40
Alignment explanation
Indices: 58284263--58284459 Score: 292
Period size: 40 Copynumber: 5.0 Consensus size: 40
58284253 ATTGAGAGTT
*
58284263 ATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
58284303 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
58284343 ATATATCCGGGCTAAGT-CCGAAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCG-AAGAGCATTCGTGCTGGTG
* *
58284383 TTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
* *
58284423 ATATATCTGGGCTAA-ACCTCGAAG-GCATTCGTGCTGG
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTGG
58284460 AATTATAAGG
Statistics
Matches: 143, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 17 0.12
40 123 0.86
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
Found at i:58284368 original size:80 final size:79
Alignment explanation
Indices: 58284263--58284459 Score: 324
Period size: 80 Copynumber: 2.5 Consensus size: 79
58284253 ATTGAGAGTT
*
58284263 ATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGT-CCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
58284328 GCATTCGTGCTAGTG
65 GCATTCGTGCTAGTG
58284343 ATATATCCGGGCTAAGTCCGAAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
1 ATATATCCGGGCTAAGTCCG-AAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
58284408 GCATTCGTGCTAGTG
65 GCATTCGTGCTAGTG
* **
58284423 ATATATCTGGGCTAAACCTCGAAG-GCATTCGTGCTGG
1 ATATATCCGGGCTAAGTC-CGAAGAGCATTCGTGCTGG
58284460 AATTATAAGG
Statistics
Matches: 111, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
79 16 0.14
80 93 0.84
81 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATATCCGGGCTAAGTCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGAG
CATTCGTGCTAGTG
Found at i:58284532 original size:29 final size:28
Alignment explanation
Indices: 58284497--58284682 Score: 171
Period size: 29 Copynumber: 6.5 Consensus size: 28
58284487 CTTCAACCGA
* *
58284497 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
58284526 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
* *
58284554 GCACTATGTGTGCGAGATTGGTAGTTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
58284583 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
*
58284611 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
* * *
58284640 GCACTATGTGTGCGAGTTCTTTAATCGA-
1 GCACTATGTGTGCGAGATC-GTAATTGAG
58284668 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
58284683 AATCAGTCAG
Statistics
Matches: 127, Mismatches: 23, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
28 60 0.47
29 67 0.53
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:58284555 original size:57 final size:57
Alignment explanation
Indices: 58284467--58284710 Score: 339
Period size: 57 Copynumber: 4.3 Consensus size: 57
58284457 TGGAATTATA
* * * * *
58284467 AGGCACTGTGTGTGCAAGCTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGTTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
**
58284524 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAGTTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
** *
58284581 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAATTG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
* *
58284638 AGGCACTATGTGTGCGAGTTCTTTAATCGAGCACTATGTGTGCGAAATCAGTCAG-TG
1 AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGTTG
* *
58284695 -GGCACTGTGTATGCGA
1 AGGCACTATGTGTGCGA
58284711 AGTGTGTTTC
Statistics
Matches: 171, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
56 14 0.08
57 156 0.91
58 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (57 bp):
AGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGTTG
Found at i:58284566 original size:28 final size:27
Alignment explanation
Indices: 58284469--58284682 Score: 194
Period size: 28 Copynumber: 7.6 Consensus size: 27
58284459 GAATTATAAG
* * * *
58284469 GCACTGTGTGTGCAAGCTCTTCAACCGA
1 GCACTATGTGTGCGAGTTCTT-AATCGA
* * * * *
58284497 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTC-TTAATCGA
58284525 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
** * *
58284554 GCACTATGTGTGCGAGATTGGTAGTTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
58284582 GGCACTATGTGTGCGAGTTCTTCAATCGA
1 -GCACTATGTGTGCGAGTTCTT-AATCGA
** *
58284611 GCACTATGTGTGCGAGATTGGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTAATCGA
58284639 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTC-TTAATCGA
58284668 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
58284683 AATCAGTCAG
Statistics
Matches: 151, Mismatches: 26, Indels: 18
0.77 0.13 0.09
Matches are distributed among these distances:
28 81 0.54
29 70 0.46
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTATGTGTGCGAGTTCTTAATCGA
Found at i:58284699 original size:28 final size:27
Alignment explanation
Indices: 58284497--58284710 Score: 119
Period size: 28 Copynumber: 7.6 Consensus size: 27
58284487 CTTCAACCGA
* *
58284497 GCACTATGTGTGCCAGATCAGT-AGTTGAG
1 GCACTATGTGTGCGAGATC-GTCA-ATG-G
* * *
58284526 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGATCGTCAAT-GG
* *
58284554 GCACTATGTGTGCGAGATTGGT-AGTTGAG
1 GCACTATGTGTGCGAGA-TCGTCA-ATG-G
* * *
58284583 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGATCGTCAAT-GG
*
58284611 GCACTATGTGTGCGAGATTGGT-AATTGAG
1 GCACTATGTGTGCGAGA-TCGTCAA-TG-G
* * * *
58284640 GCACTATGTGTGCGAGTTCTTTAATCGA
1 GCACTATGTGTGCGAGATCGTCAAT-GG
* *
58284668 GCACTATGTGTGCGAAATCAGTCAGTGG
1 GCACTATGTGTGCGAGATC-GTCAATGG
* *
58284696 GCACTGTGTATGCGA
1 GCACTATGTGTGCGA
58284711 AGTGTGTTTC
Statistics
Matches: 141, Mismatches: 31, Indels: 27
0.71 0.16 0.14
Matches are distributed among these distances:
28 76 0.54
29 65 0.46
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (27 bp):
GCACTATGTGTGCGAGATCGTCAATGG
Found at i:58285734 original size:20 final size:22
Alignment explanation
Indices: 58285687--58285734 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
58285677 CTATTGTGAA
*
58285687 AGTTGGATGGTCTAATTTAGTT
1 AGTTGGATGGTCTAAATTAGTT
* *
58285709 AATTGGAT-G-CTAAATTATTT
1 AGTTGGATGGTCTAAATTAGTT
58285729 AGTTGG
1 AGTTGG
58285735 GATTTGATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 14 0.64
21 1 0.05
22 7 0.32
ACGTcount: A:0.27, C:0.04, G:0.25, T:0.44
Consensus pattern (22 bp):
AGTTGGATGGTCTAAATTAGTT
Found at i:58293763 original size:27 final size:27
Alignment explanation
Indices: 58293733--58294019 Score: 360
Period size: 27 Copynumber: 10.6 Consensus size: 27
58293723 TTAGTTTACC
58293733 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
58293760 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
58293787 AAATCACCAAAATACCCCTGG-TTGATA
1 AAATTACCAAAATACCCCTGGTTTG-TA
* **
58293814 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
58293841 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
58293868 AAATTACAAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
58293895 AAATTACCAAAATACATCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
58293922 AAATTACCAAAATACCCCTTGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
58293949 AAATTATCAAAATACCTCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
58293976 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
58294003 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
58294020 TCGACCTGTA
Statistics
Matches: 222, Mismatches: 36, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
26 2 0.01
27 218 0.98
28 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:58294030 original size:81 final size:79
Alignment explanation
Indices: 58293733--58294073 Score: 337
Period size: 81 Copynumber: 4.2 Consensus size: 79
58293723 TTAGTTTACC
* * * * *
58293733 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGGTTTGTAAAATTATCAAA
*
58293798 ATACCCCTGGTTGATA
66 ATA-CCCTGTTTG-TA
* **
58293814 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CTGGTTTGTAAAATTA-CAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTC-GGTTTGTAAAATTATC-A
*
58293877 AAATACCCTTTGTTTATA
64 AAATACCC--TGTTTGTA
** *
58293895 AAATTACCAAAATACATCTGGTTTGTAAAATTACCAAAATACCC-CTTGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTC-GGTTTGTAAAATTATCAA
58293959 AATACCTCTAGTTTGTA
65 AATACC-CT-GTTTGTA
** * ** *** **
58293976 AAATTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGGTTTGTAAAATTATCAAA
*
58294041 ATACCCTCGACTTGTA
66 ATACCCT-G-TTTGTA
*
58294057 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
58294074 TTGATTTACA
Statistics
Matches: 219, Mismatches: 32, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
80 8 0.04
81 204 0.93
82 7 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (79 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTCGGTTTGTAAAATTATCAAA
ATACCCTGTTTGTA
Found at i:58294072 original size:27 final size:27
Alignment explanation
Indices: 58293733--58294074 Score: 295
Period size: 27 Copynumber: 12.7 Consensus size: 27
58293723 TTAGTTTACC
58293733 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* * *
58293760 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
58293787 AAATCACCAAAATACCC-CTGG-TTGATA
1 AAATTACCAAAATACCCTC-GGTTTG-TA
* **
58293814 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGGTTTGTA
58293841 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* ** *
58293868 AAATTACAAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
58293895 AAATTACCAAAATA-CATCTGGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
*
58293922 AAATTACCAAAATACCC-CTTGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
* *
58293949 AAATTATCAAAATA-CCTCTAGTTTGTA
1 AAATTACCAAAATACCCTC-GGTTTGTA
** *
58293976 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCAAAATACCCTC-GGTTTGTA
** ***
58294003 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*** **
58294030 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGGTTTGTA
*
58294057 AAATTACCAAAGTACCCT
1 AAATTACCAAAATACCCT
58294075 TGATTTACAG
Statistics
Matches: 261, Mismatches: 42, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.02
27 249 0.95
28 6 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGGTTTGTA
Found at i:58294088 original size:27 final size:26
Alignment explanation
Indices: 58293727--58294130 Score: 134
Period size: 27 Copynumber: 15.0 Consensus size: 26
58293717 AATACTTTAG
* * *
58293727 TTTACCAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** * *
58293754 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTACAAAATTAC-CAAATACCCTTGA
* * * *
58293781 TTTATAAAATCACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
* * *
58293808 TTGATAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACC-AAATACCCTTGA
* *
58293835 TTTACAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** *
58293862 TTTGTAAAATTACAAAAATACCCTTTG-
1 TTTACAAAATTAC-CAAATACCC-TTGA
* * *
58293889 TTTATAAAATTACCAAAATA-CATCTGG
1 TTTACAAAATTACC-AAATACCCT-TGA
**
58293916 TTTGTAAAATTACCAAAATACCCCTTG-
1 TTTACAAAATTACC-AAATA-CCCTTGA
** * *
58293943 TTTGTAAAATTATCAAAATACCTCTAG-
1 TTTACAAAATTA-CCAAATACC-CTTGA
** * *
58293970 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTACAAAATTACC-AAATACCCTTGA
*** * *
58293997 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTACAAAATTAC-CAAATACCCTTGA
** ** ** *
58294024 CCTGTAAAATTATTGAAATACCCTCGA
1 TTTACAAAATTA-CCAAATACCCTTGA
* **
58294051 CTTGTAAAATTACCAAAGTACCCTTGA
1 TTTACAAAATTACCAAA-TACCCTTGA
* ***
58294078 TTTACAGAATTACCGTTTTA-CCTTCGA
1 TTTACAAAATTACC-AAATACCCTT-GA
58294105 TTTACAAAATTACCGAAATACCCTTG
1 TTTACAAAATTACC-AAATACCCTTG
58294131 TAGGGTAGAA
Statistics
Matches: 304, Mismatches: 54, Indels: 38
0.77 0.14 0.10
Matches are distributed among these distances:
25 1 0.00
26 14 0.05
27 278 0.91
28 9 0.03
29 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (26 bp):
TTTACAAAATTACCAAATACCCTTGA
Found at i:58294148 original size:27 final size:27
Alignment explanation
Indices: 58294112--58294315 Score: 282
Period size: 27 Copynumber: 7.6 Consensus size: 27
58294102 CGATTTACAA
*
58294112 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
58294139 AAATATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
58294166 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
58294193 AATTATCGCAATACCCCTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
*
58294220 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
58294247 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * * *
58294274 AATTACTAAAATATCCCTGCAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
58294301 AATTACCGAGATACC
1 AATTACCGAAATACC
58294316 TTTTATGGGG
Statistics
Matches: 153, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:58294736 original size:22 final size:22
Alignment explanation
Indices: 58294684--58294748 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
58294674 TTAAAGCCTT
* *
58294684 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
58294706 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
58294728 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
58294749 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:58294937 original size:27 final size:27
Alignment explanation
Indices: 58294907--58295007 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
58294897 ATTCTGTTAA
* *
58294907 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
58294934 GTGGCT-AGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
58294960 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
58294987 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
58295008 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
26 24 0.37
27 41 0.63
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:58295182 original size:6 final size:6
Alignment explanation
Indices: 58295167--58295263 Score: 74
Period size: 6 Copynumber: 15.8 Consensus size: 6
58295157 ATTCTGTTAC
* * *
58295167 CTGATA CTGATT CTGATT TTGATT CT-ATT ACCTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT
* * *
58295216 CTGATT CTG-TCAC CTAATT TTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
58295264 AATGTTTATT
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
5 5 0.07
6 59 0.82
7 5 0.07
8 3 0.04
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:58295198 original size:31 final size:31
Alignment explanation
Indices: 58295157--58295255 Score: 135
Period size: 31 Copynumber: 3.2 Consensus size: 31
58295147 CTGATTTTTT
* *
58295157 ATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTATTACCTGATACTGATTCTGATTCTG
58295188 ATTCTATTACCTGATACTGATTCTGATTCTG
1 ATTCTATTACCTGATACTGATTCTGATTCTG
* * * **
58295219 ATTCTGTCACCTAATTTTGATTCTGATTCTG
1 ATTCTATTACCTGATACTGATTCTGATTCTG
58295250 ATTCTA
1 ATTCTA
58295256 GTTCTGATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 60 1.00
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (31 bp):
ATTCTATTACCTGATACTGATTCTGATTCTG
Found at i:58297768 original size:47 final size:49
Alignment explanation
Indices: 58297655--58297831 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 49
58297645 TGTAACCCGC
* *
58297655 CCATAAGCGAACTCGGACTCAACTC-ACGAGCTC-G--G-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
*
58297699 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACAT
*
58297749 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
* *
58297792 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
58297832 TCAACCATCC
Statistics
Matches: 111, Mismatches: 8, Indels: 23
0.78 0.06 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 26 0.23
45 9 0.08
46 29 0.26
47 29 0.26
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (49 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACAT
Found at i:58297819 original size:93 final size:91
Alignment explanation
Indices: 58297662--58297831 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 91
58297652 CGCCCATAAG
*
58297662 CGAACTCGGACTCAACTCACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 CGAACTCGGACTCAACTCACGAGCTCGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
58297727 GAGTTCGGATGCCTAGTTACATCTCA
66 GAGTTCGGATGCCTAGTTACATCTCA
*
58297753 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTC-ACGAGCTCGG-CATTCACATCCATAAGTGAACTCGGACTCAACTCA
*
58297818 ACGAGTTTGGATGC
64 ACGAGTTCGGATGC
58297832 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 18 0.24
92 9 0.12
93 47 0.64
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (91 bp):
CGAACTCGGACTCAACTCACGAGCTCGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCA
Found at i:58300071 original size:37 final size:37
Alignment explanation
Indices: 58300010--58300088 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
58300000 TTATTACGAA
* * *
58300010 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
58300047 GTCTTACCCAGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
58300084 GTCTT
1 GTCTT
58300089 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:58300285 original size:47 final size:47
Alignment explanation
Indices: 58300207--58300934 Score: 1213
Period size: 47 Copynumber: 15.4 Consensus size: 47
58300197 CCCTTCGGGA
* * * * * * *
58300207 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
58300254 CCTGTCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58300301 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58300348 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58300395 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58300442 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58300491 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58300538 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58300585 CTTATCACACATATACACTTTCACATTCATCACATCGCCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58300632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58300679 CTTATCACATATATACACTTTCACATTCATTACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58300726 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
58300773 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
58300820 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58300867 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
58300916 CTTATCACATATATACACT
1 CTTATCACATATATACACT
58300935 GTCTTGGCTG
Statistics
Matches: 648, Mismatches: 29, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
47 555 0.86
49 93 0.14
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:58307802 original size:28 final size:28
Alignment explanation
Indices: 58307692--58307806 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 28
58307682 GTGAGCATGA
* *
58307692 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
* *
58307720 ATATAAATGTGATTTGGGCCTAATGGGCA
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
*
58307749 ATAT-ACATGTGGTTTGGGCCTAATGGGCC
1 ATATGA-ATGT-GATTGGGCCTAATGGGCC
* *
58307778 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
58307806 A
1 A
58307807 GATACAGGTA
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 29 0.39
29 43 0.58
30 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:58312295 original size:27 final size:28
Alignment explanation
Indices: 58312233--58312309 Score: 95
Period size: 27 Copynumber: 2.8 Consensus size: 28
58312223 ATACTTTAGT
* *
58312233 TTAGCAAAATTAACAAAATA-CCCTCGA
1 TTAGCAAAATTACCAAAATACCCCTCAA
58312260 TTAGCAAAATTACCAAAATACCCCT-AA
1 TTAGCAAAATTACCAAAATACCCCTCAA
* * *
58312287 TTTGTAAAATTACTAAAATACCC
1 TTAGCAAAATTACCAAAATACCC
58312310 ATGTACGGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 40 0.91
28 4 0.09
ACGTcount: A:0.47, C:0.22, G:0.05, T:0.26
Consensus pattern (28 bp):
TTAGCAAAATTACCAAAATACCCCTCAA
Found at i:58312403 original size:54 final size:54
Alignment explanation
Indices: 58312294--58312417 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
58312284 TAATTTGTAA
* * *
58312294 AATTACTAAAATACCCATGTACGGTAGAATTACTGAAATACCCCTGTACGATAG
1 AATTACCAAAATACCCATGTACGGTAGAAATACTGAAATACCCCTATACGATAG
* * *
58312348 AATTACCAAAATACCTC-TGTA-GGATAGAAATACTGAAATACCCTTATAGGGTAG
1 AATTACCAAAATACC-CATGTACGG-TAGAAATACTGAAATACCCCTATACGATAG
* *
58312402 AATTACCGAGATACCC
1 AATTACCAAAATACCC
58312418 TTGTGGGGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
53 3 0.05
54 56 0.93
55 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (54 bp):
AATTACCAAAATACCCATGTACGGTAGAAATACTGAAATACCCCTATACGATAG
Found at i:58312426 original size:27 final size:27
Alignment explanation
Indices: 58312302--58312432 Score: 120
Period size: 27 Copynumber: 4.9 Consensus size: 27
58312292 AAAATTACTA
* * *
58312302 AAATACCCATGTACGGTAGAATTACTG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * * *
58312329 AAATACCCCTGTACGATAGAATTACCA
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
58312356 AAATA-CCTCTGTAGGATAGAAATACTG
1 AAATACCCT-TGTAGGGTAGAATTACCG
*
58312383 AAATACCCTTATAGGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCG
* * *
58312410 AGATACCCTTGTGGGGTAAAATT
1 AAATACCCTTGTAGGGTAGAATT
58312433 TCCATTTTGC
Statistics
Matches: 85, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.02
27 80 0.94
28 3 0.04
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTACCG
Found at i:58313209 original size:71 final size:69
Alignment explanation
Indices: 58313061--58313222 Score: 207
Period size: 71 Copynumber: 2.3 Consensus size: 69
58313051 GAGGAAGCAT
* * * * * *
58313061 TCTGGCAGCCTCGTTGCAATCTAGTGGCCTCGCCACATATATATCTGTTTTGGTGACTTCGTCAC
1 TCTGGCAGCCTCGCTGCAATTTAGTGGCCTCGCCACATATATATCTGTTCTGGTGACCTAGCCAC
58313126 AATA
66 AATA
* * * * *
58313130 TCTAGCAGCCTCGCTGCAATTTGGTGGCTTTGCCACATATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATTTAGTGGCCTCGCCAC--ATATATATCTGTTCTGGTGACCTAGCC
58313195 ACAATA
64 ACAATA
58313201 TCTGGCAGCCTCGCTGCAATTT
1 TCTGGCAGCCTCGCTGCAATTT
58313223 CTTTGGTGTG
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
69 30 0.38
71 49 0.62
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.33
Consensus pattern (69 bp):
TCTGGCAGCCTCGCTGCAATTTAGTGGCCTCGCCACATATATATCTGTTCTGGTGACCTAGCCAC
AATA
Found at i:58314800 original size:40 final size:40
Alignment explanation
Indices: 58314698--58314952 Score: 353
Period size: 40 Copynumber: 6.5 Consensus size: 40
58314688 AAACCAAGTA
* * * *
58314698 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
58314737 CCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58314776 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58314816 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58314856 CCTTC-GGACTTAGCCCGGTATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
* *
58314896 CCTTC-GG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
58314934 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58314953 TTATCATCCG
Statistics
Matches: 197, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
37 1 0.01
38 28 0.14
39 55 0.28
40 113 0.57
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58314930 original size:118 final size:119
Alignment explanation
Indices: 58314731--58314956 Score: 386
Period size: 118 Copynumber: 1.9 Consensus size: 119
58314721 GCTACTTGCT
58314731 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
58314796 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
66 TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
58314850 CAAATGCCTTCGGACTTAGCCCGGTATATAGTAACTCGTACAAATGCCTTC-GG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGGT-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
58314913 A-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
65 ATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
58314957 CATCCGAATA
Statistics
Matches: 102, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
117 1 0.01
118 50 0.49
119 27 0.26
120 24 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:58322491 original size:40 final size:40
Alignment explanation
Indices: 58322378--58322629 Score: 370
Period size: 40 Copynumber: 6.4 Consensus size: 40
58322368 AAACCAAGTA
* * * *
58322378 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
58322417 CCTTCGGGACTTAGCCC-GTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58322456 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
58322496 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
58322536 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
58322576 CCTTCGGG-CTTAGCCCAGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
58322615 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
58322630 TCGGTTATCA
Statistics
Matches: 197, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
38 2 0.01
39 80 0.41
40 115 0.58
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:58322508 original size:79 final size:80
Alignment explanation
Indices: 58322378--58322629 Score: 379
Period size: 79 Copynumber: 3.2 Consensus size: 80
58322368 AAACCAAGTA
* * * *
58322378 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCC-GTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCAGTTATA
58322440 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
*
58322456 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGTTATAG
58322521 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
58322536 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAG-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGTTA-TA
* *
58322599 GTCACTAGCACAAATG
65 GTAACTCGCACAAATG
58322615 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
58322630 TCGGTTATCA
Statistics
Matches: 162, Mismatches: 8, Indels: 7
0.92 0.05 0.04
Matches are distributed among these distances:
78 14 0.09
79 78 0.48
80 70 0.43
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGTTATAG
TAACTCGCACAAATG
Found at i:58322588 original size:119 final size:119
Alignment explanation
Indices: 58322411--58322637 Score: 377
Period size: 119 Copynumber: 1.9 Consensus size: 119
58322401 GCTACTTGCT
* *
58322411 CAAATGCCTTCGGGACTTAGCCCGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GG
1 CAAATGCCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA
*
58322475 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
66 AT-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
58322530 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCAG
1 CAAATGCCTTCGGGACTTAGCCC-GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAG
* *
58322594 AATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCTCGGTTAT
65 AATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
58322638 CATCCGAATA
Statistics
Matches: 101, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
119 69 0.68
120 32 0.32
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGA
ATTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:58324050 original size:29 final size:29
Alignment explanation
Indices: 58324017--58324073 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
58324007 ACATGTTTAT
58324017 GACATGTTTTACCCATCACATTTTGTCCG
1 GACATGTTTTACCCATCACATTTTGTCCG
58324046 GACATGTTTTACCCATCACATTTTGTCC
1 GACATGTTTTACCCATCACATTTTGTCC
58324074 ACCTTCATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.21, C:0.28, G:0.12, T:0.39
Consensus pattern (29 bp):
GACATGTTTTACCCATCACATTTTGTCCG
Found at i:58327504 original size:43 final size:43
Alignment explanation
Indices: 58327452--58327663 Score: 207
Period size: 43 Copynumber: 5.0 Consensus size: 43
58327442 GTTATCGAGA
*
58327452 TGTGATTACATGTAAGACCATGTCTGGAACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
58327495 TGTGGTTACATGTAAGACCATGTCTGGGACATTAGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * * *
58327538 TGCGATTACGTGTAAGACTATGTCTGGGACATTGTCATGGT-T
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * * * *
58327580 ATAT-ATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
* * * * *
58327622 ATGTGATAACATGTAAAACCATATCTTGGATA-TGGCATTGTA
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
58327664 CGAGCTTTAT
Statistics
Matches: 137, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
42 42 0.31
43 95 0.69
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.34
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:58331374 original size:43 final size:43
Alignment explanation
Indices: 58331326--58331416 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
58331316 TATTTCATAT
*
58331326 ACGATGCCAATAACCCAG-CTATGGTCTTACACGAAATCAAATA
1 ACGATGCCAATAACCCAGAC-ATAGTCTTACACGAAATCAAATA
** * *
58331369 ACGATGCCAATGTCCCAGACATAGTCTTACACGTAATCACATA
1 ACGATGCCAATAACCCAGACATAGTCTTACACGAAATCAAATA
58331412 ACGAT
1 ACGAT
58331417 AATCCTAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 41 0.98
44 1 0.02
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.22
Consensus pattern (43 bp):
ACGATGCCAATAACCCAGACATAGTCTTACACGAAATCAAATA
Found at i:58337592 original size:27 final size:27
Alignment explanation
Indices: 58337561--58337737 Score: 203
Period size: 27 Copynumber: 6.6 Consensus size: 27
58337551 TAAATTGTAC
*
58337561 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
58337588 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
58337614 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
58337642 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
58337669 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
58337696 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
58337723 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58337738 GACTAATATA
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
27 128 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:58337622 original size:54 final size:55
Alignment explanation
Indices: 58337561--58337737 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 55
58337551 TAAATTGTAC
* **
58337561 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * ** *
58337616 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * *
58337669 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
58337723 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58337738 GACTAATATA
Statistics
Matches: 105, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 104 0.99
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:58337701 original size:81 final size:81
Alignment explanation
Indices: 58337562--58337716 Score: 231
Period size: 81 Copynumber: 1.9 Consensus size: 81
58337552 AAATTGTACA
* * *
58337562 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
58337627 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
58337643 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGTG
*
58337707 TGCGAGTTGA
65 TGCGAATTGA
58337717 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:58337728 original size:81 final size:81
Alignment explanation
Indices: 58337558--58337737 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 81
58337548 GATTAAATTG
* * *
58337558 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
58337623 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
58337639 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTA
* **
58337703 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
58337720 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
58337738 GACTAATATA
Statistics
Matches: 83, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 82 0.99
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:58345444 original size:27 final size:27
Alignment explanation
Indices: 58345413--58345590 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
58345403 TAAATTGTAC
*
58345413 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
58345440 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
58345466 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
58345494 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
58345521 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
58345549 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
58345576 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58345591 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:58345474 original size:54 final size:55
Alignment explanation
Indices: 58345413--58345590 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
58345403 TAAATTGTAC
* **
58345413 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
58345468 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
58345521 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
58345576 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
58345591 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:58353399 original size:43 final size:43
Alignment explanation
Indices: 58353338--58353449 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 43
58353328 TTCGAGCCTC
* * * * **
58353338 GGCCTAGCAAGCTTTAATGCCGGTGAGATAATATCGGGCTTTG
1 GGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCTTCA
*
58353381 GGCCTAGCAGGCTATAATGCCGGTGAAATGATATCAGGCTTCA
1 GGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCTTCA
* *
58353424 AGCCTAGCAGGCGA-AATGCCGGTGAA
1 GGCCTAGCAGGCTATAATGCCGGTGAA
58353450 TGAGTTCAGA
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 12 0.20
43 48 0.80
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
GGCCTAGCAGGCTATAATGCCGGTGAAATAATATCAGGCTTCA
Found at i:58353472 original size:41 final size:43
Alignment explanation
Indices: 58353382--58353476 Score: 115
Period size: 41 Copynumber: 2.3 Consensus size: 43
58353372 CGGGCTTTGG
* * * *
58353382 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCAGGCTTCAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACCTAAA
58353425 GCCTAGCAGGCGA-AATGCCGGTG-AATGAGT-TCAGACCTAAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGA-TATCAGACCTAAA
*
58353466 GTCTAGCAGGC
1 GCCTAGCAGGC
58353477 TTCGTTCCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 23 0.50
42 11 0.24
43 12 0.26
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.20
Consensus pattern (43 bp):
GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACCTAAA
Found at i:58368020 original size:49 final size:48
Alignment explanation
Indices: 58367894--58368037 Score: 189
Period size: 49 Copynumber: 2.9 Consensus size: 48
58367884 TCTATTGTGA
* * *
58367894 GGTCGCATGTGTAGTACTAAGTGCAAGCTACTATGCATACCCGAAAACTGT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGACTGT
* * * *
58367945 GATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-T
58367994 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
58368038 TAGCTTCAGC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
48 5 0.06
49 41 0.51
50 2 0.02
51 33 0.41
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (48 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGT
Found at i:58371060 original size:15 final size:15
Alignment explanation
Indices: 58371040--58371104 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
58371030 GTATCTTGGG
58371040 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
58371055 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
58371070 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
58371085 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
58371099 TTTCTT
1 TTTCTT
58371105 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:58371072 original size:30 final size:31
Alignment explanation
Indices: 58371036--58371104 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
58371026 TATCGTATCT
58371036 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
58371066 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
58371096 -GGTTTTCTT
1 TGGGTTTCTT
58371105 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:58372412 original size:13 final size:13
Alignment explanation
Indices: 58372394--58372431 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
58372384 AGTTTGGCAA
58372394 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
58372407 TGCTTTTGAGAAT
1 TGCTTTTGAAAAG
58372420 TGCTTTTGAAAA
1 TGCTTTTGAAAA
58372432 ATTTGGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:58374028 original size:49 final size:48
Alignment explanation
Indices: 58373895--58374041 Score: 195
Period size: 49 Copynumber: 3.0 Consensus size: 48
58373885 TGATCTATTG
*
58373895 TGTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAAC
1 TGTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGAC
* * * * *
58373946 TGTGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAC
1 TGTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAC
*
58373994 TGTTGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGA
1 TG-TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
58374042 TAGCTTCGGC
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
48 5 0.06
49 39 0.47
50 2 0.02
51 37 0.45
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (48 bp):
TGTGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAC
Found at i:58381214 original size:31 final size:31
Alignment explanation
Indices: 58381176--58381239 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
58381166 CCTTTTCATA
58381176 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
58381207 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
58381238 TT
1 TT
58381240 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:58381508 original size:23 final size:23
Alignment explanation
Indices: 58381454--58381549 Score: 147
Period size: 23 Copynumber: 4.1 Consensus size: 23
58381444 CCTAGCCTCT
* * *
58381454 TTTAATAACTGGGGAAAAAACCC
1 TTTAATAACTGGGGCATAAGCCC
58381477 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
58381501 TTTAATAACTGGGGCATAAGCCA
1 TTTAATAACTGGGGCATAAGCCC
58381524 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
58381547 TTT
1 TTT
58381550 TGCACTTCCT
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
23 47 0.70
24 20 0.30
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:58395956 original size:20 final size:20
Alignment explanation
Indices: 58395933--58396021 Score: 81
Period size: 20 Copynumber: 4.5 Consensus size: 20
58395923 TTGCACAAAT
*
58395933 GTGCCCCTATTAGCACTTCG
1 GTGCCCCTGTTAGCACTTCG
*
58395953 GTGCCCTTGTATA-CACTTCG
1 GTGCCCCTGT-TAGCACTTCG
* * ** *
58395973 GTGTCCCTGTTTGCAAGTCT
1 GTGCCCCTGTTAGCACTTCG
* *
58395993 GTGCCCCTGTTCGCACTTTG
1 GTGCCCCTGTTAGCACTTCG
58396013 GTGCCCCTG
1 GTGCCCCTG
58396022 ATTGCACATG
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
19 1 0.02
20 50 0.94
21 2 0.04
ACGTcount: A:0.10, C:0.33, G:0.24, T:0.34
Consensus pattern (20 bp):
GTGCCCCTGTTAGCACTTCG
Found at i:58396010 original size:40 final size:40
Alignment explanation
Indices: 58395966--58396044 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
58395956 CCCTTGTATA
* * *
58395966 CACTTCGGTGTCCCTGTTTGCA-AGTCTGTGCCCCTGTTCG
1 CACTTCGGTGCCCCTGATTGCACA-TCTGTGCCCATGTTCG
* *
58396006 CACTTTGGTGCCCCTGATTGCACATGTGTGCCCATGTTC
1 CACTTCGGTGCCCCTGATTGCACATCTGTGCCCATGTTC
58396045 TGCATCTACG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 32 0.97
41 1 0.03
ACGTcount: A:0.10, C:0.32, G:0.24, T:0.34
Consensus pattern (40 bp):
CACTTCGGTGCCCCTGATTGCACATCTGTGCCCATGTTCG
Found at i:58396036 original size:20 final size:19
Alignment explanation
Indices: 58395992--58396044 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
58395982 TTTGCAAGTC
*
58395992 TGTGCCCCTGTTCGCACTT
1 TGTGCCCCTGTTCGCACTG
58396011 TGGTGCCCCTGATT-GCACATG
1 T-GTGCCCCTG-TTCGCAC-TG
*
58396032 TGTGCCCATGTTC
1 TGTGCCCCTGTTC
58396045 TGCATCTACG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
19 3 0.11
20 21 0.75
21 4 0.14
ACGTcount: A:0.09, C:0.32, G:0.25, T:0.34
Consensus pattern (19 bp):
TGTGCCCCTGTTCGCACTG
Found at i:58397085 original size:72 final size:72
Alignment explanation
Indices: 58396968--58397114 Score: 285
Period size: 72 Copynumber: 2.0 Consensus size: 72
58396958 TTTTATTTTG
*
58396968 GTGATTGGTTTGTTTTTTTGAATAGTGGCAAGTTCATTTTTGTTTATCTTTTGATGAAGACTTGT
1 GTGATTGGTTTGTTTTTTTGAATAGTGCCAAGTTCATTTTTGTTTATCTTTTGATGAAGACTTGT
58397033 AACTGAT
66 AACTGAT
58397040 GTGATTGGTTTGTTTTTTTGAATAGTGCCAAGTTCATTTTTGTTTATCTTTTGATGAAGACTTGT
1 GTGATTGGTTTGTTTTTTTGAATAGTGCCAAGTTCATTTTTGTTTATCTTTTGATGAAGACTTGT
58397105 AACTGAT
66 AACTGAT
58397112 GTG
1 GTG
58397115 TATTCATATG
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.20, C:0.07, G:0.22, T:0.50
Consensus pattern (72 bp):
GTGATTGGTTTGTTTTTTTGAATAGTGCCAAGTTCATTTTTGTTTATCTTTTGATGAAGACTTGT
AACTGAT
Found at i:58401716 original size:138 final size:137
Alignment explanation
Indices: 58401468--58401750 Score: 424
Period size: 138 Copynumber: 2.1 Consensus size: 137
58401458 TAGAAAAAGG
* * * * *
58401468 AATTATATTCTTTTCCAAAAAATATTAATTTTCATGTCTTTTATATTTTGGCCGATATTAATTAA
1 AATTATATTCTTTTCCAAAAAATATCAATTTCCATGTCTTTTATACTTTGACCGAAATTAATTAA
*
58401533 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTATTTATATTAATAAATTCGATAAAATATATACAATTAATA-TTTGTATGAATCAAATT
58401598 CATATATT
130 CATATATT
*
58401606 AATTATATTC-TTTCCAAAAGAATATCAATTTCCATGTCTTTTATACTTTGATCGAAATTAATTA
1 AATTATATTCTTTTCCAAAA-AATATCAATTTCCATGTCTTTTATACTTTGACCGAAATTAATTA
* * * * *
58401670 ATATAATTGTTTATATTAATAAATTTGATAGAATATATACAATTAATATTTGTATGAATTAAATT
65 ATATAACTATTTATATTAATAAATTCGATAAAATATATACAATTAATATTTGTATGAATCAAATT
*
58401735 CGTATATT
130 CATATATT
58401743 AATTATAT
1 AATTATAT
58401751 CTATGTTCTA
Statistics
Matches: 131, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
137 40 0.31
138 91 0.69
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (137 bp):
AATTATATTCTTTTCCAAAAAATATCAATTTCCATGTCTTTTATACTTTGACCGAAATTAATTAA
TATAACTATTTATATTAATAAATTCGATAAAATATATACAATTAATATTTGTATGAATCAAATTC
ATATATT
Found at i:58416333 original size:16 final size:16
Alignment explanation
Indices: 58416312--58416344 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
58416302 TAGTTGTGAC
58416312 AATCAAACACCAATTT
1 AATCAAACACCAATTT
58416328 AATCAAACACCAATTT
1 AATCAAACACCAATTT
58416344 A
1 A
58416345 TTATAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (16 bp):
AATCAAACACCAATTT
Found at i:58422148 original size:30 final size:30
Alignment explanation
Indices: 58422114--58422174 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58422104 TCCTTAACTC
58422114 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
58422144 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
58422174 A
1 A
58422175 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:58425775 original size:63 final size:66
Alignment explanation
Indices: 58425596--58425777 Score: 191
Period size: 63 Copynumber: 2.8 Consensus size: 66
58425586 ATATAGTTCG
* * * *
58425596 GCTCTCTTGTAC-ACATGGTG-A--ACACTCAGTACCACCCATGTGACCTAGCCA-ATTTATCTC
1 GCTCTCTTGT-CTACATGGTGTACTACACT-AGTACCACCCATGCGACCTAGCTACATATATCCC
58425656 GTA
64 GTA
* * * * *
58425659 GCTCTCTTGTCTACATGGTGTCCTTCACTGGAACCACGCATGCGACCTAGCTACATATATCCCGT
1 GCTCTCTTGTCTACATGGTGTACTACACTAGTACCACCCATGCGACCTAGCTACATATATCCCGT
58425724 A
66 A
* *
58425725 GCTCTCTTGTCTGCA-GGTGTAC-ACA-TAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACTACACTAGTACCACCCATGCGACCTAGCTACAT
58425778 CATAATGTTT
Statistics
Matches: 98, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
62 1 0.01
63 42 0.43
64 2 0.02
65 25 0.26
66 28 0.29
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.29
Consensus pattern (66 bp):
GCTCTCTTGTCTACATGGTGTACTACACTAGTACCACCCATGCGACCTAGCTACATATATCCCGT
A
Found at i:58429973 original size:47 final size:46
Alignment explanation
Indices: 58429902--58430122 Score: 152
Period size: 47 Copynumber: 4.7 Consensus size: 46
58429892 GGTAAGGTGC
* * *
58429902 CGATGCCATGTCCTACACACGGTCTTACACTAGCTCATATCTCATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT-ATATCTCATGT
* * * **
58429949 CAATGCCATGTCCCAGACATGGTCTTACA-TTGAATATCATCTTGTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-CTAT-ATCTCAT-GT
* * * *
58429997 CGATG-CATGACCCAGACAT-GTCTTACACTGGCT-TACGTCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATA--TCTC-ATGT
* *
58430043 CGATGCCATGTCCCAGACATGGTCTTACACTGGC--TATCATAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATATC-TCATGT
*
58430088 GGCTGATG-CATGTCCTAGACAT-GTCTTACACTAGC
1 --C-GATGCCATGTCCCAGACATGGTCTTACACTAGC
58430123 CCACAATAAC
Statistics
Matches: 139, Mismatches: 22, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
44 1 0.01
45 5 0.04
46 35 0.25
47 75 0.54
48 23 0.17
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTATATCTCATGT
Found at i:58435418 original size:43 final size:43
Alignment explanation
Indices: 58435360--58435531 Score: 247
Period size: 43 Copynumber: 4.0 Consensus size: 43
58435350 TATTGAAATG
*
58435360 TGATATTCAGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATA-TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
*
58435404 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* *
58435447 TAATATCGGGCCTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
** * *
58435490 TGATATCAGGGCTTCAAGCCTAGCAGGCGA-AATACCGGTGAA
1 TGATATC-GGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA
58435532 TGAGTTCAGA
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
43 93 0.80
44 23 0.20
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:58450013 original size:10 final size:10
Alignment explanation
Indices: 58449998--58450027 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
58449988 TTTAGCCATG
58449998 TGATATGGTT
1 TGATATGGTT
58450008 TGATATGGTT
1 TGATATGGTT
58450018 TGATATGGTT
1 TGATATGGTT
58450028 GTGTTTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (10 bp):
TGATATGGTT
Found at i:58451686 original size:46 final size:47
Alignment explanation
Indices: 58451551--58451767 Score: 144
Period size: 47 Copynumber: 4.6 Consensus size: 47
58451541 GTAAGGTGTC
* * * * * *
58451551 GATGCCATGTCCTAGACACGGTCTTACACTAGCTCATATCTCAT-G-T
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCT
* * *
58451597 CAATGCCATGTCCCGGACATGGTCTTACACTGAC-TATCATCTCGTAGCT
1 -GATG-CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCGTAGCT
* * *
58451646 GATGCATGTCCCAGACAT-GTCTTACATTGGCTTACGTCTCG-AGGCC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-GCT
** * * *
58451692 GATGCCATGTCGTAGACATGGTCTTACACTAGCTCT-CATAAT-GTGGCT
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGTAGCT
*
58451740 GATGCATGTCCCAAACAT-GTCTTACACT
1 GATGCATGTCCCAGACATGGTCTTACACT
58451768 AGCCCACAAT
Statistics
Matches: 134, Mismatches: 26, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
45 1 0.01
46 34 0.25
47 71 0.53
48 25 0.19
49 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAGCT
Found at i:58456592 original size:27 final size:26
Alignment explanation
Indices: 58456544--58456603 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
58456534 GTGAGGCTGC
*
58456544 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
58456571 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
58456597 CAGATAT
1 CAGATAT
58456604 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:58456616 original size:33 final size:32
Alignment explanation
Indices: 58456565--58456628 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
58456555 ACGAAGTCAC
* *
58456565 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
58456597 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
58456629 TTGCAGCGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:58456692 original size:27 final size:26
Alignment explanation
Indices: 58456644--58456695 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58456634 GCGTGGCTGC
*
58456644 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
58456670 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
58456696 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:58470936 original size:26 final size:26
Alignment explanation
Indices: 58470907--58470966 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
58470897 TCCCTTTGAA
* * *
58470907 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
58470933 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
58470961 CCATTC
1 TCATTC
58470967 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:58470952 original size:28 final size:28
Alignment explanation
Indices: 58470921--58470992 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
58470911 TCGATATTTT
*
58470921 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
58470949 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
58470977 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
58470993 ATTTGATTGC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:58476967 original size:34 final size:33
Alignment explanation
Indices: 58476919--58477022 Score: 136
Period size: 34 Copynumber: 3.0 Consensus size: 33
58476909 GCGAATACAT
* *
58476919 TCTGGGCCTAAGCCCATATCAATAACAGTAGCAG
1 TCTGGGCCTTAGCCCAT-TCAGTAACAGTAGCAG
*
58476953 TTTGGGCCTTAGCCCACTTCAGTAACAGTAGCAG
1 TCTGGGCCTTAGCCCA-TTCAGTAACAGTAGCAG
*
58476987 TCTGGGCCTTAGCCCATTTCAGTAATAGTAGTCAG
1 TCTGGGCCTTAGCCCA-TTCAGTAACAGTAG-CAG
58477022 T
1 T
58477023 GCAGTAACCA
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
34 57 0.92
35 5 0.08
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (33 bp):
TCTGGGCCTTAGCCCATTCAGTAACAGTAGCAG
Found at i:58477350 original size:23 final size:23
Alignment explanation
Indices: 58477323--58477372 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
58477313 TCCCCATACA
58477323 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
58477346 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
58477369 ATGC
1 ATGC
58477373 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:58477519 original size:27 final size:27
Alignment explanation
Indices: 58477434--58477521 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
58477424 AGGTGTTACA
* *
58477434 GTCATTTTACCGTA-CA-GGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTTG
**
58477459 GTCATTGCACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTTG
58477486 GTCATTTTACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTTG
58477513 GTCATTTTA
1 GTCATTTTA
58477522 TCACATAATG
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
25 11 0.20
26 1 0.02
27 43 0.78
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTTG
Found at i:58477544 original size:27 final size:27
Alignment explanation
Indices: 58477514--58477654 Score: 212
Period size: 27 Copynumber: 5.3 Consensus size: 27
58477504 GGTATTTTGG
*
58477514 TCATTTTATCACATAATGGCAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCA
*
58477541 TCATTTTATCACATAAGGGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCA
*
58477568 TCA-TTTATCATATAAGGGCAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCA
**
58477594 TCATTTTATCACATAAGGGCAAAATTG
1 TCATTTTATCACATAAGGGCAAAATCA
* *
58477621 TCATTTTATCACGTAAGGGTAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCA
58477648 TCATTTT
1 TCATTTT
58477655 TATCGACTAC
Statistics
Matches: 102, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
26 24 0.24
27 78 0.76
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAATCA
Found at i:58477591 original size:53 final size:54
Alignment explanation
Indices: 58477513--58477654 Score: 232
Period size: 53 Copynumber: 2.6 Consensus size: 54
58477503 GGGTATTTTG
*
58477513 GTCATTTTATCACATAATGGCAAAATCATCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGCAAAATC
* *
58477567 GTCA-TTTATCATATAAGGGCAAAATCATCATTTTATCACATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGCAAAATC
* *
58477620 GTCATTTTATCACGTAAGGGTAAAATCATCATTTT
1 GTCATTTTATCACATAAGGGCAAAATCATCATTTT
58477655 TATCGACTAC
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 50 0.62
54 31 0.38
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (54 bp):
GTCATTTTATCACATAAGGGCAAAATCATCATTTTATCACATAAGGGCAAAATC
Found at i:58485991 original size:18 final size:18
Alignment explanation
Indices: 58485947--58485982 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
58485937 AGAAAAACAA
58485947 AATTTGTCTACGTCAGAT
1 AATTTGTCTACGTCAGAT
58485965 AATTTGTCTACGTCAGAT
1 AATTTGTCTACGTCAGAT
58485983 TTGTTGTCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (18 bp):
AATTTGTCTACGTCAGAT
Found at i:58493961 original size:32 final size:32
Alignment explanation
Indices: 58493915--58494007 Score: 114
Period size: 32 Copynumber: 2.9 Consensus size: 32
58493905 CAACCCATCG
* * * *
58493915 CAGTCTCAATTGGGCCTAGCTCATCTCAAAAC
1 CAGTATCAGTTGGGCCTAGCCCATATCAAAAC
* * *
58493947 TAGTATCAGTTGGGCCTAGCCCATATTAGAAC
1 CAGTATCAGTTGGGCCTAGCCCATATCAAAAC
*
58493979 CAGTATCAGTTGGGCCTAGCCCATTTCAA
1 CAGTATCAGTTGGGCCTAGCCCATATCAA
58494008 TATCAAACCC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (32 bp):
CAGTATCAGTTGGGCCTAGCCCATATCAAAAC
Found at i:58498048 original size:30 final size:30
Alignment explanation
Indices: 58498014--58498082 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
58498004 CTAGGATAAG
58498014 CCGTGTGTCACACACGGTCTATACACATGC
1 CCGTGTGTCACACACGGTCTATACACATGC
58498044 CCGTGTGTCACACACGGTCTATACACATGC
1 CCGTGTGTCACACACGGTCTATACACATGC
58498074 CCGTGTGTC
1 CCGTGTGTC
58498083 TACCCGTGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.25
Consensus pattern (30 bp):
CCGTGTGTCACACACGGTCTATACACATGC
Found at i:58502204 original size:19 final size:21
Alignment explanation
Indices: 58502180--58502218 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
58502170 TATTTTTGTC
58502180 CACACA-GG-CATGTGTCTCT
1 CACACACGGCCATGTGTCTCT
*
58502199 CACACACGGCCGTGTGTCTC
1 CACACACGGCCATGTGTCTC
58502219 CTGTAGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 2 0.12
21 9 0.53
ACGTcount: A:0.18, C:0.36, G:0.23, T:0.23
Consensus pattern (21 bp):
CACACACGGCCATGTGTCTCT
Found at i:58505233 original size:532 final size:521
Alignment explanation
Indices: 58504222--58505269 Score: 1435
Period size: 532 Copynumber: 2.0 Consensus size: 521
58504212 TTAAGTCCAT
** * *
58504222 TGAATTCATGGTTAAAGTATCGAACCTCTAGGTCAGTATGTGTTAGTTGATAAAGTTTGTAGGAA
1 TGAATTCATGGTTAAAGTATCGAACCTCTAGGTCAGTATGTGTTACCTAATAAAGTTTGTAAGAA
* *
58504287 CTATCCTTTGATGACTCGTGGTTACAGTTTTCTGATGTTATTACTGTTTGATGAATTTGACTTGA
66 CTATCCTTTGATGACTCGGGGTTACAGTTTTCTGATGTTATTACTGTTTGATGAATTTGACATGA
* * *** * * * *
58504352 TTTTGGGCATGATTGGCTAACTCTCACAATTTTGTTGTAAGCTGTAGACGAAAGCTTATTGTATT
131 TTTTAGGCATGATTGGCTAACTATCACAACGCTATTGTAAACTGCAGACAAAAGCTTATTGTATT
* * *
58504417 GAAATGTCAGAATGGTGAGACACTTCATATTGAATCAAGTAGTGTGAGTGGGTTGCCTGTTATTA
196 GAAATGTCAGAATGGTGAGACACTT-ATATAGAATCAAGTAGTGTGAATGGGTTGCCTATTATTA
* ** *
58504482 TATTAGCTATGTCAGTGCAGAAATTTGTGAGAAAAGATTGCAATGCTTACCTTGCTTATGTATTG
260 TATCAGCTATGTCAGCACAGAAATATGTGAGAAAAGATTGCAATGCTTACCTTGCTTATGTATTG
* * *
58504547 GATACTAAAGTGTCGAATCAAAGCATGAATCAGTGTCAGTGGTTTGTGAGTATCCTGATGTATTT
325 GATACTAAAGTGTCGAATCAAAGCATGAATCAGTGCCACTAGTTTGTGAGTATCCTGATGTATTT
* * * *
58504612 CCAGAGGAGTTACCTCGATTACCACCGATCAGAGAGGTTGAGTTTGCTGTTGAACTAGTACCAGG
390 CCAGAGGAGTTACCTCGATTAACACCGATCAAAGAGGTTAAGTTTGCTATTGAACTAGTACCAGG
*
58504677 GATATCACCGATATCGATAGCACCTTACAAAATGACTCCTACTAAGTTGAAAGAGTTGAAACCCC
455 GACATCACCGATATCGATAGCACCTTACAAAATGACTCCTACTAAGTTGAAAGAGTTGAAACCCC
58504742 AC
520 AC
*
58504744 TGAATTTC-TGGTTAAAGTATCGAACCTCTAGGTCAGTATTTGTTACCTAATAAAGTTTGTAAGA
1 TGAA-TTCATGGTTAAAGTATCGAACCTCTAGGTCAGTATGTGTTACCTAATAAAGTTTGTAAGA
* * *
58504808 ACTATCCTTTGATTATTCGGGGTTACAATTTTTTGGCTGATTTGATACTATTAC-GATTTGATGA
65 ACTATCCTTTGATGACTCGGGGTTAC-A-GTTTT--CTGA--TG-T--TATTACTG-TTTGATGA
*
58504872 ATTTGACATGATTTTAGGCATAGATTGGCTAACTATACACAACGCTATTGTAAATTGCAGACAAA
120 ATTTGACATGATTTTAGGCAT-GATTGGCTAACTAT-CACAACGCTATTGTAAACTGCAGACAAA
* *
58504937 AGCTTATTGTATTGAAATGTTAGAATGGTGAGA-AGCTT-TGTAGAAT-AAGATAGTGTGAATGG
183 AGCTTATTGTATTGAAATGTCAGAATGGTGAGACA-CTTATATAGAATCAAG-TAGTGTGAATGG
* * *
58504999 GTTGCCTATTTTTATATCAGCTATGTCAGCATAGAAATATGTGAGAAAAGGTTGCAATGCTTACC
246 GTTGCCTATTATTATATCAGCTATGTCAGCACAGAAATATGTGAGAAAAGATTGCAATGCTTACC
* *
58505064 TTGCTTATGTATTGGATACTAAAGTGTCTGAATTAAAGCTTGAATCAGTGCCACTAGTTTGTGAG
311 TTGCTTATGTATTGGATACTAAAGTGTC-GAATCAAAGCATGAATCAGTGCCACTAGTTTGTGAG
* *
58505129 TATCCTGATGTATTTCCAGAGGAGTTACCTGGA-TAACAGCCTATCAAAGAGGTTAAGTTTGCTA
375 TATCCTGATGTATTTCCAGAGGAGTTACCTCGATTAACA-CCGATCAAAGAGGTTAAGTTTGCTA
* * * * *
58505193 TTGAACTAGTA-CTGAGGACATCACTGATATCGATAGCACCTTACAGAATGGCTCCTACTGAGTT
439 TTGAACTAGTACCAG-GGACATCACCGATATCGATAGCACCTTACAAAATGACTCCTACTAAGTT
58505257 GAAAGAGTTGAAA
503 GAAAGAGTTGAAA
58505270 GCACAGTTAC
Statistics
Matches: 459, Mismatches: 49, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
522 78 0.17
523 4 0.01
524 4 0.01
526 4 0.01
528 2 0.00
529 1 0.00
530 4 0.01
531 141 0.31
532 166 0.36
533 55 0.12
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (521 bp):
TGAATTCATGGTTAAAGTATCGAACCTCTAGGTCAGTATGTGTTACCTAATAAAGTTTGTAAGAA
CTATCCTTTGATGACTCGGGGTTACAGTTTTCTGATGTTATTACTGTTTGATGAATTTGACATGA
TTTTAGGCATGATTGGCTAACTATCACAACGCTATTGTAAACTGCAGACAAAAGCTTATTGTATT
GAAATGTCAGAATGGTGAGACACTTATATAGAATCAAGTAGTGTGAATGGGTTGCCTATTATTAT
ATCAGCTATGTCAGCACAGAAATATGTGAGAAAAGATTGCAATGCTTACCTTGCTTATGTATTGG
ATACTAAAGTGTCGAATCAAAGCATGAATCAGTGCCACTAGTTTGTGAGTATCCTGATGTATTTC
CAGAGGAGTTACCTCGATTAACACCGATCAAAGAGGTTAAGTTTGCTATTGAACTAGTACCAGGG
ACATCACCGATATCGATAGCACCTTACAAAATGACTCCTACTAAGTTGAAAGAGTTGAAACCCCA
C
Found at i:58509330 original size:43 final size:44
Alignment explanation
Indices: 58509269--58509417 Score: 139
Period size: 44 Copynumber: 3.5 Consensus size: 44
58509259 CAACGTGAAC
58509269 ATCCCAGACGTGGTCTTACATGTAATCACATATCGATGCC-ACT
1 ATCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCAACT
* *
58509312 ATCCCAGACAG-GGTCTTACATG-AA-CTCATATACGATGCCGA-T
1 ATCCCAGAC-GTGGTCTTACATGTAATCACATAT-CGATGCCAACT
* * * * * * *
58509354 GTCCCACACATGGTCATACACGTAAATCATAAATCGATGCCAAC-
1 ATCCCAGACGTGGTCTTACATGT-AATCACATATCGATGCCAACT
*
58509398 GTCCCAGACGTGGTCTTACA
1 ATCCCAGACGTGGTCTTACA
58509418 CGAAATTGCA
Statistics
Matches: 85, Mismatches: 13, Indels: 15
0.75 0.12 0.13
Matches are distributed among these distances:
41 6 0.07
42 26 0.31
43 21 0.25
44 28 0.33
45 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (44 bp):
ATCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCAACT
Found at i:58512989 original size:23 final size:22
Alignment explanation
Indices: 58512938--58512989 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
58512928 CCTCGTCTTT
*
58512938 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
58512960 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
58512983 TTCTTTT
1 TTCTTTT
58512990 TCAAATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:58513004 original size:18 final size:18
Alignment explanation
Indices: 58512983--58513021 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
58512973 TTTCTTCAAC
* *
58512983 TTCTTTTTCAAATTTCTT
1 TTCTGTTTCAAATTCCTT
*
58513001 TTCTGTTTCACATTCCTT
1 TTCTGTTTCAAATTCCTT
58513019 TTC
1 TTC
58513022 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.03, T:0.62
Consensus pattern (18 bp):
TTCTGTTTCAAATTCCTT
Found at i:58517030 original size:27 final size:27
Alignment explanation
Indices: 58516989--58517068 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
58516979 CTCTCATATT
* *
58516989 TGTAGGCTAGCATTACTGAAATACCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
*
58517016 TGTAGGGTAGAATTACTGAAATGCCCC
1 TGTAGGGTAGAATTACTGAAATACCCC
**
58517043 TGTAGGGTAGAATTACCAAAATACCC
1 TGTAGGGTAGAATTACTGAAATACCC
58517069 TTAGTTTGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCC
Found at i:58517083 original size:27 final size:28
Alignment explanation
Indices: 58517053--58517340 Score: 190
Period size: 27 Copynumber: 10.6 Consensus size: 28
58517043 TGTAGGGTAG
58517053 AATTACCAAAATACCCTTAG-TTTGTAA
1 AATTACCAAAATACCCTTAGATTTGTAA
* *
58517080 AATTACCAAAATACCCCT-GATTTGTGA
1 AATTACCAAAATACCCTTAGATTTGTAA
* * **
58517107 AATTACCGAAATACCC-TCGACCTGTAA
1 AATTACCAAAATACCCTTAGATTTGTAA
* * * *
58517134 AATTATCGAAATA-CCTTTGACTTGTAA
1 AATTACCAAAATACCCTTAGATTTGTAA
*
58517161 AATTACCAAAATACCC-TCGATTTGTAA
1 AATTACCAAAATACCCTTAGATTTGTAA
* * *
58517188 AGTTACC-AAATACCCCT-GATTTGGAA
1 AATTACCAAAATACCCTTAGATTTGTAA
* * *
58517214 AAGTACCGAAATACCCTTA-ATTTGGAA
1 AATTACCAAAATACCCTTAGATTTGTAA
**
58517241 AATTA-CAGAAATACCCTT-GACTTTCAAA
1 AATTACCA-AAATACCCTTAGA-TTTGTAA
* * *
58517269 AATTA-TAGAAATACCATTAG-TCTT-CAA
1 AATTACCA-AAATACCCTTAGAT-TTGTAA
** * *
58517296 AATTACTGAAATACCCTT-GGTTTGTAG
1 AATTACCAAAATACCCTTAGATTTGTAA
* *
58517323 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
58517341 GTAGGATGAA
Statistics
Matches: 213, Mismatches: 33, Indels: 30
0.77 0.12 0.11
Matches are distributed among these distances:
26 29 0.14
27 157 0.74
28 26 0.12
29 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (28 bp):
AATTACCAAAATACCCTTAGATTTGTAA
Found at i:58517138 original size:81 final size:81
Alignment explanation
Indices: 58517053--58517256 Score: 231
Period size: 81 Copynumber: 2.5 Consensus size: 81
58517043 TGTAGGGTAG
*
58517053 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCT-GATTTGTGAAA-TTACCGA
1 AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTCGATTTGT-AAAGTTACC-A
*
58517116 AATA-CCCTCGACCTGTAA
64 AATACCCCT-GACCTGGAA
* * *
58517134 AATTATCGAAATA-CCTTTGACTTGTAAAATTACCAAAATA-CCCTCGATTTGTAAAGTTACCAA
1 AATTACCGAAATACCCTTAG-TTTGTAAAATTACCAAAATACCCCTCGATTTGTAAAGTTACCAA
**
58517197 ATACCCCTGATTTGGAA
65 ATACCCCTGACCTGGAA
* * *
58517214 AAGTACCGAAATACCCTTAATTTGGAAAATTA-CAGAAATACCC
1 AATTACCGAAATACCCTTAGTTTGTAAAATTACCA-AAATACCC
58517257 TTGACTTTCA
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
79 2 0.02
80 49 0.48
81 52 0.50
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (81 bp):
AATTACCGAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTCGATTTGTAAAGTTACCAAA
TACCCCTGACCTGGAA
Found at i:58517252 original size:107 final size:108
Alignment explanation
Indices: 58517053--58517263 Score: 286
Period size: 107 Copynumber: 2.0 Consensus size: 108
58517043 TGTAGGGTAG
* *
58517053 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAA
1 AATTACCAAAATACCCTGAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAAGTACCGAAA
* * *
58517118 TACCCTCGACCTGTAAAATTATCGAAATACCTTTGACTTGTAA
66 TACCCTCAACCTGGAAAATTATCGAAATACCCTTGACTTGTAA
*
58517161 AATTACCAAAATACCCTCGA-TTTGTAAAGTTACC-AAATACCCCTGATTTG-GAAAAGTACCGA
1 AATTACCAAAATACCCT-GAGTTTGTAAAATTACCAAAATACCCCTGATTTGTG-AAAGTACCGA
* **
58517223 AATACCCTTAATTTGGAAAATTA-CAGAAATACCCTTGACTT
64 AATACCCTCAACCTGGAAAATTATC-GAAATACCCTTGACTT
58517264 TCAAAAATTA
Statistics
Matches: 91, Mismatches: 9, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
106 2 0.02
107 58 0.64
108 30 0.33
109 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.29
Consensus pattern (108 bp):
AATTACCAAAATACCCTGAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAAGTACCGAAA
TACCCTCAACCTGGAAAATTATCGAAATACCCTTGACTTGTAA
Found at i:58517411 original size:27 final size:27
Alignment explanation
Indices: 58517372--58517463 Score: 94
Period size: 27 Copynumber: 3.4 Consensus size: 27
58517362 ACTCTTAATA
** *
58517372 GGTAAAAACACCGTAATGCCCCTATAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
58517399 GGTAAAATGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
** * * * *
58517426 GGTAAAGCGATCATAATACCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
58517453 GGTAAAATGAC
1 GGTAAAATGAC
58517464 AATTATGCCC
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.21
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:58517656 original size:27 final size:27
Alignment explanation
Indices: 58517604--58517685 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
58517594 GGAAGTTCTG
* **
58517604 TACTGGTGACTATGTTAC-ATTCACTGT
1 TACTGGTGGCTATGCCACAATT-ACTGT
*
58517631 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGT
* *
58517658 TACTGGTGGCTTTGCCACATTTACTGT
1 TACTGGTGGCTATGCCACAATTACTGT
58517685 T
1 T
58517686 TCTGACAGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
27 44 0.94
28 3 0.06
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGT
Found at i:58522044 original size:119 final size:120
Alignment explanation
Indices: 58521862--58522082 Score: 288
Period size: 119 Copynumber: 1.9 Consensus size: 120
58521852 TACTCGTTCA
* *
58521862 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
58521927 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
* * **
58521982 AATGCCTTCAGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCAGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
58522044 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCG
58522083 GACATCATTC
Statistics
Matches: 87, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.05
119 64 0.74
120 19 0.22
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (120 bp):
AATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACC
Found at i:58522068 original size:79 final size:79
Alignment explanation
Indices: 58521860--58522084 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 79
58521850 GCTACTCGTT
* * ** * *
58521860 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
58521925 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * * *
58521940 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCACCAATGCCTTCAGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
58522004 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * * *
58522019 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGAATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCCG
58522083 GA
64 GA
58522085 CATCATTCGA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
78 3 0.02
79 58 0.48
80 58 0.48
81 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGAATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:58522084 original size:40 final size:40
Alignment explanation
Indices: 58521841--58522084 Score: 273
Period size: 40 Copynumber: 6.1 Consensus size: 40
58521831 CGGAATTTAA
** *
58521841 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58521881 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58521921 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
58521961 CCGAATTTAGTAACTCGCACCAATGCCTTCAGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58522000 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
58522040 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58522080 CCGGA
1 CCGGA
58522085 CATCATTCGA
Statistics
Matches: 176, Mismatches: 21, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.18
40 131 0.74
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Done.