Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 179 of 345
Found at i:60703405 original size:161 final size:162
Alignment explanation
Indices: 60703076--60703382 Score: 436
Period size: 161 Copynumber: 1.9 Consensus size: 162
60703066 CCTGGTTTGT
* * ** *
60703076 AAAATTAGCAAAATGCCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTGAAATTACCAA
1 AAAATTACCAAAATGACCCTGGTTTAAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
* * * *
60703141 AATACCCCTAATTTGTGAAATTATTGAAATACTCTCGACTTGTAAAATTACCAAAATATCCCTAA
66 AATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCCAAA
* * * **
60703206 TTTATAAAATTACTGAAATACCCCCGACTTGT
131 TTTACAAAATTACCGAAATACCCCCAACTTAC
*
60703238 AAAATTACCAAAAT-ACCTTGGTTTAAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAAATTACCAAAATGACCCTGGTTTAAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
* *
60703302 AATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAAATTACCAAAGTACCCCAA
66 AATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACTTGT-AAAATTACCAAAATACCCCAA
*
60703367 ATTTACAGAATTACCG
130 ATTTACAAAATTACCG
60703383 TTTTCCCTCA
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
161 85 0.66
162 44 0.34
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.29
Consensus pattern (162 bp):
AAAATTACCAAAATGACCCTGGTTTAAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
AATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATACCCCAAA
TTTACAAAATTACCGAAATACCCCCAACTTAC
Found at i:60703552 original size:54 final size:54
Alignment explanation
Indices: 60703401--60703568 Score: 248
Period size: 54 Copynumber: 3.1 Consensus size: 54
60703391 CAATTTACAA
* * * * *
60703401 AATTATTGAAATACCCGTGTAGGGTAGAATTATCGAAATACCCCTGTAGAGCAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAG
*
60703455 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAG
* *
60703509 AATTACTGAAATACCCTTGTAGGGTAGAATTATCGAGATACCCTTGT-GTGGTAA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCTTGTAG-GGTAG
60703563 AATTAC
1 AATTAC
60703569 CATTTTGCCC
Statistics
Matches: 104, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 1 0.01
54 103 0.99
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAG
Found at i:60703561 original size:27 final size:27
Alignment explanation
Indices: 60703401--60703555 Score: 215
Period size: 27 Copynumber: 5.7 Consensus size: 27
60703391 CAATTTACAA
* *
60703401 AATTATTGAAATACCCGTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* * *
60703428 AATTATCGAAATACCCCTGTAGAGCAG
1 AATTATCGAAATACCCTTGTAGGGTAG
60703455 AATTA-CTGAAATACCCTTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
*
60703482 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
60703509 AATTA-CTGAAATACCCTTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
*
60703536 AATTATCGAGATACCCTTGT
1 AATTATCGAAATACCCTTGT
60703556 GTGGTAAAAT
Statistics
Matches: 116, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
26 2 0.02
27 112 0.97
28 2 0.02
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (27 bp):
AATTATCGAAATACCCTTGTAGGGTAG
Found at i:60703808 original size:25 final size:25
Alignment explanation
Indices: 60703774--60703868 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
60703764 AGGAAGTGCT
*
60703774 AAAAGGGCTTTGCCCCATTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
60703799 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
60703824 AAAAGGGATTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
60703849 AAAAGGGCTTTACCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
60703869 ATTAAAAGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 64 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:60706092 original size:27 final size:27
Alignment explanation
Indices: 60706060--60706434 Score: 283
Period size: 27 Copynumber: 13.9 Consensus size: 27
60706050 TTAGTTTACC
* * *
60706060 AAATTACTAAAAT-GCCCTCAATTTCTA
1 AAATTACCAAAATACCCCT-AATTTGTA
* **
60706087 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
* **
60706114 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
* *
60706141 AAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCCTAATTTGTA
*
60706168 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAATTTGTA
* * *
60706195 AAATTACTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-AATTTGTA
* * *
60706222 AAATTACCAAAATACCCCTGACTTGTG
1 AAATTACCAAAATACCCCTAATTTGTA
** * *
60706249 AAATTACTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-AATTTGTA
* ** **
60706276 AAATTACCAAAATA-CCTTGGTTTACA
1 AAATTACCAAAATACCCCTAATTTGTA
**
60706302 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
* * *
60706329 AAATTACCAAAATACCCCTGATTTATG
1 AAATTACCAAAATACCCCTAATTTGTA
* * * *
60706356 AAATTACCGAAATACCCTTAGTTTGCA
1 AAATTACCAAAATACCCCTAATTTGTA
** * * *
60706383 AAATTACTGAAATA-CCTTCGACTTGTAA
1 AAATTACCAAAATACCCCT-AATTTGT-A
* *
60706411 AAATTACCAAAGTACCCCCAATTT
1 AAATTACCAAAATACCCCTAATTT
60706435 TGGTTTAAGG
Statistics
Matches: 289, Mismatches: 51, Indels: 15
0.81 0.14 0.04
Matches are distributed among these distances:
26 30 0.10
27 234 0.81
28 23 0.08
29 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAATTTGTA
Found at i:60706126 original size:54 final size:54
Alignment explanation
Indices: 60706060--60706428 Score: 318
Period size: 54 Copynumber: 6.8 Consensus size: 54
60706050 TTAGTTTACC
* * * *
60706060 AAATTACTAAAATGCCCTCAATTTCTAAAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTGGTTTGTA
* * * * *
60706114 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTG
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTGGTTTGTA
* * **
60706168 AAATTACCAAAATACCC-CTAATTTGTGAAATTACTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACTAAAATACCCCT-GGTTTGTA
* * * **
60706222 AAATTACCAAAATACCC-CTGACTTGTGAAATTACTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACTAAAATACCCCT-GGTTTGTA
* * ** *
60706276 AAATTACCAAAATA-CCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTGGTTTGTA
* * ** * * *
60706329 AAATTACCAAAATACCC-CTGATTTATGAAATTACCGAAATACCCTTAGTTTGCA
1 AAATTACCAAAATACCCTC-GATTTGTAAAATTACTAAAATACCCCTGGTTTGTA
** * * * *
60706383 AAATTACTGAAATACCTTCGACTTGTAAAAATTACCAAAGTACCCC
1 AAATTACCAAAATACCCTCGATTTGT-AAAATTACTAAAATACCCC
60706429 CAATTTTGGT
Statistics
Matches: 259, Mismatches: 48, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
53 41 0.16
54 202 0.78
55 16 0.06
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCGATTTGTAAAATTACTAAAATACCCCTGGTTTGTA
Found at i:60706199 original size:81 final size:80
Alignment explanation
Indices: 60706087--60706398 Score: 376
Period size: 81 Copynumber: 3.9 Consensus size: 80
60706077 TCAATTTCTA
* * *
60706087 AAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAA
60706152 ATACCCCTAGTTTGTG
66 ATACCCCT-GTTTGTG
* * * * ** *
60706168 AAATTACCAAAATACCCCTAATTTGTGAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAA
*
60706233 ATACCCCTGACTTGTG
66 ATACCCCTG-TTTGTG
** * *
60706249 AAATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAAATA-CCTTGGTTTACAAAATTACCAA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAA
*
60706312 AATACCCCTGGTTTGTA
65 AATACCCCT-GTTTGTG
* * * * **
60706329 AAATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCTTAGTTTGCAAAATTACTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAA
60706394 ATACC
66 ATACC
60706399 TTCGACTTGT
Statistics
Matches: 194, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
80 65 0.34
81 129 0.66
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAA
ATACCCCTGTTTGTG
Found at i:60707183 original size:27 final size:27
Alignment explanation
Indices: 60707153--60707463 Score: 322
Period size: 27 Copynumber: 11.6 Consensus size: 27
60707143 CAATTTCTAT
*
60707153 AATTACTAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
*
60707180 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* *
60707207 AATTACCAAAATACCCCTAGTTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
** *
60707234 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
* **
60707261 AATTACTAAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GGTTTGTAA
** *
60707288 AATTACCAAAATACCCCTGACTTGTGA
1 AATTACCAAAATACCCCTGGTTTGTAA
** **
60707315 AATTACTGAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GGTTTGTAA
* **
60707342 AATTACCAAAATA-CCTTGGTTTACAA
1 AATTACCAAAATACCCCTGGTTTGTAA
60707368 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * *
60707395 AATTACCAAAATACCCCTGATTTATGA
1 AATTACCAAAATACCCCTGGTTTGTAA
* * * *
60707422 AATTACCGAAATACCCATAGTTTGCAA
1 AATTACCAAAATACCCCTGGTTTGTAA
**
60707449 AATTACTGAAATACC
1 AATTACCAAAATACC
60707464 TTCAACTTGT
Statistics
Matches: 244, Mismatches: 36, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 26 0.11
27 214 0.88
28 4 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGGTTTGTAA
Found at i:60707264 original size:81 final size:80
Alignment explanation
Indices: 60707153--60707463 Score: 365
Period size: 81 Copynumber: 3.9 Consensus size: 80
60707143 CAATTTCTAT
* * *
60707153 AATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
60707218 TACCCCTAGTTTGTGA
66 TACCCCT-GTTTGTGA
* * * * ** *
60707234 AATTACCAAAATACCCCTAATTTGTGAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
*
60707299 TACCCCTGACTTGTGA
66 TACCCCTG-TTTGTGA
** * *
60707315 AATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAAATA-CCTTGGTTTACAAAATTACCAAA
1 AATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAA
*
60707378 ATACCCCTGGTTTGTAA
65 ATACCCCT-GTTTGTGA
* * * * * **
60707395 AATTACCAAAATACCCCTGATTTATGAAATTACCGAAATACCCATAGTTTGCAAAATTACTGAAA
1 AATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
60707460 TACC
66 TACC
60707464 TTCAACTTGT
Statistics
Matches: 192, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
80 65 0.34
81 127 0.66
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.30
Consensus pattern (80 bp):
AATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTGCAAAATTACCAAAA
TACCCCTGTTTGTGA
Found at i:60708244 original size:27 final size:27
Alignment explanation
Indices: 60708214--60708446 Score: 261
Period size: 27 Copynumber: 8.7 Consensus size: 27
60708204 CCTCAATTTC
*
60708214 TAAAATTACTAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
*
60708241 TAAAATTACCAAAATACCCCTAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* **
60708268 TGAAATTACCAAAATACCCCTAATTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* ** * **
60708295 TGAAATTACTGAAATACCCTTGACTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
60708322 TAAAATTACCAAAATA-CCTTGGTTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
*
60708348 CAAAATTACCAAAATACCCCTGGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
60708375 TAAAATTACCAAAATACCCCTGATTTA
1 TAAAATTACCAAAATACCCCTGGTTTG
* * * *
60708402 TGAAATTACCGAAATACCCTTAGTTTG
1 TAAAATTACCAAAATACCCCTGGTTTG
* *
60708429 CAAAATTACTAAAATACC
1 TAAAATTACCAAAATACC
60708447 TTCGAATTGT
Statistics
Matches: 174, Mismatches: 31, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 22 0.13
27 152 0.87
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTGGTTTG
Found at i:60708255 original size:54 final size:54
Alignment explanation
Indices: 60708189--60708493 Score: 258
Period size: 54 Copynumber: 5.6 Consensus size: 54
60708179 TTAGTTTACC
* * * * *
60708189 AAATTACTAAAATGCCCTCAATTTCTAAAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTA
* * * *
60708243 AAATTACCAAAATACCC-CTAGTTTGTGAAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATTTGTA
** ** * * * **
60708297 AAATTACTGAAATACCCTTGACTTGTAAAATTACCAAAATA-CCTTGGTTTACA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTA
** * *
60708350 AAATTACCAAAATACCC-CTGGTTTGTAAAATTACCAAAATACCCCTGATTTATG
1 AAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATTTGTA
* * * * * * *
60708404 AAATTACCGAAATACCCTTAGTTTGCAAAATTACTAAAATA-CCTTCGAATTGTAA
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTGT-A
* * *
60708459 AAATTACCAAAGTACCCTCAATTTATAGAATTACC
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACC
60708494 GTTTTACCCT
Statistics
Matches: 196, Mismatches: 48, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
53 45 0.23
54 124 0.63
55 27 0.14
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGTA
Found at i:60708360 original size:107 final size:106
Alignment explanation
Indices: 60708214--60708475 Score: 346
Period size: 107 Copynumber: 2.4 Consensus size: 106
60708204 CCTCAATTTC
* * *
60708214 TAAAATTACTAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTGAAATTACCA
1 TAAAATTACTAAAATA-CCTTGGTTT-AAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
* *
60708279 AAATACCCCTAATTTGTGAAATTACTGAAATACCCTT-GACTTG
64 AAATACCCCTAATTTATGAAATTACCGAAATACCCTTAG-CTTG
* *
60708322 TAAAATTACCAAAATACCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAA
1 TAAAATTACTAAAATACCTTGGTTTA-AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
* *
60708387 AATACCCCTGATTTATGAAATTACCGAAATACCCTTAGTTTG
65 AATACCCCTAATTTATGAAATTACCGAAATACCCTTAGCTTG
* * *
60708429 CAAAATTACTAAAATACCTTCGAATTGTAAAAATTACCAAAGTACCC
1 TAAAATTACTAAAATACCTT-G-GTT-TAAAAATTACCAAAATACCC
60708476 TCAATTTATA
Statistics
Matches: 136, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
107 98 0.72
108 17 0.12
109 19 0.14
110 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (106 bp):
TAAAATTACTAAAATACCTTGGTTTAAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTAATTTATGAAATTACCGAAATACCCTTAGCTTG
Found at i:60708491 original size:82 final size:80
Alignment explanation
Indices: 60708182--60708532 Score: 255
Period size: 81 Copynumber: 4.3 Consensus size: 80
60708172 AAATACTTTA
* * * * * ** * *
60708182 GTTTACCAAATTACTAAAAT-GCCCTCAATTTCTAAAATTACTAAAATACCCCTGGTTTGTAAAA
1 GTTTACAAAATTACTAAAATACCCCTGAA-TTGTAAAATTACCAAAATACCCCTAATTTATGAAA
* *
60708246 TTACCAAAATACCCCTA
65 TTACCGAAATA-CCCTT
*** * * ** * * * * *
60708263 GTTTGTGAAATTACCAAAATACCCCT-AATTTGTGAAATTACTGAAATACCCTTGACTTGTAAAA
1 GTTTACAAAATTACTAAAATACCCCTGAA-TTGTAAAATTACCAAAATACCCCTAATTTATGAAA
*
60708327 TTACCAAAATA-CCTT
65 TTACCGAAATACCCTT
* ** *
60708342 GGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGATTTATGAAA
1 -GTTTACAAAATTACTAAAATACCCCTGAATTGTAAAATTACCAAAATACCCCTAATTTATGAAA
60708407 TTACCGAAATACCCTT
65 TTACCGAAATACCCTT
* * *
60708423 AGTTTGCAAAATTACTAAAATA-CCTTCGAATTGTAAAAATTACCAAAGTA-CCCTCAATTTAT-
1 -GTTTACAAAATTACTAAAATACCCCT-GAATTGT-AAAATTACCAAAATACCCCT-AATTTATG
***
60708485 AGAATTACCGTTTTACCCTT
62 A-AATTACCGAAATACCCTT
*
60708505 GATTTACAAAATTATTAAAATACCCCTG
1 G-TTTACAAAATTACTAAAATACCCCTG
60708533 TAGGGTAGAA
Statistics
Matches: 221, Mismatches: 39, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
79 3 0.01
80 64 0.29
81 93 0.42
82 58 0.26
83 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.32
Consensus pattern (80 bp):
GTTTACAAAATTACTAAAATACCCCTGAATTGTAAAATTACCAAAATACCCCTAATTTATGAAAT
TACCGAAATACCCTT
Found at i:60708528 original size:27 final size:27
Alignment explanation
Indices: 60708189--60708529 Score: 224
Period size: 27 Copynumber: 12.6 Consensus size: 27
60708179 TTAGTTTACC
* * ** *
60708189 AAATTACTAAAATGCCCTCAATTTCTA
1 AAATTACCAAAATACCCTTGATTTATA
* * * *
60708216 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* * *
60708243 AAATTACCAAAATACCCCT-AGTTTGTG
1 AAATTACCAAAATACCCTTGA-TTTATA
* * * *
60708270 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCTTGATTTATA
** * *
60708297 AAATTACTGAAATACCCTTGACTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* *
60708324 AAATTACCAAAATA-CCTTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTATA
* * *
60708350 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTATA
* *
60708377 AAATTACCAAAATACCCCTGATTTATG
1 AAATTACCAAAATACCCTTGATTTATA
* **
60708404 AAATTACCGAAATACCCTT-AGTTTGCA
1 AAATTACCAAAATACCCTTGA-TTTATA
*
60708431 AAATTACTAAAATA-CCTTCGAATTGTA-A
1 AAATTACCAAAATACCCTT-G-ATT-TATA
* **
60708459 AAATTACCAAAGTACCCTCAATTTATA
1 AAATTACCAAAATACCCTTGATTTATA
* **** *
60708486 GAATTACCGTTTTACCCTTGATTTACA
1 AAATTACCAAAATACCCTTGATTTATA
**
60708513 AAATTATTAAAATACCC
1 AAATTACCAAAATACCC
60708530 CTGTAGGGTA
Statistics
Matches: 250, Mismatches: 54, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
26 29 0.12
27 200 0.80
28 16 0.06
29 5 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTATA
Found at i:60708583 original size:81 final size:81
Alignment explanation
Indices: 60708512--60708680 Score: 245
Period size: 81 Copynumber: 2.1 Consensus size: 81
60708502 CTTGATTTAC
*
60708512 AAAATTATTAAAATACCCCTGTAGGGTAGAATTA-TCGAAATACCCCTGTAGGGTAGAATTA-CT
1 AAAATTATCAAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCCTGTAGGGTAGAATTATC-
60708575 GAAATACCCTTGTAGGGT
64 GAAATACCCTTGTAGGGT
* * *
60708593 AGAATTATCGAAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGA
1 AAAATTATCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGA
*
60708658 GATACCCTTGT-GTGGT
66 AATACCCTTGTAG-GGT
60708674 AAAATTA
1 AAAATTA
60708681 CCATTTTGCC
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
80 1 0.01
81 76 0.96
82 2 0.03
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (81 bp):
AAAATTATCAAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTATCGA
AATACCCTTGTAGGGT
Found at i:60708680 original size:27 final size:27
Alignment explanation
Indices: 60708522--60708668 Score: 226
Period size: 27 Copynumber: 5.4 Consensus size: 27
60708512 AAAATTATTA
*
60708522 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTATCG
*
60708549 AAATACCCCTGTAGGGTAGAATTA-CTG
1 AAATACCCTTGTAGGGTAGAATTATC-G
60708576 AAATACCCTTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTATCG
60708603 AAATACCCTTGTAGGGTAGAATTA-CTG
1 AAATACCCTTGTAGGGTAGAATTATC-G
*
60708630 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCTTGTAGGGTAGAATTATCG
*
60708657 AGATACCCTTGT
1 AAATACCCTTGT
60708669 GTGGTAAAAT
Statistics
Matches: 112, Mismatches: 4, Indels: 8
0.90 0.03 0.06
Matches are distributed among these distances:
26 2 0.02
27 108 0.96
28 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGTAGGGTAGAATTATCG
Found at i:60708694 original size:54 final size:54
Alignment explanation
Indices: 60708522--60708681 Score: 268
Period size: 54 Copynumber: 3.0 Consensus size: 54
60708512 AAAATTATTA
*
60708522 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
*
60708576 AAATACCCTTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
* *
60708630 AAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTGT-GTGGTAAAATTAC
1 AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAG-GGTAGAATTAC
60708682 CATTTTGCCC
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 1 0.01
54 99 0.99
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACTG
Found at i:60708921 original size:25 final size:25
Alignment explanation
Indices: 60708887--60708981 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
60708877 AGGAAGTGCT
60708887 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
60708912 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
60708937 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
*
60708962 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
60708982 ATTAAAAGAG
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:60708994 original size:24 final size:25
Alignment explanation
Indices: 60708887--60708994 Score: 118
Period size: 25 Copynumber: 4.4 Consensus size: 25
60708877 AGGAAGTGCT
*
60708887 AAAAG-GGCTTTGCCCCAGTTTACC
1 AAAAGAGGCTTTGCCCCAGTTTATC
*
60708911 GAAAAG-GGCTTTGCCCCAGTTTACC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
60708936 GAAAAG-GGCTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTGCCCCAGTTTATC
* *
60708961 AAAA-AGGGCTTTGCCCTAG-TTATT
1 AAAAGA-GGCTTTGCCCCAGTTTATC
60708985 AAAAGAGGCT
1 AAAAGAGGCT
60708995 AGGCCTCCAG
Statistics
Matches: 77, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
24 16 0.21
25 61 0.79
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGAGGCTTTGCCCCAGTTTATC
Found at i:60712210 original size:52 final size:52
Alignment explanation
Indices: 60712100--60712277 Score: 222
Period size: 52 Copynumber: 3.5 Consensus size: 52
60712090 ACTAATGACT
* * *
60712100 CAAGTGTGGTACCATGTGAAGGCCACTTTGAGAAG--AGATAGC-TAGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* *
60712149 CAAGTGTGGTACTATGTGAAGACCATTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* * *
60712201 CAAGCGTGGTACTATGTGAAGGCCACTTTGTGAAGAATG-TAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
* *
60712252 CAAGGGTGGTACTATGTGTAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
60712278 GAGGTATTTG
Statistics
Matches: 113, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 31 0.27
50 2 0.02
51 39 0.35
52 41 0.36
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:60712265 original size:51 final size:51
Alignment explanation
Indices: 60712095--60712277 Score: 205
Period size: 51 Copynumber: 3.6 Consensus size: 51
60712085 ATGTCACTAA
* * *
60712095 TGACT-CAAGTGTGGTACCATGTGAAGGCCACTTTGAGAAG-AGATAGCTA
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
* * * *
60712144 GGTC-ACAAGTGTGGTACTATGTGAAGACCATTTTGTGAAGAAAGATAGCTT
1 TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTT
* *
60712195 TG-GTCACAAGCGTGGTACTATGTGAAGGCCACTTTGTGAAGAATG-TAGCTT
1 TGACT-ACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA-GATAGCTT
* *
60712246 TGACTACAAGGGTGGTACTATGTGTAGGCCAC
1 TGACTACAAGTGTGGTACTATGTGAAGGCCAC
60712278 GAGGTATTTG
Statistics
Matches: 112, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
49 33 0.29
51 44 0.39
52 35 0.31
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (51 bp):
TGACTACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTT
Found at i:60721521 original size:28 final size:27
Alignment explanation
Indices: 60721476--60721562 Score: 102
Period size: 28 Copynumber: 3.1 Consensus size: 27
60721466 GGAAGTAGTT
60721476 GGCCTGATGAGCCATATGAATGTGATTG
1 GGCCTGATG-GCCATATGAATGTGATTG
* *
60721504 GGCCTGATAGGCCTTATGAATATGATTG
1 GGCCTGAT-GGCCATATGAATGTGATTG
* * *
60721532 GGCCTGATGGGCCATGTGAACGAGATTG
1 GGCCTGAT-GGCCATATGAATGTGATTG
60721560 GGC
1 GGC
60721563 TTAAAGGGGC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
28 49 0.98
29 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.34, T:0.26
Consensus pattern (27 bp):
GGCCTGATGGCCATATGAATGTGATTG
Found at i:60721920 original size:27 final size:26
Alignment explanation
Indices: 60721881--60722246 Score: 238
Period size: 27 Copynumber: 13.7 Consensus size: 26
60721871 TAATAAAAAG
*
60721881 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCGAAATA-CCCTAGTTTGTA
*
60721908 AAATTACCGAAATACCCCCAGTTTGTA
1 AAATTACCGAAATA-CCCTAGTTTGTA
* *
60721935 AAATTA-CTAAAGTACACC-CGATTTGTA
1 AAATTACCGAAA-TAC-CCTAG-TTTGTA
* * *
60721962 AAATTACCGAAATACCTTCGGTTTGCA
1 AAATTACCGAAATACCCT-AGTTTGTA
** *
60721989 AAATTACTAAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCT-AGTTTGTA
** *
60722016 AAATTATTG-AATACCCTCA-ATTGTA
1 AAATTACCGAAATACCCT-AGTTTGTA
* *
60722041 AAATTA-CTAAAGTACCCTCGATTTGTA
1 AAATTACCGAAA-TACCCTAG-TTTGTA
* * * * *
60722068 AAATTACTGAAACACGCTCGATTTTTA
1 AAATTACCGAAATACCCTAG-TTTGTA
* *
60722095 AAATTATCGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTAG-TTTGTA
*
60722122 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCGAAATACCCT-AGTTTGTA
** * *
60722149 AAATTACTAAAACACCCTCGATTTGTA
1 AAATTACCGAAATACCCTAG-TTTGTA
* * *
60722176 AAATTATCGAAATACCCTTGTAGTGTA
1 AAATTACCGAAATACCCTAGT-TTGTA
* * *
60722203 AAATTACTGAAATACCCTTGTAGTGTA
1 AAATTACCGAAATACCCTAGT-TTGTA
* *
60722230 AAATGACCGACATACCC
1 AAATTACCGAAATACCC
60722247 CTGTAGGATA
Statistics
Matches: 275, Mismatches: 50, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
25 13 0.05
26 24 0.09
27 230 0.84
28 8 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (26 bp):
AAATTACCGAAATACCCTAGTTTGTA
Found at i:60721961 original size:54 final size:53
Alignment explanation
Indices: 60721902--60722246 Score: 360
Period size: 54 Copynumber: 6.4 Consensus size: 53
60721892 ATACCCCTAG
*
60721902 TTTGTAAAATTACCGAAATACCCCCAGTTTGTAAAATTACTAAAGTACACC-CGA
1 TTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACTAAA-TAC-CCTCGA
* * * *
60721956 TTTGTAAAATTACCGAAATACCTTCGGTTTGCAAAATTACTAAAATACCCTCAA
1 TTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACT-AAATACCCTCGA
** *
60722010 TTTGTAAAATTATTG-AATACCCTCA-ATTGTAAAATTACTAAAGTACCCTCGA
1 TTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACTAAA-TACCCTCGA
* * * * *
60722062 TTTGTAAAATTACTGAAACACGCTC-GATTTTTAAAATTATCGAAATACCCTCGA
1 TTTGTAAAATTACCGAAATACCCTCAG-TTTGTAAAATTA-CTAAATACCCTCGA
* *
60722116 TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACTAAAACACCCTCGA
1 TTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACT-AAATACCCTCGA
* * * *
60722170 TTTGTAAAATTATCGAAATACCCT-TGTAGTGTAAAATTACTGAAATACCCTTG-
1 TTTGTAAAATTACCGAAATACCCTCAGT-TTGTAAAATTACT-AAATACCCTCGA
* * *
60722223 TAGTGTAAAATGACCGACATACCC
1 T-TTGTAAAATTACCGAAATACCC
60722247 CTGTAGGATA
Statistics
Matches: 244, Mismatches: 36, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
51 3 0.01
52 34 0.14
53 20 0.08
54 180 0.74
55 7 0.03
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (53 bp):
TTTGTAAAATTACCGAAATACCCTCAGTTTGTAAAATTACTAAATACCCTCGA
Found at i:60722182 original size:81 final size:81
Alignment explanation
Indices: 60721881--60722220 Score: 363
Period size: 81 Copynumber: 4.2 Consensus size: 81
60721871 TAATAAAAAG
* * ** * * *
60721881 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCGAAATACCC-CCAGTTTGTAAAATTA-CT
1 AAATTACCGAAATACCCTC-AATTTGTAAAATTACTAAAACACCCTCGA-TTTGTAAAATTATCG
60721943 AAAGTACACC-CGATTTGTA
64 AAA-TAC-CCTCGATTTGTA
* ** * * * *
60721962 AAATTACCGAAATACCTTCGGTTTGCAAAATTACTAAAATACCCTCAATTTGTAAAATTATTG-A
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACTAAAACACCCTCGATTTGTAAAATTATCGAA
*
60722026 ATACCCTC-AATTGTA
66 ATACCCTCGATTTGTA
* * * * *
60722041 AAATTA-CTAAAGTACCCTCGATTTGTAAAATTACTGAAACACGCTCGATTTTTAAAATTATCGA
1 AAATTACCGAAA-TACCCTCAATTTGTAAAATTACTAAAACACCCTCGATTTGTAAAATTATCGA
60722105 AATACCCTCGATTTGTA
65 AATACCCTCGATTTGTA
60722122 AAATTACCGAAATACCCTCAATTTGTAAAATTACTAAAACACCCTCGATTTGTAAAATTATCGAA
1 AAATTACCGAAATACCCTCAATTTGTAAAATTACTAAAACACCCTCGATTTGTAAAATTATCGAA
* *
60722187 ATACCCTTG-TAGTGTA
66 ATACCCTCGAT-TTGTA
*
60722203 AAATTACTGAAATACCCT
1 AAATTACCGAAATACCCT
60722221 TGTAGTGTAA
Statistics
Matches: 221, Mismatches: 29, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
78 4 0.02
79 56 0.25
80 14 0.06
81 140 0.63
82 7 0.03
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (81 bp):
AAATTACCGAAATACCCTCAATTTGTAAAATTACTAAAACACCCTCGATTTGTAAAATTATCGAA
ATACCCTCGATTTGTA
Found at i:60722251 original size:27 final size:27
Alignment explanation
Indices: 60722172--60722262 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
60722162 ACCCTCGATT
* *
60722172 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* *
60722199 TGTAAAATTACTGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
* *
60722226 TGTAAAATGACCGACATACCCCTGTAG
1 TGTAAAATGACCGAAATACCCTTGTAG
60722253 -GATAAAATGA
1 TG-TAAAATGA
60722263 TTGTTTTGCC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.02
27 56 0.98
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.29
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCTTGTAG
Found at i:60723152 original size:56 final size:56
Alignment explanation
Indices: 60723061--60723171 Score: 213
Period size: 56 Copynumber: 2.0 Consensus size: 56
60723051 ATGTTTTTCT
60723061 ATTTAGTTTATTTAGTTAAGCACTTTGGTTTTTGATTTAGGTTGTATTAAGGCCTA
1 ATTTAGTTTATTTAGTTAAGCACTTTGGTTTTTGATTTAGGTTGTATTAAGGCCTA
*
60723117 ATTTTGTTTATTTAGTTAAGCACTTTGGTTTTTGATTTAGGTTGTATTAAGGCCT
1 ATTTAGTTTATTTAGTTAAGCACTTTGGTTTTTGATTTAGGTTGTATTAAGGCCT
60723172 CTTTATTTTC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.22, C:0.07, G:0.20, T:0.51
Consensus pattern (56 bp):
ATTTAGTTTATTTAGTTAAGCACTTTGGTTTTTGATTTAGGTTGTATTAAGGCCTA
Found at i:60723167 original size:31 final size:31
Alignment explanation
Indices: 60723076--60723167 Score: 92
Period size: 31 Copynumber: 3.2 Consensus size: 31
60723066 GTTTATTTAG
60723076 TTAAGCACTTTGGTTTTTGATTTAGGTTGTA
1 TTAAGCACTTTGGTTTTTGATTTAGGTTGTA
**
60723107 TTAAGGC-C--T-AATTTTG-TTTA--TT-TA
1 TTAA-GCACTTTGGTTTTTGATTTAGGTTGTA
60723131 GTTAAGCACTTTGGTTTTTGATTTAGGTTGTA
1 -TTAAGCACTTTGGTTTTTGATTTAGGTTGTA
60723163 TTAAG
1 TTAAG
60723168 GCCTCTTTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 20
0.66 0.06 0.28
Matches are distributed among these distances:
24 4 0.09
25 7 0.15
27 5 0.11
28 10 0.21
29 5 0.11
31 12 0.26
32 4 0.09
ACGTcount: A:0.22, C:0.07, G:0.21, T:0.51
Consensus pattern (31 bp):
TTAAGCACTTTGGTTTTTGATTTAGGTTGTA
Found at i:60724818 original size:93 final size:93
Alignment explanation
Indices: 60724705--60724876 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
60724695 CGCCCATAAG
* *
60724705 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
60724770 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
60724798 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60724863 ACGAGCTCGGATGC
66 ACGAGCTCGGATGC
60724877 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:60724873 original size:46 final size:46
Alignment explanation
Indices: 60724698--60724873 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
60724688 CGTAACCCGC
* *
60724698 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
60724744 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
60724794 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
60724837 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
60724874 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:60732087 original size:27 final size:27
Alignment explanation
Indices: 60732050--60732227 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
60732040 TAAATTGTAC
*
60732050 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60732077 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
60732104 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60732130 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
60732158 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
60732185 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
60732213 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60732228 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
27 106 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60732163 original size:81 final size:81
Alignment explanation
Indices: 60732051--60732200 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
60732041 AAATTGTACA
* * * * * *
60732051 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTGACCATGTAGCACTAAGTGT
60732116 GCGAAATGAAAATGAT
66 GCGAAATGAAAATGAT
* *
60732132 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGT
1 GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTGACCATGTAGCACTAAGTGT
60732197 GCGA
66 GCGA
60732201 GTTTGATTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTGACCATGTAGCACTAAGTGT
GCGAAATGAAAATGAT
Found at i:60740186 original size:27 final size:27
Alignment explanation
Indices: 60740149--60740327 Score: 189
Period size: 27 Copynumber: 6.6 Consensus size: 27
60740139 TAAATTGTAC
*
60740149 AGCACTAAGTGTGCGATTTGGCTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
60740176 AGCACTAAGTGTGCGATTTGACCATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** **
60740203 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
60740229 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
60740257 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
60740284 AGCACTAAGTGTGCGAGTTTTGATTATAT
1 AGCACTAAGTGTGCGA--TTTGACTATGT
*
60740313 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
60740328 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 106 0.83
29 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:60740262 original size:81 final size:81
Alignment explanation
Indices: 60740150--60740299 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
60740140 AAATTGTACA
* * * * * *
60740150 GCACTAAGTGTGCGATTTGGCTATGTAGCACTAAGTGTGCGATTTGACCATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTGACCATGTAGCACTAAGTGT
60740215 GCGAAATGAAAATGAT
66 GCGAAATGAAAATGAT
* *
60740231 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGT
1 GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTGACCATGTAGCACTAAGTGT
60740296 GCGA
66 GCGA
60740300 GTTTTGATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (81 bp):
GCACTAAGTGTGCGAATTGACCATGCAGCACTAAGTGTGCGAGTTGACCATGTAGCACTAAGTGT
GCGAAATGAAAATGAT
Found at i:60741780 original size:43 final size:43
Alignment explanation
Indices: 60741733--60741873 Score: 117
Period size: 43 Copynumber: 3.3 Consensus size: 43
60741723 CCCACGTCTA
*
60741733 GGACATTGGCATCGATATGTGATTTCGAGTAAGACCATGTTTG
1 GGACATTGGCATCGATATGTGATTTCGAGTAAGACCATATTTG
* * * *
60741776 GGACATCGGAATCG-TAACTGTGA-TTCGTGTAAGACCCTATTTG
1 GGACATTGGCATCGAT-A-TGTGATTTCGAGTAAGACCATATTTG
* * * * * *
60741819 GGATAGTGGCATCGACATGTGATTAC-ATGTAAGACCACATCTG
1 GGACATTGGCATCGATATGTGATTTCGA-GTAAGACCATATTTG
**
60741862 GGATGTTGGCAT
1 GGACATTGGCAT
60741874 TGTATGATAT
Statistics
Matches: 76, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
42 6 0.08
43 65 0.86
44 5 0.07
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
GGACATTGGCATCGATATGTGATTTCGAGTAAGACCATATTTG
Found at i:60744110 original size:27 final size:27
Alignment explanation
Indices: 60744080--60744263 Score: 251
Period size: 27 Copynumber: 6.8 Consensus size: 27
60744070 ATTATTGAAA
60744080 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
60744107 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
*
60744134 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
**
60744161 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* * *
60744188 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* **
60744215 TACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACCGTTT
* *
60744242 TACTCTTGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
60744264 TGAAATACCA
Statistics
Matches: 136, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCGTTT
Found at i:60744146 original size:54 final size:54
Alignment explanation
Indices: 60744080--60744263 Score: 296
Period size: 54 Copynumber: 3.4 Consensus size: 54
60744070 ATTATTGAAA
* *
60744080 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTT
*
60744134 TACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTT
* *
60744188 TACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTT
1 TACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTT
* **
60744242 TACTCTTGATTTACAAAATTAC
1 TACCCTCAATTTACAAAATTAC
60744264 TGAAATACCA
Statistics
Matches: 119, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 119 1.00
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTATTGTTT
Found at i:60744355 original size:27 final size:27
Alignment explanation
Indices: 60744284--60744464 Score: 109
Period size: 27 Copynumber: 6.7 Consensus size: 27
60744274 TTGGTTTACA
* * *
60744284 AAATTACCAAAATA-CCCTCGATCAGTA
1 AAATTACCAAAATACCCCTGGAT-TGTG
* *
60744311 AAATTAACAAAATACCCCTGGCTTGTG
1 AAATTACCAAAATACCCCTGGATTGTG
60744338 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTGGA-TTGTG
* * *
60744365 AAATTATCAAAATA-CTCTTGATT-TG
1 AAATTACCAAAATACCCCTGGATTGTG
* *** * ** *
60744390 TAAAATATTGAAATACCCCTGTAGGGTA
1 -AAATTACCAAAATACCCCTGGATTGTG
* * ** *
60744418 AAATTACCGAAATACCCCTGTAGGGTA
1 AAATTACCAAAATACCCCTGGATTGTG
*
60744445 AAATTACCGAAATACCCCTG
1 AAATTACCAAAATACCCCTG
60744465 TAGGGTAGAA
Statistics
Matches: 127, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
25 2 0.02
26 17 0.13
27 101 0.80
28 7 0.06
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGATTGTG
Found at i:60744465 original size:27 final size:27
Alignment explanation
Indices: 60744399--60744586 Score: 236
Period size: 27 Copynumber: 7.0 Consensus size: 27
60744389 GTAAAATATT
60744399 GAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAAAATTACC
60744426 GAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAAAATTACC
* *
60744453 GAAATACCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAAAATTACC
* *
60744480 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAAAATTACC
* * *
60744507 AAAATACCTCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAAAATTACC
* *
60744534 GAAATACCCCTATAAGG-AAGAATTACC
1 GAAATACCCCTGTAGGGTAA-AATTACC
* * * *
60744561 GAGATACCCTTTTGGGGT-AAATTACC
1 GAAATACCCCTGTAGGGTAAAATTACC
60744587 ATTTTGCCCC
Statistics
Matches: 142, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
26 8 0.06
27 134 0.94
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAAAATTACC
Found at i:60744816 original size:25 final size:24
Alignment explanation
Indices: 60744764--60744832 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
60744754 AGGAAATTCT
* *
60744764 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAAGGCTTTGCCCCAGTTTACC
*
60744788 AAAAAGGCTTTGCCCTAGTTTACC
1 AAAAAGGCTTTGCCCCAGTTTACC
*
60744812 GAAAAGAGCTTTGCCCCAGTT
1 AAAAAG-GCTTTGCCCCAGTT
60744833 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 26 0.67
25 13 0.33
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTACC
Found at i:60747063 original size:27 final size:27
Alignment explanation
Indices: 60747027--60747204 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
60747017 AATACTTTAG
* **
60747027 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACTGATTTACCCTCGA
* * *
60747054 TTTAAAAAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACTGATTTACCCTCGA
*
60747081 TTTACAGAATTACT-ATTTTACCCTCGA
1 TTTACAAAATTACTGA-TTTACCCTCGA
* *
60747108 TTTACAAAATTA-TCGTTTTACCATCGA
1 TTTACAAAATTACT-GATTTACCCTCGA
* *
60747135 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTGATTTACCCTCGA
* * * *
60747162 TTTATAGAATTATTGTTTTACCCTCGA
1 TTTACAAAATTACTGATTTACCCTCGA
*
60747189 TTTAAAAAATTACTGA
1 TTTACAAAATTACTGA
60747205 AACATCCTTG
Statistics
Matches: 126, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 124 0.98
28 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (27 bp):
TTTACAAAATTACTGATTTACCCTCGA
Found at i:60747162 original size:81 final size:81
Alignment explanation
Indices: 60747045--60747200 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 81
60747035 ATTACTGAAA
*
60747045 TACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCATCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*
60747110 TACAAAATTATCGTTT
66 TAAAAAATTATCGTTT
* * * * * *
60747126 TACCATCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTATTGTTTTACCCTCGATT
1 TACCATCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
60747191 TAAAAAATTA
66 TAAAAAATTA
60747201 CTGAAACATC
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.40
Consensus pattern (81 bp):
TACCATCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TAAAAAATTATCGTTT
Found at i:60747203 original size:54 final size:54
Alignment explanation
Indices: 60747045--60747203 Score: 237
Period size: 54 Copynumber: 2.9 Consensus size: 54
60747035 ATTACTGAAA
* *
60747045 TACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTAAAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
60747099 TACCCTCGATTTACAAAATTATCGTTTTACCATCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTAAAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * *
60747153 TACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTAAAAAATTACTG
1 TACCCTCGATTTAAAAAATTATCGTTTTACCCTCGATTTACAGAATTACTG
60747204 AAACATCCTT
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 95 1.00
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTAAAAAATTATCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:60747220 original size:81 final size:80
Alignment explanation
Indices: 60747033--60747229 Score: 218
Period size: 81 Copynumber: 2.4 Consensus size: 80
60747023 TTAGTTTACC
* * *
60747033 AAATTACTGAAATACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATT
1 AAATTACTGAAACATCCT-GATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATT
*
60747098 TTACCCTCGATTTACA
65 TTACCCTCGATTTAAA
** * * * * * *
60747114 AAATTATCGTTTTACCAT-C-GATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTATTG
1 AAATTA-C--TGAAACATCCTGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTA
60747177 TTTTACCCTCGATTTAAA
63 TTTTACCCTCGATTTAAA
*
60747195 AAATTACTGAAACATCCTTGGTTTACAAAATTACC
1 AAATTACTGAAACATCC-TGATTTACAAAATTACC
60747230 AAAATACCCT
Statistics
Matches: 92, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
78 5 0.05
79 1 0.01
80 1 0.01
81 80 0.87
82 1 0.01
83 1 0.01
84 3 0.03
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.38
Consensus pattern (80 bp):
AAATTACTGAAACATCCTGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTT
TACCCTCGATTTAAA
Found at i:60747227 original size:54 final size:54
Alignment explanation
Indices: 60747033--60747227 Score: 176
Period size: 54 Copynumber: 3.6 Consensus size: 54
60747023 TTAGTTTACC
* * * * *
60747033 AAATTACTGAAATACCCTCGATTTAAAAAATTACCGTTTTACCCTCGATTTACA
1 AAATTACTGAAACACCCTCGATTTACAAAATTATCGTTTTACCATCGATTTAAA
* *** *
60747087 GAATTACT-ATTTTACCCTCGATTTACAAAATTATCGTTTTACCATCGATTTACA
1 AAATTACTGA-AACACCCTCGATTTACAAAATTATCGTTTTACCATCGATTTAAA
* **** * * * *
60747141 GAATTACTGTTTTACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTAAA
1 AAATTACTGAAACACCCTCGATTTACAAAATTATCGTTTTACCATCGATTTAAA
* * *
60747195 AAATTACTGAAACATCCTTGGTTTACAAAATTA
1 AAATTACTGAAACACCCTCGATTTACAAAATTA
60747228 CCAAAATACC
Statistics
Matches: 117, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 116 0.99
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (54 bp):
AAATTACTGAAACACCCTCGATTTACAAAATTATCGTTTTACCATCGATTTAAA
Found at i:60747307 original size:27 final size:26
Alignment explanation
Indices: 60747222--60747374 Score: 94
Period size: 27 Copynumber: 5.7 Consensus size: 26
60747212 TTGGTTTACA
**
60747222 AAATTACCAAAATA-CCCTCGATCAGT
1 AAATTACCAAAATACCCCT-GATTTGT
** ** *
60747248 AAAATTAATAAAATACCCCTGGCTTAT
1 -AAATTACCAAAATACCCCTGATTTGT
60747275 AGAATTACCAAAATACCCCTGATTTGT
1 A-AATTACCAAAATACCCCTGATTTGT
* * *
60747302 GAAATTATCAAAATACTCTTGATTTGT
1 -AAATTACCAAAATACCCCTGATTTGT
* * * **
60747329 AAAATATCGAAATACCCCTGGA-GGGT
1 AAATTACCAAAATACCCCT-GATTTGT
*
60747355 AGAATTACCGAAATACCCCT
1 A-AATTACCAAAATACCCCT
60747375 ATAGGGTAGA
Statistics
Matches: 98, Mismatches: 23, Indels: 10
0.75 0.18 0.08
Matches are distributed among these distances:
26 19 0.19
27 74 0.76
28 5 0.05
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCCTGATTTGT
Found at i:60747380 original size:27 final size:27
Alignment explanation
Indices: 60747336--60747579 Score: 254
Period size: 27 Copynumber: 9.4 Consensus size: 27
60747326 TGTAAAATAT
*
60747336 CGAAATACCCCTGGAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
60747363 CGAAATACCCCTATA-GG--G---TA-
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
60747383 -G-AATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
60747408 CAAAATACCCCTGTAGGGCAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
60747435 CGAAATACCCCTGTTGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
60747462 CGAAATACCCCTGTAGGATAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** * * *
60747489 TAAAATATCTCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
60747516 TAAAATACCCCTGTAGGGTAGAATAAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
60747543 CGAAATACCCTTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
60747570 CGAGATACCC
1 CGAAATACCC
60747580 TTTTGGGATA
Statistics
Matches: 178, Mismatches: 30, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
18 10 0.06
19 3 0.02
21 3 0.02
24 3 0.02
26 2 0.01
27 157 0.88
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:60747389 original size:18 final size:18
Alignment explanation
Indices: 60747366--60747404 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
60747356 GAATTACCGA
60747366 AATACCCCTATAGGGTAG
1 AATACCCCTATAGGGTAG
* *
60747384 AATACCCTTGTAGGGTAG
1 AATACCCCTATAGGGTAG
60747402 AAT
1 AAT
60747405 TACCAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (18 bp):
AATACCCCTATAGGGTAG
Found at i:60747403 original size:45 final size:45
Alignment explanation
Indices: 60747339--60747431 Score: 141
Period size: 45 Copynumber: 2.1 Consensus size: 45
60747329 AAAATATCGA
* *
60747339 AATACCCCTGGAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATACCCCTGGAGGGTAGAATTACCAAAATACCCCTATAGGGCAG
* * *
60747384 AATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGCAG
1 AATACCCCTGGAGGGTAGAATTACCAAAATACCCCTATAGGGCAG
60747429 AAT
1 AAT
60747432 TACCGAAATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (45 bp):
AATACCCCTGGAGGGTAGAATTACCAAAATACCCCTATAGGGCAG
Found at i:60747851 original size:25 final size:24
Alignment explanation
Indices: 60747799--60747867 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
60747789 AGGAAATTCT
* * *
60747799 AAAAGGGCTATGCCTCAGTTTACC
1 AAAAGAGCTTTGCCCCAGTTTACC
*
60747823 AAAA-AGGCTTTGCCCTAGTTTACC
1 AAAAGA-GCTTTGCCCCAGTTTACC
60747847 GAAAAGAGCTTTGCCCCAGTT
1 -AAAAGAGCTTTGCCCCAGTT
60747868 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
24 19 0.51
25 17 0.46
26 1 0.03
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (24 bp):
AAAAGAGCTTTGCCCCAGTTTACC
Found at i:60750101 original size:27 final size:27
Alignment explanation
Indices: 60750063--60750265 Score: 180
Period size: 27 Copynumber: 7.5 Consensus size: 27
60750053 AATACTTTTG
* ** *
60750063 TTTACCAAATTACTGAAGTACCCTTGA
1 TTTACAAAATTACTGATTTACCCTCGA
* *
60750090 TTTACAAAATTA-TCATTTTACCCTCAA
1 TTTACAAAATTACTGA-TTTACCCTCGA
* *
60750117 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTGATTTACCCTCGA
* * *
60750144 TTTACAAAATTA-TCGTTTTACCATTGA
1 TTTACAAAATTACT-GATTTACCCTCGA
* *
60750171 TTTACAAAATTACTGTTTTACCCTCAA
1 TTTACAAAATTACTGATTTACCCTCGA
* * *
60750198 TTTATAGAATTAC-CATTTTACCCTCGA
1 TTTACAAAATTACTGA-TTTACCCTCGA
* *
60750225 TTTACAGAATTA-TTATTTTACCCTCGA
1 TTTACAAAATTACTGA-TTTACCCTCGA
60750252 TTTACAAAATTACT
1 TTTACAAAATTACT
60750266 AAAATACCAT
Statistics
Matches: 145, Mismatches: 24, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.02
27 139 0.96
28 3 0.02
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (27 bp):
TTTACAAAATTACTGATTTACCCTCGA
Found at i:60750146 original size:54 final size:54
Alignment explanation
Indices: 60750081--60750263 Score: 258
Period size: 54 Copynumber: 3.4 Consensus size: 54
60750071 ATTACTGAAG
* *
60750081 TACCCTTGATTTACAAAATTATCATTTTACCCTCAATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
60750135 TACCCTCGATTTACAAAATTATCGTTTTACCATTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAGAATTACTGTTT
* * * * * *
60750189 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAGAATTACTGTTT
60750243 TACCCTCGATTTACAAAATTA
1 TACCCTCGATTTACAAAATTA
60750264 CTAAAATACC
Statistics
Matches: 110, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 110 1.00
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTATCATTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:60750198 original size:81 final size:82
Alignment explanation
Indices: 60750081--60750265 Score: 275
Period size: 81 Copynumber: 2.3 Consensus size: 82
60750071 ATTACTGAAG
**
60750081 TACCCTTGATTTACAAAATTA-TCATTTTACCCTCAATTTACAGAATTACTGTTTTACCCTCGAT
1 TACCCTTGATTTACAAAATTACTCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGAT
*
60750145 TTACAAAATTATCGTTT
66 TTACAAAATTATCATTT
* * *
60750162 TACCATTGATTTACAAAATTACT-GTTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGAT
1 TACCCTTGATTTACAAAATTACTCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGAT
* *
60750226 TTACAGAATTATTATTT
66 TTACAAAATTATCATTT
*
60750243 TACCCTCGATTTACAAAATTACT
1 TACCCTTGATTTACAAAATTACT
60750266 AAAATACCAT
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
81 92 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.42
Consensus pattern (82 bp):
TACCCTTGATTTACAAAATTACTCATTTTACCCTCAATTTACAGAATTACCATTTTACCCTCGAT
TTACAAAATTATCATTT
Found at i:60750273 original size:27 final size:27
Alignment explanation
Indices: 60750063--60750441 Score: 178
Period size: 27 Copynumber: 14.0 Consensus size: 27
60750053 AATACTTTTG
* * * *
60750063 TTTACCAAATTACTGAAGTACCCTTGA
1 TTTACAAAATTACTAAATTACCCTCGA
** *
60750090 TTTACAAAATTA-TCATTTTACCCTCAA
1 TTTACAAAATTACT-AAATTACCCTCGA
* ***
60750117 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTACAAAATTACTAAATTACCCTCGA
* * *
60750144 TTTACAAAATTATCGT--TTTACCATTGA
1 TTTACAAAATTA-C-TAAATTACCCTCGA
*** *
60750171 TTTACAAAATTACTGTTTTACCCTCAA
1 TTTACAAAATTACTAAATTACCCTCGA
* * * **
60750198 TTTATAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACTAAATTACCCTCGA
* * **
60750225 TTTACAGAATTATTATTTTACCCTCGA
1 TTTACAAAATTACTAAATTACCCTCGA
* * * *
60750252 TTTACAAAATTACTAAAATACCATTGG
1 TTTACAAAATTACTAAATTACCCTCGA
* *
60750279 TTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACTAAATTACCCTCGA
* * * * *
60750306 -TCAGTAAAATTAAC-AAAATAGCCCTGGC
1 TTTA-CAAAATT-ACTAAATTA-CCCTCGA
* *
60750334 TTGT--AAAATTACCAAAATACCCTCGA
1 TT-TACAAAATTACTAAATTACCCTCGA
* * * ***
60750360 TTTATAGAATTATTGTTTTACCCTCGA
1 TTTACAAAATTACTAAATTACCCTCGA
* * * *
60750387 TTTACAAAAGTACTAAAATACCCTTGG
1 TTTACAAAATTACTAAATTACCCTCGA
* *
60750414 TTTACAAAATTACCAAAATACCCTCGA
1 TTTACAAAATTACTAAATTACCCTCGA
60750441 T
1 T
60750442 CAGTAAAATT
Statistics
Matches: 274, Mismatches: 64, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
25 2 0.01
26 13 0.05
27 248 0.91
28 9 0.03
29 2 0.01
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTACTAAATTACCCTCGA
Found at i:60750283 original size:54 final size:53
Alignment explanation
Indices: 60750063--60750291 Score: 201
Period size: 54 Copynumber: 4.2 Consensus size: 53
60750053 AATACTTTTG
* *** * * **
60750063 TTTACCAAATTACTGAAGTACCCTTGATTTACAAAATTA-TCATTTTACCCTCAA
1 TTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACT-A-TTTACCATTGA
*
60750117 TTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATCGT-TTTACCATTGA
1 TTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTA-C-TATTTACCATTGA
* * * * * *
60750171 TTTACAAAATTACTGTTTTACCCTCAATTTATAGAATTACCATTTTACCCTCGA
1 TTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTA-TTTACCATTGA
* * * ** *
60750225 TTTACAGAATTATTATTTTACCCTCGATTTACAAAATTACTAAAATACCATTGG
1 TTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACT-ATTTACCATTGA
60750279 TTTACAAAATTAC
1 TTTACAAAATTAC
60750292 CAAAATACCC
Statistics
Matches: 139, Mismatches: 30, Indels: 12
0.77 0.17 0.07
Matches are distributed among these distances:
53 1 0.01
54 136 0.98
55 1 0.01
57 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.40
Consensus pattern (53 bp):
TTTACAAAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTACCATTGA
Found at i:60750290 original size:81 final size:81
Alignment explanation
Indices: 60750108--60750293 Score: 210
Period size: 81 Copynumber: 2.3 Consensus size: 81
60750098 ATTATCATTT
* ** * *
60750108 TACCCTCAATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATCGTTTTACCATTGATT
1 TACCATCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATCATTTTACCATCGATT
****
60750173 TACAAAATTACTGTTT
66 TACAAAATTACTAAAA
* * * * *
60750189 TACCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTATTATTTTACCCTCGATT
1 TACCATCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATCATTTTACCATCGATT
60750254 TACAAAATTACTAAAA
66 TACAAAATTACTAAAA
*** *
60750270 TACCATTGGTTTACAAAATTACCA
1 TACCATCAATTTACAGAATTACCA
60750294 AAATACCCTC
Statistics
Matches: 87, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 87 1.00
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.39
Consensus pattern (81 bp):
TACCATCAATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTATCATTTTACCATCGATT
TACAAAATTACTAAAA
Found at i:60750449 original size:27 final size:27
Alignment explanation
Indices: 60750243--60750531 Score: 197
Period size: 27 Copynumber: 10.7 Consensus size: 27
60750233 ATTATTATTT
** *
60750243 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * **
60750270 TACCATTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
** *
60750297 TACCCTCGATCAGTAAAATTAACAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
60750324 TAGCCCT-GGCTTGTAAAATTACCAAAA
1 TA-CCCTCGATTTGTAAAATTACCAAAA
* * ******
60750351 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTGTAAAATTACCAAAA
** * *
60750378 TACCCTCGATTTACAAAAGTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
60750405 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
** *
60750432 TACCCTCGATCAGTAAAATTAACAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
60750459 TAGCCCT-GGCTTGTAAAATTACCAAAA
1 TA-CCCTCGATTTGTAAAATTACCAAAA
* *
60750486 TACCC-CTGATTTGTGAAATTATCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAA
*
60750513 TACTCTCGATTTGTAAAAT
1 TACCCTCGATTTGTAAAAT
60750532 ATCGAAATAC
Statistics
Matches: 199, Mismatches: 57, Indels: 12
0.74 0.21 0.04
Matches are distributed among these distances:
26 7 0.04
27 183 0.92
28 9 0.05
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:60750507 original size:135 final size:135
Alignment explanation
Indices: 60750216--60750490 Score: 514
Period size: 135 Copynumber: 2.0 Consensus size: 135
60750206 ATTACCATTT
* *
60750216 TACCCTCGATTTACAGAATTATTATTTTACCCTCGATTTACAAAATTACTAAAATACCATTGGTT
1 TACCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAAAAGTACTAAAATACCATTGGTT
60750281 TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
66 TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
60750346 CAAAA
131 CAAAA
* *
60750351 TACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTACAAAAGTACTAAAATACCCTTGGTT
1 TACCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAAAAGTACTAAAATACCATTGGTT
60750416 TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
66 TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
60750481 CAAAA
131 CAAAA
60750486 TACCC
1 TACCC
60750491 CTGATTTGTG
Statistics
Matches: 136, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
135 136 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (135 bp):
TACCCTCGATTTATAGAATTATTATTTTACCCTCGATTTACAAAAGTACTAAAATACCATTGGTT
TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
CAAAA
Found at i:60750521 original size:135 final size:135
Alignment explanation
Indices: 60750216--60750524 Score: 460
Period size: 135 Copynumber: 2.3 Consensus size: 135
60750206 ATTACCATTT
* * *** *
60750216 TACCCTCGATTTACAGAATTATTATTTTACCCTCGATTTACAAAATTACTAAAATACCATTGGTT
1 TACCCTCGATTTATAGAATTATCAAAATACCCTCGATTTACAAAAGTACTAAAATACCATTGGTT
60750281 TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
66 TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
60750346 CAAAA
131 CAAAA
***** *
60750351 TACCCTCGATTTATAGAATTATTGTTTTACCCTCGATTTACAAAAGTACTAAAATACCCTTGGTT
1 TACCCTCGATTTATAGAATTATCAAAATACCCTCGATTTACAAAAGTACTAAAATACCATTGGTT
60750416 TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
66 TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
60750481 CAAAA
131 CAAAA
* *
60750486 TACCC-CTGATTTGT-GAAATTATCAAAATACTCTCGATTT
1 TACCCTC-GATTTATAG-AATTATCAAAATACCCTCGATTT
60750525 GTAAAATATC
Statistics
Matches: 161, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
134 2 0.01
135 159 0.99
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (135 bp):
TACCCTCGATTTATAGAATTATCAAAATACCCTCGATTTACAAAAGTACTAAAATACCATTGGTT
TACAAAATTACCAAAATACCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGTAAAATTAC
CAAAA
Found at i:60750527 original size:54 final size:54
Alignment explanation
Indices: 60750419--60750546 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 54
60750409 CTTGGTTTAC
*
60750419 AAAATTACCAAAATA-CCCTCGATCAGTAAAATTAACAAAATAGCCCTGGCTTGT
1 AAAATTACCAAAATACCCCT-GATCAGTAAAATTAACAAAATAGCCCTGACTTGT
** * * * *
60750473 AAAATTACCAAAATACCCCTGATTTGTGAAATTATCAAAATA-CTCTCGATTTGT
1 AAAATTACCAAAATACCCCTGATCAGTAAAATTAACAAAATAGCCCT-GACTTGT
* *
60750527 AAAA-TATCGAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
60750547 TAGGGTAGAA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
53 17 0.27
54 42 0.67
55 4 0.06
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.27
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATCAGTAAAATTAACAAAATAGCCCTGACTTGT
Found at i:60750566 original size:27 final size:27
Alignment explanation
Indices: 60750534--60750685 Score: 182
Period size: 27 Copynumber: 6.0 Consensus size: 27
60750524 TGTAAAATAT
60750534 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
60750561 CGAAATACCCCTGTA-GG--G---TA-
1 CGAAATACCCCTGTAGGGTAGAATTAC
60750581 -G-AATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
60750606 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
60750633 CGAAATACCCCTGTAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
60750660 CGAGATA-CCCTTTAGGGTA-AATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
60750685 C
1 C
60750686 ATTTTGCCCC
Statistics
Matches: 109, Mismatches: 7, Indels: 20
0.80 0.05 0.15
Matches are distributed among these distances:
18 12 0.11
19 3 0.03
21 3 0.03
24 3 0.03
25 7 0.06
26 12 0.11
27 69 0.63
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:60750587 original size:18 final size:18
Alignment explanation
Indices: 60750564--60750602 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
60750554 GAATTACCGA
60750564 AATACCCCTGTAGGGTAG
1 AATACCCCTGTAGGGTAG
60750582 AATACCCCTGTAGGGTAG
1 AATACCCCTGTAGGGTAG
60750600 AAT
1 AAT
60750603 TACTAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (18 bp):
AATACCCCTGTAGGGTAG
Found at i:60750601 original size:45 final size:45
Alignment explanation
Indices: 60750537--60750629 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
60750527 AAAATATCGA
*
60750537 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
*
60750582 AATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAG
1 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
60750627 AAT
1 AAT
60750630 TACCGAAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (45 bp):
AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:60750928 original size:25 final size:25
Alignment explanation
Indices: 60750888--60750956 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
60750878 AGGAAGTGCT
*
60750888 AAAAGGG-TATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCG
60750912 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCG
*
60750937 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCTAGTT
60750957 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
24 7 0.17
25 35 0.83
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCG
Found at i:60751683 original size:56 final size:56
Alignment explanation
Indices: 60751594--60751768 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
60751584 ACAAGGGATG
*
60751594 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
60751650 ATGGGCAAAACATGTCATGAAACATGTTATGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
60751706 AT-GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
60751761 ATGGGCAA
1 ATGGGCAA
60751769 TAAACTAATA
Statistics
Matches: 115, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
55 54 0.47
56 61 0.53
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:60751738 original size:55 final size:55
Alignment explanation
Indices: 60751597--60751764 Score: 309
Period size: 55 Copynumber: 3.0 Consensus size: 55
60751587 AGGGATGATG
*
60751597 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCAT
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCAT
*
60751652 GGGCAAAACATGTCATGAAACATGTTATGTTAATGGAAGAATAAAATAAGAAGCAT
1 -GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCAT
60751708 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCAT
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCAT
60751763 GG
1 GG
60751765 GCAATAAACT
Statistics
Matches: 109, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
55 56 0.51
56 53 0.49
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (55 bp):
GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCAT
Found at i:60753095 original size:40 final size:40
Alignment explanation
Indices: 60752898--60753081 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
60752888 CGAATGATGT
** * * *
60752898 CCGGGCTAAGTCCCGAAGGC-TTTGTGTTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-CGAGTTACTATAA
* * *
60752938 CCGGACTAAGAT-CCGAAGGCATTTGTGTGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
60752978 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
60753016 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
60753057 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
60753082 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 34 0.27
40 82 0.66
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:60753103 original size:79 final size:79
Alignment explanation
Indices: 60752950--60753114 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
60752940 GGACTAAGAT
* * **
60752950 CCGAAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
60753015 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
60753029 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
60753092 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
60753108 CCGAAGG
1 CCGAAGG
60753115 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:60757099 original size:27 final size:27
Alignment explanation
Indices: 60757068--60757287 Score: 305
Period size: 27 Copynumber: 8.1 Consensus size: 27
60757058 AAAATTAATT
*
60757068 AAATGACCATAATACCCCTATAGGGTA
1 AAATGACCGTAATACCCCTATAGGGTA
* *
60757095 AAATGACCGCAATACCCTTATAGGGTA
1 AAATGACCGTAATACCCCTATAGGGTA
*
60757122 AAATGACCGTAATACCCCTGTAGGGTA
1 AAATGACCGTAATACCCCTATAGGGTA
* * *
60757149 AAATGGCCGTAATGCCCCTATAAGGTA
1 AAATGACCGTAATACCCCTATAGGGTA
* * * *
60757176 AAATGATCATAATGCCCATATAGGGTA
1 AAATGACCGTAATACCCCTATAGGGTA
*
60757203 AAATGACCGTAATACCCCTGTAGGGTA
1 AAATGACCGTAATACCCCTATAGGGTA
*
60757230 AAATGACCGTAATGCCCCTATAGGGTA
1 AAATGACCGTAATACCCCTATAGGGTA
* *
60757257 AAATGACCGTAATACCCCTGTATGGTA
1 AAATGACCGTAATACCCCTATAGGGTA
60757284 AAAT
1 AAAT
60757288 AATAATTATG
Statistics
Matches: 168, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 168 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
AAATGACCGTAATACCCCTATAGGGTA
Found at i:60758112 original size:74 final size:74
Alignment explanation
Indices: 60757969--60758113 Score: 227
Period size: 74 Copynumber: 2.0 Consensus size: 74
60757959 GGAAATATAT
* * * *
60757969 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCAGGGTAAGTCCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCAGGGTAAGACCCGATAACTACGCGTA
60758034 GAGATTATG
66 GAGATTATG
* * *
60758043 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTTCGCGTA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCAGGGTAAGACCCGATAACTACGCGTA
60758108 GAGATT
66 GAGATT
60758114 TCGTCTGAGC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 64 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (74 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCAGGGTAAGACCCGATAACTACGCGTA
GAGATTATG
Found at i:60758114 original size:37 final size:37
Alignment explanation
Indices: 60757969--60758096 Score: 229
Period size: 37 Copynumber: 3.5 Consensus size: 37
60757959 GGAAATATAT
60757969 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
60758006 TCAGGGTAAGTCCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60758043 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
60758080 TCCGGGTAAGACCCGAT
1 TCCGGGTAAGACCCGAT
60758097 AACTTCGCGT
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 86 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60759665 original size:40 final size:40
Alignment explanation
Indices: 60759382--60759653 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
60759372 GAGAATTGAG
*
60759382 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
60759422 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
60759462 AGTGATGTATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
60759502 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
60759542 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
60759582 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
60759622 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
60759654 ATCATGCTGG
Statistics
Matches: 219, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 219 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:60763652 original size:47 final size:47
Alignment explanation
Indices: 60763598--60763791 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
60763588 TTAGGATTTT
** *
60763598 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
60763645 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAACGGACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
60763692 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
60763739 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
60763786 ATGTGA
1 ATGTGA
60763792 AATATGTATG
Statistics
Matches: 130, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:60763673 original size:25 final size:25
Alignment explanation
Indices: 60763645--60763723 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
60763635 CGAATGGCCA
60763645 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * * *
60763670 ATGTGAT-AAGGCCGAAC--GGACA-
1 ATGTGATGAATG-TGAACATGCATAT
*
60763692 ATGTGATGAATGTGAGCATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
60763717 GTGTGAT
1 ATGTGAT
60763724 AAGGCCGAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 10 0.26
23 6 0.15
24 6 0.15
25 17 0.44
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:60763915 original size:98 final size:96
Alignment explanation
Indices: 60763762--60763945 Score: 289
Period size: 98 Copynumber: 1.9 Consensus size: 96
60763752 GAACATGCAT
* *
60763762 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
60763827 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* *
60763858 ATATGTGGTAAAGCTGAATGG-TCAATGAGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGAG-AA-ATATATATGAGAAATGTATATGTGGTAAAGC
*
60763922 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
60763946 GGCGATGTGC
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
95 1 0.01
96 25 0.31
97 2 0.03
98 52 0.65
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGAGAAATATATATGAGAAATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:60763961 original size:50 final size:48
Alignment explanation
Indices: 60763761--60763945 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
60763751 TGAACATGCA
*
60763761 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAAATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
60763809 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * * *
60763857 CATATGTGGTAAAGCTGAATGG-TCAATGAGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
60763907 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
60763946 GGCGATGTGC
Statistics
Matches: 123, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.63
49 4 0.03
50 39 0.32
51 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:60764236 original size:37 final size:37
Alignment explanation
Indices: 60764091--60764235 Score: 245
Period size: 37 Copynumber: 3.9 Consensus size: 37
60764081 GGAAATATAT
60764091 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60764128 TCCGGGTAAGTCCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
60764165 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
60764202 TCCGGGTAAGACCCGATAACTTCGCGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
60764236 TCGTCTGAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:60765161 original size:33 final size:33
Alignment explanation
Indices: 60765118--60765182 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
60765108 GCATTACACT
* * * *
60765118 GTACTGTTACTGTATAGGTCTAAGGCCTAGACC
1 GTACTATTACTGAATAGGGCTAAGGCCCAGACC
*
60765151 GTACTATTACTGAATAGGGCTTAGGCCCAGAC
1 GTACTATTACTGAATAGGGCTAAGGCCCAGAC
60765183 TGTTACTGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.28
Consensus pattern (33 bp):
GTACTATTACTGAATAGGGCTAAGGCCCAGACC
Found at i:60765222 original size:21 final size:21
Alignment explanation
Indices: 60765196--60765238 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
60765186 TACTGCATGC
60765196 ATTGTTTACTGTTTGACTGAT
1 ATTGTTTACTGTTTGACTGAT
60765217 ATTGTTTACTGTTTGACTGAT
1 ATTGTTTACTGTTTGACTGAT
60765238 A
1 A
60765239 GCGAATTACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.09, G:0.19, T:0.51
Consensus pattern (21 bp):
ATTGTTTACTGTTTGACTGAT
Found at i:60785182 original size:128 final size:128
Alignment explanation
Indices: 60784949--60785209 Score: 441
Period size: 128 Copynumber: 2.0 Consensus size: 128
60784939 CACGACCAAG
*
60784949 GCTTTGGTTTGCTAGAATCGCTTGGATCTCGAATCCGTAGTGGCGGTTGTGGTGCTTGTTTCCTG
1 GCTTTGGTTTGCTAGAATCACTTGGATCTCGAATCCGTAGTGGCGGTTGTGGTGCTTGTTTCCTG
* *
60785014 GCATTGTTAGAAGTATACAATGGATTTGAAAAAGAATTAAATAGAGTATTACCTCGTGTAGAA
66 GCATTGTTAGAAATATACAATGGATTTGAAAAAGAATTAAATAGAGTATTACCTCGAGTAGAA
* *
60785077 GCTTTGGTTTGCTGGATTCACTTGGATCTCGAATCCGTAGTGGCGGTTGTGGTGCTTGTTTCCTG
1 GCTTTGGTTTGCTAGAATCACTTGGATCTCGAATCCGTAGTGGCGGTTGTGGTGCTTGTTTCCTG
* * * *
60785142 GTATTGTTAGAAATATACAATGGATTTGAAAAAGATTTAAATGGAGTATTACCTTGAGTAGAA
66 GCATTGTTAGAAATATACAATGGATTTGAAAAAGAATTAAATAGAGTATTACCTCGAGTAGAA
60785205 GCTTT
1 GCTTT
60785210 TCTACGTTGT
Statistics
Matches: 124, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
128 124 1.00
ACGTcount: A:0.25, C:0.13, G:0.26, T:0.36
Consensus pattern (128 bp):
GCTTTGGTTTGCTAGAATCACTTGGATCTCGAATCCGTAGTGGCGGTTGTGGTGCTTGTTTCCTG
GCATTGTTAGAAATATACAATGGATTTGAAAAAGAATTAAATAGAGTATTACCTCGAGTAGAA
Found at i:60794875 original size:29 final size:29
Alignment explanation
Indices: 60794840--60794913 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
60794830 GTTGTGAGAT
* *
60794840 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
60794869 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
60794898 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
60794914 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:60800801 original size:30 final size:30
Alignment explanation
Indices: 60800767--60800827 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
60800757 TCCTTAACTC
60800767 AAACTTTGACAAAATTACAATTTTGCCCCT
1 AAACTTTGACAAAATTACAATTTTGCCCCT
* * * *
60800797 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTGACAAAATTACAATTTTGCCCCT
60800827 A
1 A
60800828 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AAACTTTGACAAAATTACAATTTTGCCCCT
Found at i:60805031 original size:47 final size:47
Alignment explanation
Indices: 60804980--60805145 Score: 212
Period size: 47 Copynumber: 3.5 Consensus size: 47
60804970 GTGTATATGA
60804980 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
* *
60805027 GATAAGGCCGAATGGCCAATGTGATGAATATGAACATGCATATATGT
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
* * *
60805074 GATAAGGCCGAATGGCTAATGTGA-AATATGTATGAGATATGCATATGTG-
1 GATAAGGCCGAATGGCCAATGTGATGA-ATG--TGA-ACATGCATATGTGT
* *
60805123 G-TAAAGCCGAATGGTCAATGTGA
1 GATAAGGCCGAATGGCCAATGTGA
60805146 AATATATATA
Statistics
Matches: 105, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
46 1 0.01
47 70 0.67
48 19 0.18
49 4 0.04
50 11 0.10
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGT
Found at i:60805160 original size:50 final size:48
Alignment explanation
Indices: 60805067--60805251 Score: 273
Period size: 48 Copynumber: 3.8 Consensus size: 48
60805057 TGAACATGCA
* *
60805067 TATATGTGATAAGGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
60805115 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
60805165 TATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
60805213 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
60805252 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 77 0.62
49 4 0.03
50 41 0.33
51 1 0.01
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:60805186 original size:98 final size:98
Alignment explanation
Indices: 60804971--60805248 Score: 297
Period size: 98 Copynumber: 2.9 Consensus size: 98
60804961 TGTGATTGTG
* * * * *
60804971 TGTATATGAGATAAGGCCGAATGGCCAATGTGATGA-ATG--TGA-ACATGCATATGTGTGATAA
1 TGTATATGTGATAAAGCCGAATGGCTAATGTGA-AATATGTATGAGATATGCATATGTG-G-TAA
* * * *
60805032 GGCCGAATGGCCAATGTG--AT-GA-ATATGA-ACA
63 AGCCGAATGGCTAATGTGAAATATATATATGAGATA
*
60805063 TGCATATATGTGATAAGGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAA
1 TG--TATATGTGATAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAA
60805128 GCCGAATGG-TCAATGTGAAATATATATATGAGATA
64 GCCGAATGGCT-AATGTGAAATATATATATGAGATA
* * * *
60805163 TGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAGATATGTATATGTGGTAAAGC
1 TGTATATGTGATAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGC
*
60805228 CGAATGGCTAGTGTGAAATAT
66 CGAATGGCTAATGTGAAATAT
60805249 GTAGGCGATG
Statistics
Matches: 159, Mismatches: 14, Indels: 20
0.82 0.07 0.10
Matches are distributed among these distances:
92 2 0.01
93 1 0.01
94 32 0.20
95 18 0.11
96 4 0.03
97 14 0.09
98 77 0.48
99 7 0.04
100 4 0.03
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.29
Consensus pattern (98 bp):
TGTATATGTGATAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGCATATGTGGTAAAGC
CGAATGGCTAATGTGAAATATATATATGAGATA
Found at i:60805442 original size:37 final size:37
Alignment explanation
Indices: 60805387--60805504 Score: 166
Period size: 37 Copynumber: 3.2 Consensus size: 37
60805377 ACATGAAACT
* * *
60805387 TGGAAATATATTCTGGGTAAGACTCGATGACTACGTG
1 TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
60805424 TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
* * *
60805461 TGGAGAT-TTTGTCCGGGTAAGACCCGATAACTCCGTG
1 TGGAGATATAT-TCCGGGTAAGACCCGATGACTACGTG
60805498 TGGAGAT
1 TGGAGAT
60805505 TTTGTCTGAG
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
36 2 0.03
37 72 0.97
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (37 bp):
TGGAGATATATTCCGGGTAAGACCCGATGACTACGTG
Found at i:60805505 original size:37 final size:37
Alignment explanation
Indices: 60805401--60805510 Score: 168
Period size: 37 Copynumber: 3.0 Consensus size: 37
60805391 AATATATTCT
* *
60805401 GGGTAAGACTCGATGACTACGTGTGGAGATATAT-TCC
1 GGGTAAGACCCGATGACTACGTGTGGAGAT-TTTGTCC
60805438 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
* *
60805475 GGGTAAGACCCGATAACTCCGTGTGGAGATTTTGTC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTC
60805511 TGAGCTAAAG
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 2 0.03
37 66 0.97
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCC
Found at i:60809556 original size:14 final size:14
Alignment explanation
Indices: 60809529--60809563 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
60809519 ATACAGTCAT
60809529 CAGAATCAAATATA
1 CAGAATCAAATATA
60809543 CA-AATCAGAATATA
1 CAGAATCA-AATATA
60809557 CAGAATC
1 CAGAATC
60809564 CTATCCCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 5 0.26
14 10 0.53
15 4 0.21
ACGTcount: A:0.54, C:0.17, G:0.09, T:0.20
Consensus pattern (14 bp):
CAGAATCAAATATA
Found at i:60809770 original size:12 final size:12
Alignment explanation
Indices: 60809753--60809782 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
60809743 TTCCCATTCC
60809753 AAAATAGATACA
1 AAAATAGATACA
60809765 AAAATAGATACA
1 AAAATAGATACA
*
60809777 GAAATA
1 AAAATA
60809783 ACATATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (12 bp):
AAAATAGATACA
Found at i:60811923 original size:39 final size:39
Alignment explanation
Indices: 60811761--60811913 Score: 234
Period size: 39 Copynumber: 3.9 Consensus size: 39
60811751 ATTACCAGCA
* * *
60811761 CCAGCACGAAGCCTGGGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
60811800 CCAGCACGAAGCCTACGGGACTTTAGCCCGAATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
60811839 CCAGAACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
60811878 CCAGCACGAAGCCTGCGGGACTCTAACCCGGATACA
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACA
60811914 ATCTCAGCAC
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 103 1.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.18
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:60812370 original size:30 final size:30
Alignment explanation
Indices: 60812334--60812393 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
60812324 GTCCCTATGT
60812334 GCTCTTAAGCTTAATTGAGTAAATTAAGTA
1 GCTCTTAAGCTTAATTGAGTAAATTAAGTA
60812364 GCTCTTAAGCTTAATTGAGTAAATTAAGTA
1 GCTCTTAAGCTTAATTGAGTAAATTAAGTA
60812394 TATCAACTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (30 bp):
GCTCTTAAGCTTAATTGAGTAAATTAAGTA
Found at i:60828685 original size:40 final size:40
Alignment explanation
Indices: 60828578--60828794 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
60828568 CGGATGATAA
* * *
60828578 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATA-T
* *
60828618 CCGGGCTAAG-CCCGAAGGCAATT-GTGCGAGTTATTATAC
1 CCGGGCTAAGTCCCGAAGGC-ATTCGTGCGAGTTACTATAT
* * *
60828657 CCGGGCTAATTCCCGAAGGCATTCGTGCGAGTTATTATGT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* *
60828697 TCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
* * *
60828737 CTGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTA-CTATAT
* *
60828777 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
60828795 TACTTGGCTT
Statistics
Matches: 151, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 46 0.30
40 105 0.70
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
Found at i:60834383 original size:40 final size:40
Alignment explanation
Indices: 60834282--60834537 Score: 353
Period size: 40 Copynumber: 6.5 Consensus size: 40
60834272 TGGATGATAA
* * *
60834282 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
60834322 CTGGGC-AAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
60834361 TCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
60834401 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTATAT
*
60834441 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
60834481 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
60834520 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
60834538 TACTTGGTTG
Statistics
Matches: 196, Mismatches: 15, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
38 18 0.09
39 42 0.21
40 134 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:60838185 original size:39 final size:40
Alignment explanation
Indices: 60838107--60838362 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
60838097 AAGCCAAGTA
* * * *
60838107 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
60838146 CCTTCGGGACATAGCCCGGATATAGTAACTCGCAC-AATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
60838185 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60838225 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
60838265 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
60838304 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
60838344 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60838363 TTATCATCCA
Statistics
Matches: 200, Mismatches: 11, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
39 91 0.46
40 108 0.54
41 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60838240 original size:79 final size:79
Alignment explanation
Indices: 60838107--60838362 Score: 360
Period size: 79 Copynumber: 3.2 Consensus size: 79
60838097 AAGCCAAGTA
* * * * *
60838107 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
60838170 GTAACTCGCACAATG
65 GTAACTCGCACAATG
*
60838185 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
60838250 TAACTCGCACAAATG
66 TAACTCGCAC-AATG
*
60838265 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GAAACTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
*
60838328 GTCACTAGCGCA-AATG
65 GTAACT--CGCACAATG
60838344 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60838363 TTATCATCCA
Statistics
Matches: 162, Mismatches: 9, Indels: 12
0.89 0.05 0.07
Matches are distributed among these distances:
78 16 0.10
79 120 0.74
80 22 0.14
81 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TAACTCGCACAATG
Found at i:60846523 original size:40 final size:40
Alignment explanation
Indices: 60846461--60846677 Score: 278
Period size: 40 Copynumber: 5.5 Consensus size: 40
60846451 AAGCCAAGTA
* * * * *
60846461 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
60846500 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
60846540 CCTTCGGGACTTAACCCGGGTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
60846580 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
60846620 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
60846660 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
60846678 ATTATCATCC
Statistics
Matches: 158, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.08
40 145 0.92
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:60849551 original size:12 final size:12
Alignment explanation
Indices: 60849536--60849564 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
60849526 TCTCATCCCA
60849536 AAATAGATACAG
1 AAATAGATACAG
60849548 AAATAGATACAG
1 AAATAGATACAG
60849560 AAATA
1 AAATA
60849565 ACATATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.62, C:0.07, G:0.14, T:0.17
Consensus pattern (12 bp):
AAATAGATACAG
Found at i:60852588 original size:30 final size:30
Alignment explanation
Indices: 60852554--60852614 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
60852544 TCCTTAACTC
60852554 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
60852584 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
60852614 A
1 A
60852615 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:60853877 original size:29 final size:29
Alignment explanation
Indices: 60853835--60853895 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
60853825 AAACCTTCAA
*
60853835 TGCTCACCATCTTCTCCTACACCACAAAT
1 TGCTCACCACCTTCTCCTACACCACAAAT
* * *
60853864 TGCTTACCACCTTCTCTTACACCATAAAT
1 TGCTCACCACCTTCTCCTACACCACAAAT
60853893 TGC
1 TGC
60853896 ATAAATTAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.26, C:0.38, G:0.05, T:0.31
Consensus pattern (29 bp):
TGCTCACCACCTTCTCCTACACCACAAAT
Found at i:60856232 original size:52 final size:51
Alignment explanation
Indices: 60856168--60856299 Score: 194
Period size: 50 Copynumber: 2.6 Consensus size: 51
60856158 ATGAACAAAT
* *
60856168 GAGTTACTTAATGCATGACTTAATTTAATGATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAAC-TTAACTAACATGA
* *
60856220 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAACTTAACTAACATGA
1 GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
* *
60856270 GAGTTACATAATGCATGACTTTATTAAATG
1 GAGTTACATAATGCATGACTTAATTTAATG
60856300 TAGAACACAT
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
50 34 0.48
51 14 0.20
52 23 0.32
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (51 bp):
GAGTTACATAATGCATGACTTAATTTAATGATGCAAACTTAACTAACATGA
Found at i:60861869 original size:19 final size:19
Alignment explanation
Indices: 60861845--60861882 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
60861835 TAGATAAAAT
60861845 AAAA-TTTAAATAATAGAAA
1 AAAATTTTAAATAAT-GAAA
60861864 AAAATTTTAAATAATGAAA
1 AAAATTTTAAATAATGAAA
60861883 TTGACAGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
AAAATTTTAAATAATGAAA
Found at i:60863545 original size:27 final size:27
Alignment explanation
Indices: 60863515--60863579 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
60863505 GGGCATAAAC
60863515 GTCATTCTAC-CATACAAGGGTATTACG
1 GTCATTCTACAC-TACAAGGGTATTACG
* *
60863542 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTCTACACTACAAGGGTATTACG
* *
60863569 GTAATTTTACA
1 GTCATTCTACA
60863580 AACTGGGGTC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTCTACACTACAAGGGTATTACG
Found at i:60869130 original size:27 final size:27
Alignment explanation
Indices: 60869100--60869155 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
60869090 GGGCATAAAC
60869100 GTCATTCTAC-CATACAAGGGTATTACG
1 GTCATTCTACAC-TACAAGGGTATTACG
* * *
60869127 GTCATTTTATACTACAAGGGTATTTCG
1 GTCATTCTACACTACAAGGGTATTACG
60869154 GT
1 GT
60869156 AATTTTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCATTCTACACTACAAGGGTATTACG
Found at i:60869160 original size:27 final size:27
Alignment explanation
Indices: 60869112--60869164 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
60869102 CATTCTACCA
*
60869112 TACAAGGGTATTACGGTCATTTTATAC
1 TACAAGGGTATTACGGTAATTTTATAC
*
60869139 TACAAGGGTATTTCGGTAATTTTATA
1 TACAAGGGTATTACGGTAATTTTATA
60869165 AACTGGGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (27 bp):
TACAAGGGTATTACGGTAATTTTATAC
Found at i:60870439 original size:25 final size:25
Alignment explanation
Indices: 60870421--60870504 Score: 87
Period size: 25 Copynumber: 3.2 Consensus size: 25
60870411 ACAACTAAAC
60870421 AAGTAATTCCTCATTACAAAAATCA
1 AAGTAATTCCTCATTACAAAAATCA
* **
60870446 AAGTAATTCCTAAAAACGTAGAAGAATCA
1 AAGTAATTCCTCATTAC--A-AA-AATCA
* *
60870475 AAGTAATTCCTCATTATAAACATCA
1 AAGTAATTCCTCATTACAAAAATCA
60870500 AAGTA
1 AAGTA
60870505 TCTTACCACT
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
25 23 0.49
26 2 0.04
27 2 0.04
28 2 0.04
29 18 0.38
ACGTcount: A:0.49, C:0.17, G:0.08, T:0.26
Consensus pattern (25 bp):
AAGTAATTCCTCATTACAAAAATCA
Found at i:60872608 original size:41 final size:41
Alignment explanation
Indices: 60872563--60872685 Score: 142
Period size: 40 Copynumber: 3.0 Consensus size: 41
60872553 AGTTATTATA
* *
60872563 ATCTTGCACACTAAGTGCC-TTTCACAGCCGAAGCTATCTCG
1 ATCTTGCACACTAAGTGCCATAT-ACAACCGAAGCTATCTCG
* * * *
60872604 ATCTTACACACTAAGTGCCATATATAACCGAAGTTATTTCG
1 ATCTTGCACACTAAGTGCCATATACAACCGAAGCTATCTCG
* * *
60872645 AT-ATGCACACTAAGTGCTATATATAACCGAAGCTATCTCG
1 ATCTTGCACACTAAGTGCCATATACAACCGAAGCTATCTCG
60872685 A
1 A
60872686 AACGAACACT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
40 34 0.49
41 34 0.49
42 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (41 bp):
ATCTTGCACACTAAGTGCCATATACAACCGAAGCTATCTCG
Found at i:60872667 original size:40 final size:40
Alignment explanation
Indices: 60872610--60872703 Score: 134
Period size: 40 Copynumber: 2.4 Consensus size: 40
60872600 CTCGATCTTA
* * * *
60872610 CACACTAAGTGCCATATATAACCGAAGTTATTTCGATATG
1 CACACTAAGTGCCATATATAACCGAAGCTATCTCGAAACG
*
60872650 CACACTAAGTGCTATATATAACCGAAGCTATCTCGAAACG
1 CACACTAAGTGCCATATATAACCGAAGCTATCTCGAAACG
*
60872690 AACACTAAGTGCCA
1 CACACTAAGTGCCA
60872704 AACATAGTCG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAACCGAAGCTATCTCGAAACG
Found at i:60874914 original size:16 final size:16
Alignment explanation
Indices: 60874889--60874930 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
60874879 ATTATAACTT
*
60874889 TATTCTATTTTAAACC
1 TATTCCATTTTAAACC
**
60874905 TATTCCATTTTATTCC
1 TATTCCATTTTAAACC
60874921 TATTCCATTT
1 TATTCCATTT
60874931 ATTTTAATCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTCCATTTTAAACC
Found at i:60874936 original size:20 final size:20
Alignment explanation
Indices: 60874911--60874950 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
60874901 AACCTATTCC
*
60874911 ATTTTATTCCTATTCCATTT
1 ATTTTAATCCTATTCCATTT
60874931 ATTTTAATCCTATTCCATTT
1 ATTTTAATCCTATTCCATTT
60874951 CAATGTGGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTTAATCCTATTCCATTT
Found at i:60880752 original size:11 final size:11
Alignment explanation
Indices: 60880736--60880764 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
60880726 TTGACAATAC
60880736 TCCAATCGTCT
1 TCCAATCGTCT
60880747 TCCAATCGTCT
1 TCCAATCGTCT
60880758 TCCAATC
1 TCCAATC
60880765 TTCACGAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.38, G:0.07, T:0.34
Consensus pattern (11 bp):
TCCAATCGTCT
Found at i:60881765 original size:27 final size:27
Alignment explanation
Indices: 60881728--60881781 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
60881718 ATATCAGTAA
60881728 AAATAAATTATTAATACCTCATACTAT
1 AAATAAATTATTAATACCTCATACTAT
60881755 AAATAAATTATTAATACCTCATACTAT
1 AAATAAATTATTAATACCTCATACTAT
60881782 TCATTTCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (27 bp):
AAATAAATTATTAATACCTCATACTAT
Found at i:60884121 original size:53 final size:53
Alignment explanation
Indices: 60884019--60884201 Score: 172
Period size: 53 Copynumber: 3.4 Consensus size: 53
60884009 AATACTTTAT
* * * * *
60884019 TTTACTAAAATTACTGAAATACCCCCAGTTGTAAAATTAC-CAAAGTACCCCCGG
1 TTTA-TAAAATTACTGAAATACCACAAGTTGTAAAATTACTGAAA-TACCCTCGA
* * *
60884073 TTTATAAAATTATTGAAATACCGACGA-TTGTAAAATTACTGAAATACCCTCAA
1 TTTATAAAATTACTGAAATACC-ACAAGTTGTAAAATTACTGAAATACCCTCGA
* * * * * *
60884126 TTTGTAAAATTACCGAAATACCCTCAATTTGCAAAATTATTGAAATACCCTCGA
1 TTTATAAAATTACTGAAATA-CCACAAGTTGTAAAATTACTGAAATACCCTCGA
* *
60884180 TTTGTAAAATTATTGAAATACC
1 TTTATAAAATTACTGAAATACC
60884202 CTTGTAGGGT
Statistics
Matches: 108, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
53 56 0.52
54 52 0.48
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (53 bp):
TTTATAAAATTACTGAAATACCACAAGTTGTAAAATTACTGAAATACCCTCGA
Found at i:60884203 original size:27 final size:27
Alignment explanation
Indices: 60884024--60884203 Score: 195
Period size: 27 Copynumber: 6.7 Consensus size: 27
60884014 TTTATTTTAC
* *
60884024 TAAAATTACTGAAATACCC-CCAGTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * * *
60884050 TAAAATTAC-CAAAGTACCCCCGGTTTA
1 TAAAATTACTGAAA-TACCCTCGATTTG
* **
60884077 TAAAATTATTGAAATACCGACGA-TTG
1 TAAAATTACTGAAATACCCTCGATTTG
*
60884103 TAAAATTACTGAAATACCCTCAATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
60884130 TAAAATTACCGAAATACCCTCAATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *
60884157 CAAAATTATTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
*
60884184 TAAAATTATTGAAATACCCT
1 TAAAATTACTGAAATACCCT
60884204 TGTAGGGTAG
Statistics
Matches: 129, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
25 3 0.02
26 35 0.27
27 88 0.68
28 3 0.02
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:60884252 original size:27 final size:27
Alignment explanation
Indices: 60884194--60884542 Score: 396
Period size: 27 Copynumber: 13.0 Consensus size: 27
60884184 TAAAATTATT
* *
60884194 GAAATACCCTTGTAGGGTAG-ATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60884220 AAAATACCACTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60884247 GAAATACACTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
60884274 GAAATACCCTTATAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
**
60884301 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60884328 AAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60884355 GAAATACCCCTGTAGGGTAGAACTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
60884382 AAAATACCTCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60884409 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60884436 GAAATACCCCTATAAGGTAG-ATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60884462 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
60884489 GAAATAACCTTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
60884516 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
60884543 ATTTTGCCCC
Statistics
Matches: 273, Mismatches: 48, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
26 40 0.15
27 233 0.85
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:60884813 original size:28 final size:27
Alignment explanation
Indices: 60884768--60884821 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
60884758 GAGGAAGCGT
60884768 TCTGGTGACTATGCCACAAATATCTGTA
1 TCTGGTGACTATGCCAC-AATATCTGTA
* *
60884796 TCTGGTGACTTTGTCACAATATCTGT
1 TCTGGTGACTATGCCACAATATCTGT
60884822 TGATCGATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (27 bp):
TCTGGTGACTATGCCACAATATCTGTA
Found at i:60885009 original size:98 final size:98
Alignment explanation
Indices: 60884873--60885063 Score: 301
Period size: 98 Copynumber: 1.9 Consensus size: 98
60884863 TGTGTGCCGT
* * *
60884873 TATTGTAGGCTTCGTGCTGATTATAGACCCGTTATCAATGGATGAGTGCCGATCATGTTATAGAA
1 TATTATAGGCTTCATGCCGATTATAGACCCGTTATCAATGGATGAGTGCCGATCATGTTATAGAA
60884938 GGCTGTGTGCCATTATTGTGGGATTCGTATCGA
66 GGCTGTGTGCCATTATTGTGGGATTCGTATCGA
* * * *
60884971 TATTATAGGCTTTATGCCGATTATAGACCCGTTATCAATGGCTGAGTGTCGATCATGTTATCGAA
1 TATTATAGGCTTCATGCCGATTATAGACCCGTTATCAATGGATGAGTGCCGATCATGTTATAGAA
* *
60885036 GGCTGTGTGCCGTTATTGTGGGCTTCGT
66 GGCTGTGTGCCATTATTGTGGGATTCGT
60885064 GCCGATTATA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 84 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (98 bp):
TATTATAGGCTTCATGCCGATTATAGACCCGTTATCAATGGATGAGTGCCGATCATGTTATAGAA
GGCTGTGTGCCATTATTGTGGGATTCGTATCGA
Found at i:60885133 original size:25 final size:26
Alignment explanation
Indices: 60885095--60885190 Score: 70
Period size: 27 Copynumber: 3.7 Consensus size: 26
60885085 GATGGCTTTG
*
60885095 TGCCAC-TTATTCTGTT-AAGTGGCTT
1 TGCCACATTA-TCTGTTCAAGTGGCTC
**
60885120 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACATTATCTG-TTCAAGTGGCTC
* * *
60885147 TGCCACAATATCTGTATCTAGTGACTC
1 TGCCACATTATCTGT-TCAAGTGGCTC
* * *
60885174 TGTCACAATATCAGTTC
1 TGCCACATTATCTGTTC
60885191 TGGCAGCCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
25 10 0.17
26 8 0.14
27 41 0.69
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.38
Consensus pattern (26 bp):
TGCCACATTATCTGTTCAAGTGGCTC
Found at i:60885174 original size:27 final size:27
Alignment explanation
Indices: 60885120--60885185 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
60885110 TAAGTGGCTT
* * *
60885120 TGCCACATTATCTGATTCTGGTGGCTC
1 TGCCACAATATCTGATTCTAGTGACTC
60885147 TGCCACAATATCTG-TATCTAGTGACTC
1 TGCCACAATATCTGAT-TCTAGTGACTC
*
60885174 TGTCACAATATC
1 TGCCACAATATC
60885186 AGTTCTGGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.03
27 33 0.97
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (27 bp):
TGCCACAATATCTGATTCTAGTGACTC
Found at i:60887385 original size:41 final size:39
Alignment explanation
Indices: 60887340--60887417 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 39
60887330 AATGAGTTAA
* *
60887340 TGCATGACTTAATTTAATGATTCAAACTTTAACTAACATAG
1 TGCATGACATAATTT-ATGATGCAAAC-TTAACTAACATAG
* *
60887381 TGCATGTCATAATTTATGATGCAAACTTAACTTACAT
1 TGCATGACATAATTTATGATGCAAACTTAACTAACAT
60887418 GAGAGTTACA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 10 0.30
40 10 0.30
41 13 0.39
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.37
Consensus pattern (39 bp):
TGCATGACATAATTTATGATGCAAACTTAACTAACATAG
Found at i:60887516 original size:39 final size:39
Alignment explanation
Indices: 60887457--60887531 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
60887447 ATGCAGAACA
*
60887457 CATATTAATGATGTTCAAACTATGACATAATTAAAGACT
1 CATACTAATGATGTTCAAACTATGACATAATTAAAGACT
60887496 CATACTAATGATGTTCAAACTATGACATAATTAAAG
1 CATACTAATGATGTTCAAACTATGACATAATTAAAG
60887532 GCACAAACTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (39 bp):
CATACTAATGATGTTCAAACTATGACATAATTAAAGACT
Done.