Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 182 of 345
Found at i:61487832 original size:40 final size:40
Alignment explanation
Indices: 61487594--61487818 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
61487584 TCGAATGATG
* * * *
61487594 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
61487634 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61487674 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61487713 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61487753 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61487794 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61487819 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61487840 original size:119 final size:119
Alignment explanation
Indices: 61487594--61487851 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
61487584 TCGAATGATG
* *
61487594 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
61487659 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
61487713 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
61487776 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
61487833 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
61487852 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:61493736 original size:1 final size:1
Alignment explanation
Indices: 61493730--61493780 Score: 93
Period size: 1 Copynumber: 51.0 Consensus size: 1
61493720 TCGTTAAATT
*
61493730 AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
61493781 TATTGAGGCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.98, C:0.00, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:61495898 original size:57 final size:57
Alignment explanation
Indices: 61495810--61495929 Score: 206
Period size: 57 Copynumber: 2.1 Consensus size: 57
61495800 ACAAGGGAAT
*
61495810 CATGGGCAAAACATGTCATGAAACATGTTGTG-TTAATGGAAAAAATAAAATAAGAAG
1 CATGGGAAAAACATGTCATGAAACATGTTGTGTTTAATGG-AAAAATAAAATAAGAAG
*
61495867 CATGGGAAAAACATGTCATGAAACATGTTGTGTTTAATGGAAGAATAAAATAAGAAG
1 CATGGGAAAAACATGTCATGAAACATGTTGTGTTTAATGGAAAAATAAAATAAGAAG
61495924 CATGGG
1 CATGGG
61495930 CAATAAACTA
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
57 53 0.88
58 7 0.12
ACGTcount: A:0.45, C:0.08, G:0.23, T:0.23
Consensus pattern (57 bp):
CATGGGAAAAACATGTCATGAAACATGTTGTGTTTAATGGAAAAATAAAATAAGAAG
Found at i:61497261 original size:40 final size:40
Alignment explanation
Indices: 61497209--61497340 Score: 198
Period size: 40 Copynumber: 3.3 Consensus size: 40
61497199 AGACTAAGAT
61497209 CGAAGGCATTTGTGCGAGTTACTAATCCGGGTTAAGTGCC
1 CGAAGGCATTTGTGCGAGTTACTAATCCGGGTTAAGTGCC
61497249 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGT-CC
1 CGAAGGCATTTGTGCGAGTTACT-AATCCGGGTTAAGTGCC
* *
61497289 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-A-TGACC
1 CGAAGGCATTTGTGCGAGTTACTA-ATCCGGGTTAAGTG-CC
61497329 CGAAGGCATTTG
1 CGAAGGCATTTG
61497341 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
38 1 0.01
39 2 0.02
40 69 0.80
41 14 0.16
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTAATCCGGGTTAAGTGCC
Found at i:61497347 original size:80 final size:79
Alignment explanation
Indices: 61497209--61497372 Score: 208
Period size: 80 Copynumber: 2.1 Consensus size: 79
61497199 AGACTAAGAT
* * **
61497209 CGAAGGCATTTGTGCGAGTTACTAATCCGGGTTAAGTGCCCGAAGGCATTTGTGCGAGTTA-CTA
1 CGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGTGCCCGAAGGCATTTGAACGAG-TAGCTA
*
61497273 AATCCGGGTTAAGTCC
65 AATCC-GGTTAAATCC
61497289 CGAAGGCATTTGTGCGAGTTACTATAACCGGGCT-A-TGACCCGAAGGCATTTGAACGAGTAGCT
1 CGAAGGCATTTGTGCGAGTTACTA-AACCGGGCTAAGTG-CCCGAAGGCATTTGAACGAGTAGCT
* *
61497352 ATATCCGGTTAAATTC
64 AAATCCGGTTAAATCC
61497368 CGAAG
1 CGAAG
61497373 TACGTGATTT
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
79 17 0.23
80 50 0.68
81 7 0.09
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
CGAAGGCATTTGTGCGAGTTACTAAACCGGGCTAAGTGCCCGAAGGCATTTGAACGAGTAGCTAA
ATCCGGTTAAATCC
Found at i:61499997 original size:15 final size:16
Alignment explanation
Indices: 61499979--61500008 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
61499969 ATTGTTTTAT
61499979 TACA-AATTTCACTTG
1 TACATAATTTCACTTG
61499994 TACATAATTTCACTT
1 TACATAATTTCACTT
61500009 ACTCCATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.33, C:0.20, G:0.03, T:0.43
Consensus pattern (16 bp):
TACATAATTTCACTTG
Found at i:61504785 original size:42 final size:41
Alignment explanation
Indices: 61504678--61504797 Score: 100
Period size: 43 Copynumber: 2.9 Consensus size: 41
61504668 GTCTGAGACA
* * *
61504678 TCGTTTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGATT-AGATT
* *
61504720 TACGTATAAGATCATGTTTGGGACATC-GGCATCGTATCT-GATT
1 T-CGTATAAGACCATGTCTGGGACA-CAGGCATCG-AT-TAGATT
* * * *
61504763 TCGTGTAAGACCCTGTCTGGGACAGAGACATCGAT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGAT
61504798 ATTGACTTAC
Statistics
Matches: 62, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
41 2 0.03
42 26 0.42
43 30 0.48
44 3 0.05
45 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (41 bp):
TCGTATAAGACCATGTCTGGGACACAGGCATCGATTAGATT
Found at i:61505437 original size:56 final size:56
Alignment explanation
Indices: 61505372--61505488 Score: 225
Period size: 56 Copynumber: 2.1 Consensus size: 56
61505362 AAGGGATCAT
61505372 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
*
61505428 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
61505484 GGCAA
1 GGCAA
61505489 TAAACTAATA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.22
Consensus pattern (56 bp):
GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
Found at i:61507052 original size:40 final size:40
Alignment explanation
Indices: 61506909--61507090 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
61506899 TCGAATGATG
* * * *
61506909 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
61506949 TCC-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
61506987 TCCGGG-TAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
61507025 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61507066 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61507091 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
37 24 0.19
38 16 0.13
39 24 0.19
40 59 0.47
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61507108 original size:80 final size:76
Alignment explanation
Indices: 61506961--61507123 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 76
61506951 CGACTAAGAT
* **
61506961 CCGAAGGCATTTGTGCGAGTTACTAATCCGGGTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGAAGGCATTTGTGCGAGTTACTAAACCGGGTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
*
61507026 CCGGGTTAAGTC
66 CC-GGTTAAATC
* *
61507038 CCGAAGGCATTTGTGTGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AACCGGG-TAAG-CCCGAAGGCATTTGAACGAGTTA-CT
* *
61507102 ATATCCGGTTAAATT
62 AAATCCGGTTAAATC
61507117 CCGAAGG
1 CCGAAGG
61507124 TACGTGTTTG
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
77 24 0.32
78 6 0.08
79 19 0.26
80 25 0.34
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (76 bp):
CCGAAGGCATTTGTGCGAGTTACTAAACCGGGTAAGCCCGAAGGCATTTGAACGAGTTACTAAAT
CCGGTTAAATC
Found at i:61512906 original size:56 final size:56
Alignment explanation
Indices: 61512820--61512939 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
61512810 ACAAGGGATG
61512820 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
61512876 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
61512932 ATGGGCAA
1 ATGGGCAA
61512940 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:61514148 original size:39 final size:39
Alignment explanation
Indices: 61514065--61514278 Score: 224
Period size: 39 Copynumber: 5.6 Consensus size: 39
61514055 ATGATGTCCG
** * * *
61514065 GGCTAAGTCCCGAAGGC-TTTGT-TAAGTGACCATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
61514102 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
61514142 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* * *
61514180 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTAAATCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
* *
61514219 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
* *
61514258 GGCTATGACCC-AAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
61514279 AACGAGTAGC
Statistics
Matches: 152, Mismatches: 18, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
37 2 0.01
38 56 0.37
39 82 0.54
40 12 0.08
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:61514274 original size:77 final size:78
Alignment explanation
Indices: 61514098--61514311 Score: 236
Period size: 77 Copynumber: 2.8 Consensus size: 78
61514088 AAGTGACCAT
* * * * *
61514098 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGCTAAG-CCCGAAGGCATTG
1 ATCCGG-CTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAATCCGGTTAAGTCCCGAAGGCATTG
61514162 GTGCGAGTTACTAA
65 GTGCGAGTTACTAA
* * * *
61514176 ATCCGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGCTAAATCGGGTTAAGTCCCGAAGGCATTTG
1 ATCCGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAATCCGGTTAAGTCCCGAAGGCATTGG
61514241 TGCGAGTTACTATA
66 TGCGAGTTACTA-A
* * ** * * * *
61514255 A-CGGGCTATGACCC-AAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 ATCCGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAATCCGGTTAAGTCCCGAAGG
61514312 TACGTGATTT
Statistics
Matches: 114, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
77 72 0.63
78 40 0.35
79 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
ATCCGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTAAATCCGGTTAAGTCCCGAAGGCATTGG
TGCGAGTTACTAA
Found at i:61525615 original size:50 final size:50
Alignment explanation
Indices: 61525540--61525651 Score: 206
Period size: 50 Copynumber: 2.2 Consensus size: 50
61525530 TAAATGACCA
61525540 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTCATCT
1 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTCATCT
*
61525590 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTGATCT
1 TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTCATCT
*
61525640 TGTGTATTCGGC
1 TGTATATTCGGC
61525652 TAAATGAGTG
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.24, C:0.13, G:0.21, T:0.42
Consensus pattern (50 bp):
TGTATATTCGGCCACATAGGTATGTACATATGTGATGTTATATTTCATCT
Found at i:61539744 original size:24 final size:24
Alignment explanation
Indices: 61539680--61539773 Score: 131
Period size: 23 Copynumber: 4.0 Consensus size: 24
61539670 GCTTTATCAT
*
61539680 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
61539705 ATAACTGGGG-AAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
61539728 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
61539751 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
61539774 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
23 39 0.62
24 16 0.25
25 8 0.13
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:61539849 original size:20 final size:20
Alignment explanation
Indices: 61539824--61539862 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
61539814 TATGAATACA
61539824 TCATGTGCATAGCATACATG
1 TCATGTGCATAGCATACATG
*
61539844 TCATGTGCATATCATACAT
1 TCATGTGCATAGCATACAT
61539863 ACCATGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (20 bp):
TCATGTGCATAGCATACATG
Found at i:61539868 original size:20 final size:20
Alignment explanation
Indices: 61539825--61539869 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
61539815 ATGAATACAT
**
61539825 CATGTGCATAGCATACATGT
1 CATGTGCATAGCATACATAC
*
61539845 CATGTGCATATCATACATAC
1 CATGTGCATAGCATACATAC
61539865 CATGT
1 CATGT
61539870 TTACTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (20 bp):
CATGTGCATAGCATACATAC
Found at i:61544822 original size:23 final size:23
Alignment explanation
Indices: 61544793--61544838 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
61544783 TAAAGTATAC
61544793 CTATAAGCATAAATGTGATTTTG
1 CTATAAGCATAAATGTGATTTTG
61544816 CTATAAGCATAAATGTGATTTTG
1 CTATAAGCATAAATGTGATTTTG
61544839 GTAAGTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (23 bp):
CTATAAGCATAAATGTGATTTTG
Found at i:61546446 original size:22 final size:23
Alignment explanation
Indices: 61546410--61546454 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
61546400 AGGTAGAAGA
61546410 TAGGCTCAAACAGAGGTTCAAGG
1 TAGGCTCAAACAGAGGTTCAAGG
61546433 TAGGCTC-AACAGAGGTTCAAGG
1 TAGGCTCAAACAGAGGTTCAAGG
61546455 AATGTTTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.18
Consensus pattern (23 bp):
TAGGCTCAAACAGAGGTTCAAGG
Found at i:61546581 original size:18 final size:18
Alignment explanation
Indices: 61546543--61546582 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
61546533 TTAAAAGCAC
***
61546543 TTAGTTGGATAATTTGGT
1 TTAGTTGGATAATTCAAT
61546561 TTAGTTGGATAATTCAAT
1 TTAGTTGGATAATTCAAT
61546579 TTAG
1 TTAG
61546583 GAAACAACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.28, C:0.03, G:0.23, T:0.47
Consensus pattern (18 bp):
TTAGTTGGATAATTCAAT
Found at i:61547462 original size:27 final size:28
Alignment explanation
Indices: 61547410--61547464 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
61547400 AGCTCAATTA
**
61547410 GGTTGTTTAAGTCTAAGACACTTTAAAT
1 GGTTGTTTAAGTCTAAGACAAATTAAAT
*
61547438 GGTTGTTTGAG-CTAAGACAAATTAAAT
1 GGTTGTTTAAGTCTAAGACAAATTAAAT
61547465 AGATTTTAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 14 0.58
28 10 0.42
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (28 bp):
GGTTGTTTAAGTCTAAGACAAATTAAAT
Found at i:61553109 original size:40 final size:40
Alignment explanation
Indices: 61553055--61553172 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
61553045 CGGATGTAAC
* *
61553055 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
61553095 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
61553135 AACCCGCACGAATGCCTTCGGGACTTAACCCGGGTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
61553173 TTTTTTTTCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:61559714 original size:40 final size:40
Alignment explanation
Indices: 61559616--61559878 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
61559606 TCCTCGTTCA
* * * * *
61559616 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
61559655 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
61559695 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
61559735 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
61559775 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
61559815 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
61559855 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
61559879 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:61567216 original size:40 final size:40
Alignment explanation
Indices: 61567118--61567380 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
61567108 TCCTCGTTCA
* * * * *
61567118 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
61567157 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
61567197 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
61567237 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
61567277 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
61567317 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
61567357 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
61567381 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:61570953 original size:40 final size:40
Alignment explanation
Indices: 61570909--61571091 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
61570899 GCTACTCATT
*
61570909 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
61570949 CAAATGCCTTCGGGACTTAACCCAGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGTTATAGTAACTCGCA
* *
61570989 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * *
61571028 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
61571069 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
61571092 ACATCATTCG
Statistics
Matches: 122, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
38 3 0.02
39 29 0.24
40 75 0.61
41 15 0.12
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:61571077 original size:79 final size:80
Alignment explanation
Indices: 61570909--61571091 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
61570899 GCTACTCATT
* *
61570909 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAA-GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
* *
61570974 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
* ** *
61570990 CAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAAGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCA
*
61571052 GATATAGTCACTTAGCA-
64 GATATAGTAAC-TAGCAC
61571069 CAAAGCCTTCGGGACTTAGCCCG
1 CAAAGCCTTCGGGACTTAGCCCG
61571092 ACATCATTCG
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
78 4 0.05
79 59 0.67
80 22 0.25
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
TATAGTAACTAGCAC
Found at i:61578076 original size:79 final size:81
Alignment explanation
Indices: 61577963--61578145 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
61577953 TACTCGTTCA
* *
61577963 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
61578026 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
61578043 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
61578106 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
61578122 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
61578146 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:61578145 original size:40 final size:40
Alignment explanation
Indices: 61577942--61578145 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
61577932 TCGAATTTAA
** *
61577942 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
61577982 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
61578022 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
61578061 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
61578101 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
61578141 CCGGA
1 CCGGA
61578146 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:61579238 original size:56 final size:56
Alignment explanation
Indices: 61579152--61579271 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
61579142 ACAAGGGATG
*
61579152 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGTAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
61579208 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
61579264 ATGGGCAA
1 ATGGGCAA
61579272 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.43, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:61580482 original size:40 final size:39
Alignment explanation
Indices: 61580398--61580621 Score: 274
Period size: 40 Copynumber: 5.7 Consensus size: 39
61580388 TCGAATGATG
* * *
61580398 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-A
* *
61580438 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
*
61580477 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
61580516 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AA
*
61580556 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
61580596 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61580622 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 10 0.06
39 49 0.30
40 95 0.59
41 8 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:61580643 original size:118 final size:118
Alignment explanation
Indices: 61580398--61580628 Score: 288
Period size: 118 Copynumber: 1.9 Consensus size: 118
61580388 TCGAATGATG
* *
61580398 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
61580463 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
* * * **
61580516 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
61580579 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGT
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGT
61580629 AGCTATATCG
Statistics
Matches: 96, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
117 3 0.03
118 69 0.72
119 24 0.25
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
Found at i:61587149 original size:57 final size:56
Alignment explanation
Indices: 61587082--61587202 Score: 224
Period size: 57 Copynumber: 2.1 Consensus size: 56
61587072 ACAAGGGATG
*
61587082 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAGAATAAAATAATAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGG-AAGAATAAAATAAGAAGC
61587139 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
61587195 ATGGGCAA
1 ATGGGCAA
61587203 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 25 0.40
57 38 0.60
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:61588569 original size:40 final size:40
Alignment explanation
Indices: 61588331--61588555 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
61588321 TCGAATGATG
* * * *
61588331 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
61588371 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61588411 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61588450 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
61588490 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
61588531 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
61588556 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:61588577 original size:119 final size:119
Alignment explanation
Indices: 61588331--61588588 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
61588321 TCGAATGATG
* *
61588331 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
61588396 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
61588450 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
61588513 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
61588570 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
61588589 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:61593004 original size:40 final size:40
Alignment explanation
Indices: 61592949--61593096 Score: 242
Period size: 40 Copynumber: 3.7 Consensus size: 40
61592939 AACCAGTACA
*
61592949 AATGCCTTTGGGACTTAACCCGGTTATAATAACCCACACG
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
* *
61592989 AATGCCTTCAGGACTTAACCCGATTATAATAACCCACACG
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
* * *
61593029 AATTCCTTCGGGACTTAACCCGGTTATAATAGCCCGCACG
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
61593069 AATGCCTTCGGGACTTAACCCGGTTATA
1 AATGCCTTCGGGACTTAACCCGGTTATA
61593097 TTTTTTTTTC
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 99 1.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
Found at i:61597922 original size:47 final size:47
Alignment explanation
Indices: 61597852--61597967 Score: 196
Period size: 47 Copynumber: 2.5 Consensus size: 47
61597842 TCCATAAGTG
*
61597852 AACTCAGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
* *
61597899 AACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCACA
1 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
*
61597946 AACTCGAACTCAACTCAACGAG
1 AACTCGGACTCAACTCAACGAG
61597968 TTCAGGATTC
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.34, C:0.31, G:0.15, T:0.21
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGCTCGGATGCCTAATTACATCTCACA
Found at i:61600789 original size:67 final size:67
Alignment explanation
Indices: 61600650--61600827 Score: 168
Period size: 70 Copynumber: 2.6 Consensus size: 67
61600640 ACCACCCATT
* * *
61600650 TGACCTAGCCA-ATTTATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACA
1 TGACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACA
61600714 TG
66 TG
** *
61600716 CCACCTAGCTACATTTATCTCTCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-T-GTATCA
1 TGACCTAGCTACATTTA--TCT-CGTAGCTCTCTTGTCTACATGGTG-TACATCACTTGGAATCA
61600777 CACATG
62 CACATG
* * *
61600783 TGACCTAGCTACTACATAGTATCTCGTATCTCTCTTGTATACATG
1 TGACCTAG---CTACAT-TTATCTCGTAGCTCTCTTGTCTACATG
61600828 ATGTGCACTT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
66 8 0.09
67 22 0.24
68 20 0.22
69 8 0.09
70 32 0.35
71 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.35
Consensus pattern (67 bp):
TGACCTAGCTACATTTATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACA
TG
Found at i:61611356 original size:22 final size:23
Alignment explanation
Indices: 61611311--61611358 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
61611301 CAATTAAGAG
** *
61611311 AAAAAGAAAAGAATGGATGTGAA
1 AAAAAGAAAAGAATAAATGAGAA
61611334 AAAAAGAAAAGAA-AAATGAGAA
1 AAAAAGAAAAGAATAAATGAGAA
61611356 AAA
1 AAA
61611359 TAACACAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (23 bp):
AAAAAGAAAAGAATAAATGAGAA
Found at i:61614448 original size:20 final size:20
Alignment explanation
Indices: 61614432--61614484 Score: 79
Period size: 21 Copynumber: 2.6 Consensus size: 20
61614422 ACCAGCTCAC
61614432 TTGAGCTCATTTTAGCTCGT
1 TTGAGCTCATTTTAGCTCGT
*
61614452 TTGAGCTTGATTTTAGCTCGT
1 TTGAGC-TCATTTTAGCTCGT
*
61614473 TTCAGCTCATTT
1 TTGAGCTCATTT
61614485 CTTTTACATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.47
Consensus pattern (20 bp):
TTGAGCTCATTTTAGCTCGT
Found at i:61616461 original size:20 final size:21
Alignment explanation
Indices: 61616428--61616467 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
61616418 AGCTTAATGG
*
61616428 AGCTCAATTCAGCTTGATTCT
1 AGCTCAATTCAGCTCGATTCT
*
61616449 AGCTC-ATTGAGCTCGATTC
1 AGCTCAATTCAGCTCGATTC
61616468 CATTATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (21 bp):
AGCTCAATTCAGCTCGATTCT
Found at i:61619096 original size:50 final size:51
Alignment explanation
Indices: 61618971--61619385 Score: 464
Period size: 50 Copynumber: 8.2 Consensus size: 51
61618961 ACCGAAGCTC
* * * * *
61618971 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCAA
** * * *
61619022 TCTGGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAA-CAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCAA
*
61619072 TCTGGTACACGTGGTAGCCTGCACTTAGTACTACACACGTGACCTAAGC-A
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCAA
* * *
61619122 TC-GGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTA
1 TCTGG-TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCAA
* * * * * * *
61619173 TCGGGTACGCATAGTAGCTTGCAGTTAGTACTACACATGTAACCTAA-CAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCAA
* *
61619223 TCTGGTACACGTAGTAGACTGCACTTAGTACTACACACGTGACCTAA-CCA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCAA
* * * * * *
61619273 TCTGATACACGTAGTAGCCTACACTTAGTACTACAGACGTGATCGAAGCTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCAA
* * * * * *
61619324 TCGGGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCTAA-CAA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCAA
61619374 TCTGGTACACGT
1 TCTGGTACACGT
61619386 GACCTAAAAC
Statistics
Matches: 304, Mismatches: 55, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
49 2 0.01
50 182 0.60
51 118 0.39
52 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (51 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCAA
Found at i:61619180 original size:101 final size:102
Alignment explanation
Indices: 61618971--61619385 Score: 475
Period size: 101 Copynumber: 4.1 Consensus size: 102
61618961 ACCGAAGCTC
* * * *
61618971 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCTGGTATGCA--T
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGG-ATACACGT
* *
61619034 AGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
65 AGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* *
61619072 TCTGGTACACGTGGTAGCCTGCACTTAGTACTACACACGTGACCTAAGC-ATC-GGATACACGTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGGATACACGTA
* * *
61619135 GTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTA
66 GTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
* * * * * * * * *
61619173 TCGGGTACGCATAGTAGCTTGCAGTTAGTACTACACATGTAACCTAA-CAATCTGG-TACACGTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGGATACACGTA
* *
61619236 GTAGACTGCACTTAGTACTACACACGTGACCTAACCA
66 GTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * * * * *
61619273 TCTGATACACGTAGTAGCCTACACTTAGTACTACAGACGTGATCGAAGCTATC-GGGTACGCATA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGGATACACGTA
* * *
61619337 ATAGCCTGCACTTAGTACTACACATGCGACCTAACAA
66 GTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
61619374 TCTGGTACACGT
1 TCTGGTACACGT
61619386 GACCTAAAAC
Statistics
Matches: 263, Mismatches: 44, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
98 4 0.02
99 2 0.01
100 75 0.29
101 180 0.68
102 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (102 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCGAAGCTATCTGGATACACGTA
GTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:61619256 original size:151 final size:151
Alignment explanation
Indices: 61618982--61619385 Score: 691
Period size: 151 Copynumber: 2.7 Consensus size: 151
61618972 CTGGTACGCA
* *
61618982 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCTGGTATGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
* *
61619047 TAGTACTACACATGCGACCTAACAATCTGGTACACGTGGTAGCCTGCACTTAGTACTACACACGT
66 TAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGACTGCACTTAGTACTACACACGT
*
61619112 GACCTAAGCATCGGATACACG
131 GACCTAACCATCGGATACACG
* *
61619133 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCTTGCAGT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
**
61619198 TAGTACTACACATGTAACCTAACAATCTGGTACACGTAGTAGACTGCACTTAGTACTACACACGT
66 TAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGACTGCACTTAGTACTACACACGT
*
61619263 GACCTAACCATCTGATACACG
131 GACCTAACCATCGGATACACG
* * *
61619284 TAGTAGCCTACACTTAGTACTACAGACGTGATCGAAGCTATCGGGTACGCATAATAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
61619349 TAGTACTACACATGCGACCTAACAATCTGGTACACGT
66 TAGTACTACACATGCGACCTAACAATCTGGTACACGT
61619386 GACCTAAAAC
Statistics
Matches: 236, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 236 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (151 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTATCGGGTACGCATAGTAGCCTGCACT
TAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGACTGCACTTAGTACTACACACGT
GACCTAACCATCGGATACACG
Found at i:61621437 original size:18 final size:18
Alignment explanation
Indices: 61621403--61621444 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
61621393 ACAGAATGAT
* *
61621403 TGACTGTTATTGAATAAG
1 TGACTGTTATTCAATAAC
*
61621421 TGACTGTTATTCCATAAC
1 TGACTGTTATTCAATAAC
61621439 TGACTG
1 TGACTG
61621445 CTATAGAGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (18 bp):
TGACTGTTATTCAATAAC
Found at i:61622707 original size:6 final size:6
Alignment explanation
Indices: 61622698--61622779 Score: 78
Period size: 6 Copynumber: 13.3 Consensus size: 6
61622688 TATTAGAACT
* *
61622698 AGAATC AGAATC AGAATC AGAATT AG-TTGAC AGAATC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
61622747 AGTATC AGGTAA-C AGAATC AAAATC AGAATC AG
1 AGAATC A-G-AATC AGAATC AGAATC AGAATC AG
61622780 TATCGGGTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 12
0.76 0.10 0.15
Matches are distributed among these distances:
5 3 0.05
6 52 0.84
7 5 0.08
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:61622736 original size:31 final size:31
Alignment explanation
Indices: 61622698--61622808 Score: 141
Period size: 31 Copynumber: 3.5 Consensus size: 31
61622688 TATTAGAACT
* * *
61622698 AGAATCAGAATCAGAATCAGAATTAGTTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
61622729 AGAATCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
61622760 AGAATCAAAATCAGAATCAGTATCGGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
61622791 AGAATCAAAAATCAGAAT
1 AGAATC-AGAATCAGAAT
61622809 GTGAATGCAA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
31 62 0.85
32 11 0.15
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:61622987 original size:27 final size:26
Alignment explanation
Indices: 61622945--61623046 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 26
61622935 GCTCAGTTAT
* **
61622945 CAGATATTGTGACAGAGTTACCAAATA
1 CAGATATTGTGGCAGAGCCACCAAA-A
*
61622972 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAAAA
* *
61622998 CAGATATTTGTGGCATAGCCACACGAAA
1 CAGATA-TTGTGGCAGAGCCAC-CAAAA
* * * *
61623026 CAAATAATGCGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
61623047 TTAACAGAAT
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.11
27 47 0.76
28 8 0.13
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAAAA
Found at i:61623226 original size:22 final size:21
Alignment explanation
Indices: 61623198--61623262 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 21
61623188 GCAAATACGT
61623198 TTGGCACATAGCCATAATCAGG
1 TTGGCACA-AGCCATAATCAGG
*
61623220 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AGCCATAAT-CAGG
*
61623242 TTGACACCAAGCCATAATCAG
1 TTGGCA-CAAGCCATAATCAG
61623263 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 2 0.06
22 30 0.83
23 4 0.11
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (21 bp):
TTGGCACAAGCCATAATCAGG
Found at i:61623828 original size:81 final size:81
Alignment explanation
Indices: 61623707--61623957 Score: 378
Period size: 81 Copynumber: 3.1 Consensus size: 81
61623697 TACCCCACAA
* * * * *
61623707 GGTATCTCAGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTACCCTACAGAGGTATTGCGAT
1 GGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAGAGGTATTTCGAT
*
61623772 AATTCTACCCTATAGG
66 AATTCTACCCTACAGG
* * *
61623788 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACGCTACAGAGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAGAGGTATTTCGAT
61623853 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
* *
61623869 GGTATTTCGGTAATTGTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTC-AG
1 GGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAGAGGTATTTCGA-
*
61623933 TAATTCTACCCCACAGG
65 TAATTCTACCCTACAGG
61623950 GGTATTTC
1 GGTATTTC
61623958 AAGAATTTCA
Statistics
Matches: 154, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
81 154 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAGAGGTATTTCGAT
AATTCTACCCTACAGG
Found at i:61623958 original size:27 final size:27
Alignment explanation
Indices: 61623689--61623957 Score: 342
Period size: 27 Copynumber: 10.0 Consensus size: 27
61623679 GGGGAAAAAT
* * * *
61623689 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
61623715 AGTAATTCCACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61623742 AGTAATTCTACCCTACAGAGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61623769 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
61623796 GGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61623823 GGTAATTCTACGCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61623850 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
61623877 GGTAATTGTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
61623904 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
61623931 AGTAATTCTACCCCACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
61623958 AAGAATTTCA
Statistics
Matches: 208, Mismatches: 34, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
26 12 0.06
27 196 0.94
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:61624003 original size:27 final size:27
Alignment explanation
Indices: 61623972--61624112 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 27
61623962 ATTTCACAAC
*
61623972 CGAGGGTAAAACGGTAATTTTGTAAA-
1 CGAGGGTAAAACGGTAATTTTATAAAT
*
61623998 CTGAGGGTAAAATGGTAATTTTATAAAT
1 C-GAGGGTAAAACGGTAATTTTATAAAT
*
61624026 CGAGGGTAAAACGGTAATTTTGTAAAT
1 CGAGGGTAAAACGGTAATTTTATAAAT
* * *
61624053 CAAGGGTGAAACGGTAATTCTATAAAT
1 CGAGGGTAAAACGGTAATTTTATAAAT
* * * *
61624080 TGAGGGTAAAATGGTAATTCTACAAAT
1 CGAGGGTAAAACGGTAATTTTATAAAT
*
61624107 AGAGGG
1 CGAGGG
61624113 CATTTCAGTA
Statistics
Matches: 99, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 97 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (27 bp):
CGAGGGTAAAACGGTAATTTTATAAAT
Found at i:61624041 original size:54 final size:54
Alignment explanation
Indices: 61623972--61624098 Score: 184
Period size: 54 Copynumber: 2.4 Consensus size: 54
61623962 ATTTCACAAC
* * *
61623972 CGAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTATAAAT
1 CGAGGGTAAAACGGTAATTTTGTAAATC-AAGGGTAAAACGGTAATTCTATAAAT
*
61624026 CGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTGAAACGGTAATTCTATAAAT
1 CGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAAT
* *
61624080 TGAGGGTAAAATGGTAATT
1 CGAGGGTAAAACGGTAATT
61624099 CTACAAATAG
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 65 0.98
55 1 0.02
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (54 bp):
CGAGGGTAAAACGGTAATTTTGTAAATCAAGGGTAAAACGGTAATTCTATAAAT
Found at i:61624124 original size:81 final size:81
Alignment explanation
Indices: 61623974--61624132 Score: 201
Period size: 81 Copynumber: 2.0 Consensus size: 81
61623964 TTCACAACCG
* * * * * * *
61623974 AGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
1 AGGGTAAAACGGTAATTCTATAAACTGAGGGTAAAATGGTAATTCTACAAATAGAGGGCAAAACA
*
61624039 GTAATTTTGTAAATCA
66 GTAATTTGGTAAATCA
* * ***
61624055 AGGGTGAAACGGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTACAAATAGAGGGCATTTCA
1 AGGGTAAAACGGTAATTCTATAAACTGAGGGTAAAATGGTAATTCTACAAATAGAGGGCAAAACA
61624120 GTAATTTGGTAAA
66 GTAATTTGGTAAA
61624133 CTAAAGTATT
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 65 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (81 bp):
AGGGTAAAACGGTAATTCTATAAACTGAGGGTAAAATGGTAATTCTACAAATAGAGGGCAAAACA
GTAATTTGGTAAATCA
Found at i:61624204 original size:28 final size:28
Alignment explanation
Indices: 61624164--61624228 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
61624154 TAACAATGCG
* *
61624164 AATGGTCCCAAAGCCTATTCTCGGCCCA
1 AATGGGCCCAAAGCCTATTCTCAGCCCA
61624192 AATGGGCCCAAAGCCTATTCTCAGCCCA
1 AATGGGCCCAAAGCCTATTCTCAGCCCA
61624220 AATGGGCCC
1 AATGGGCCC
61624229 GCACGCTCGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.26, C:0.35, G:0.20, T:0.18
Consensus pattern (28 bp):
AATGGGCCCAAAGCCTATTCTCAGCCCA
Found at i:61637876 original size:43 final size:42
Alignment explanation
Indices: 61637823--61637932 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
61637813 CATCGTGTAC
* *
61637823 GACCGTGTCTGGGACATAGGCCTCG-AT-TGAGATTTACGTATAA
1 GACCATGTCTGGGACATAGGCATCGTATCT--GATTT-CGTATAA
* * *
61637866 GACCATGTCTGGGACATCGGCATCGTATCTGATTTCGTGTAT
1 GACCATGTCTGGGACATAGGCATCGTATCTGATTTCGTATAA
* *
61637908 GACCATGTCTGGGATAGAGGCATCG
1 GACCATGTCTGGGACATAGGCATCG
61637933 ATATTGAATT
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
42 27 0.47
43 27 0.47
44 2 0.04
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (42 bp):
GACCATGTCTGGGACATAGGCATCGTATCTGATTTCGTATAA
Found at i:61641473 original size:27 final size:26
Alignment explanation
Indices: 61641417--61641473 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
61641407 CAACCTTAAC
* * *
61641417 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
61641443 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
61641470 CCTA
1 CCTA
61641474 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:61643904 original size:33 final size:32
Alignment explanation
Indices: 61643853--61643916 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
61643843 ATGAAGTCAC
* *
61643853 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
61643885 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
61643917 TTACAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:61654757 original size:46 final size:47
Alignment explanation
Indices: 61654648--61654761 Score: 131
Period size: 50 Copynumber: 2.4 Consensus size: 47
61654638 TGTCTTCAAC
** * *
61654648 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* * *
61654698 ATGGGCTTTCATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
61654744 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
61654762 CTTTTGTCCT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 26 0.47
50 29 0.53
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:61657654 original size:27 final size:26
Alignment explanation
Indices: 61657606--61657665 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
61657596 GTGAGGCTAC
*
61657606 CAGATATTGTGACGAAGTCACCAAATA
1 CAGATATTGTGACGAAGACACCAAA-A
* * * *
61657633 CAGATATTGTGGCTAGGACACCAGAA
1 CAGATATTGTGACGAAGACACCAAAA
61657659 CAGATAT
1 CAGATAT
61657666 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAAAA
Found at i:61660828 original size:65 final size:65
Alignment explanation
Indices: 61660722--61660852 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
61660712 AGTCCTATGC
61660722 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
* *
61660787 ATCAGATAATAATAACATGGCATGTAGTAAATAGTACCAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
61660852 A
1 A
61660853 ACCCTAAGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:61665765 original size:50 final size:50
Alignment explanation
Indices: 61665690--61666051 Score: 397
Period size: 50 Copynumber: 7.2 Consensus size: 50
61665680 ACCGAAGCTC
* * *
61665690 TCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * *
61665740 TCTGGTACACGTAGTAACCTGCACTTAGTACTACACATGTAACCTAACCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * *
61665791 --TGGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGCTA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* * * *
61665841 TCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* ** * *
61665891 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTATCCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
* * * * * *
61665941 TCAT-ATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCTA
1 TC-TGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAA
* ** *
61665992 TCAGGTATGCATAGTAGCTTGCACTTAGTACTACACATGTGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
61666042 TCTGGTACAC
1 TCTGGTACAC
61666052 GTGACCTAAA
Statistics
Matches: 255, Mismatches: 50, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
49 3 0.01
50 171 0.67
51 79 0.31
52 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA
Found at i:61665781 original size:25 final size:26
Alignment explanation
Indices: 61665745--61665826 Score: 80
Period size: 25 Copynumber: 3.2 Consensus size: 26
61665735 AACAATCTGG
*
61665745 TACACGTAGTAACCTGCACTTAGTAC
1 TACACATAGTAACCTGCACTTAGTAC
* ** *
61665771 TACACAT-GTAACCT-AACCAATGGA-
1 TACACATAGTAACCTGCACTTA-GTAC
*
61665795 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAACCTGCACTTAGTAC
61665821 TACACA
1 TACACA
61665827 CGTGATCAAA
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
24 10 0.24
25 17 0.40
26 15 0.36
ACGTcount: A:0.35, C:0.27, G:0.13, T:0.24
Consensus pattern (26 bp):
TACACATAGTAACCTGCACTTAGTAC
Found at i:61665936 original size:151 final size:150
Alignment explanation
Indices: 61665684--61666053 Score: 580
Period size: 151 Copynumber: 2.5 Consensus size: 150
61665674 CTTGTAACCG
* *
61665684 AAGCTCTCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
**
61665749 CGTAGTAACCTGCACTTAGTACTACACATGTAACCTAACCA-ATGGATACACATAGTAGCCTGCA
66 CGTAGTAACCTGCACTTAGTACTACACACATAACCTAACCACAT--ATACACATAGTAGCCTGCA
61665813 CTTAGTACTACACACGTGATCA
129 CTTAGTACTACACACGTGATCA
* * *
61665835 AAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTACA
1 AAGCTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
* * * *
61665900 CGTAGTAGCCTGCACTTAGTACTACACACATGACCTATCCATCATATACACGTAGTAGCCTGCAC
66 CGTAGTAACCTGCACTTAGTACTACACACATAACCTAACCA-CATATACACATAGTAGCCTGCAC
*
61665965 TTAGTACTACACACGTGATCG
130 TTAGTACTACACACGTGATCA
* *
61665986 AAGCTATCAGGTATGCATAGTAGCTTGCACTTAGTACTACACATGTGACCTAACAATCTGGTACA
1 AAGCTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
61666051 CGT
66 CGT
61666054 GACCTAAAAC
Statistics
Matches: 201, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
151 199 0.99
153 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (150 bp):
AAGCTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACA
CGTAGTAACCTGCACTTAGTACTACACACATAACCTAACCACATATACACATAGTAGCCTGCACT
TAGTACTACACACGTGATCA
Found at i:61666052 original size:101 final size:101
Alignment explanation
Indices: 61665680--61666053 Score: 405
Period size: 101 Copynumber: 3.7 Consensus size: 101
61665670 CACCCTTGTA
** * * * *
61665680 ACCGAAGCTCTCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGG
1 ACCGAAGCAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGG
* *
61665745 TACACGTAGTAACCTGCACTTAGTACTACACATGTA
66 TACACGTAGTAGCCTGCACTTAGTACTACACATGTG
* * * * * *
61665781 ACCTAACCAA--TGGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGCTATCG
1 ACCGAAGCAATCTGG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAATCT
* * * *
61665844 GGTACGCATAGTAGCCTACACTTAGTACTACACATGCG
64 GGTACACGTAGTAGCCTGCACTTAGTACTACACATGTG
* * * * *
61665882 ACCTAA-CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTATCCATCAT-
1 ACCGAAGCAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATC-TG
* *
61665945 ATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
65 GTACACGTAGTAGCCTGCACTTAGTACTACACATGTG
* * * ** * *
61665982 ATCGAAGCTATCAGGTATGCATAGTAGCTTGCACTTAGTACTACACATGTGACCTAACAATCTGG
1 ACCGAAGCAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGG
61666047 TACACGT
66 TACACGT
61666054 GACCTAAAAC
Statistics
Matches: 222, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
99 3 0.01
100 79 0.36
101 137 0.62
102 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
ACCGAAGCAATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGG
TACACGTAGTAGCCTGCACTTAGTACTACACATGTG
Found at i:61666101 original size:151 final size:149
Alignment explanation
Indices: 61665682--61666103 Score: 446
Period size: 151 Copynumber: 2.8 Consensus size: 149
61665672 CCCTTGTAAC
* *
61665682 CGAAGCTCTCTGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
1 CGAAGCTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* * * * *
61665747 CACGT-A-GTAACCTGCACTTAGTACTACACATGTAACCTAACCAAT-GGATACACATAGTAGCC
66 CACGTGACCTAAACT-CACTT-CTA-AACACATGT-ACCTAA-CAATAGTATACACATAGTAGCC
61665809 TGCACTTAGTACTACACACGTGAT
126 TGCACTTAGTACTACACACGTGAT
* * * *
61665833 CAAAGCTATCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATCTGGTA
1 CGAAGCTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
** * * * * * * *
61665898 CACGTAGTAGCCTGCACTTAGTACTACACACATG-ACCTATCCATCA-TATACACGTAGTAGCCT
66 CACGT-G-A-CCTAAACTCACTTCTAAACACATGTACCTAACAAT-AGTATACACATAGTAGCCT
61665961 GCACTTAGTACTACACACGTGAT
127 GCACTTAGTACTACACACGTGAT
* *
61665984 CGAAGCTATCAGGTATGCATAGTAGCTTGCACTTAGTACTACACATGTGACCTAACAATCTGGTA
1 CGAAGCTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
* *
61666049 CACGTGACCTAAAAC-CA-TTTTAAACACATAGTAGCCT-GCAAATAGTACTACACAT
66 CACGTGACCT-AAACTCACTTCTAAACACAT-GTA-CCTAAC-AATAGTA-TACACAT
61666104 GTGTTCTCAC
Statistics
Matches: 224, Mismatches: 33, Indels: 28
0.79 0.12 0.10
Matches are distributed among these distances:
147 9 0.04
148 5 0.02
149 6 0.03
150 11 0.05
151 178 0.79
153 7 0.03
154 3 0.01
155 2 0.01
156 3 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (149 bp):
CGAAGCTATCAGGTACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCTAACAATCTGGTA
CACGTGACCTAAACTCACTTCTAAACACATGTACCTAACAATAGTATACACATAGTAGCCTGCAC
TTAGTACTACACACGTGAT
Found at i:61669254 original size:30 final size:30
Alignment explanation
Indices: 61669220--61669297 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
61669210 TGAGCTAAAA
*
61669220 TGAGCTAAGCTTTAGC-CCTTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCC-TAAGCTGAAGT
*
61669250 TGAGCTGAGATTATA-CTCCTAAGCTGAAGT
1 TGAGCTAAGATT-TAGCTCCTAAGCTGAAGT
*
61669280 TGAGCTAAGGTTTAGCTC
1 TGAGCTAAGATTTAGCTC
61669298 GTGAGATGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 2 0.05
30 35 0.85
31 4 0.10
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCCTAAGCTGAAGT
Found at i:61671569 original size:12 final size:12
Alignment explanation
Indices: 61671529--61671584 Score: 58
Period size: 12 Copynumber: 4.4 Consensus size: 12
61671519 GTTTCTTTTG
61671529 TTTCAATTTCTTT
1 TTTCAATTTC-TT
* *
61671542 CTCTTTAATCTCTT
1 -T-TTCAATTTCTT
61671556 TTTCAATTTCTT
1 TTTCAATTTCTT
*
61671568 TTTCAACTTCTT
1 TTTCAATTTCTT
61671580 TTTCA
1 TTTCA
61671585 CTCTCAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
12 25 0.69
13 1 0.03
14 3 0.08
15 7 0.19
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTCAATTTCTT
Found at i:61671640 original size:30 final size:30
Alignment explanation
Indices: 61671575--61671642 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
61671565 CTTTTTCAAC
*
61671575 TTCTTTTTCACTCTCAAATTTCTTTTCGTT
1 TTCTTTTTCAATCTCAAATTTCTTTTCGTT
* * *
61671605 CTCTTTTTCAATCTC-ATTTTCTTTTTCTTT
1 TTCTTTTTCAATCTCAAATTTC-TTTTCGTT
61671635 TTCTTTTT
1 TTCTTTTT
61671643 GCTTTTCAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 5 0.16
30 27 0.84
ACGTcount: A:0.10, C:0.22, G:0.01, T:0.66
Consensus pattern (30 bp):
TTCTTTTTCAATCTCAAATTTCTTTTCGTT
Found at i:61671771 original size:25 final size:26
Alignment explanation
Indices: 61671722--61671786 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 26
61671712 TGCCTCTCTT
* *
61671722 TTCTTTTT-ATTTTGTTTTATTTTTC
1 TTCTTTTTCTTTTTATTTTATTTTTC
61671747 TTCTTTTTCTTTTTATTTTA-TTTTC
1 TTCTTTTTCTTTTTATTTTATTTTTC
*
61671772 TT-TATTTTCTCTTTA
1 TTCT-TTTTCTTTTTA
61671787 CAGGAATGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 1 0.03
25 25 0.71
26 9 0.26
ACGTcount: A:0.09, C:0.11, G:0.02, T:0.78
Consensus pattern (26 bp):
TTCTTTTTCTTTTTATTTTATTTTTC
Found at i:61676092 original size:39 final size:39
Alignment explanation
Indices: 61676033--61676187 Score: 274
Period size: 39 Copynumber: 4.0 Consensus size: 39
61676023 CCAACACCAG
* *
61676033 CACGAAGCCTGCGGGTCTTTAGCCCGGACACATTTCCAA
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
*
61676072 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
*
61676111 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAC
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
61676150 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
61676188 GTGTCTTGCA
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (39 bp):
CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
Found at i:61679129 original size:40 final size:40
Alignment explanation
Indices: 61679067--61679284 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
61679057 AAGCCAAGTA
* * *
61679067 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
*
61679106 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
61679146 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
61679186 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * *
61679226 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
61679266 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
61679285 TTATCATCCA
Statistics
Matches: 167, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 13 0.08
40 154 0.92
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:61685103 original size:39 final size:39
Alignment explanation
Indices: 61685044--61685197 Score: 274
Period size: 39 Copynumber: 4.0 Consensus size: 39
61685034 CCAACACCAG
* *
61685044 CACGAAGCCTGCGGGTCTTTAGCCCGGACACATTTCCAA
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
*
61685083 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
61685122 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC-A
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
61685160 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
1 CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCA
61685198 GTGTCTTGCA
Statistics
Matches: 110, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
38 37 0.34
39 73 0.66
ACGTcount: A:0.23, C:0.32, G:0.24, T:0.21
Consensus pattern (39 bp):
CACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCCAA
Found at i:61685198 original size:77 final size:78
Alignment explanation
Indices: 61685040--61685198 Score: 293
Period size: 77 Copynumber: 2.1 Consensus size: 78
61685030 ATTACCAACA
*
61685040 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTTCCAACACGAAGCCTGCGGGACTTTAG
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTTCCAACACGAAGCCTGCGGGACTTTAG
61685105 CCCGGATACATTT
66 CCCGGATACATTT
*
61685118 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTCC-ACACGAAGCCTGCGGGACTTTAG
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTTCCAACACGAAGCCTGCGGGACTTTAG
61685182 CCCGGATACATTT
66 CCCGGATACATTT
61685195 CCAG
1 CCAG
61685199 TGTCTTGCAT
Statistics
Matches: 79, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
77 40 0.51
78 39 0.49
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (78 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTTCCAACACGAAGCCTGCGGGACTTTAG
CCCGGATACATTT
Found at i:61698250 original size:19 final size:18
Alignment explanation
Indices: 61698213--61698265 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
61698203 ACCTGTCAGA
*
61698213 AGAAAATAAATGAAGAATT
1 AGAAAATAAAT-AAAAATT
61698232 AGAAAATAAAATAAAAATT
1 AGAAAAT-AAATAAAAATT
*
61698251 -GAAATTGAAATAAAA
1 AGAAAAT-AAATAAAA
61698266 GTAAATGGCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 13 0.43
19 13 0.43
20 4 0.13
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (18 bp):
AGAAAATAAATAAAAATT
Found at i:61701040 original size:20 final size:20
Alignment explanation
Indices: 61700999--61701040 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
61700989 CTAAACCAAT
**
61700999 AACTTATGAAATTTTTGGAA
1 AACTTATGAAATTTTTACAA
61701019 AACTTA-GAAATTTTTTACAA
1 AACTTATGAAA-TTTTTACAA
61701039 AA
1 AA
61701041 TACAAGGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (20 bp):
AACTTATGAAATTTTTACAA
Found at i:61706405 original size:19 final size:20
Alignment explanation
Indices: 61706380--61706423 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
61706370 CTGAAAACAC
61706380 ATTAAATTC-GCTAAGACAA
1 ATTAAATTCGGCTAAGACAA
*
61706399 CTTAAATTCGGCTAAGACAA
1 ATTAAATTCGGCTAAGACAA
61706419 ATTAA
1 ATTAA
61706424 TTCAAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.45, C:0.16, G:0.11, T:0.27
Consensus pattern (20 bp):
ATTAAATTCGGCTAAGACAA
Found at i:61707288 original size:14 final size:15
Alignment explanation
Indices: 61707269--61707298 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
61707259 GTTTATTATA
61707269 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
61707283 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
61707298 T
1 T
61707299 CAAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:61708597 original size:15 final size:16
Alignment explanation
Indices: 61708572--61708601 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
61708562 AAAGAAAAGT
61708572 GGTTGTATGAATGTAC
1 GGTTGTATGAATGTAC
61708588 GGTT-TATGAATGTA
1 GGTTGTATGAATGTA
61708602 GTAGTGCCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.27, C:0.03, G:0.30, T:0.40
Consensus pattern (16 bp):
GGTTGTATGAATGTAC
Found at i:61709327 original size:43 final size:43
Alignment explanation
Indices: 61709206--61709361 Score: 147
Period size: 43 Copynumber: 3.6 Consensus size: 43
61709196 TTCGGGCCTC
* * * *
61709206 GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTATCGAGCTTCG
1 GGCCTAGCAGGCTATAATGCCGGTGAA-AAGA-TATCGAGCTTCG
* * * *
61709250 GGCCTAGCAGGCTATAATACCGATGAGATA-ATATCGGGCTTCG
1 GGCCTAGCAGGCTATAATGCCGGTGA-AAAGATATCGAGCTTCG
*
61709293 GGCCTAGCAGGCTATAATGCCGGTGAAAAGATATCGAGCTTCA
1 GGCCTAGCAGGCTATAATGCCGGTGAAAAGATATCGAGCTTCG
* * * *
61709336 AGCCTAGTAGTCGA-AATGCCGGTGAA
1 GGCCTAGCAGGCTATAATGCCGGTGAA
61709362 TGAGTTCAGA
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
42 14 0.15
43 56 0.60
44 16 0.17
45 6 0.06
46 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (43 bp):
GGCCTAGCAGGCTATAATGCCGGTGAAAAGATATCGAGCTTCG
Found at i:61712283 original size:12 final size:12
Alignment explanation
Indices: 61712268--61712318 Score: 54
Period size: 12 Copynumber: 4.5 Consensus size: 12
61712258 TTTTTCCCTA
61712268 TTTTTCAATTTC
1 TTTTTCAATTTC
**
61712280 TTTTTCTTTTTC
1 TTTTTCAATTTC
61712292 TTTTTC--TTT-
1 TTTTTCAATTTC
*
61712301 TCTTTCAATTTC
1 TTTTTCAATTTC
61712313 TTTTTC
1 TTTTTC
61712319 TTTCAATTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
9 5 0.16
10 3 0.09
11 3 0.09
12 21 0.66
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTTCAATTTC
Found at i:61712291 original size:18 final size:18
Alignment explanation
Indices: 61712268--61712350 Score: 72
Period size: 15 Copynumber: 4.9 Consensus size: 18
61712258 TTTTTCCCTA
61712268 TTTTTCAATTTCTTTTTC
1 TTTTTCAATTTCTTTTTC
**
61712286 TTTTTCTTTTTC-TTTTC
1 TTTTTCAATTTCTTTTTC
61712303 --TTTCAATTTCTTTTTC
1 TTTTTCAATTTCTTTTTC
61712319 --TTTCAA-TTCTTTTT-
1 TTTTTCAATTTCTTTTTC
*
61712333 TTTCTCTCAATTCCTTTT
1 TTT-T-TCAATTTCTTTT
61712351 ATTCTTTGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
15 16 0.30
16 12 0.22
17 6 0.11
18 14 0.26
19 6 0.11
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTCAATTTCTTTTTC
Found at i:61712319 original size:16 final size:16
Alignment explanation
Indices: 61712270--61712336 Score: 77
Period size: 15 Copynumber: 4.2 Consensus size: 16
61712260 TTTCCCTATT
61712270 TTTCAATTTCTTTTTC
1 TTTCAATTTCTTTTTC
**
61712286 TTTTTCTTTTTC-TTTTC
1 --TTTCAATTTCTTTTTC
61712303 TTTCAATTTCTTTTTC
1 TTTCAATTTCTTTTTC
61712319 TTTCAA-TTCTTTTT-
1 TTTCAATTTCTTTTTC
61712333 TTTC
1 TTTC
61712337 TCTCAATTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
14 4 0.09
15 16 0.36
16 11 0.25
17 5 0.11
18 8 0.18
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTCAATTTCTTTTTC
Found at i:61712321 original size:6 final size:6
Alignment explanation
Indices: 61712276--61712305 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
61712266 TATTTTTCAA
61712276 TTTCTT TTTCTT TTTCTT TTTC-T TTTCTT T
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT T
61712306 CAATTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTCTT
Found at i:61712350 original size:16 final size:16
Alignment explanation
Indices: 61712298--61712350 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
61712288 TTTCTTTTTC
*
61712298 TTTTCTTTCAATTTCT
1 TTTTCTTTCAATTCCT
*
61712314 TTTTCTTTCAATTCTTTT
1 TTTTCTTTCAATTC--CT
*
61712332 TTTTCTCTCAATTCCT
1 TTTTCTTTCAATTCCT
61712348 TTT
1 TTT
61712351 ATTCTTTGCT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
16 17 0.55
18 14 0.45
ACGTcount: A:0.11, C:0.21, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTCTTTCAATTCCT
Found at i:61712355 original size:18 final size:18
Alignment explanation
Indices: 61712316--61712355 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
61712306 CAATTTCTTT
* * *
61712316 TTCTTTCAATTCTTTTTT
1 TTCTCTCAATTCCTTTTA
61712334 TTCTCTCAATTCCTTTTA
1 TTCTCTCAATTCCTTTTA
61712352 TTCT
1 TTCT
61712356 TTGCTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.12, C:0.23, G:0.00, T:0.65
Consensus pattern (18 bp):
TTCTCTCAATTCCTTTTA
Found at i:61712420 original size:37 final size:37
Alignment explanation
Indices: 61712379--61712458 Score: 142
Period size: 37 Copynumber: 2.2 Consensus size: 37
61712369 TCCATTAACA
*
61712379 ACTCTTGCTTTTCTTTTTTCTAATTTCTTTTTCTCTC
1 ACTCTTACTTTTCTTTTTTCTAATTTCTTTTTCTCTC
61712416 ACTCTTACTTTTCTTTTTTCTAATTTCTTTTTCTCTC
1 ACTCTTACTTTTCTTTTTTCTAATTTCTTTTTCTCTC
*
61712453 ATTCTT
1 ACTCTT
61712459 TCATTACAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.10, C:0.24, G:0.01, T:0.65
Consensus pattern (37 bp):
ACTCTTACTTTTCTTTTTTCTAATTTCTTTTTCTCTC
Found at i:61715549 original size:43 final size:42
Alignment explanation
Indices: 61715478--61715578 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 42
61715468 GTTACTGAGG
*
61715478 TTTCATATAAGACCATATATAAGGTATGGCATCAGTATGTGA
1 TTTCATATAAGACCATATATAAGGTATGGCATCAGTAAGTGA
** * * *
61715520 TTTTTTTATAAGACCATATCT-GGGATATGGCATCGGTAAGTGA
1 -TTTCATATAAGACCATATATAAGG-TATGGCATCAGTAAGTGA
61715563 TTTCATATAAGACCAT
1 TTTCATATAAGACCAT
61715579 GTCAGAAACA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 16 0.33
43 33 0.67
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (42 bp):
TTTCATATAAGACCATATATAAGGTATGGCATCAGTAAGTGA
Found at i:61718586 original size:50 final size:50
Alignment explanation
Indices: 61718527--61718623 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
61718517 CCATGGCTGT
* *
61718527 ATATGTGTGATCCCATGGAATACCATACCTTGGACATGGCATTGGCATCA
1 ATATGTGTGATCCCATGGAAGACCATACCTGGGACATGGCATTGGCATCA
* **
61718577 ATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
1 ATATGTGTGATCCCATGGAAGACCATACCTGGGACATGGCATTGGCA
61718624 CTGATATTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28
Consensus pattern (50 bp):
ATATGTGTGATCCCATGGAAGACCATACCTGGGACATGGCATTGGCATCA
Found at i:61718653 original size:52 final size:50
Alignment explanation
Indices: 61718535--61718718 Score: 156
Period size: 52 Copynumber: 3.7 Consensus size: 50
61718525 GTATATGTGT
* * ** * * *
61718535 GATCCCATGGAATACCATACCTTGGACATGGCATTGGCATCAATATGTGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATATGC
* *
61718585 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGATATTTATGC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-TCA-ATATATGC
* * ** * *
61718637 GATCCTATGTAAGACCATGTTTGGGACATGAAATTAGCATC-A-ATATGT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATATGC
** ** *
61718685 GATTTCGCGTAAGACCATGTTTGGGACATGGCAT
1 GATCCCATGTAAGACCATGTCTGGGACATGGCAT
61718719 CGATATGAGA
Statistics
Matches: 108, Mismatches: 24, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
48 31 0.29
49 1 0.01
50 34 0.31
51 3 0.03
52 39 0.36
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (50 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATATATGC
Found at i:61718739 original size:42 final size:43
Alignment explanation
Indices: 61718644--61718744 Score: 114
Period size: 42 Copynumber: 2.3 Consensus size: 43
61718634 TGCGATCCTA
* *
61718644 TGTAAGACCATGTTTGGGACATGAAATTAGCATCAATATGTGATTTCG
1 TGTAAGACCATGTTTGGGACATG-----AGCATCAATATGAGACTTCG
* *
61718692 CGTAAGACCATGTTTGGGACATG-GCATCGATATGAGACTTCG
1 TGTAAGACCATGTTTGGGACATGAGCATCAATATGAGACTTCG
61718734 TGTAAGACCAT
1 TGTAAGACCAT
61718745 AGCTAGGCCA
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
42 26 0.54
48 22 0.46
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (43 bp):
TGTAAGACCATGTTTGGGACATGAGCATCAATATGAGACTTCG
Found at i:61718784 original size:37 final size:37
Alignment explanation
Indices: 61718734--61718852 Score: 124
Period size: 37 Copynumber: 3.4 Consensus size: 37
61718724 TGAGACTTCG
61718734 TGTAAGACCATAGCTAGGCCATGGCATTGTGATGA-CA
1 TGTAAGACCATAGCTAGGCCATGGCATTGTGAT-ATCA
* * * *
61718771 TGTAAGACCATAGCTGGGCTATTGCATTGTGATATGA
1 TGTAAGACCATAGCTAGGCCATGGCATTGTGATATCA
* * *
61718808 -GTAAGACCATAG-TTGGAC-T-GCATTGTGATATGA
1 TGTAAGACCATAGCTAGGCCATGGCATTGTGATATCA
61718841 -GTAAGACCATAG
1 TGTAAGACCATAG
61718853 TTGGACTATG
Statistics
Matches: 74, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
33 26 0.35
34 1 0.01
35 3 0.04
36 13 0.18
37 31 0.42
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (37 bp):
TGTAAGACCATAGCTAGGCCATGGCATTGTGATATCA
Found at i:61718835 original size:33 final size:33
Alignment explanation
Indices: 61718793--61718859 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
61718783 GCTGGGCTAT
61718793 TGCATTGTGATATGAGTAAGACCATAGTTGGAC
1 TGCATTGTGATATGAGTAAGACCATAGTTGGAC
61718826 TGCATTGTGATATGAGTAAGACCATAGTTGGAC
1 TGCATTGTGATATGAGTAAGACCATAGTTGGAC
61718859 T
1 T
61718860 ATGGCATCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.31
Consensus pattern (33 bp):
TGCATTGTGATATGAGTAAGACCATAGTTGGAC
Found at i:61719534 original size:43 final size:42
Alignment explanation
Indices: 61719472--61719568 Score: 149
Period size: 43 Copynumber: 2.3 Consensus size: 42
61719462 CTGAGGTTCT
61719472 GTATAAGACCATATATGGGATATGACATCGGTATATGATTTTC
1 GTATAAGACCATATATGGGATATGACATCGGTATATGA-TTTC
* * * *
61719515 GTATAAGACCATATCTGGGATATGGCATTGGTATGTGATTTC
1 GTATAAGACCATATATGGGATATGACATCGGTATATGATTTC
61719557 GTATAAGACCAT
1 GTATAAGACCAT
61719569 GTCAGGAACA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 16 0.32
43 34 0.68
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.34
Consensus pattern (42 bp):
GTATAAGACCATATATGGGATATGACATCGGTATATGATTTC
Found at i:61719582 original size:42 final size:43
Alignment explanation
Indices: 61719472--61719591 Score: 118
Period size: 42 Copynumber: 2.8 Consensus size: 43
61719462 CTGAGGTTCT
* * * * *
61719472 GTATAAGACCATAT-ATGGGATATGACATCGGTATATGATTTTC
1 GTATAAGACCATATCA-GGAACATGGCATTGGTATGTGATTTTC
* * *
61719515 GTATAAGACCATATCTGGGATATGGCATTGGTATGTGA-TTTC
1 GTATAAGACCATATCAGGAACATGGCATTGGTATGTGATTTTC
* * *
61719557 GTATAAGACCATGTCAGGAACATGGCGTTGATATG
1 GTATAAGACCATATCAGGAACATGGCATTGGTATG
61719592 ATATTTCATG
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
42 33 0.50
43 33 0.50
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (43 bp):
GTATAAGACCATATCAGGAACATGGCATTGGTATGTGATTTTC
Found at i:61719598 original size:42 final size:42
Alignment explanation
Indices: 61719504--61719613 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
61719494 TGACATCGGT
* * *
61719504 ATATGAT-TTTCGTATAAGACCATATCTGGGATATGGCATTG
1 ATATGATATTTCGTATAAGACCATATCAGGAACATGGCATTG
* * *
61719545 GTATG-TGATTTCGTATAAGACCATGTCAGGAACATGGCGTTG
1 ATATGAT-ATTTCGTATAAGACCATATCAGGAACATGGCATTG
* * *
61719587 ATATGATATTTCATGTAAGACTATATC
1 ATATGATATTTCGTATAAGACCATATC
61719614 CGAGATATGG
Statistics
Matches: 55, Mismatches: 11, Indels: 5
0.77 0.15 0.07
Matches are distributed among these distances:
40 1 0.02
41 4 0.07
42 49 0.89
43 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (42 bp):
ATATGATATTTCGTATAAGACCATATCAGGAACATGGCATTG
Found at i:61722527 original size:46 final size:46
Alignment explanation
Indices: 61722477--61722652 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
61722467 TGGTTGAGCA
61722477 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61722523 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
61722568 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
61722616 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61722653 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61722633 original size:93 final size:93
Alignment explanation
Indices: 61722474--61722645 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
61722464 GGATGGTTGA
* *
61722474 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61722539 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61722567 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
61722632 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61722646 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61730090 original size:46 final size:46
Alignment explanation
Indices: 61730031--61730206 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
61730021 TGGTTGAGCA
* *
61730031 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
61730077 TCTGAGCTAGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
61730122 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
61730170 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
61730207 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 59 0.57
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:61730140 original size:93 final size:93
Alignment explanation
Indices: 61730028--61730199 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
61730018 GGATGGTTGA
* * * *
61730028 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGTCTGAGCTAGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTAGTTGAGT
61730093 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
61730121 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTAGTTGAGT
61730186 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
61730200 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTAGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:61732346 original size:27 final size:27
Alignment explanation
Indices: 61732309--61732540 Score: 306
Period size: 27 Copynumber: 8.6 Consensus size: 27
61732299 TAAATTGTAC
61732309 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
61732336 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
61732363 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
61732390 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
61732416 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
61732444 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
61732472 AGCACTAAGTGTGCGATTTGA-TTTCGT
1 AGCACTAAGTGTGCGATTTGACTAT-GT
* * *
61732499 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
61732526 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
61732541 GACTCAATAT
Statistics
Matches: 182, Mismatches: 18, Indels: 10
0.87 0.09 0.05
Matches are distributed among these distances:
26 2 0.01
27 155 0.85
28 25 0.14
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:61735616 original size:20 final size:20
Alignment explanation
Indices: 61735590--61735638 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
61735580 TTGAAAACAC
*
61735590 ATTAAATTTAGCTAAGACCA
1 ATTAAATTCAGCTAAGACCA
* *
61735610 CTTAAATTCGGCTAAGACCA
1 ATTAAATTCAGCTAAGACCA
61735630 ATT-AATTCA
1 ATTAAATTCA
61735639 AAACATGTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (20 bp):
ATTAAATTCAGCTAAGACCA
Found at i:61735746 original size:37 final size:37
Alignment explanation
Indices: 61735678--61735758 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
61735668 GTTGCATTAA
* * *
61735678 AAACACCTATTTAATATGTATTAATCTAAGACATATT
1 AAACACCTATTTAATATGTATAAATCGAAGACACATT
61735715 AAACACCTATTTAAT-TAGTACTAAAT-GAAGACACATT
1 AAACACCTATTTAATAT-GTA-TAAATCGAAGACACATT
61735752 AAA-ACCT
1 AAACACCT
61735759 TAATTAAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
36 5 0.13
37 30 0.77
38 4 0.10
ACGTcount: A:0.46, C:0.16, G:0.06, T:0.32
Consensus pattern (37 bp):
AAACACCTATTTAATATGTATAAATCGAAGACACATT
Found at i:61740390 original size:27 final size:27
Alignment explanation
Indices: 61740352--61740606 Score: 325
Period size: 27 Copynumber: 9.4 Consensus size: 27
61740342 ATTACCAAAG
* *
61740352 TACCATCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
61740379 TATCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
61740406 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
61740433 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
61740460 TACCCTCGATTTA-TGAAATTA-TCGTTT
1 TACCCTCGATTTACAG-AATTACT-GTTT
*
61740487 TACCTTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
61740514 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
61740541 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
61740568 TACCCTCGATTTATAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
61740595 TACCCTTGATTT
1 TACCCTCGATTT
61740607 TTAAAATTAC
Statistics
Matches: 200, Mismatches: 24, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
26 1 0.00
27 197 0.99
28 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:61740901 original size:26 final size:25
Alignment explanation
Indices: 61740862--61740912 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
61740852 CTCGCTGCAA
*
61740862 TCTGGTGGCCTCGCCACATATATCTG
1 TCTGGTGACCTCGCCACA-ATATCTG
* *
61740888 TCTGGTGACTTCGCCGCAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
61740913 GCAGCCTCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.16, C:0.29, G:0.24, T:0.31
Consensus pattern (25 bp):
TCTGGTGACCTCGCCACAATATCTG
Found at i:61741007 original size:27 final size:26
Alignment explanation
Indices: 61740955--61741014 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
61740945 ATATATATAT
*
61740955 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* *
61740981 ATATCTGTATCTGGTGACCTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
61741008 ATATCTG
1 ATATCTG
61741015 CCAGCCTTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:61742495 original size:15 final size:15
Alignment explanation
Indices: 61742470--61742507 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
61742460 AAAATTAAAT
61742470 CAAGAAAATTT-CACA
1 CAAG-AAATTTGCACA
61742485 CATAGAAATTTGCACA
1 CA-AGAAATTTGCACA
61742501 CAAGAAA
1 CAAGAAA
61742508 CATAGAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18
Consensus pattern (15 bp):
CAAGAAATTTGCACA
Found at i:61750956 original size:20 final size:20
Alignment explanation
Indices: 61750908--61750947 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
61750898 CTTCGTAACA
61750908 AACACGGGCTGGACACGATC
1 AACACGGGCTGGACACGATC
61750928 AACACGGGCTGGACACGATC
1 AACACGGGCTGGACACGATC
61750948 CACATGGGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.30, T:0.10
Consensus pattern (20 bp):
AACACGGGCTGGACACGATC
Found at i:61759465 original size:17 final size:18
Alignment explanation
Indices: 61759443--61759476 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
61759433 CACATTGAAG
61759443 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
61759460 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
61759477 CTTCTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:61760469 original size:29 final size:28
Alignment explanation
Indices: 61760403--61760496 Score: 125
Period size: 28 Copynumber: 3.3 Consensus size: 28
61760393 AAGTCTACAT
* * *
61760403 ACATGCATATGGTCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCCAATC
* *
61760431 TCTTTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCC-AATC
*
61760460 ACATTCATATGGCCCATTAGGCCCATTC
1 ACATTCATATGGCCCATTAGGCCCAATC
61760488 ACATTCATA
1 ACATTCATA
61760497 GTCATGCAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 31 0.54
29 26 0.46
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.28
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCCAATC
Found at i:61764132 original size:16 final size:16
Alignment explanation
Indices: 61764108--61764139 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
61764098 GTGAGTGATC
*
61764108 TCCATCAAGCTTCCAA
1 TCCAACAAGCTTCCAA
61764124 TCCAACAAGCTTCCAA
1 TCCAACAAGCTTCCAA
61764140 ATTACTATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.38, G:0.06, T:0.22
Consensus pattern (16 bp):
TCCAACAAGCTTCCAA
Found at i:61764867 original size:25 final size:25
Alignment explanation
Indices: 61764834--61764882 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
61764824 TCGAGTTATA
**
61764834 TAACAGGAAACTCATGTGAGCCATG
1 TAACAGGAAACTCATAAGAGCCATG
* *
61764859 TAACGGGAAGCTCATAAGAGCCAT
1 TAACAGGAAACTCATAAGAGCCAT
61764883 AATTAGGATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.18
Consensus pattern (25 bp):
TAACAGGAAACTCATAAGAGCCATG
Found at i:61764942 original size:23 final size:23
Alignment explanation
Indices: 61764910--61764954 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
61764900 AGAACTTTTA
61764910 ATCAGAAAGCACACAAAGAGCCT
1 ATCAGAAAGCACACAAAGAGCCT
* * *
61764933 ATCAGGAAGCTCAGAAAGAGCC
1 ATCAGAAAGCACACAAAGAGCC
61764955 ATGTAACGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.44, C:0.24, G:0.22, T:0.09
Consensus pattern (23 bp):
ATCAGAAAGCACACAAAGAGCCT
Found at i:61765470 original size:51 final size:51
Alignment explanation
Indices: 61765407--61765539 Score: 167
Period size: 51 Copynumber: 2.6 Consensus size: 51
61765397 CAATCAAATC
* * * * *
61765407 TCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAGATA
1 TCTAAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATA
* ** *
61765458 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATA
* *
61765509 TCTAAGATTATAAAATTATATCTTTTAAGAT
1 TCTAAGATTATAAAATAATATCTTATAAGAT
61765540 CATGTTTCCA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (51 bp):
TCTAAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:61770672 original size:51 final size:51
Alignment explanation
Indices: 61770609--61770741 Score: 167
Period size: 51 Copynumber: 2.6 Consensus size: 51
61770599 AAATCAAATC
* * * * *
61770609 TCTAAGAATATAAAATCATATCTTCTAAGATTACCTATCTTATCTAAGATA
1 TCTAAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATA
* ** *
61770660 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATA
* *
61770711 TCTAAGATTATAAAATTATATCTTTTAAGAT
1 TCTAAGATTATAAAATAATATCTTATAAGAT
61770742 CATGTTTCCA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (51 bp):
TCTAAGATTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:61787797 original size:27 final size:27
Alignment explanation
Indices: 61787696--61787789 Score: 134
Period size: 27 Copynumber: 3.5 Consensus size: 27
61787686 ATTACCAAAG
*
61787696 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
**
61787723 TACCCTTAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* * *
61787750 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTT
61787777 TACCCTCGATTTA
1 TACCCTCGATTTA
61787790 AAAAATTATT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.44
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:61787807 original size:27 final size:27
Alignment explanation
Indices: 61787777--61787863 Score: 88
Period size: 27 Copynumber: 3.2 Consensus size: 27
61787767 ATTACTATTT
**
61787777 TACCCTCGATTTAAAAAATTATTAAAA
1 TACCCTCGATTTAAAAAATTACCAAAA
* *
61787804 TACCCT-AAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTAAAAAATTACCAAAA
* *
61787831 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-AAAAATTACCAAAA
61787858 TACCCT
1 TACCCT
61787864 AATCTTTAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
26 3 0.06
27 46 0.92
28 1 0.02
ACGTcount: A:0.45, C:0.23, G:0.05, T:0.28
Consensus pattern (27 bp):
TACCCTCGATTTAAAAAATTACCAAAA
Found at i:61787883 original size:26 final size:26
Alignment explanation
Indices: 61787791--61787942 Score: 94
Period size: 27 Copynumber: 5.7 Consensus size: 26
61787781 CTCGATTTAA
** *
61787791 AAAATTATTAAAATACCCTAAGT-TTAC
1 AAAATTACCAAAATACCCTAA-TCTT-T
* **
61787818 AAAATTACCAAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCT-AATCTTT
61787845 AAAATTACCAAAATACCCTAATCTTT
1 AAAATTACCAAAATACCCTAATCTTT
* * **
61787871 AAAATTGCTAAAATACCCTTGGT-TTGT
1 AAAATTACCAAAATACCC-TAATCTT-T
* ** *
61787898 GAAATTACTGAAATACTCTTAAT-TTGT
1 AAAATTACCAAAATAC-CCTAATCTT-T
61787925 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
61787943 CTGATTTACA
Statistics
Matches: 97, Mismatches: 23, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
26 23 0.24
27 72 0.74
28 2 0.02
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.31
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAATCTTT
Found at i:61787911 original size:27 final size:27
Alignment explanation
Indices: 61787870--61788036 Score: 111
Period size: 27 Copynumber: 6.1 Consensus size: 27
61787860 CCCTAATCTT
* *
61787870 TAAAATTGCTAAAATACCCTTGGTTTG
1 TAAAATTACTGAAATACCCTTGGTTTG
* * **
61787897 TGAAATTACTGAAATACTCTTAATTTG
1 TAAAATTACTGAAATACCCTTGGTTTG
** * * *
61787924 TAAAATTACCAAAATACCCCTGATTTA
1 TAAAATTACTGAAATACCCTTGGTTTG
* * * ** *
61787951 CAAAGTTACAGAAATACCCTTAACTTTC
1 TAAAATTACTGAAATACCCTT-GGTTTG
* *
61787979 TAAAAATTA-TGGAAATACCATTGGTTTAA
1 T-AAAATTACT-GAAATACCCTTGGTTT-G
*
61788008 CAAAATTACTGAAATACCCTTGGTTTG
1 TAAAATTACTGAAATACCCTTGGTTTG
61788035 TA
1 TA
61788037 GATTTACCAA
Statistics
Matches: 103, Mismatches: 32, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
27 58 0.56
28 28 0.27
29 17 0.17
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTTGGTTTG
Found at i:61788129 original size:27 final size:27
Alignment explanation
Indices: 61788099--61788173 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
61788089 TAAAAATACT
*
61788099 GTAAAGCCCTTGTAGGGTAAAGAGACC
1 GTAAAGCCCCTGTAGGGTAAAGAGACC
*
61788126 GTAAAGCCCCTGTAGGGTAAAGTGACC
1 GTAAAGCCCCTGTAGGGTAAAGAGACC
*
61788153 GTAATA-CCCCTGTATGGTAAA
1 GTAA-AGCCCCTGTAGGGTAAA
61788174 ATGACGAATG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 43 0.98
28 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.21
Consensus pattern (27 bp):
GTAAAGCCCCTGTAGGGTAAAGAGACC
Done.