Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 184 of 345
Found at i:62068328 original size:23 final size:23
Alignment explanation
Indices: 62068301--62068398 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
62068291 AGTGTTATTG
62068301 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
62068324 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
62068347 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
62068369 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
62068392 ATCAGTG
1 ATCAGTG
62068399 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:62068367 original size:45 final size:45
Alignment explanation
Indices: 62068303--62068391 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
62068293 TGTTATTGAT
* *
62068303 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
62068348 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
62068392 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:62069779 original size:17 final size:17
Alignment explanation
Indices: 62069757--62069795 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
62069747 CACGGTCAAG
*
62069757 ACACACGCTCGTGTGTC
1 ACACACGCCCGTGTGTC
62069774 ACACACGCCCGTGTGTC
1 ACACACGCCCGTGTGTC
62069791 ACACA
1 ACACA
62069796 TAGTCATGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.23, C:0.38, G:0.21, T:0.18
Consensus pattern (17 bp):
ACACACGCCCGTGTGTC
Found at i:62073086 original size:26 final size:27
Alignment explanation
Indices: 62073057--62073127 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
62073047 CATATACTGA
** *
62073057 TACT-GACAGCTTTGTTGCATTACTAT
1 TACTAGACAGCTTTGTTGCAACAATAT
* * *
62073083 TACTGGGCAGCTTTGCTGCAACAATAT
1 TACTAGACAGCTTTGTTGCAACAATAT
62073110 TACTAGA-AGCTTTGTTGC
1 TACTAGACAGCTTTGTTGC
62073128 GTTATTGGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
26 14 0.39
27 22 0.61
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (27 bp):
TACTAGACAGCTTTGTTGCAACAATAT
Found at i:62088618 original size:48 final size:48
Alignment explanation
Indices: 62088559--62088664 Score: 140
Period size: 48 Copynumber: 2.2 Consensus size: 48
62088549 TTTTATACGA
* * *
62088559 AATCACATATCGATGCCAATGCCATATCTCAAATATTGTATTACATGG
1 AATCTCATATCGATGCCAATGCCATATCTCAAACATGGTATTACATGG
* * * *
62088607 AATCTCATATCGATGCCAATGCCATGTCTTAGACATGGTCTTACATGG
1 AATCTCATATCGATGCCAATGCCATATCTCAAACATGGTATTACATGG
*
62088655 GATCTCATAT
1 AATCTCATAT
62088665 AACCCTAATG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (48 bp):
AATCTCATATCGATGCCAATGCCATATCTCAAACATGGTATTACATGG
Found at i:62095850 original size:79 final size:79
Alignment explanation
Indices: 62095723--62095931 Score: 303
Period size: 79 Copynumber: 2.6 Consensus size: 79
62095713 TCCTCGTTCA
* * * *
62095723 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACATAACCCGGATT
62095788 TAACAACTCGCACG
66 TAACAACTCGCACG
* * *
62095802 ACTGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACATAACCCGGAT
*
62095866 TTAATAACTCGCACG
65 TTAACAACTCGCACG
* *
62095881 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGG
62095932 ATCTTAATCC
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
78 24 0.21
79 54 0.47
80 37 0.32
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACG
Found at i:62095866 original size:40 final size:40
Alignment explanation
Indices: 62095723--62095984 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
62095713 TCCTCGTTCA
* * * * *
62095723 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
62095762 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
62095802 ACTGCCTTC-GGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
62095841 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
62095881 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
62095921 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
62095961 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
62095985 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 73 0.37
40 115 0.59
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:62106711 original size:27 final size:27
Alignment explanation
Indices: 62106681--62106858 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
62106671 ATATTAAGTC
* * *
62106681 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
62106708 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
62106736 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
** * *
62106763 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
62106790 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
62106817 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
62106844 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62106859 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:62106765 original size:55 final size:54
Alignment explanation
Indices: 62106681--62106858 Score: 232
Period size: 54 Copynumber: 3.3 Consensus size: 54
62106671 ATATTAAGTC
* * *
62106681 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAA-T
* * * *
62106736 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* ** *
62106790 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
62106844 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
62106859 GTACAATTTA
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:62106847 original size:81 final size:82
Alignment explanation
Indices: 62106702--62106857 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
62106692 TGCTATATAA
* *
62106702 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
62106767 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
62106784 TCAATTCGCACACTTAGTG-CATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
62106847 ACACTTAGTGC
65 ACACTTAGTGC
62106858 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 43 0.64
82 24 0.36
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:62113566 original size:17 final size:17
Alignment explanation
Indices: 62113544--62113579 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
62113534 ATTTCAAATC
62113544 TTACTTTTCATTATTTA
1 TTACTTTTCATTATTTA
62113561 TTACTTTTCATTATTTA
1 TTACTTTTCATTATTTA
62113578 TT
1 TT
62113580 TGTATGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (17 bp):
TTACTTTTCATTATTTA
Found at i:62117160 original size:27 final size:30
Alignment explanation
Indices: 62117127--62117185 Score: 88
Period size: 27 Copynumber: 2.1 Consensus size: 30
62117117 AAAGTTCGAG
*
62117127 ATGTTTTTCT-GTTTTTT-TTT-TATAAAA
1 ATGTTTTTCTACTTTTTTGTTTATATAAAA
62117154 ATGTTTTTCTACTTTTTTGTTTATATAAAA
1 ATGTTTTTCTACTTTTTTGTTTATATAAAA
62117184 AT
1 AT
62117186 TATATCGTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 10 0.36
28 6 0.21
29 3 0.11
30 9 0.32
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.63
Consensus pattern (30 bp):
ATGTTTTTCTACTTTTTTGTTTATATAAAA
Found at i:62137906 original size:19 final size:20
Alignment explanation
Indices: 62137879--62137930 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
62137869 AAGTCATAAG
62137879 AAAATTATAAAAAATGTAAA
1 AAAATTATAAAAAATGTAAA
* **
62137899 GAAA-TATAAAATTTGTAAA
1 AAAATTATAAAAAATGTAAA
62137918 AAAATTATAAAAA
1 AAAATTATAAAAA
62137931 TTATTGTACT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAATTATAAAAAATGTAAA
Found at i:62138144 original size:19 final size:19
Alignment explanation
Indices: 62138122--62138193 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 19
62138112 TATTTTTATT
62138122 ATTTTTATAAAATTTTACA
1 ATTTTTATAAAATTTTACA
* * * *
62138141 ATTTTTTTATATTTTTACG
1 ATTTTTATAAAATTTTACA
* * *
62138160 ATTTATATATATTTTCTA-A
1 ATTTTTATAAAATTT-TACA
*
62138179 ATTTTAATAAAATTT
1 ATTTTTATAAAATTT
62138194 AAATAATTTT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
19 39 0.95
20 2 0.05
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.58
Consensus pattern (19 bp):
ATTTTTATAAAATTTTACA
Found at i:62138189 original size:10 final size:10
Alignment explanation
Indices: 62138176--62138242 Score: 50
Period size: 10 Copynumber: 6.9 Consensus size: 10
62138166 ATATATTTTC
62138176 TAAATTTTAA
1 TAAATTTTAA
*
62138186 TAAAATTTAA
1 TAAATTTTAA
62138196 -ATAATTTT-A
1 TA-AATTTTAA
** *
62138205 TATTTTTTAT
1 TAAATTTTAA
*
62138215 TAAAATTTAA
1 TAAATTTTAA
62138225 TAAATTTT-A
1 TAAATTTTAA
*
62138234 TAACTTTTA
1 TAAATTTTA
62138243 TTGATTTTTA
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
9 14 0.33
10 28 0.67
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (10 bp):
TAAATTTTAA
Found at i:62138241 original size:9 final size:9
Alignment explanation
Indices: 62138105--62138243 Score: 55
Period size: 9 Copynumber: 14.8 Consensus size: 9
62138095 TTTTTGAAGC
*
62138105 ATTTTATTA
1 ATTTTATAA
* *
62138114 TTTTTATTA
1 ATTTTATAA
*
62138123 TTTTTATAAA
1 ATTTTAT-AA
*
62138133 ATTTTACAA
1 ATTTTATAA
* * *
62138142 TTTTTTTAT
1 ATTTTATAA
*
62138151 ATTTT-TACG
1 ATTTTATA-A
*
62138160 ATTTATATAT
1 ATTT-TATAA
*
62138170 ATTTTCTAA
1 ATTTTATAA
62138179 ATTTTAATAA
1 ATTTT-ATAA
* *
62138189 AATTTAAATA
1 ATTTTATA-A
*
62138199 ATTTTATAT
1 ATTTTATAA
*
62138208 TTTTTATTAAA
1 ATTTTA-T-AA
*
62138219 ATTTAATAA
1 ATTTTATAA
62138228 ATTTTATAA
1 ATTTTATAA
*
62138237 CTTTTAT
1 ATTTTAT
62138244 TGATTTTTAT
Statistics
Matches: 97, Mismatches: 25, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
8 2 0.02
9 61 0.63
10 27 0.28
11 7 0.07
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (9 bp):
ATTTTATAA
Found at i:62138243 original size:29 final size:29
Alignment explanation
Indices: 62138160--62138244 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 29
62138150 TATTTTTACG
* * *
62138160 ATTTATATATATTTTCTAAATTTTAATAAA
1 ATTTA-ATAAATTTTATAAATTTTATTAAA
**
62138190 ATTTAA-ATAATTTTATATTTTTTATTAAA
1 ATTTAATA-AATTTTATAAATTTTATTAAA
*
62138219 ATTTAATAAATTTTATAACTTTTATT
1 ATTTAATAAATTTTATAAATTTTATT
62138245 GATTTTTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
28 1 0.02
29 39 0.85
30 6 0.13
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (29 bp):
ATTTAATAAATTTTATAAATTTTATTAAA
Found at i:62144523 original size:49 final size:49
Alignment explanation
Indices: 62144470--62145162 Score: 1126
Period size: 49 Copynumber: 14.4 Consensus size: 49
62144460 TTGTGATGTG
62144470 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62144519 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62144568 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62144615 AGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62144662 AGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62144711 AGTGTATATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62144760 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
62144807 AGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62144854 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62144903 AGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62144952 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62145001 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
62145050 AGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
62145097 AGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62145144 AGTGTATA-A-ATGTGATAAG
1 AGTGTATATATATGTGATAAG
62145163 TCCCAAAGGG
Statistics
Matches: 611, Mismatches: 27, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
47 272 0.45
48 1 0.00
49 338 0.55
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:62144681 original size:192 final size:192
Alignment explanation
Indices: 62144470--62145162 Score: 1187
Period size: 192 Copynumber: 3.6 Consensus size: 192
62144460 TTGTGATGTG
62144470 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
*
62144535 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
66 ATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
62144600 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
131 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* *
62144662 AGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTG
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
62144727 ATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
66 ATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
*
62144792 TGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
131 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
62144854 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
62144919 ATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
66 ATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
* * *
62144984 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
129 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
62145049 A
192 A
*
62145050 AGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
1 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
* * * * * * *
62145111 ACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 ATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62145163 TCCCAAAGGG
Statistics
Matches: 479, Mismatches: 18, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
190 14 0.03
192 329 0.69
194 92 0.19
196 44 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (192 bp):
AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
ATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
Found at i:62151144 original size:25 final size:25
Alignment explanation
Indices: 62151116--62151194 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
62151106 CTAATGGCCG
62151116 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ***
62151141 ATGTGAT-AAGGCCTAA-TGGCCA-
1 ATGTGATGAATGTGAAAGTGTATAT
62151163 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
62151188 ATGTGAT
1 ATGTGAT
62151195 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:62151255 original size:49 final size:47
Alignment explanation
Indices: 62151069--62151436 Score: 578
Period size: 47 Copynumber: 7.7 Consensus size: 47
62151059 TTAGGATTCT
* * *
62151069 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
62151116 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62151163 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62151210 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
62151259 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTATTGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
62151308 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
62151355 ATGTGAT-ATATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGA-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
62151402 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62151437 TCCCGAAGGG
Statistics
Matches: 304, Mismatches: 12, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 2 0.01
47 207 0.68
49 95 0.31
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:62151320 original size:192 final size:190
Alignment explanation
Indices: 62151090--62151436 Score: 597
Period size: 192 Copynumber: 1.8 Consensus size: 190
62151080 GTGAACATGC
62151090 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * *
62151155 AATGGCCAATGTGATGA-ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
66 AATGGCCAATGTGAT-ATATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGA
62151219 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
130 ATGTGAAAGTGTATA-A-ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
62151282 ATATATGTGATAAGGCCTATTGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* *
62151347 AATGGCCGATGTGATATATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGGA
66 AATGGCCAATGTGATATATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGAA
62151412 TGTGAAAGTGTATAAATGTGATAAG
131 TGTGAAAGTGTATAAATGTGATAAG
62151437 TCCCGAAGGG
Statistics
Matches: 147, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
190 10 0.07
191 2 0.01
192 135 0.92
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (190 bp):
ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCAATGTGATATATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAACGTGATGAA
TGTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:62151611 original size:37 final size:37
Alignment explanation
Indices: 62151555--62151633 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
62151545 CCGAGCTCTA
* * *
62151555 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
* *
62151592 AAGATCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
62151629 AAGAC
1 AAGAC
62151634 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:62153381 original size:24 final size:24
Alignment explanation
Indices: 62153353--62153418 Score: 96
Period size: 24 Copynumber: 2.8 Consensus size: 24
62153343 GGCAACATAG
*
62153353 AATATGCCACAAATGCATTTACCA
1 AATATGCCACAAAGGCATTTACCA
*
62153377 AATATGCCACAAAGGCATTTATCA
1 AATATGCCACAAAGGCATTTACCA
**
62153401 AATGCGCCACAAAGGCAT
1 AATATGCCACAAAGGCAT
62153419 CATAGATAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.21
Consensus pattern (24 bp):
AATATGCCACAAAGGCATTTACCA
Found at i:62154285 original size:29 final size:29
Alignment explanation
Indices: 62154228--62154316 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
62154218 AACACTCATT
** *
62154228 GAATATGAAAAGGGATGGTGACGATCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
*
62154257 GAATATGAAAAGGGATTGTTTCGACCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
* * *
62154286 GATTAAAGAAAACGGATGGTTTCGACCATC
1 GAAT-ATGAAAAGGGATGGTTTCGACCATC
62154316 G
1 G
62154317 TTTAGCACAC
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 28 0.55
30 23 0.45
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (29 bp):
GAATATGAAAAGGGATGGTTTCGACCATC
Found at i:62157565 original size:24 final size:24
Alignment explanation
Indices: 62157533--62157587 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
62157523 ACACCTTCAT
*
62157533 ATACATATACACATGAACACATAC
1 ATACATATACACATAAACACATAC
* *
62157557 ATACTTATACACATAAACACATAT
1 ATACATATACACATAAACACATAC
62157581 ATACATA
1 ATACATA
62157588 CCTTCCAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.51, C:0.22, G:0.02, T:0.25
Consensus pattern (24 bp):
ATACATATACACATAAACACATAC
Found at i:62168002 original size:27 final size:27
Alignment explanation
Indices: 62167972--62168078 Score: 137
Period size: 27 Copynumber: 3.9 Consensus size: 27
62167962 TGCTGCCAAA
* *
62167972 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
62167999 ACAGATAATCGTGGCAGAACCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
62168026 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
62168054 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
62168079 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 54 0.76
28 16 0.23
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:62168061 original size:54 final size:54
Alignment explanation
Indices: 62167971--62168078 Score: 155
Period size: 54 Copynumber: 2.0 Consensus size: 54
62167961 TTGCTGCCAA
*
62167971 AACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCACCAG
1 AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCACCAG
* * * *
62168025 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAG
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCACCAG
62168079 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
54 30 0.62
55 18 0.38
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCACCAG
Found at i:62169353 original size:47 final size:47
Alignment explanation
Indices: 62169300--62169749 Score: 648
Period size: 47 Copynumber: 9.4 Consensus size: 47
62169290 ATATATACAG
62169300 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
***
62169347 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATAT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
62169394 ACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
1 ----GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
* *
62169445 GTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACATACGCAT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
***
62169492 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATAT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
*
62169539 ACGGGTTCACATTCATCATATTGGCCATTCGGCCTTATCACACATACGCAT
1 ----GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
* * * *
62169590 GTTCACATCCATCACAGTGGCCATTCGGCCTTGTCACACATACGTAT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
** **
62169637 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATATACGG
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC--ATACGCAT
62169686 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
*
62169733 GTTCACATCCATCACAT
1 GTTCACATTCATCACAT
62169750 AAAATCCTAA
Statistics
Matches: 358, Mismatches: 35, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
47 229 0.64
49 42 0.12
51 87 0.24
ACGTcount: A:0.26, C:0.31, G:0.14, T:0.30
Consensus pattern (47 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCAT
Found at i:62169437 original size:98 final size:97
Alignment explanation
Indices: 62169221--62169749 Score: 705
Period size: 98 Copynumber: 5.4 Consensus size: 97
62169211 CTTTCGGGAT
* * * *
62169221 TTCGGCTTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCAT
1 TTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA--C--
*
62169286 ATATATATATACAGGTTCACATTCATCACATTGGCCA
62 ACATATATATAC-GGTTCACATTCATCACATTGGCCA
62169323 TTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
1 TTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
62169388 ATATATACGGGTTCACATTCATCACATTGGCCA
66 ATATATAC-GGTTCACATTCATCACATTGGCCA
* *
62169421 TTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGTGGCCATTCGGCCTTATCACACAT
1 TTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
***
62169486 ACGCAT---GTTCACATTCATCACATTGGCCA
66 ATATATACGGTTCACATTCATCACATTGGCCA
*** *
62169515 TTCGGCCTTATCACACATATATATACGGGTTCACATTCATCATATTGGCCATTCGGCCTTATCAC
1 TTCGGCCTTATCACACATACGCAT----GTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
*** * *
62169580 ACATACGCAT---GTTCACATCCATCACAGTGGCCA
62 ACATATATATACGGTTCACATTCATCACATTGGCCA
* *
62169613 TTCGGCCTTGTCACACATACGTATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACAC--
1 TTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
62169676 ATATATACGGGTTCACATTCATCACATTGGCCA
66 ATATATAC-GGTTCACATTCATCACATTGGCCA
*
62169709 TTCGGCCTTATCACACATACGCATGTTCACATCCATCACAT
1 TTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
62169750 AAAATCCTAA
Statistics
Matches: 388, Mismatches: 31, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
92 3 0.01
94 82 0.21
96 59 0.15
98 187 0.48
100 1 0.00
102 56 0.14
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.31
Consensus pattern (97 bp):
TTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACAT
ATATATACGGTTCACATTCATCACATTGGCCA
Found at i:62169506 original size:145 final size:145
Alignment explanation
Indices: 62169245--62169748 Score: 841
Period size: 145 Copynumber: 3.4 Consensus size: 145
62169235 ATATATGCAT
* ** * *
62169245 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATATACAGGTTCACATTC
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCA--C------ACATACGCATGTTCACATCC
*
62169310 ATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGG
58 ATCACAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGG
62169375 CCTTATCACACATATATATACGG
123 CCTTATCACACATATATATACGG
62169398 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT
62169463 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
66 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
62169528 CACATATATATACGG
131 CACATATATATACGG
*
62169543 GTTCACATTCATCATATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT
* *
62169608 GGCCATTCGGCCTTGTCACACATACGTATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
66 GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
62169673 CAC--ATATATACGG
131 CACATATATATACGG
62169686 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACA
62169749 TAAAATCCTA
Statistics
Matches: 341, Mismatches: 10, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
143 72 0.21
145 232 0.68
151 1 0.00
153 36 0.11
ACGTcount: A:0.26, C:0.30, G:0.13, T:0.30
Consensus pattern (145 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT
GGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCA
CACATATATATACGG
Found at i:62173420 original size:29 final size:28
Alignment explanation
Indices: 62173384--62173461 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
62173374 TCATGAGATT
62173384 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
62173414 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
62173441 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
62173462 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:62173737 original size:173 final size:174
Alignment explanation
Indices: 62173414--62173740 Score: 611
Period size: 173 Copynumber: 1.9 Consensus size: 174
62173404 AAATTGTACA
62173414 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
62173479 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
62173544 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
62173588 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
62173653 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
62173717 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
62173741 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
173 81 0.54
174 68 0.46
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:62176908 original size:57 final size:56
Alignment explanation
Indices: 62176834--62176966 Score: 157
Period size: 57 Copynumber: 2.4 Consensus size: 56
62176824 GTGCCCACTG
* * * *
62176834 ATCGATCTCGCACACATAGTGCTTGGTT-GAAGAACTCGCACACACAGTGCCTC-A
1 ATCGATTTCGCACACATAGTGCTCGGTTAAAAGAACTCACACACACAGTGCCTCTA
* *
62176888 ATTACCGATTTCGCACACATAGTGCTCGGTTAAAAGAATTTACACACACAGTGCCTCTA
1 A-T--CGATTTCGCACACATAGTGCTCGGTTAAAAGAACTCACACACACAGTGCCTCTA
62176947 ATC-A-TTCGCACACATAGTGC
1 ATCGATTTCGCACACATAGTGC
62176967 CCACATAATG
Statistics
Matches: 68, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
54 17 0.25
55 2 0.03
56 1 0.01
57 24 0.35
58 22 0.32
59 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (56 bp):
ATCGATTTCGCACACATAGTGCTCGGTTAAAAGAACTCACACACACAGTGCCTCTA
Found at i:62176973 original size:11 final size:11
Alignment explanation
Indices: 62176954--62176987 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
62176944 CTAATCATTC
*
62176954 GCACACATAGT
1 GCACACATAAT
*
62176965 GCCCACATAAT
1 GCACACATAAT
62176976 GCACACATAAT
1 GCACACATAAT
62176987 G
1 G
62176988 ACTTAACTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.38, C:0.29, G:0.15, T:0.18
Consensus pattern (11 bp):
GCACACATAAT
Found at i:62177178 original size:40 final size:40
Alignment explanation
Indices: 62177146--62177377 Score: 358
Period size: 40 Copynumber: 5.8 Consensus size: 40
62177136 CCAGCATGAT
* * *
62177146 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
62177186 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
62177226 TGCTCCTT-GGGACTTAGCCCGGAGATATCACTAGCACGAA
1 TGCT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
62177266 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
62177306 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
62177346 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
62177378 CTCAATTCTC
Statistics
Matches: 175, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 170 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:62178987 original size:47 final size:47
Alignment explanation
Indices: 62178925--62179509 Score: 729
Period size: 47 Copynumber: 12.1 Consensus size: 47
62178915 ACACGTTTCG
* * * **
62178925 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
62178972 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
62179019 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
62179072 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
62179119 CATTGGCCATTCGGCCTTATCACAGATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
62179170 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* *
62179217 CAGTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
62179264 CATTGGCCATTCGGCCTTATCACACATATATATACGAGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
* * * *
62179315 TATTGGCCAGTCGGCCTTATCACACATACGCATGTTCACATCCATTA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
62179362 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
62179409 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
62179460 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
62179507 CAT
1 CAT
62179510 AAAATCCTAA
Statistics
Matches: 474, Mismatches: 46, Indels: 36
0.85 0.08 0.06
Matches are distributed among these distances:
47 299 0.63
49 1 0.00
51 130 0.27
53 44 0.09
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:62179194 original size:98 final size:96
Alignment explanation
Indices: 62178925--62179509 Score: 797
Period size: 98 Copynumber: 6.0 Consensus size: 96
62178915 ACACGTTTCG
* *
62178925 CATTAGCCATTCGGCCTTA-C-CACATATAT-TCATGTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATC-GGTTCACATTCATCACATTGGCCATTCGGC
* * *
62178987 CTTATCTCATATATGCATGTTCACATTCATCA
65 CTTATCACACATACGCATGTTCACATTCATCA
*
62179019 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCATTC
1 CATTGGCCATTCGGCCTTATCA--CACATATATAT-C-GGTTCACATTCATCACATTGGCCATTC
62179084 GGCCTTATCACACATACGCATGTTCACATTCATCA
62 GGCCTTATCACACATACGCATGTTCACATTCATCA
*
62179119 CATTGGCCATTCGGCCTTATCACAGATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-C-GGTTCACATTCATCACATTGGCCATTCGG
*
62179184 CCTTATCACACATACGCATGTTCACATCCATCA
64 CCTTATCACACATACGCATGTTCACATTCATCA
* * *
62179217 CAGTGGCCATTCGGCCTTATCACACATACACAT--GTTCACATTCATCACATTGGCCATTCGGCC
1 CATTGGCCATTCGGCCTTATCACACATATATATCGGTTCACATTCATCACATTGGCCATTCGGCC
***
62179280 TTATCACACATATATATACGAGTTCACATTCATCA
66 TTATCACACATACGCAT----GTTCACATTCATCA
* * *** * * *
62179315 TATTGGCCAGTCGGCCTTATCACACATACGCAT--GTTCACATCCATTACAGTGGCCATTCGGCC
1 CATTGGCCATTCGGCCTTATCACACATATATATCGGTTCACATTCATCACATTGGCCATTCGGCC
62179378 TTATCACACATACGCATGTTCACATTCATCA
66 TTATCACACATACGCATGTTCACATTCATCA
62179409 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-C-GGTTCACATTCATCACATTGGCCATTCGG
*
62179474 CCTTATCACACATACGCATGTTCACATCCATCA
64 CCTTATCACACATACGCATGTTCACATTCATCA
62179507 CAT
1 CAT
62179510 AAAATCCTAA
Statistics
Matches: 441, Mismatches: 36, Indels: 24
0.88 0.07 0.05
Matches are distributed among these distances:
94 104 0.24
95 1 0.00
98 253 0.57
99 1 0.00
100 82 0.19
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.31
Consensus pattern (96 bp):
CATTGGCCATTCGGCCTTATCACACATATATATCGGTTCACATTCATCACATTGGCCATTCGGCC
TTATCACACATACGCATGTTCACATTCATCA
Found at i:62179254 original size:145 final size:145
Alignment explanation
Indices: 62178930--62179508 Score: 896
Period size: 145 Copynumber: 4.0 Consensus size: 145
62178920 TTTCGCATTA
* * **
62178930 GCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTTAT--C
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* * ** * **
62178993 TC--ATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATATAC
66 ACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCA--C----ACATACGC
* * *
62179056 AGGTTCACATTCATCACATTG
125 ATGTTCACATCCATCACAGTG
62179077 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
*
62179142 AGATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTC
66 ACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTC
62179207 ACATCCATCACAGTG
131 ACATCCATCACAGTG
*
62179222 GCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
* * *
62179287 ACATATATATACGAGTTCACATTCATCATATTGGCCAGTCGGCCTTATCACACATACGCATGTTC
66 ACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTC
*
62179352 ACATCCATTACAGTG
131 ACATCCATCACAGTG
62179367 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
62179432 ACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTC
66 ACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTC
62179497 ACATCCATCACA
131 ACATCCATCACA
62179509 TAAAATCCTA
Statistics
Matches: 402, Mismatches: 26, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
145 299 0.74
147 58 0.14
149 2 0.00
151 43 0.11
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (145 bp):
GCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTC
ACATCCATCACAGTG
Found at i:62181826 original size:85 final size:85
Alignment explanation
Indices: 62181697--62181875 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
62181687 TATTTTATTG
*
62181697 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
62181762 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
62181782 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACTTGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
62181847 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
62181867 CCCATGCTC
1 CCCATGCTC
62181876 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:62186172 original size:45 final size:47
Alignment explanation
Indices: 62186083--62186191 Score: 111
Period size: 45 Copynumber: 2.4 Consensus size: 47
62186073 TATAAATCTA
* * *
62186083 TATTTCTATATTATT-TATTTTATTATTCTATCTATTATTATATTATC
1 TATTTATATATTATTATATATTATTATTCTA-CTATTAGTATATTATC
*
62186130 TATTTATATATTATTATATATTATTATT-T-CTATTTAGT-TATTATT
1 TATTTATATATTATTATATATTATTATTCTACTA-TTAGTATATTATC
*
62186175 TAGTTAT-TATTTATTAT
1 TATTTATATA-TTATTAT
62186192 TTATATTTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
44 2 0.04
45 22 0.41
46 4 0.07
47 15 0.28
48 11 0.20
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (47 bp):
TATTTATATATTATTATATATTATTATTCTACTATTAGTATATTATC
Found at i:62186215 original size:22 final size:24
Alignment explanation
Indices: 62186171--62186217 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
62186161 ATTTAGTTAT
**
62186171 TATTTAGTTATTATTTATTATTTA
1 TATTTAGTTATTATTTAGAATTTA
62186195 TATTTA-TTA-TATTTAGAATTTA
1 TATTTAGTTATTATTTAGAATTTA
62186217 T
1 T
62186218 TATTATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 12 0.57
23 3 0.14
24 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (24 bp):
TATTTAGTTATTATTTAGAATTTA
Found at i:62186224 original size:3 final size:3
Alignment explanation
Indices: 62186091--62186192 Score: 59
Period size: 3 Copynumber: 31.3 Consensus size: 3
62186081 TATATTTCTA
*
62186091 TAT TATT TAT T-T TAT TAT T-C TAT CTAT TAT TA- TAT TAT CTATT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT -TA-T TAT
62186137 ATAT TAT TAT ATAT TAT TAT T-T CTATT TAGT TAT TATT TAGT TAT TATT
1 -TAT TAT TAT -TAT TAT TAT TAT -TA-T TA-T TAT TA-T TA-T TAT TA-T
62186186 TAT TAT T
1 TAT TAT T
62186193 TATATTTATT
Statistics
Matches: 81, Mismatches: 4, Indels: 28
0.72 0.04 0.25
Matches are distributed among these distances:
2 6 0.07
3 43 0.53
4 30 0.37
5 2 0.02
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:62187661 original size:37 final size:37
Alignment explanation
Indices: 62187602--62187675 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
62187592 CTGTAATAAG
*
62187602 CCCAGTTGTTGCTGATATTCTCTTCTCGATTCCTTCT
1 CCCAGTTGTTGCTGATACTCTCTTCTCGATTCCTTCT
* *
62187639 CCCAGTTGTTGCTTATACTCTCTTCTCGGTTCCTTCT
1 CCCAGTTGTTGCTGATACTCTCTTCTCGATTCCTTCT
62187676 TCTCCTTCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.09, C:0.31, G:0.14, T:0.46
Consensus pattern (37 bp):
CCCAGTTGTTGCTGATACTCTCTTCTCGATTCCTTCT
Found at i:62188623 original size:18 final size:18
Alignment explanation
Indices: 62188602--62188644 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
62188592 CCTTTCCCCC
*
62188602 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
62188620 TTCTTTCATTTATTTATT
1 TTCTTTCATTTATTTATT
*
62188638 TGCTTTC
1 TTCTTTC
62188645 TTTTTATGCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.12, C:0.14, G:0.05, T:0.70
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:62189166 original size:30 final size:29
Alignment explanation
Indices: 62189132--62189193 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 29
62189122 AAAATGAAAT
* *
62189132 TAATTTTTTTTATAGTATAATAGCTAGAAC
1 TAATTTTATTTATA-TATAATAACTAGAAC
*
62189162 TAA--TTATTTATATTTAATAACTAGAAC
1 TAATTTTATTTATATATAATAACTAGAAC
62189189 TAATT
1 TAATT
62189194 ATTCCATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
27 16 0.59
28 8 0.30
30 3 0.11
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.47
Consensus pattern (29 bp):
TAATTTTATTTATATATAATAACTAGAAC
Found at i:62189185 original size:27 final size:28
Alignment explanation
Indices: 62189140--62189196 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 28
62189130 ATTAATTTTT
*
62189140 TTTATAGTATAATAGCTAGAACTAATTA
1 TTTATAGTATAATAACTAGAACTAATTA
*
62189168 TTTATA-TTTAATAACTAGAACTAATTA
1 TTTATAGTATAATAACTAGAACTAATTA
62189195 TT
1 TT
62189197 CCATTCATGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (28 bp):
TTTATAGTATAATAACTAGAACTAATTA
Found at i:62197511 original size:28 final size:28
Alignment explanation
Indices: 62197441--62197543 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
62197431 ATTGCATGAC
* * *
62197441 TATGAATGTGATTGAGCCTAACGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
*
62197469 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
* *
62197497 TATGAATGTGATTGGGCCCGATGAGCCA
1 TATGAATGTGATTGGGCCTGATGGGCCA
**
62197525 TATGAATAAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
62197544 AAATGGACCA
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGATGGGCCA
Found at i:62198830 original size:17 final size:18
Alignment explanation
Indices: 62198797--62198830 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
62198787 TTTAAAGAAG
62198797 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
62198815 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
62198831 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:62200559 original size:29 final size:29
Alignment explanation
Indices: 62200505--62200599 Score: 120
Period size: 29 Copynumber: 3.3 Consensus size: 29
62200495 ATTGCATGAC
*
62200505 TATGAATTTGA-TTGGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
62200533 TATGAATGTGATTTAGGCCTAATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* * * *
62200562 TATGAAAGAGATTTGGGCCTAGTGAGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
62200591 TATGCATGT
1 TATGAATGT
62200600 ATGTAGACTT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 10 0.18
29 46 0.82
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:62204982 original size:46 final size:46
Alignment explanation
Indices: 62204834--62205006 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
62204824 TGTAACCCGC
* * *
62204834 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
62204880 CC--AAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* *
62204924 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
62204970 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
62205007 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 11, Indels: 20
0.77 0.08 0.15
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
44 32 0.30
45 2 0.02
46 62 0.58
47 1 0.01
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62205007 original size:92 final size:90
Alignment explanation
Indices: 62204841--62205009 Score: 293
Period size: 90 Copynumber: 1.9 Consensus size: 90
62204831 CGCCCATAAG
* *
62204841 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAAGTGAACTCGGACTCAACTCAAC
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAAGTGAACTCGGACTCAACTCAAC
62204906 GAGTTCGGATGCCTAGTTACATTCA
66 GAGTTCGGATGCCTAGTTACATTCA
*
62204931 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCC--AAGTGAACTCGGACTCAACTCA
62204996 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
62205010 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
90 38 0.51
92 36 0.49
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (90 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTCA
Found at i:62205025 original size:46 final size:46
Alignment explanation
Indices: 62204842--62205025 Score: 159
Period size: 46 Copynumber: 4.0 Consensus size: 46
62204832 GCCCATAAGC
* ** * *
62204842 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCAAGT
* *
62204886 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCAAGT
* * *
62204932 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCAAGT
*
62204978 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCAAGT
62205024 GA
1 GA
62205026 CATGTCACTT
Statistics
Matches: 113, Mismatches: 13, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
43 1 0.01
44 37 0.33
45 1 0.01
46 64 0.57
47 1 0.01
48 8 0.07
49 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCAAGT
Found at i:62207421 original size:30 final size:30
Alignment explanation
Indices: 62207377--62207465 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
62207367 CAAAGATAAC
62207377 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
62207406 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
62207436 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
62207466 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:62207425 original size:15 final size:15
Alignment explanation
Indices: 62207377--62207456 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
62207367 CAAAGATAAC
*
62207377 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
62207391 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
62207406 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
62207421 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
62207436 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
62207451 AAGAAA
1 AAGAAA
62207457 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:62207465 original size:15 final size:15
Alignment explanation
Indices: 62207388--62207465 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
62207378 AGAAAACCGA
62207388 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
62207403 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
62207417 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
62207432 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
62207448 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
62207463 ATA
1 ATA
62207466 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:62210492 original size:92 final size:92
Alignment explanation
Indices: 62210381--62210550 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
62210371 GCCCATAAGT
* *
62210381 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62210446 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
62210473 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62210538 CGAGTTCGGATGC
66 CGAGTTCGGATGC
62210551 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:62210547 original size:46 final size:46
Alignment explanation
Indices: 62210373--62210547 Score: 223
Period size: 46 Copynumber: 3.8 Consensus size: 46
62210363 TGTAACCCGC
* * *
62210373 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
62210419 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* * *
62210465 ACATTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
62210511 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
62210548 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.88
47 2 0.02
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:62210566 original size:46 final size:46
Alignment explanation
Indices: 62210378--62210566 Score: 151
Period size: 46 Copynumber: 4.1 Consensus size: 46
62210368 CCCGCCCATA
* ** * *
62210378 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
62210423 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
62210471 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
62210516 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
62210562 AGTGA
1 AGTGA
62210567 CATGTCACTT
Statistics
Matches: 116, Mismatches: 13, Indels: 28
0.74 0.08 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 95 0.82
47 1 0.01
48 4 0.03
49 1 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:62213051 original size:48 final size:48
Alignment explanation
Indices: 62212998--62213132 Score: 157
Period size: 48 Copynumber: 2.8 Consensus size: 48
62212988 CTCGCACACT
* * *
62212998 AAGTGCCAAAATCATGGCCCGAAGCCAACTCAATATATCTCACACTCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATATCTCACACCCG
* * *
62213046 AAGTGCTAATATCATGGCCC-ATAGCCAAATCAGTGA-AGCTCACACCCG
1 AAGTGCCAATATCATGGCCCGA-AGCCAAATCAAT-ATATCTCACACCCG
* * *
62213094 AAGTGCCAATATCATGGCCTGGAGCCAAATCAATGTATC
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATATC
62213133 CCCTAATGAC
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
47 1 0.01
48 69 0.97
49 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.20
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATATATCTCACACCCG
Found at i:62214673 original size:84 final size:84
Alignment explanation
Indices: 62214532--62214702 Score: 306
Period size: 84 Copynumber: 2.0 Consensus size: 84
62214522 TGTTACAGGC
* *
62214532 TTTATTAATATAGATGTAATGTAATTCAACTGATGCCAAAGAAGATGGTTCAAATTTGAACTGGT
1 TTTATTAATATAGATGTAATGTAATTCAACTGATGCCAAAGAAGATGATTAAAATTTGAACTGGT
62214597 TTTGCATCTTCATTTTGAT
66 TTTGCATCTTCATTTTGAT
* *
62214616 TTTATTAATATAGATGTAATGTAATTTAGCTGATGCCAAAGAAGATGATTAAAATTTGAACTGGT
1 TTTATTAATATAGATGTAATGTAATTCAACTGATGCCAAAGAAGATGATTAAAATTTGAACTGGT
62214681 TTTGCATCTTCATTTTGAT
66 TTTGCATCTTCATTTTGAT
62214700 TTT
1 TTT
62214703 GTTGGCAATA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.42
Consensus pattern (84 bp):
TTTATTAATATAGATGTAATGTAATTCAACTGATGCCAAAGAAGATGATTAAAATTTGAACTGGT
TTTGCATCTTCATTTTGAT
Found at i:62215198 original size:12 final size:12
Alignment explanation
Indices: 62215181--62215207 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
62215171 GTTTGTATCA
62215181 TTTAAAATAATT
1 TTTAAAATAATT
62215193 TTTAAAATAATT
1 TTTAAAATAATT
62215205 TTT
1 TTT
62215208 TTTGAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TTTAAAATAATT
Found at i:62220527 original size:20 final size:20
Alignment explanation
Indices: 62220502--62220541 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
62220492 AGCAATAATA
62220502 GTAAGACAAAATTTTAAATT
1 GTAAGACAAAATTTTAAATT
62220522 GTAAGACAAAATTTTAAATT
1 GTAAGACAAAATTTTAAATT
62220542 ATGTTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.35
Consensus pattern (20 bp):
GTAAGACAAAATTTTAAATT
Found at i:62233517 original size:40 final size:40
Alignment explanation
Indices: 62233434--62233690 Score: 281
Period size: 40 Copynumber: 6.5 Consensus size: 40
62233424 GGATGATAAT
* * *
62233434 CGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCA-TTTGCACGAGTTACTA-TATC
* * * *
62233475 CGGGCTAAGTCCCAAAGGCATTTGCATGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGCACGAGTTACTATATC
*** *
62233515 CGGGCTAAGTCCCGAAGGCATTTTTGCTAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGCACGAGTTACTATATC
**
62233555 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGCACGAGTTACTATATC
* *
62233595 CGGGCTAAGTCCCGAAGGCAATTGTACGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGCACGAGTTACTATATC
*
62233635 CGGGCTATGTCCCGAAGGCA-TTG-AGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGCA-CGAGTTA-CTATATC
* *
62233674 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
62233691 TACTTGGCTT
Statistics
Matches: 190, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
38 16 0.08
39 15 0.08
40 140 0.74
41 19 0.10
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGCACGAGTTACTATATC
Found at i:62233648 original size:120 final size:120
Alignment explanation
Indices: 62233434--62233656 Score: 333
Period size: 120 Copynumber: 1.9 Consensus size: 120
62233424 GGATGATAAT
*
62233434 CGGGCTAAGTCCCGAAGGCATTTTGCGCTAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTTGCGC-AGTGACTAGTTCCGGGCTAAGTCCCAAAGGCAATTG
* *
62233499 CATGAGTTATTACATCCGGGCTAAGTCCCGAAGGCATTTTTGCTAGTTACTATATC
65 CACGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTTTGCTAGTTACTATATC
* *
62233555 CGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTTACTA-TATCCGGGCTAAGTCCCGAAGGCAATT
1 CGGGCTAAGTCCCGAAGGCATTT-TGCGCAGTGACTAGT-TCCGGGCTAAGTCCCAAAGGCAATT
* * *
62233618 GTACGAGTTACTATATCCGGGCTATGTCCCGAAGGCATT
64 GCACGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATT
62233657 GAGCGAGTAG
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
119 1 0.01
120 64 0.70
121 23 0.25
122 4 0.04
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.27
Consensus pattern (120 bp):
CGGGCTAAGTCCCGAAGGCATTTTGCGCAGTGACTAGTTCCGGGCTAAGTCCCAAAGGCAATTGC
ACGAGTTACTACATCCGGGCTAAGTCCCGAAGGCATTTTTGCTAGTTACTATATC
Found at i:62238010 original size:50 final size:50
Alignment explanation
Indices: 62237932--62238031 Score: 164
Period size: 50 Copynumber: 2.0 Consensus size: 50
62237922 TTTAGTGTCT
*
62237932 GTTAAAAATTTATCTATTGAATTTACTGAATTTGTAGTTAAAGTTTCAAA
1 GTTAAAAATTTATCTATTGAATTCACTGAATTTGTAGTTAAAGTTTCAAA
* * *
62237982 GTTAAAAATTTATTTGTTGAATTCACTGAATTTGTGGTTAAAGTTTCAAA
1 GTTAAAAATTTATCTATTGAATTCACTGAATTTGTAGTTAAAGTTTCAAA
62238032 TCGCTTGGGC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (50 bp):
GTTAAAAATTTATCTATTGAATTCACTGAATTTGTAGTTAAAGTTTCAAA
Found at i:62251524 original size:13 final size:13
Alignment explanation
Indices: 62251506--62251533 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
62251496 TGAACAAACC
62251506 CTAGCTATGGTGT
1 CTAGCTATGGTGT
62251519 CTAGCTATGGTGT
1 CTAGCTATGGTGT
62251532 CT
1 CT
62251534 TGCAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.18, G:0.29, T:0.39
Consensus pattern (13 bp):
CTAGCTATGGTGT
Found at i:62255710 original size:43 final size:43
Alignment explanation
Indices: 62255606--62255703 Score: 144
Period size: 43 Copynumber: 2.3 Consensus size: 43
62255596 ATGTGCTTAT
*
62255606 GTGTAAGACCATGTCTGGGACATTAGCATCATTATGTCATTAC
1 GTGTAAGACCATGTCTGGGACATTAGCATCATTATGTAATTAC
* * *
62255649 GTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-TAATTTC
1 GTGTAAGACCATGTCTGGGACATTAGCATCATT-ATGTAATTAC
62255692 GTGTAAGACCAT
1 GTGTAAGACCAT
62255704 AGCTGGGCTA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 48 0.96
44 2 0.04
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTAGCATCATTATGTAATTAC
Found at i:62259674 original size:49 final size:49
Alignment explanation
Indices: 62259609--62261049 Score: 2481
Period size: 49 Copynumber: 29.7 Consensus size: 49
62259599 TAGTATGGCG
*
62259609 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
62259658 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62259707 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62259756 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62259803 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62259852 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62259901 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62259950 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62259997 TAATGGCCGATTTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260046 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62260095 TAATGGCCGATGTGATGAATGTGAAAGTGTATATA-A-GTGATATGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62260142 TAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260191 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62260238 TAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
62260287 TAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260336 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62260383 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260432 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260481 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260530 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
**
62260577 TAATCACCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260626 TAATGGCCGATGTGATGAATGATGAAAGTGATAGATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATG-TGAAAGTG-T--ATATATATGTGATAAGGCC
62260679 TAATGGCCGAGTGTGATGAATGTGAAAGTGTATATA-A-GTGATAAGGCC
1 TAATGGCCGA-TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260727 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATA-GTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62260775 TAATGGCCGATGTGATTGAATGTGAAAGTGTA-ATGTATGTGATAAGGCC
1 TAATGGCCGATGTGA-TGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260824 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62260873 TAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62260922 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
62260969 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * * *
62261016 GAGTGGCCAAACGTGATGGATGTGAAAGTGTATA
1 TAATGGCC-GATGTGATGAATGTGAAAGTGTATA
62261050 ATGTGATAAG
Statistics
Matches: 1334, Mismatches: 34, Indels: 47
0.94 0.02 0.03
Matches are distributed among these distances:
47 367 0.28
48 88 0.07
49 814 0.61
50 15 0.01
51 1 0.00
52 1 0.00
53 37 0.03
54 11 0.01
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:62259874 original size:145 final size:146
Alignment explanation
Indices: 62259609--62261049 Score: 2455
Period size: 145 Copynumber: 9.9 Consensus size: 146
62259599 TAGTATGGCG
* *
62259609 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
62259674 GAATGTGAAAGTGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
65 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62259739 ATATATGTGATAAGGCC
130 ATATATGTGATAAGGCC
*
62259756 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
62259820 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
62259885 TATATGTGATAAGGCC
131 TATATGTGATAAGGCC
62259901 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
62259966 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATTTGATGAATGTGAAAGTGTAT
65 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62260029 ATATATGTGATAAGGCC
130 ATATATGTGATAAGGCC
62260046 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
62260111 GAATGTGAAAGTGTATATA-A-GTGATATGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTAT
65 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62260174 ATATATGTGATAAGGCC
130 ATATATGTGATAAGGCC
*
62260191 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAGTGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62260255 AATGTGAAAGTGTATATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATA
66 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
62260320 TATATGTGACAAGGCC
131 TATATGTGATAAGGCC
62260336 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
62260400 AATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
66 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
62260465 TATATGTGATAAGGCC
131 TATATGTGATAAGGCC
62260481 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGAT
**
62260546 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATCACCGATGTGATGAATGTGAAAGTGTAT
65 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62260609 ATATATGTGATAAGGCC
130 ATATATGTGATAAGGCC
62260626 TAATGGCCGATGTGATGAATGATGAAAGTGATAGATATATATGTGATAAGGCCTAATGGCCGAGT
1 TAATGGCCGATGTGATGAATG-TGAAA--G-T-GATATATATGTGATAAGGCCTAATGGCCGA-T
62260691 GTGATGAATGTGAAAGTGTATATA-A-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
60 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
62260754 TGTATATATA-GTGATAAGGCC
125 TGTATATATATGTGATAAGGCC
*
62260775 TAATGGCCGATGTGATTGAATGTGAAAGTG-TAATGTATGTGATAAGGCCTAATGGCCGATGTGA
1 TAATGGCCGATGTGA-TGAATGTGAAAGTGAT-ATATATGTGATAAGGCCTAATGGCCGATGTGA
*
62260839 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTA
64 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
62260904 TATATATGTGATAAGGCC
129 TATATATGTGATAAGGCC
62260922 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
62260986 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAAACGTGATGGATGTGAAAGTGTAT
66 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC-GATGTGATGAATGTGAAAGTGTAT
62261049 A
130 A
62261050 ATGTGATAAG
Statistics
Matches: 1244, Mismatches: 28, Indels: 47
0.94 0.02 0.04
Matches are distributed among these distances:
143 75 0.06
144 49 0.04
145 760 0.61
146 69 0.06
147 152 0.12
148 1 0.00
149 61 0.05
150 72 0.06
151 1 0.00
152 4 0.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (146 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATATGTGATAAGGCC
Found at i:62259946 original size:194 final size:194
Alignment explanation
Indices: 62259609--62261049 Score: 2531
Period size: 194 Copynumber: 7.4 Consensus size: 194
62259599 TAGTATGGCG
* *
62259609 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
62259674 GAATGTGAAAGTGTATATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62259739 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
131 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
62259803 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62259868 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62259933 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
131 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
62259997 TAATGGCCGATTTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62260062 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
62260127 ATA-A-GTGATATGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
131 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
62260190 C
194 C
*
62260191 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAGTGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
62260254 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
62260319 ATATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
131 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
62260383 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62260448 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62260513 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
131 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
**
62260577 TAATCACCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62260642 GAATGATGAAAGTGATAGATATATATGTGATAAGGCCTAATGGCCGAGTGTGATGAATGTGAAAG
66 GAATG-TGAAAGTG-T--ATATATATGTGATAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAG
62260707 TGTATATA-A-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGTGATA
126 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-GTGATA
62260770 AGGCC
190 AGGCC
*
62260775 TAATGGCCGATGTGATTGAATGTGAAAGTGTA-ATGTATGTGATAAGGCCTAATGGCCGATGTGA
1 TAATGGCCGATGTGA-TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
*
62260839 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAGTGGCCGATGTGATGAATGTGAAAGTGTA
65 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
62260904 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
130 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
62260969 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAAACGTGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC-GATGTGA
*
62261032 TGGATGTGAAAGTGTATA
65 TGAATGTGAAAGTGTATA
62261050 ATGTGATAAG
Statistics
Matches: 1197, Mismatches: 33, Indels: 35
0.95 0.03 0.03
Matches are distributed among these distances:
192 205 0.17
193 63 0.05
194 685 0.57
195 55 0.05
196 2 0.00
197 55 0.05
198 91 0.08
199 41 0.03
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (194 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:62262848 original size:40 final size:40
Alignment explanation
Indices: 62262454--62262836 Score: 550
Period size: 40 Copynumber: 9.6 Consensus size: 40
62262444 GAGTGAAATG
* *
62262454 TCCGGGCTAAATCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
62262494 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
62262534 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** *
62262574 TCCGGACTAAGTTTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
62262614 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
62262654 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
62262694 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
62262734 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
62262774 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
62262814 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
62262837 ATCATGCTGG
Statistics
Matches: 316, Mismatches: 27, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 316 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:62266575 original size:49 final size:49
Alignment explanation
Indices: 62266510--62267084 Score: 974
Period size: 49 Copynumber: 11.9 Consensus size: 49
62266500 TAGTATGGCG
*
62266510 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62266559 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62266608 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62266657 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62266704 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62266753 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
*
62266802 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATA--TGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62266849 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62266898 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
62266947 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* *
62266994 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
* * * *
62267041 GAGTGG-CGAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAATGGCCG-ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
62267085 TCCCGAAGGG
Statistics
Matches: 504, Mismatches: 15, Indels: 16
0.94 0.03 0.03
Matches are distributed among these distances:
46 2 0.00
47 185 0.37
48 1 0.00
49 316 0.63
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
Found at i:62266716 original size:96 final size:97
Alignment explanation
Indices: 62266510--62267084 Score: 959
Period size: 96 Copynumber: 6.0 Consensus size: 97
62266500 TAGTATGGCG
* *
62266510 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62266575 GAATGTGAAAGTGTATATATATGTGATAAGGCC
66 GAATGTGAAAGTG-ATATATATGTGATAAGGCC
62266608 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62266673 GAATGTGAAAGTG-TATATATGTGATAAGGCC
66 GAATGTGAAAGTGATATATATGTGATAAGGCC
*
62266704 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62266769 GAATGTGAAAGTGTATATATATGTGATAAGGCC
66 GAATGTGAAAGTG-ATATATATGTGATAAGGCC
*
62266802 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATA--TGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62266865 GAATGTGAAAGTGTATATATATGTGATAAGGCC
66 GAATGTGAAAGTG-ATATATATGTGATAAGGCC
62266898 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
62266963 GAATGTGAAAGTG-TATATATGTGATAAGGCC
66 GAATGTGAAAGTGATATATATGTGATAAGGCC
* * * * *
62266994 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGG-CGAACGTGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG-ATGTGA
* *
62267056 TGGATGTGAAAGTG-TATAAATGTGATAAG
65 TGAATGTGAAAGTGATATATATGTGATAAG
62267085 TCCCGAAGGG
Statistics
Matches: 459, Mismatches: 13, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
93 2 0.00
94 52 0.11
96 237 0.52
98 168 0.37
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (97 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
GAATGTGAAAGTGATATATATGTGATAAGGCC
Found at i:62266775 original size:145 final size:145
Alignment explanation
Indices: 62266510--62267084 Score: 989
Period size: 145 Copynumber: 4.0 Consensus size: 145
62266500 TAGTATGGCG
*
62266510 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGAT
62266575 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
62266640 ATATATGTGATAAGGCC
129 ATATATGTGATAAGGCC
62266657 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
62266722 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
62266787 ATATGTGATAAGGCC
131 ATATGTGATAAGGCC
* * *
62266802 TAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
62266867 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
62266932 ATATGTGATAAGGCC
131 ATATGTGATAAGGCC
*
62266947 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
* * * * * *
62267012 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGG-CGAACGTGATGGATGTGAAAGTGTATA
66 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG-ATGTGATGAATGTGAAAGTGTATA
62267074 -A-ATGTGATAAG
130 TATATGTGATAAG
62267085 TCCCGAAGGG
Statistics
Matches: 415, Mismatches: 12, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
141 10 0.02
142 3 0.01
143 42 0.10
145 332 0.80
147 28 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCC
Found at i:62275142 original size:17 final size:17
Alignment explanation
Indices: 62275122--62275154 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
62275112 CTTTTATTAA
62275122 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
62275139 GTTTTTAAGATTCATT
1 GTTTTTAAGATTCATT
62275155 TGTTCTCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.09, G:0.12, T:0.55
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:62287758 original size:40 final size:40
Alignment explanation
Indices: 62287703--62287844 Score: 216
Period size: 40 Copynumber: 3.6 Consensus size: 40
62287693 TATTCGAATG
62287703 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
62287743 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
62287783 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
62287823 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
62287845 TACTTGGGTT
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 14 0.15
40 77 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:62288094 original size:41 final size:41
Alignment explanation
Indices: 62288048--62288132 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
62288038 GTGTGAAGTA
62288048 AGTGTGATTTTGCGAATATGCGTATATGCAACTATTCATTT
1 AGTGTGATTTTGCGAATATGCGTATATGCAACTATTCATTT
*
62288089 AGTGTGATTTTGGGAATATGCGTATATGCAACTATTCATTT
1 AGTGTGATTTTGCGAATATGCGTATATGCAACTATTCATTT
62288130 AGT
1 AGT
62288133 CATATGAACG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (41 bp):
AGTGTGATTTTGCGAATATGCGTATATGCAACTATTCATTT
Found at i:62294925 original size:11 final size:11
Alignment explanation
Indices: 62294899--62294933 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
62294889 AAAAAATTAG
62294899 ATTTTTATTTT
1 ATTTTTATTTT
*
62294910 A-TTTTGTTTT
1 ATTTTTATTTT
62294920 ATTTTTATTTT
1 ATTTTTATTTT
62294931 ATT
1 ATT
62294934 AAGTTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:62294939 original size:21 final size:21
Alignment explanation
Indices: 62294899--62294940 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
62294889 AAAAAATTAG
**
62294899 ATTTTTATTTTATTTTGTTTT
1 ATTTTTATTTTATTAAGTTTT
62294920 ATTTTTATTTTATTAAGTTTT
1 ATTTTTATTTTATTAAGTTTT
62294941 TAAGATTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (21 bp):
ATTTTTATTTTATTAAGTTTT
Found at i:62294956 original size:17 final size:17
Alignment explanation
Indices: 62294936--62294968 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
62294926 ATTTTATTAA
62294936 GTTTTTAAGATTCATTC
1 GTTTTTAAGATTCATTC
62294953 GTTTTTAAGATTCATT
1 GTTTTTAAGATTCATT
62294969 TGTTCTCCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.09, G:0.12, T:0.55
Consensus pattern (17 bp):
GTTTTTAAGATTCATTC
Found at i:62297092 original size:50 final size:50
Alignment explanation
Indices: 62296974--62297251 Score: 283
Period size: 50 Copynumber: 5.5 Consensus size: 50
62296964 TTGGTACGCA
* * * * *
62296974 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCCGGTACACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACTATCTGATACACG
* *
62297023 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACTATCTGATACACG
* ** * * * * * *
62297073 TAGTAGCCTACACTTAGTACTACACACGTTATCGAAGTTGTCGGGCATGCA--
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CTATC-TG-ATACACG
* *
62297124 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACTATCTGATACACG
* * * *
62297174 TAGTAGCCTGCACTTAGTATTACACACGCGACCTAAAACTATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCT--AACTATCTGATACACG
*
62297226 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
62297252 TGTGTTCTCA
Statistics
Matches: 187, Mismatches: 34, Indels: 13
0.80 0.15 0.06
Matches are distributed among these distances:
48 3 0.02
49 32 0.17
50 79 0.42
51 32 0.17
52 37 0.20
53 4 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACTATCTGATACACG
Found at i:62301387 original size:40 final size:40
Alignment explanation
Indices: 62301342--62301482 Score: 158
Period size: 40 Copynumber: 3.5 Consensus size: 40
62301332 AGGTATAAAT
** *
62301342 AGGGCACGTATGTGCATTTGGGGGTACCAAAGTACAAAAA
1 AGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAAAA
* * * *
62301382 AGGGCACATATGTGCACTCAAGGGTACCGAAGTAC-AAAC
1 AGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAAAA
* ** *
62301421 AGGGCCACGTATGTGCATTCAGGGGCATTGAAGTACAAACA
1 AGGG-CACGTATGTGCATTCAGGGGTACCGAAGTACAAAAA
*
62301462 TGGGCACGTATGTGCATTCAG
1 AGGGCACGTATGTGCATTCAG
62301483 TAATAGTTAT
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
39 7 0.08
40 71 0.86
41 5 0.06
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.20
Consensus pattern (40 bp):
AGGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAAAA
Found at i:62305423 original size:21 final size:22
Alignment explanation
Indices: 62305382--62305424 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
62305372 CATGATGATG
*
62305382 TCAATGCAAACCTTTTTAGAAA
1 TCAATGCAAACCTTTTCAGAAA
*
62305404 TCAATGCAAA-GTTTTCAGAAA
1 TCAATGCAAACCTTTTCAGAAA
62305425 ACGTTCCTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (22 bp):
TCAATGCAAACCTTTTCAGAAA
Found at i:62310036 original size:18 final size:18
Alignment explanation
Indices: 62310015--62310070 Score: 51
Period size: 17 Copynumber: 3.0 Consensus size: 18
62310005 ATTTGATGCA
62310015 ATTTTTTTATTTATTTTT
1 ATTTTTTTATTTATTTTT
* *
62310033 A-TTTTTAATTAATTTTTT
1 ATTTTTTTATTTA-TTTTT
*
62310051 ATTTGTTATTCTTTATTTTT
1 ATTT-TT-TTATTTATTTTT
62310071 TGTGATTTTC
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
17 9 0.31
18 7 0.24
19 2 0.07
20 7 0.24
21 4 0.14
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (18 bp):
ATTTTTTTATTTATTTTT
Found at i:62310137 original size:23 final size:23
Alignment explanation
Indices: 62310107--62310154 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
62310097 AGCATAAATC
62310107 GAATCATCAATTTACTCCCTATA
1 GAATCATCAATTTACTCCCTATA
*
62310130 GAATCATCAGTTTACTCCCTATA
1 GAATCATCAATTTACTCCCTATA
62310153 GA
1 GA
62310155 CCTTGAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33
Consensus pattern (23 bp):
GAATCATCAATTTACTCCCTATA
Found at i:62310727 original size:66 final size:65
Alignment explanation
Indices: 62310612--62310735 Score: 203
Period size: 66 Copynumber: 1.9 Consensus size: 65
62310602 AATCCTATTA
62310612 AATATACTAAATAGCAGGAAATACTATTAAACTGAATAAAAAGTGGATATAATGTAATTTACTGC
1 AATATACTAAATAGCAGGAAATACTATTAAACTGAATAAAAAGTGGATATAATG-AATTTACTGC
62310677 T
65 T
* * * *
62310678 AATATACTAAATAGCAGGAAATGCTATTAAGCTGAATAAGAAGTTGATATAATGAATT
1 AATATACTAAATAGCAGGAAATACTATTAAACTGAATAAAAAGTGGATATAATGAATT
62310736 AATGTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
65 4 0.07
66 50 0.93
ACGTcount: A:0.47, C:0.08, G:0.15, T:0.30
Consensus pattern (65 bp):
AATATACTAAATAGCAGGAAATACTATTAAACTGAATAAAAAGTGGATATAATGAATTTACTGCT
Found at i:62314022 original size:20 final size:21
Alignment explanation
Indices: 62313986--62314024 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62313976 ACAAGGGAAT
62313986 TACAATCAACAACAACAGAAC
1 TACAATCAACAACAACAGAAC
*
62314007 TACAATCAGC-ACAACAGA
1 TACAATCAACAACAACAGA
62314025 TGCATCCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.54, C:0.28, G:0.08, T:0.10
Consensus pattern (21 bp):
TACAATCAACAACAACAGAAC
Found at i:62319410 original size:24 final size:23
Alignment explanation
Indices: 62319385--62319732 Score: 179
Period size: 24 Copynumber: 14.6 Consensus size: 23
62319375 TGTTAACCCA
*
62319385 CACACATAGTGCCTTAGTAATTCA
1 CACACATAGTGCCTTA-TAATTCG
* * * *
62319409 CATACATATTGACATTCA-AATCCG
1 CACACATAGTG-CCTT-ATAATTCG
* *
62319433 CACACATAGTGCCATATAAATCTG
1 CACACATAGTGCCTTATAATTC-G
* * *
62319457 CACATATAGTGCCATACAAATTCG
1 CACACATAGTGCCTTA-TAATTCG
*
62319481 CACACATAGTGCCTTAGTAATTCA
1 CACACATAGTGCCTTA-TAATTCG
* * * *
62319505 CATACATATTGACATTCA-AATCCG
1 CACACATAGTG-CCTT-ATAATTCG
* **
62319529 CACACATAGTGCCATATAAACCCG
1 CACACATAGTGCCTTAT-AATTCG
* * *
62319553 CACATATAGTGCCATACAATTCG
1 CACACATAGTGCCTTATAATTCG
*
62319576 CACACATAGTGCCTTAGTAATTCA
1 CACACATAGTGCCTTA-TAATTCG
* * *
62319600 CATACATATTGACATTCA-AA-TCTG
1 CACACATAGTG-CCTT-ATAATTC-G
* *
62319624 CACACATAGTGCCATACAAATTCG
1 CACACATAGTGCCTTA-TAATTCG
*
62319648 CACACATAGTACCATTCA-AA-TCTG
1 CACACATAGTGCC-TT-ATAATTC-G
* *
62319672 CACACATAGTGCCATACAAATTCG
1 CACACATAGTGCCTTA-TAATTCG
* *
62319696 CACACATAGTACCATTCA-AATTAG
1 CACACATAGTGCC-TT-ATAATTCG
62319720 CACACATAGTGCC
1 CACACATAGTGCC
62319733 AAAGTCATTT
Statistics
Matches: 247, Mismatches: 53, Indels: 48
0.71 0.15 0.14
Matches are distributed among these distances:
22 4 0.02
23 32 0.13
24 187 0.76
25 19 0.08
26 5 0.02
ACGTcount: A:0.36, C:0.27, G:0.11, T:0.26
Consensus pattern (23 bp):
CACACATAGTGCCTTATAATTCG
Found at i:62319438 original size:48 final size:48
Alignment explanation
Indices: 62319385--62319733 Score: 327
Period size: 48 Copynumber: 7.3 Consensus size: 48
62319375 TGTTAACCCA
*
62319385 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCG
1 CACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAATCCG
* * * *
62319433 CACACATAGTGCCATA-TAAATCTGCACAT--ATAGTGCCATACAAATTCG
1 CACACATAGTGCCATAGT-AAT-T-CACATACATATTGACATTCAAATCCG
*
62319481 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCG
1 CACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAATCCG
* * ** * * *
62319529 CACACATAGTGCCATA-TAA-ACCCGCACATATAGTGCCATAC-AATTCG
1 CACACATAGTGCCATAGTAATTCACATACATAT--TGACATTCAAATCCG
* *
62319576 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCTG
1 CACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAATCCG
** * * * *
62319624 CACACATAGTGCCATACAAATTCGCACACATAGT-ACCATTCAAATCTG
1 CACACATAGTGCCATAGTAATTCACATACATATTGA-CATTCAAATCCG
** * * * **
62319672 CACACATAGTGCCATACAAATTCGCACACATAGT-ACCATTCAAATTAG
1 CACACATAGTGCCATAGTAATTCACATACATATTGA-CATTCAAATCCG
62319720 CACACATAGTGCCA
1 CACACATAGTGCCA
62319734 AAGTCATTTC
Statistics
Matches: 254, Mismatches: 35, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
46 13 0.05
47 32 0.13
48 194 0.76
49 10 0.04
50 5 0.02
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.26
Consensus pattern (48 bp):
CACACATAGTGCCATAGTAATTCACATACATATTGACATTCAAATCCG
Found at i:62319486 original size:96 final size:96
Alignment explanation
Indices: 62319385--62319733 Score: 508
Period size: 96 Copynumber: 3.6 Consensus size: 96
62319375 TGTTAACCCA
62319385 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATAT
1 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATAT
62319450 AAATCTGCACATATAGTGCCATACAAATTCG
66 AAATCTGCACATATAGTGCCATACAAATTCG
62319481 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATAT
1 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATAT
* *
62319546 AAACCCGCACATATAGTGCCATAC-AATTCG
66 AAATCTGCACATATAGTGCCATACAAATTCG
* *
62319576 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCTGCACACATAGTGCCATAC
1 CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATAT
* * *
62319641 AAAT-TCGCACACATAGTACCATTCAAA-TCTG
66 AAATCT-GCACATATAGTGCCATACAAATTC-G
* ** * * * **
62319672 CACACATAGTGCCATACAAATTCGCACACATAGT-ACCATTCAAATTAGCACACATAGTGCCA
1 CACACATAGTGCCTTAGTAATTCACATACATATTGA-CATTCAAATCCGCACACATAGTGCCA
62319734 AAGTCATTTC
Statistics
Matches: 232, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
95 90 0.39
96 142 0.61
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.26
Consensus pattern (96 bp):
CACACATAGTGCCTTAGTAATTCACATACATATTGACATTCAAATCCGCACACATAGTGCCATAT
AAATCTGCACATATAGTGCCATACAAATTCG
Found at i:62320181 original size:16 final size:16
Alignment explanation
Indices: 62320160--62320191 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
62320150 ATTACTTCAA
62320160 ATAAACACACATATAT
1 ATAAACACACATATAT
*
62320176 ATAAACACATATATAT
1 ATAAACACACATATAT
62320192 TTTTGTACAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAACACACATATAT
Found at i:62322346 original size:23 final size:23
Alignment explanation
Indices: 62322287--62322346 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
62322277 TGTCTCAATG
* * *
62322287 CACACTGGCGTGTACATTGCCTC
1 CACACGGGCGTGTGCATTACCTC
*
62322310 CACACGGGCATGTGCATTACCTC
1 CACACGGGCGTGTGCATTACCTC
*
62322333 CACACGGGTGTGTG
1 CACACGGGCGTGTG
62322347 AGGCTTAAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.18, C:0.32, G:0.27, T:0.23
Consensus pattern (23 bp):
CACACGGGCGTGTGCATTACCTC
Found at i:62324913 original size:27 final size:27
Alignment explanation
Indices: 62324883--62325041 Score: 112
Period size: 27 Copynumber: 5.9 Consensus size: 27
62324873 ACCCCCCAAT
* *
62324883 TTGTAAAATTACTGAAATACCCCTGGC
1 TTGTAAAATTACTGAAATACCCCTCGA
*
62324910 TTGTAAAATTATTGAAATA-CCCTCGA
1 TTGTAAAATTACTGAAATACCCCTCGA
* *
62324936 TATGTAAAATTACCGAAATACCCC-CAA
1 T-TGTAAAATTACTGAAATACCCCTCGA
** * * * *
62324963 TTTGTAAGGTTATTAAAATAGCCCC-GGG
1 -TTGTAAAATTACTGAAATA-CCCCTCGA
*
62324991 TTATAAAATTA-TCGAAATA-CCCTCGA
1 TTGTAAAATTACT-GAAATACCCCTCGA
* *
62325017 TTTGTGAAATTACTAAAATACCCCT
1 -TTGTAAAATTACTGAAATACCCCT
62325042 ATAGGGTAGG
Statistics
Matches: 100, Mismatches: 23, Indels: 17
0.71 0.16 0.12
Matches are distributed among these distances:
25 3 0.03
26 8 0.08
27 76 0.76
28 13 0.13
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCCTCGA
Found at i:62324968 original size:54 final size:53
Alignment explanation
Indices: 62324883--62325040 Score: 156
Period size: 54 Copynumber: 2.9 Consensus size: 53
62324873 ACCCCCCAAT
* * ** *
62324883 TTGTAAAATTACTGAAATACCCCTGGCTTGTAAAATTATTGAAATACCCTC-GA
1 TTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTATTAAAATACCC-CGGA
* ** *
62324936 TATGTAAAATTACCGAAATACCCCCAATTTGTAAGGTTATTAAAATAGCCCCGGG
1 T-TGTAAAATTACCGAAATACCCCCGATTTGTAAAATTATTAAAATA-CCCCGGA
* * * * *
62324991 TTATAAAATTATCGAAATACCCTCGATTTGTGAAATTACTAAAATACCCC
1 TTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTATTAAAATACCCC
62325041 TATAGGGTAG
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
53 5 0.06
54 75 0.88
55 5 0.06
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (53 bp):
TTGTAAAATTACCGAAATACCCCCGATTTGTAAAATTATTAAAATACCCCGGA
Found at i:62324982 original size:81 final size:81
Alignment explanation
Indices: 62324875--62325040 Score: 217
Period size: 81 Copynumber: 2.0 Consensus size: 81
62324865 TCATTAAGAC
* * *
62324875 CCCCCAATTTGTAAAATTACTGAAATA-CCCCTGGCTTGTAAAATTATTGAAATACCCTCGATAT
1 CCCCCAATTTGTAAAATTACTAAAATAGCCCC-GGCTTATAAAATTATCGAAATACCCTCGATAT
*
62324939 GTAAAATTACCGAAATA
65 GTAAAATTACCAAAATA
** * * *
62324956 CCCCCAATTTGTAAGGTTATTAAAATAGCCCCGGGTTATAAAATTATCGAAATACCCTCGATTTG
1 CCCCCAATTTGTAAAATTACTAAAATAGCCCCGGCTTATAAAATTATCGAAATACCCTCGATATG
* *
62325021 TGAAATTACTAAAATA
66 TAAAATTACCAAAATA
62325037 CCCC
1 CCCC
62325041 TATAGGGTAG
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
81 69 0.95
82 4 0.05
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.30
Consensus pattern (81 bp):
CCCCCAATTTGTAAAATTACTAAAATAGCCCCGGCTTATAAAATTATCGAAATACCCTCGATATG
TAAAATTACCAAAATA
Found at i:62325063 original size:81 final size:81
Alignment explanation
Indices: 62324896--62325066 Score: 186
Period size: 81 Copynumber: 2.1 Consensus size: 81
62324886 TAAAATTACT
* * *
62324896 GAAATACCCCTGGCTTGTAAAATTATTGAAATACCCTCGATATGTAAAATTACCGAAATACCCCC
1 GAAATACCCCTGGCTTATAAAATTATCGAAATACCCTCGATATGTAAAATTACCAAAATACCCCC
** *
62324961 AATTTGTAAGGTTATT
66 AATGGGTAAGGTTATC
* * * * *
62324977 AAAATAGCCCC-GGGTTATAAAATTATCGAAATACCCTCGATTTGTGAAATTACTAAAATA-CCC
1 GAAATA-CCCCTGGCTTATAAAATTATCGAAATACCCTCGATATGTAAAATTACCAAAATACCCC
*
62325040 CTATAGGGT-AGGATTATC
65 CAAT-GGGTAAGG-TTATC
62325058 GAAATACCC
1 GAAATACCC
62325067 TTATAGGGTA
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
80 12 0.16
81 58 0.78
82 4 0.05
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (81 bp):
GAAATACCCCTGGCTTATAAAATTATCGAAATACCCTCGATATGTAAAATTACCAAAATACCCCC
AATGGGTAAGGTTATC
Found at i:62325129 original size:26 final size:26
Alignment explanation
Indices: 62325064--62325134 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 26
62325054 TATCGAAATA
62325064 CCCTTATAGGGTAAAATGACCATTTTG
1 CCCTTATA-GGTAAAATGACCATTTTG
* **
62325091 CCC-TAAAGAGTAAAATGATTATTTTG
1 CCCTTATAG-GTAAAATGACCATTTTG
*
62325117 CCCTTGTAGGT-AAATGAC
1 CCCTTATAGGTAAAATGAC
62325135 GGACTTGGGC
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
25 7 0.19
26 23 0.64
27 6 0.17
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Consensus pattern (26 bp):
CCCTTATAGGTAAAATGACCATTTTG
Found at i:62325907 original size:31 final size:33
Alignment explanation
Indices: 62325862--62325926 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
62325852 TGTCACTGTA
* *
62325862 TTGGGCTTAGGCCCACTTG-TTCTGTTATTGGT
1 TTGGGCTTAGGCCCAATTGATTCTGTTATGGGT
62325894 TTGGGC-TAGGCCCAATTGATTCTGTTATGGGT
1 TTGGGCTTAGGCCCAATTGATTCTGTTATGGGT
62325926 T
1 T
62325927 GTGACCCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 11 0.37
32 19 0.63
ACGTcount: A:0.12, C:0.17, G:0.29, T:0.42
Consensus pattern (33 bp):
TTGGGCTTAGGCCCAATTGATTCTGTTATGGGT
Found at i:62326526 original size:16 final size:17
Alignment explanation
Indices: 62326494--62326526 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
62326484 AAATAAGAAG
62326494 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
62326512 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
62326527 CTTTAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:62329128 original size:27 final size:26
Alignment explanation
Indices: 62329093--62329251 Score: 115
Period size: 27 Copynumber: 6.0 Consensus size: 26
62329083 TTAAGACCCA
* *
62329093 TGATCTGTAAAATTACTTAAATACCT
1 TGATTTGTAAAATTACTGAAATACCT
** * * *
62329119 TCGGCTTGTAAAATTACAGAAATCCCC
1 T-GATTTGTAAAATTACTGAAATACCT
* **
62329146 TAATTTGTAAAATTACCAAAATACCCT
1 TGATTTGTAAAATTACTGAAATA-CCT
*
62329173 TGATTTGTAAAATTATTGAAATACCCT
1 TGATTTGTAAAATTACTGAAATA-CCT
*
62329200 T-AGGTTGTAAAATTACTGAAATACCCT
1 TGA-TTTGTAAAATTACTGAAATA-CCT
* * * *
62329227 CGATTTATGAAATTACCG-AATACCT
1 TGATTTGTAAAATTACTGAAATACCT
62329252 CTATAGGGTA
Statistics
Matches: 104, Mismatches: 25, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
25 3 0.03
26 22 0.21
27 78 0.75
28 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (26 bp):
TGATTTGTAAAATTACTGAAATACCT
Found at i:62329181 original size:53 final size:54
Alignment explanation
Indices: 62329098--62329250 Score: 150
Period size: 54 Copynumber: 2.9 Consensus size: 54
62329088 ACCCATGATC
* ** *
62329098 TGTAAAATTACTTAAATA-CCTTCGGCTTGTAAAATTACAGAAAT-CCCCTAATT
1 TGTAAAATTACTAAAATACCCTT-GATTTGTAAAATTACAGAAATACCCCTAAGT
* ** * *
62329151 TGTAAAATTACCAAAATACCCTTGATTTGTAAAATTATTGAAATACCCTTAGGT
1 TGTAAAATTACTAAAATACCCTTGATTTGTAAAATTACAGAAATACCCCTAAGT
* * * * *
62329205 TGTAAAATTACTGAAATACCCTCGATTTATGAAATTACCG-AATACC
1 TGTAAAATTACTAAAATACCCTTGATTTGTAAAATTACAGAAATACC
62329251 TCTATAGGGT
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
53 39 0.48
54 43 0.52
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (54 bp):
TGTAAAATTACTAAAATACCCTTGATTTGTAAAATTACAGAAATACCCCTAAGT
Found at i:62329250 original size:80 final size:80
Alignment explanation
Indices: 62329088--62329243 Score: 199
Period size: 80 Copynumber: 1.9 Consensus size: 80
62329078 GGTCGTTAAG
* * *
62329088 ACCCATGATCTGTAAAATTACTTAAATACCTTCGGCTTGTAAAATTACAGAAATCCCCTAATTTG
1 ACCCATGATCTGTAAAATTACTTAAATACCTTAGGCTTGTAAAATTACAGAAATACCCTAATTTA
62329153 TAAAATTACCAAAAT
66 TAAAATTACCAAAAT
* * * *
62329168 ACCCTTGATTTGTAAAATTA-TTGAAATACCCTTAGG-TTGTAAAATTACTGAAATACCCTCGAT
1 ACCCATGATCTGTAAAATTACTT-AAATA-CCTTAGGCTTGTAAAATTACAGAAATACCCT-AAT
*
62329231 TTATGAAATTACC
63 TTATAAAATTACC
62329244 GAATACCTCT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
79 2 0.03
80 44 0.68
81 19 0.29
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (80 bp):
ACCCATGATCTGTAAAATTACTTAAATACCTTAGGCTTGTAAAATTACAGAAATACCCTAATTTA
TAAAATTACCAAAAT
Found at i:62333381 original size:27 final size:27
Alignment explanation
Indices: 62333342--62333505 Score: 188
Period size: 27 Copynumber: 6.1 Consensus size: 27
62333332 GGTCATTAAG
*
62333342 ACCCTCGATTTGTAAAATTACTAAAAT
1 ACCCCCGATTTGTAAAATTACTAAAAT
*
62333369 ACCCCCGACTTGTAAAATTACTAAAAT
1 ACCCCCGATTTGTAAAATTACTAAAAT
*
62333396 ACCCCCGATTTGTAAAATTACTGAAAT
1 ACCCCCGATTTGTAAAATTACTAAAAT
* *
62333423 ACCCCCGATTTG-AAAAATACTAAAAC
1 ACCCCCGATTTGTAAAATTACTAAAAT
* * * *
62333449 ACCCTC-AGGTTGTAAAATTAATGAAAT
1 ACCCCCGA-TTTGTAAAATTACTAAAAT
* * * *
62333476 ACCCTCAATTTGTGAAATTACCAAAAT
1 ACCCCCGATTTGTAAAATTACTAAAAT
62333503 ACC
1 ACC
62333506 TTTATAGTGT
Statistics
Matches: 116, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.01
26 19 0.16
27 95 0.82
28 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (27 bp):
ACCCCCGATTTGTAAAATTACTAAAAT
Found at i:62333462 original size:80 final size:81
Alignment explanation
Indices: 62333342--62333505 Score: 197
Period size: 80 Copynumber: 2.0 Consensus size: 81
62333332 GGTCATTAAG
* * * * * *
62333342 ACCCTCGATTTGTAAAATTACTAAAATACCCCCGACTTGTAAAATTACTAAAATACCCCCGATTT
1 ACCCCCGATTTGTAAAAATACTAAAACACCCCAGACTTGTAAAATTAATAAAATACCCCCAATTT
**
62333407 GTAAAATTACTGAAAT
66 GTAAAATTACCAAAAT
* * *
62333423 ACCCCCGATTTG-AAAAATACTAAAACACCCTCAG-GTTGTAAAATTAATGAAATACCCTCAATT
1 ACCCCCGATTTGTAAAAATACTAAAACACCC-CAGACTTGTAAAATTAATAAAATACCCCCAATT
*
62333486 TGTGAAATTACCAAAAT
65 TGTAAAATTACCAAAAT
62333503 ACC
1 ACC
62333506 TTTATAGTGT
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
80 57 0.81
81 13 0.19
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (81 bp):
ACCCCCGATTTGTAAAAATACTAAAACACCCCAGACTTGTAAAATTAATAAAATACCCCCAATTT
GTAAAATTACCAAAAT
Found at i:62333487 original size:53 final size:54
Alignment explanation
Indices: 62333351--62333488 Score: 172
Period size: 53 Copynumber: 2.6 Consensus size: 54
62333341 GACCCTCGAT
* * * * * *
62333351 TTGTAAAATTACTAAAATACCCCCGACTTGTAAAATTACTAAAATACCCCCGAT
1 TTGTAAAATTACTGAAATACCCCCGATTTGTAAAAATACTAAAACACCCCAGAG
62333405 TTGTAAAATTACTGAAATACCCCCGATTTG-AAAAATACTAAAACACCCTCAG-G
1 TTGTAAAATTACTGAAATACCCCCGATTTGTAAAAATACTAAAACACCC-CAGAG
* * *
62333458 TTGTAAAATTAATGAAATACCCTCAATTTGT
1 TTGTAAAATTACTGAAATACCCCCGATTTGT
62333489 GAAATTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
53 43 0.59
54 30 0.41
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (54 bp):
TTGTAAAATTACTGAAATACCCCCGATTTGTAAAAATACTAAAACACCCCAGAG
Found at i:62333930 original size:22 final size:22
Alignment explanation
Indices: 62333877--62333941 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
62333867 GCTGCGTAAT
*
62333877 CTAATTATGGCTCTGTGCCAAC
1 CTAAATATGGCTCTGTGCCAAC
* *
62333899 CTAAAAATGGCTCTGTGCCATC
1 CTAAATATGGCTCTGTGCCAAC
* * * *
62333921 TTGACTATGGCTTTGTGCCAA
1 CTAAATATGGCTCTGTGCCAA
62333942 ACGTATTTAC
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (22 bp):
CTAAATATGGCTCTGTGCCAAC
Found at i:62346841 original size:27 final size:27
Alignment explanation
Indices: 62346793--62346951 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
62346783 ACGAGGCTGC
* * *
62346793 CAGATATTGTGAC-GAAGTCACCTGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
62346820 CAGATATTGTGGCAGAGCCACCATA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
62346846 CAGATATATGTGGTAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
62346873 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
62346900 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
62346927 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
62346952 GACGCTTCCT
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
26 10 0.09
27 97 0.87
28 5 0.04
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:62346952 original size:54 final size:54
Alignment explanation
Indices: 62346811--62346954 Score: 227
Period size: 54 Copynumber: 2.7 Consensus size: 54
62346801 GTGACGAAGT
* * ** *
62346811 CACCTGATACAGAT-ATTGTGGCAGAGCCACCATAACAGATATATGTGGTAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
62346865 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
62346919 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
62346955 GCTTCCTCCA
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
53 5 0.06
54 79 0.94
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:62354344 original size:17 final size:17
Alignment explanation
Indices: 62354322--62354354 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
62354312 GTTACTGCAC
62354322 ATTGTCATTGCATTTTT
1 ATTGTCATTGCATTTTT
62354339 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
62354355 AATGTTAGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:62358967 original size:30 final size:30
Alignment explanation
Indices: 62358922--62358981 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
62358912 ATTTAATAAG
*
62358922 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
62358952 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
62358982 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:62363452 original size:24 final size:24
Alignment explanation
Indices: 62363420--62363468 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
62363410 TTTAGTTGCT
62363420 CATAAGCTATTGATTAAACCCATA
1 CATAAGCTATTGATTAAACCCATA
62363444 CATAAGCTATTGATTAAACCCATA
1 CATAAGCTATTGATTAAACCCATA
62363468 C
1 C
62363469 GTGAATTCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (24 bp):
CATAAGCTATTGATTAAACCCATA
Found at i:62363784 original size:47 final size:47
Alignment explanation
Indices: 62363730--62364105 Score: 580
Period size: 47 Copynumber: 8.1 Consensus size: 47
62363720 TTAGGATTTT
** * * *
62363730 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
62363777 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
62363824 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
62363871 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
62363918 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
62363965 ATGTGATGAATGTG-ATATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
62364011 ATGTGATGAATGTGAACATGCATATAT-TGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
62364057 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAA-GCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
62364103 ATG
1 ATG
62364106 CGAAATGTGT
Statistics
Matches: 310, Mismatches: 16, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
46 95 0.31
47 215 0.69
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:62364063 original size:22 final size:22
Alignment explanation
Indices: 62363944--62364063 Score: 54
Period size: 22 Copynumber: 5.3 Consensus size: 22
62363934 CATGCATATG
*
62363944 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
* * *
62363966 TGTGATGAATG-TGATAT-GCATATA
1 TGTGAT-AAGGCAGA-ATGGC-CA-A
*
62363990 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
62364012 TGTGATGAATGTG-A-ACAT-G-CATA
1 TGTGAT-AA-G-GCAGA-ATGGCCA-A
*
62364035 TATTGATAAGGCAGAATGGCCAA
1 T-GTGATAAGGCAGAATGGCCAA
62364058 TGTGAT
1 TGTGAT
62364064 GAACGTGGAA
Statistics
Matches: 73, Mismatches: 9, Indels: 32
0.64 0.08 0.28
Matches are distributed among these distances:
21 1 0.01
22 27 0.37
23 24 0.33
24 20 0.27
25 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (22 bp):
TGTGATAAGGCAGAATGGCCAA
Found at i:62364139 original size:46 final size:46
Alignment explanation
Indices: 62364080--62364261 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
62364070 GGAAGTGTAT
* *
62364080 ATATGTGGT-AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
62364125 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
62364171 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * **
62364217 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
62364262 TGTATATATA
Statistics
Matches: 128, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
45 8 0.06
46 120 0.94
ACGTcount: A:0.34, C:0.09, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:62364144 original size:92 final size:90
Alignment explanation
Indices: 62363753--62364151 Score: 385
Period size: 94 Copynumber: 4.3 Consensus size: 90
62363743 GAATGTGTAT
* * * * * *
62363753 ATATGAGATAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAA
1 ATATGAGGTAAAGCCGAATGGCCAATGTGATGAACGTGAA-GTGCATATATGTGATAAGGCCGAA
*
62363818 TGGCCAATGTGATGAATGTGAACATGC
65 TGGCCAATGCGA-GAATGTGAACATGC
* * * *
62363845 ATAT-ATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCC
1 ATATGA-G-G-TAAAGCCGAATGGCCAATGTGATGAACGTGAA-GTGCATATATGTGATAAGGCC
*
62363909 GAATGGCCAATGTGATGAATGTGAACATGC
62 GAATGGCCAATGCGA-GAATGTGAACATGC
* * *
62363939 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGATA-TGCATATATGTGATAAGGCCG
1 ATATGAG-G-TAAAGCCGAATGGCCAATGTGATGAACGTGA-AGTGCATATATGTGATAAGGCCG
*
62364003 AATGGCCAATGTGATGAATGTGAACATGC
63 AATGGCCAATGCGA-GAATGTGAACATGC
* * * * *
62364032 ATAT-ATTGATAAGGCAGAATGGCCAATGTGATGAACGTGGAAGTGTATATATGTGGTAA-GCCG
1 ATATGA--GGTAAAGCCGAATGGCCAATGTGATGAACGT-GAAGTGCATATATGTGATAAGGCCG
* * *
62364095 AATGGCTAATGCGA-AATGTGTATGAGATGG
63 AATGGCCAATGCGAGAATGTG-A--ACATGC
*
62364125 ATATGAGGTAAAGCCGAATGGCTAATG
1 ATATGAGGTAAAGCCGAATGGCCAATG
62364152 CGAAACGTGT
Statistics
Matches: 274, Mismatches: 20, Indels: 26
0.86 0.06 0.08
Matches are distributed among these distances:
90 6 0.02
91 2 0.01
92 66 0.24
93 77 0.28
94 122 0.45
95 1 0.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.25
Consensus pattern (90 bp):
ATATGAGGTAAAGCCGAATGGCCAATGTGATGAACGTGAAGTGCATATATGTGATAAGGCCGAAT
GGCCAATGCGAGAATGTGAACATGC
Found at i:62369956 original size:30 final size:30
Alignment explanation
Indices: 62369911--62369970 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
62369901 ATTTAATATG
*
62369911 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
62369941 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
62369971 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:62376988 original size:49 final size:51
Alignment explanation
Indices: 62376933--62377056 Score: 173
Period size: 52 Copynumber: 2.5 Consensus size: 51
62376923 TTGAATTTTA
* * *
62376933 AAAACTCTTTTAAATAATAAT-TTAAATTCT-ATTTAATT-TTCTTTTATTT
1 AAAACTCTTTTAAATAATAATATTAAATTATGATTTAATTATT-ATTTATCT
*
62376982 AAAACTCTTTTAAATAATAATAATTAAATTATGTTTTAATTATTATTTATCT
1 AAAACTCTTTTAAATAATAAT-ATTAAATTATGATTTAATTATTATTTATCT
62377034 AAAACTCTTTTAAATAATAATAT
1 AAAACTCTTTTAAATAATAATAT
62377057 ATTTGTTATT
Statistics
Matches: 67, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
49 21 0.31
51 10 0.15
52 34 0.51
53 2 0.03
ACGTcount: A:0.42, C:0.07, G:0.01, T:0.50
Consensus pattern (51 bp):
AAAACTCTTTTAAATAATAATATTAAATTATGATTTAATTATTATTTATCT
Found at i:62377047 original size:38 final size:38
Alignment explanation
Indices: 62377018--62377091 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
62377008 AATTATGTTT
*
62377018 TAATTATTATTTATCTAAAACTCTTTTAAATAATAATA
1 TAATTATTATTTATCTAAAACTCATTTAAATAATAATA
* *
62377056 TATTTGTTATTTATCTAAAACTCATTTAAATAATAA
1 TAATTATTATTTATCTAAAACTCATTTAAATAATAA
62377092 CTAAATTCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.43, C:0.08, G:0.01, T:0.47
Consensus pattern (38 bp):
TAATTATTATTTATCTAAAACTCATTTAAATAATAATA
Found at i:62377250 original size:94 final size:93
Alignment explanation
Indices: 62377062--62377252 Score: 273
Period size: 94 Copynumber: 2.1 Consensus size: 93
62377052 AATATATTTG
*
62377062 TTATTTATCTAAAACTCATTTAAATAATAACTAAATTCTATTTCCTTATTTGATAAAGAATATAT
1 TTATTTATCTAAAACTCATTTAAATAATAACTAAATTCTATTTCCTTATCTGATAAAGAATATAT
* *
62377127 CAAATCCTTTTGATTTTGAATTTTAATTA
66 CAAATCCTTTT-ATTATCAATTTTAATTA
* *
62377156 TTATTTATCTAAAACTCTTTTAAATAATAATTAAATTCTATTTCCTTATCTGAT-AAGAAATATA
1 TTATTTATCTAAAACTCATTTAAATAATAACTAAATTCTATTTCCTTATCTGATAAAG-AATATA
*
62377220 TCAAATCCTCTTT-TTATC-AGTTT-ATTA
65 TCAAATCCT-TTTATTATCAATTTTAATTA
62377247 TTATTT
1 TTATTT
62377253 TTGAATTTAA
Statistics
Matches: 89, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
91 10 0.11
92 4 0.04
93 6 0.07
94 66 0.74
95 3 0.03
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.48
Consensus pattern (93 bp):
TTATTTATCTAAAACTCATTTAAATAATAACTAAATTCTATTTCCTTATCTGATAAAGAATATAT
CAAATCCTTTTATTATCAATTTTAATTA
Done.