Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 185 of 345
Found at i:62380920 original size:126 final size:124
Alignment explanation
Indices: 62380396--62382256 Score: 1668
Period size: 125 Copynumber: 15.0 Consensus size: 124
62380386 TTCAGTTAAA
* * * * * *
62380396 AAAAGTACTGAAATAAGCTCCTAGCTGGACTCTATTTTTCTATACTAGTTTCTGAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAATT
* *
62380461 TTGAGAAGATGGTTCTGACAAAATAGGGTAAAAAACGCTTCAAACAGAATGCACTATCAAC
65 TTGAGAAGATGGTTCTGA-AAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * * * * **
62380522 AAAAGTTCTGAAAAAAGCTCCCAACAGAATGCAATTTTTC-TACTGTAGTTT-TGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTTA--GTAGTTTCTGAAAAAATAAT
* * * * * *
62380585 TTTGACAAGATGATTCTAAAAAAATAGGGTAAAAAATGCTTCAAGCAGGATACACTGTCAAC
64 TTTGAGAAGATGGTTCT-GAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* * * * * *
62380647 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTACAATAGTTTGTGAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAATT
* * * * * * *
62380712 TTGAGAATATGGTTCTAAAAAAATATGGT-AAAAACGCTTCAAGCAAGATGCACTGTTAGC
65 TTGAGAAGATGGTTCT-GAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
62380772 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCACTTTTTCTTCAATAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTT-AGTAGTTTCTGAAAAAATAATT
* *
62380836 TTGAGAAGATGGTTCTGAAAAGATAAGGTCAAAAAACGCTTCAAACATGATGCACTGTCAAC
65 TTGAGAAGATGGTTCTGAAAA-ATAGGGT-AAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
62380898 AAAAGTACTGAAAAAAGCTCCCACCTGAACACTCTTTTTCTATAGTAGTTTCTG-AAAAATAA-T
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAATT
* * * *
62380961 TTGAGAAGATGGTTCTG------ACGGTAAAAAACACTTCAAACAGGATGCACTATCAGC
65 TTGAGAAGATGGTTCTGAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* ** * *
62381015 AAAAGTACT-AAAAAAGCTCCTAGTTGGACGCTCTTTTAC-TACTGTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTTA--GTAGTTTCTGAAAAAATAAT
* * * * * * *
62381078 TTTAAAAAGATGGTTATAGAAAAATAGGGTGAAAAACACTTCACGA-AGGATACACTGTCAAC
64 TTTGAGAAGATGGTTCT-GAAAAATAGGGTAAAAAACGCTTCA-AACAGGATGCACTGTCAAC
* * * * * * * *
62381140 AAAAGTATTGAAAAAAACTCCCACTTAGACACTCTTTTTCTACAGTAGTTTTTGAAAAAATGATT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAATT
* * * * * * * *
62381205 TTGAAAAGATGGTTCTAAAAAATATGGTAAAAAACGCTTTAAGCAAGATGCACTGTTAGC
65 TTGAGAAGATGGTTCTGAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
62381265 AAAAGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAATAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAATT
* * * * *
62381329 TTAAGAAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGTATTGTCAAC
65 TTGAGAAGATGGTTCTGAAAA-ATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* ** *
62381390 AAAAGTACTGAAAAAAGCTCCCACCTGAACATTCTTTTTCTATAGTAGTTTTTGAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAATT
* * * * *
62381455 TTGAGAAGATGGTTCCGACAAAATAGGGTAAAAAACGCTTCAACCATGATGCACTATCAGC
65 TTGAGAAGATGGTTCTGA-AAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
** * * *
62381516 AAAAGTACT-AAAAAAGCTCCCAGTTGGATGCTATTTTTC-TACTGTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTTA--GTAGTTTCTGAAAAAATAAT
* * * * * * * * * * *
62381579 TTTAAAAATATGGTTATAGAAAAATAAGG-AAGGATACACTGTC-AACA-AAAGTACTG--AA-
64 TTTGAGAAGATGGTTCT-GAAAAATAGGGTAA-AAAACGCT-TCAAACAGGATGCACTGTCAAC
*** *** *
62381637 AAAA--ACT---CCCA-CTTAGACACT--A---T-TTTTCTAC--AGTAGTTTCTGAACAAATAA
1 AAAAGTACTGAAAAAAGCTCCCAC-CTGGACGCTCTTTT-T-CTTAGTAGTTTCTGAAAAAATAA
* * * * * * * * *
62381688 TTTTGAAAAGATGGTTTTAAAAAATATGGTAAAAAACGCTTCAAGCAAGACGCACTGTTAGC
63 TTTTGAGAAGATGGTTCTGAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* *
62381750 AAAAGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAATAGTTTCT-AAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAATT
* * * *
62381814 TTAAGAAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGCATTGTCAAC
65 TTGAGAAGATGGTTCTGAAAA-ATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
*
62381875 AAAAGTACTGAAAAAAGCTCCCACCTGGACACTCTTTTTCTATAGTAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAATT
* **
62381939 TTGAGAAGATGGTTCTGACAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTATCAGT
65 TTGAGAAGATGGTTCTGA-AAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
* ** * * * *
62382000 AAAAGTACT-AAAAAAGCTCCTAGTTGGACGCTATTTTTCTATTGTAGTTTTTGAAAATATAATT
1 AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAATT
* * * * * * **
62382064 TTAAAAAGATGGTTATAGAAAAATAGGGTAAAAAACACTTCACGA-AGGATACACTCCCAAC
65 TTGAGAAGATGGTTCT-GAAAAATAGGGTAAAAAACGCTTCA-AACAGGATGCACTGTCAAC
* * *
62382125 AAAAGTACTGAAAAAAGCTCCCA--TGAAGACACTCTTTTTCTACAGTAGTTTTTGAAAAAATAA
1 AAAAGTACTGAAAAAAGCTCCCACCTG--GACGCTCTTTTTCT-TAGTAGTTTCTGAAAAAATAA
* * * * * * *
62382188 TTTTGAGAATATGGTTTTAAAAAAATATGGTAAAAAATGCTTCAAGCAGGATGCACTGTCAGC
63 TTTTGAGAAGATGGTTCT-GAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
62382251 AAAAGT
1 AAAAGT
62382257 GTAATAACCC
Statistics
Matches: 1417, Mismatches: 249, Indels: 138
0.79 0.14 0.08
Matches are distributed among these distances:
108 2 0.00
109 17 0.01
110 40 0.03
111 4 0.00
112 4 0.00
113 5 0.00
114 2 0.00
115 4 0.00
116 36 0.03
117 47 0.03
118 20 0.01
119 8 0.01
120 1 0.00
121 4 0.00
122 2 0.00
123 8 0.01
124 137 0.10
125 679 0.48
126 391 0.28
127 5 0.00
128 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (124 bp):
AAAAGTACTGAAAAAAGCTCCCACCTGGACGCTCTTTTTCTTAGTAGTTTCTGAAAAAATAATTT
TGAGAAGATGGTTCTGAAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTGTCAAC
Found at i:62381389 original size:250 final size:249
Alignment explanation
Indices: 62380396--62382256 Score: 2069
Period size: 250 Copynumber: 7.5 Consensus size: 249
62380386 TTCAGTTAAA
* * * * * * *
62380396 AAAAGTACTGAAATAAGCTCCTAGC-TGGACTCTATTTTTCTATACTAGTTTCTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCA-CTTAGACACTCTTTTTCTACAGTAGTTTCTGAAAAAATAAT
* * * * *
62380460 TTTGAGAAGATGGTTCTGACAAAATAGGGTAAAAAACGCTTCAAAC-AGAATGCACTATCAACAA
65 TTTGAGAAGATGGTTCTAAAAAAATATGGTAAAAAACGCTTCAAGCAAG-ATGCACTATCAGCAA
* * * * **
62380524 AAGTTCTGAAAAAAGCTCCCAAC-AGAATGCAATTTTTCTACTGTAGTTT-TGAAAAAATAATTT
129 AAGTACTGAAAAAAGCTCCC-ACTTGGACGCTCTTTTTCTA-TGTAGTTTCTG-AAAAATAATTT
* * * * * * * *
62380587 TGACAAGATGATTCTAAAAAAATAGGGTAAAAAATGCTTCAAGCAGGATACACTGTCAAC
191 TAAAAAGATGGTTCT-GAAAAATAAGGTCAAAAACGCTTCAAACAGGATACACTGTCAAC
* *
62380647 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTACAATAGTTTGTGAAAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTACAGTAGTTTCTGAAAAAATAATT
* * *
62380712 TTGAGAATATGGTTCTAAAAAAATATGGT-AAAAACGCTTCAAGCAAGATGCACTGTTAGCAAAA
66 TTGAGAAGATGGTTCTAAAAAAATATGGTAAAAAACGCTTCAAGCAAGATGCACTATCAGCAAAA
* * * *
62380776 GTACTGAAAAAAGCTCCCACCTGGACGCACTTTTTCT-TCAATAGTTTCTGAAAAATAATTTTGA
131 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTAT--GTAGTTTCTGAAAAATAATTTTAA
* * *
62380840 GAAGATGGTTCTGAAAAGATAAGGTCAAAAAACGCTTCAAACATGATGCACTGTCAAC
194 AAAGATGGTTCTGAAAA-ATAAGGTC-AAAAACGCTTCAAACAGGATACACTGTCAAC
* *
62380898 AAAAGTACTGAAAAAAGCTCCCACCT-GAACACTCTTTTTCTATAGTAGTTTCTG-AAAAATAA-
1 AAAAGTACTGAAAAAAGCTCCCACTTAG-ACACTCTTTTTCTACAGTAGTTTCTGAAAAAATAAT
* * * * *
62380960 TTTGAGAAGATGGTTCT-------GACGGTAAAAAACACTTCAAACAGGATGCACTATCAGCAAA
65 TTTGAGAAGATGGTTCTAAAAAAATATGGTAAAAAACGCTTCAAGCAAGATGCACTATCAGCAAA
* * * *
62381018 AGTACT-AAAAAAGCTCCTAGTTGGACGCTCTTTTACTACTGTAGTTTTTGAAAAAATAATTTTA
130 AGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTA-TGTAGTTTCTG-AAAAATAATTTTA
* * * * *
62381082 AAAAGATGGTTATAGAAAAATAGGGTGAAAAACACTTCACGA-AGGATACACTGTCAAC
193 AAAAGATGGTTCT-GAAAAATAAGGTCAAAAACGCTTCA-AACAGGATACACTGTCAAC
* * * *
62381140 AAAAGTATTGAAAAAAACTCCCACTTAGACACTCTTTTTCTACAGTAGTTTTTGAAAAAATGATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTACAGTAGTTTCTGAAAAAATAATT
* * * *
62381205 TTGAAAAGATGGTTCT-AAAAAATATGGTAAAAAACGCTTTAAGCAAGATGCACTGTTAGCAAAA
66 TTGAGAAGATGGTTCTAAAAAAATATGGTAAAAAACGCTTCAAGCAAGATGCACTATCAGCAAAA
* *
62381269 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAATAGTTTCTGAAAAATAATTTTAAG
131 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTAT-GTAGTTTCTGAAAAATAATTTTAAA
** *
62381334 AAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGTATTGTCAAC
195 AAGATGGTTCTGAAAA-ATAAGGTCAAAAACGCTTCAAACAGGATACACTGTCAAC
* * * *
62381390 AAAAGTACTGAAAAAAGCTCCCACCT-GAACATTCTTTTTCTATAGTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACTTAG-ACACTCTTTTTCTACAGTAGTTTCTGAAAAAATAAT
** * * * *
62381454 TTTGAGAAGATGGTTCCGACAAAATAGGGTAAAAAACGCTTCAACCATGATGCACTATCAGCAAA
65 TTTGAGAAGATGGTTCTAAAAAAATATGGTAAAAAACGCTTCAAGCAAGATGCACTATCAGCAAA
* * * *
62381519 AGTACT-AAAAAAGCTCCCAGTTGGATGCTATTTTTCTACTGTAGTTTTTGAAAAAATAATTTTA
130 AGTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTA-TGTAGTTTCTG-AAAAATAATTTTA
* *
62381583 AAAATATGGTTATAGAAAAATAA-G--------G------A-AGGATACACTGTCAAC
193 AAAAGATGGTTCT-GAAAAATAAGGTCAAAAACGCTTCAAACAGGATACACTGTCAAC
* * *
62381625 AAAAGTACTGAAAAAAACTCCCACTTAGACACTATTTTTCTACAGTAGTTTCTGAACAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTACAGTAGTTTCTGAAAAAATAATT
* * * * *
62381690 TTGAAAAGATGGTT-TTAAAAAATATGGTAAAAAACGCTTCAAGCAAGACGCACTGTTAGCAAAA
66 TTGAGAAGATGGTTCTAAAAAAATATGGTAAAAAACGCTTCAAGCAAGATGCACTATCAGCAAAA
* * *
62381754 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATAATAGTTTCTAAAAAATAATTTTAAG
131 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTAT-GTAGTTTCTGAAAAATAATTTTAAA
* *
62381819 AAGATGGTTCTGAAAAGATAAGGTCAAAAACGCTTCAAACAGGATGCATTGTCAAC
195 AAGATGGTTCTGAAAA-ATAAGGTCAAAAACGCTTCAAACAGGATACACTGTCAAC
* * *
62381875 AAAAGTACTGAAAAAAGCTCCCACCTGGACACTCTTTTTCTATAGTAGTTTCTG-AAAAATAATT
1 AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTACAGTAGTTTCTGAAAAAATAATT
* * * * * *
62381939 TTGAGAAGATGGTTCTGACAAAATAGGGTAAAAAACGCTTCAAACAGGATGCACTATCAGTAAAA
66 TTGAGAAGATGGTTCTAAAAAAATATGGTAAAAAACGCTTCAAGCAAGATGCACTATCAGCAAAA
* * * *
62382004 GTACT-AAAAAAGCTCCTAGTTGGACGCTATTTTTCTATTGTAGTTTTTGAAAATATAATTTTAA
131 GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTA-TGTAGTTTCTGAAAA-ATAATTTTAA
* * * * * **
62382068 AAAGATGGTTATAGAAAAATAGGGTAAAAAACACTTCACGA-AGGATACACTCCCAAC
194 AAAGATGGTTCT-GAAAAATAAGGTCAAAAACGCTTCA-AACAGGATACACTGTCAAC
* *
62382125 AAAAGTACTGAAAAAAGCTCCCA-TGAAGACACTCTTTTTCTACAGTAGTTTTTGAAAAAATAAT
1 AAAAGTACTGAAAAAAGCTCCCACT-TAGACACTCTTTTTCTACAGTAGTTTCTGAAAAAATAAT
* * * * *
62382189 TTTGAGAATATGGTTTTAAAAAAATATGGTAAAAAATGCTTCAAGCAGGATGCACTGTCAGCAAA
65 TTTGAGAAGATGGTTCTAAAAAAATATGGTAAAAAACGCTTCAAGCAAGATGCACTATCAGCAAA
62382254 AGT
130 AGT
62382257 GTAATAACCC
Statistics
Matches: 1362, Mismatches: 188, Indels: 120
0.82 0.11 0.07
Matches are distributed among these distances:
233 5 0.00
234 74 0.05
235 119 0.09
236 2 0.00
242 111 0.08
243 74 0.05
244 22 0.02
248 1 0.00
249 92 0.07
250 513 0.38
251 344 0.25
252 5 0.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (249 bp):
AAAAGTACTGAAAAAAGCTCCCACTTAGACACTCTTTTTCTACAGTAGTTTCTGAAAAAATAATT
TTGAGAAGATGGTTCTAAAAAAATATGGTAAAAAACGCTTCAAGCAAGATGCACTATCAGCAAAA
GTACTGAAAAAAGCTCCCACTTGGACGCTCTTTTTCTATGTAGTTTCTGAAAAATAATTTTAAAA
AGATGGTTCTGAAAAATAAGGTCAAAAACGCTTCAAACAGGATACACTGTCAAC
Found at i:62381664 original size:110 final size:108
Alignment explanation
Indices: 62381506--62381713 Score: 281
Period size: 110 Copynumber: 1.9 Consensus size: 108
62381496 AACCATGATG
* * * * ** * *
62381506 CACTATCAGCAAAAGTACTAAAAAAGCTCCCAGTTGGATGCTATTTTTCTACTGTAGTTTTTGAA
1 CACTATCAACAAAAGTACTAAAAAAACTCCCACTTAGACACTATTTTTCTACAGTAGTTTCTGAA
*
62381571 AAAATAATTTTAAAAATATGGTTATAGAAAAATAAGGAAGGATA
66 AAAATAATTTTAAAAAGATGGTTATA-AAAAATAAGGAAGGATA
*
62381615 CACTGTCAACAAAAGTACTGAAAAAAACTCCCACTTAGACACTATTTTTCTACAGTAGTTTCTGA
1 CACTATCAACAAAAGTACT-AAAAAAACTCCCACTTAGACACTATTTTTCTACAGTAGTTTCTGA
* * *
62381680 ACAAATAATTTTGAAAAGATGGTTTTAAAAAATA
65 AAAAATAATTTTAAAAAGATGGTTATAAAAAATA
62381714 TGGTAAAAAA
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
109 24 0.28
110 61 0.72
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.31
Consensus pattern (108 bp):
CACTATCAACAAAAGTACTAAAAAAACTCCCACTTAGACACTATTTTTCTACAGTAGTTTCTGAA
AAAATAATTTTAAAAAGATGGTTATAAAAAATAAGGAAGGATA
Found at i:62385269 original size:126 final size:125
Alignment explanation
Indices: 62384983--62385281 Score: 386
Period size: 126 Copynumber: 2.4 Consensus size: 125
62384973 GGATGTTACA
* * *
62384983 AAAAGTACTGAAAAAAGGTCCTACCTAGACGCTCTTTTTCTACAATACTTTCTAAAAAATAATTT
1 AAAAGTACTGAAAAAAGCTCCCACCTAGACACTCTTTTTCTACAATACTTTCTAAAAAATAATTT
* *
62385048 TGAAAAGATGGTTCTAAAAAGATAGGGTCAAAAATGCTTCAAACAGGATGCACTGCCAGC
66 TGAAAAGATGGTTCTAAAAAGATAGGGTCAAAAATGCTTCAAACAAGATGCACTACCAGC
* * ** * *
62385108 AAAAGTACT-AAAAAAACTTCCCTCCT-GAACACTCTTTTTCTGTAGTAGTTTCTGAAAAAATAA
1 AAAAGTACTGAAAAAAGC-TCCCACCTAG-ACACTCTTTTTCTACAATACTTTCT-AAAAAATAA
* * * *
62385171 TTTTGAGAAGATGGTTCTGAAAAGATAGGGTCAAAAATGCTTCAAACAAGATGCATTATCAGC
63 TTTTGAAAAGATGGTTCTAAAAAGATAGGGTCAAAAATGCTTCAAACAAGATGCACTACCAGC
*** *
62385234 AAAAGTACTGAAAAAAGCTCCCACCTAGTTTCTCTTTCTCTACAATAC
1 AAAAGTACTGAAAAAAGCTCCCACCTAGACACTCTTTTTCTACAATAC
62385282 ATCATGCTTG
Statistics
Matches: 144, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
124 7 0.05
125 35 0.24
126 94 0.65
127 8 0.06
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (125 bp):
AAAAGTACTGAAAAAAGCTCCCACCTAGACACTCTTTTTCTACAATACTTTCTAAAAAATAATTT
TGAAAAGATGGTTCTAAAAAGATAGGGTCAAAAATGCTTCAAACAAGATGCACTACCAGC
Found at i:62385377 original size:25 final size:25
Alignment explanation
Indices: 62385348--62385395 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
62385338 TTACAGCAAG
*
62385348 AGAAATTAGAGAAGTTCAGAAGAAA
1 AGAAATTAGAAAAGTTCAGAAGAAA
* *
62385373 AGAAATTGGAAAAGTTCATAAGA
1 AGAAATTAGAAAAGTTCAGAAGA
62385396 TTATATATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.54, C:0.04, G:0.23, T:0.19
Consensus pattern (25 bp):
AGAAATTAGAAAAGTTCAGAAGAAA
Found at i:62387515 original size:22 final size:22
Alignment explanation
Indices: 62387487--62387533 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
62387477 TATCCCCATA
*
62387487 TAGAGTGTAG-GGCTGGATGGAG
1 TAGAGTGTAGAGGATGGATGG-G
62387509 TAGAGTGTAGAGGATGGATGGG
1 TAGAGTGTAGAGGATGGATGGG
62387531 TAG
1 TAG
62387534 GACTTCTGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.26, C:0.02, G:0.49, T:0.23
Consensus pattern (22 bp):
TAGAGTGTAGAGGATGGATGGG
Found at i:62395260 original size:22 final size:22
Alignment explanation
Indices: 62395232--62395276 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
62395222 TCCCCACATG
*
62395232 GAGTGTAG-GGTTGGATGGAGTA
1 GAGTGTAGTGGATGGATGG-GTA
62395254 GAGTGTAGTGGATGGATGGGTA
1 GAGTGTAGTGGATGGATGGGTA
62395276 G
1 G
62395277 GACTTTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.22, C:0.00, G:0.51, T:0.27
Consensus pattern (22 bp):
GAGTGTAGTGGATGGATGGGTA
Found at i:62399027 original size:61 final size:60
Alignment explanation
Indices: 62398897--62399026 Score: 172
Period size: 60 Copynumber: 2.1 Consensus size: 60
62398887 TCTATTGTCT
* * * **
62398897 TATTCAAAAGAACTTCTATTTTATTAAATAGGACAAAATATAAAAATAATTTGTAAAAATA
1 TATTAAAAACAACTTCTATTTTATTAAATA-GAAAAAATATAAAAATAATTCATAAAAATA
* *
62398958 TATTAAAAACAACTTCTATTTTATTAAAT-GAAAACAATATAAAAATAGTTCATACAAATA
1 TATTAAAAACAACTTCTATTTTATTAAATAGAAAA-AATATAAAAATAATTCATAAAAATA
62399018 TATTAAAAA
1 TATTAAAAA
62399027 AATCAATACA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
59 4 0.07
60 30 0.49
61 27 0.44
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.34
Consensus pattern (60 bp):
TATTAAAAACAACTTCTATTTTATTAAATAGAAAAAATATAAAAATAATTCATAAAAATA
Found at i:62401000 original size:18 final size:19
Alignment explanation
Indices: 62400977--62401016 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
62400967 AATATTAATT
*
62400977 AAAATTACATAA-ATGAAA
1 AAAATTAAATAATATGAAA
*
62400995 AAAATTAAATAATATTAAA
1 AAAATTAAATAATATGAAA
62401014 AAA
1 AAA
62401017 TTGAAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (19 bp):
AAAATTAAATAATATGAAA
Found at i:62401017 original size:18 final size:18
Alignment explanation
Indices: 62400962--62401023 Score: 54
Period size: 18 Copynumber: 3.2 Consensus size: 18
62400952 AAAAATTATA
62400962 AAATAAATATTAATTAAAATT
1 AAAT-AATATTAA--AAAATT
* *
62400983 ACATAA-ATGAAAAAAATT
1 AAATAATAT-TAAAAAATT
62401001 AAATAATATTAAAAAATT
1 AAATAATATTAAAAAATT
62401019 GAAAT
1 -AAAT
62401024 TAACCCTTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
18 19 0.56
19 8 0.24
20 4 0.12
21 3 0.09
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (18 bp):
AAATAATATTAAAAAATT
Found at i:62401197 original size:21 final size:21
Alignment explanation
Indices: 62401167--62401207 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
62401157 GGAAATTATG
**
62401167 ATTTAAAGAGAGCTTTGAGAA
1 ATTTAAAGAGAAATTTGAGAA
*
62401188 ATTTAGAGAGAAATTTGAGA
1 ATTTAAAGAGAAATTTGAGA
62401208 GCTTTTTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.02, G:0.24, T:0.29
Consensus pattern (21 bp):
ATTTAAAGAGAAATTTGAGAA
Found at i:62401245 original size:11 final size:12
Alignment explanation
Indices: 62401183--62401246 Score: 64
Period size: 12 Copynumber: 5.7 Consensus size: 12
62401173 AGAGAGCTTT
62401183 GAGAAATTTAGA
1 GAGAAATTTAGA
62401195 GAGAAATTT-GA
1 GAGAAATTTAGA
***
62401206 GAGCTTTTTA-A
1 GAGAAATTTAGA
*
62401217 -AAAAATTTAGA
1 GAGAAATTTAGA
62401228 GAGAAATTTAGA
1 GAGAAATTTAGA
62401240 -AGAAATT
1 GAGAAATT
62401247 AAAGGAAATT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
10 5 0.12
11 17 0.41
12 19 0.46
ACGTcount: A:0.48, C:0.02, G:0.20, T:0.30
Consensus pattern (12 bp):
GAGAAATTTAGA
Found at i:62401256 original size:33 final size:33
Alignment explanation
Indices: 62401184--62401256 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 33
62401174 GAGAGCTTTG
***
62401184 AGAAATTTAGAGAGAAATTTGAGAGCTTTTTAA
1 AGAAATTTAGAGAGAAATTTGAGAGCAAATTAA
*
62401217 AAAAATTTAGAGAGAAATTT-AGAAG-AAATTAA
1 AGAAATTTAGAGAGAAATTTGAG-AGCAAATTAA
62401249 AGGAAATT
1 A-GAAATT
62401257 GTGTAAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
32 7 0.21
33 26 0.79
ACGTcount: A:0.51, C:0.01, G:0.19, T:0.29
Consensus pattern (33 bp):
AGAAATTTAGAGAGAAATTTGAGAGCAAATTAA
Found at i:62401508 original size:29 final size:29
Alignment explanation
Indices: 62401454--62401510 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
62401444 CGACTATTAC
*
62401454 CTATATCAATAAATAAAATTTAAAATGAT
1 CTATATCAATAAATAAAATTGAAAATGAT
* * *
62401483 CTATTTCAATAAATAAAGTTGGAAATGA
1 CTATATCAATAAATAAAATTGAAAATGA
62401511 GGTTTTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (29 bp):
CTATATCAATAAATAAAATTGAAAATGAT
Found at i:62408253 original size:69 final size:69
Alignment explanation
Indices: 62408142--62408280 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
62408132 CAAGACTCTA
*
62408142 TCAGCCCTACCACCACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
62408207 CCTG
66 CCTG
*
62408211 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCTTGTTTTGGAA
1 TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
62408276 CCTG
66 CCTG
62408280 T
1 T
62408281 TTTTCCTATC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.27
Consensus pattern (69 bp):
TCAGCCCTACCACAACTACAAAACCTGCTGAAAATCCTACAGCCACTGTTATTCCTGTTTTGGAA
CCTG
Found at i:62409536 original size:12 final size:12
Alignment explanation
Indices: 62409521--62409545 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62409511 AACATTATAA
62409521 TGTTAAAATATT
1 TGTTAAAATATT
62409533 TGTTAAAATATT
1 TGTTAAAATATT
62409545 T
1 T
62409546 TTCATTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGTTAAAATATT
Found at i:62409793 original size:6 final size:6
Alignment explanation
Indices: 62409782--62409842 Score: 50
Period size: 6 Copynumber: 10.2 Consensus size: 6
62409772 CATGCTCACC
* * * * * * *
62409782 ATCATG ATCATG ATCTTG ACCATG ATCATC ACCATC ATCATC ATCATC
1 ATCATG ATCATG ATCATG ATCATG ATCATG ATCATG ATCATG ATCATG
*
62409830 ATCATG AACATG A
1 ATCATG ATCATG A
62409843 GCATAAACAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (6 bp):
ATCATG
Found at i:62420908 original size:79 final size:80
Alignment explanation
Indices: 62420747--62420971 Score: 305
Period size: 79 Copynumber: 2.8 Consensus size: 80
62420737 TTGAATGATG
* * * * *
62420747 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
62420810 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
62420827 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
62420890 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* * * * *
62420906 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
62420971 G
66 G
62420972 AACGAGTAGC
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
79 73 0.56
80 48 0.37
81 9 0.07
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:62420960 original size:119 final size:120
Alignment explanation
Indices: 62420747--62420971 Score: 314
Period size: 119 Copynumber: 1.9 Consensus size: 120
62420737 TTGAATGATG
* *
62420747 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTT
*
62420812 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
62420867 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCAAAGGCAT
*
62420929 TTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTG
64 TTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTG
62420972 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
118 1 0.01
119 72 0.77
120 20 0.22
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTT
GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:62420978 original size:40 final size:40
Alignment explanation
Indices: 62420747--62420971 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
62420737 TTGAATGATG
* * * *
62420747 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
62420787 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
62420827 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
62420867 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62420906 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62420947 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62420972 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 37 0.23
40 116 0.71
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62425699 original size:43 final size:43
Alignment explanation
Indices: 62425606--62425721 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 43
62425596 TATTGAGATT
* * * *
62425606 ACATGTAAGACCATGTCTGGGACATTGGCATCGTTAATCGATT
1 ACATGTAAGACCATGTCTAGGACAATGGCATCGATAATCGATA
* * * *
62425649 TCGTGTAAGACCTTGTCTAGGACAATGGCATCGAT-ATGTGATA
1 ACATGTAAGACCATGTCTAGGACAATGGCATCGATAAT-CGATA
* *
62425692 ACATGTAAGACCATATCTAGGA-TATGGCAT
1 ACATGTAAGACCATGTCTAGGACAATGGCAT
62425722 TGTATGAGTT
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 9 0.15
43 50 0.85
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (43 bp):
ACATGTAAGACCATGTCTAGGACAATGGCATCGATAATCGATA
Found at i:62427099 original size:43 final size:43
Alignment explanation
Indices: 62427006--62427164 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
62426996 GGTTATCGAG
* * * *
62427006 ATGTGATTACATGTAAGATCATGTCTAGGACATTGACATTATA
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGACATCATA
* *
62427049 TTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATTA
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGACATCA-TA
* * * * *
62427093 AT-TGATTATGTGTAAGACCCTGTTTGGGACAGTGACAT-AGA
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGACATCATA
* * * *
62427134 TGTGTGATAACATGTAAGACCATATCTGGGA
1 -ATGTGATTACGTGTAAGACCATGTCTGGGA
62427165 TATAGCATTG
Statistics
Matches: 93, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 87 0.94
44 3 0.03
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGACATCATA
Found at i:62428530 original size:56 final size:56
Alignment explanation
Indices: 62428444--62428563 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
62428434 ACAAGGGATG
62428444 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
62428500 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
62428556 ATGGGCAA
1 ATGGGCAA
62428564 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:62429826 original size:79 final size:81
Alignment explanation
Indices: 62429690--62429872 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
62429680 TCGAATGATG
* *
62429690 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
62429754 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
62429769 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
62429831 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
62429849 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
62429873 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:62429888 original size:40 final size:40
Alignment explanation
Indices: 62429691--62429874 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
62429681 CGAATGATGT
* * * *
62429691 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
62429731 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
62429771 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
62429809 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
62429850 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
62429875 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:62429896 original size:79 final size:79
Alignment explanation
Indices: 62429743--62429907 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
62429733 GGACTAAGAT
* **
62429743 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
62429808 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
62429822 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
62429885 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
62429901 CCGAAGG
1 CCGAAGG
62429908 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:62436413 original size:56 final size:56
Alignment explanation
Indices: 62436327--62436446 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
62436317 ACAAGGGATG
62436327 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
62436383 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
62436439 ATGGGCAA
1 ATGGGCAA
62436447 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:62437914 original size:171 final size:171
Alignment explanation
Indices: 62437629--62437970 Score: 684
Period size: 171 Copynumber: 2.0 Consensus size: 171
62437619 TTGCAAAGTG
62437629 GCCTATTAATGCATATTGTGAAAATGATGGGTTTGCATGTCAATTTACCCAAATTAAGGCATAGT
1 GCCTATTAATGCATATTGTGAAAATGATGGGTTTGCATGTCAATTTACCCAAATTAAGGCATAGT
62437694 GGCCGGCCATGCTATGAGTGGAAACATGTCACAAACATGTTATGTTAGTGATGGATGTTAGGAAC
66 GGCCGGCCATGCTATGAGTGGAAACATGTCACAAACATGTTATGTTAGTGATGGATGTTAGGAAC
62437759 AATAAAATAAGGAGTATGGGATACAAAATATATGCCTTTTA
131 AATAAAATAAGGAGTATGGGATACAAAATATATGCCTTTTA
62437800 GCCTATTAATGCATATTGTGAAAATGATGGGTTTGCATGTCAATTTACCCAAATTAAGGCATAGT
1 GCCTATTAATGCATATTGTGAAAATGATGGGTTTGCATGTCAATTTACCCAAATTAAGGCATAGT
62437865 GGCCGGCCATGCTATGAGTGGAAACATGTCACAAACATGTTATGTTAGTGATGGATGTTAGGAAC
66 GGCCGGCCATGCTATGAGTGGAAACATGTCACAAACATGTTATGTTAGTGATGGATGTTAGGAAC
62437930 AATAAAATAAGGAGTATGGGATACAAAATATATGCCTTTTA
131 AATAAAATAAGGAGTATGGGATACAAAATATATGCCTTTTA
62437971 TATTAATAAA
Statistics
Matches: 171, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
171 171 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.30
Consensus pattern (171 bp):
GCCTATTAATGCATATTGTGAAAATGATGGGTTTGCATGTCAATTTACCCAAATTAAGGCATAGT
GGCCGGCCATGCTATGAGTGGAAACATGTCACAAACATGTTATGTTAGTGATGGATGTTAGGAAC
AATAAAATAAGGAGTATGGGATACAAAATATATGCCTTTTA
Found at i:62439960 original size:47 final size:47
Alignment explanation
Indices: 62439909--62440225 Score: 519
Period size: 47 Copynumber: 6.7 Consensus size: 47
62439899 TTAGGATTCT
* * *
62439909 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
62439956 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62440003 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62440050 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62440097 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
62440144 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
62440191 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62440226 TCCCGAAGGG
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 255 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:62440394 original size:37 final size:37
Alignment explanation
Indices: 62440344--62440459 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
62440334 CCGAGCTCTA
62440344 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
62440381 AAGACCCGATGACTACGTGTGGGGATTTTTTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
** * * *
62440418 AAGACCCGACAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
62440455 AAGAC
1 AAGAC
62440460 TTCGTAATAA
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:62441464 original size:40 final size:39
Alignment explanation
Indices: 62441380--62441564 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
62441370 TCGAATGATG
* * * *
62441380 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
62441420 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62441460 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
62441499 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTA-AA
*
62441540 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
62441565 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 35 0.28
40 77 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62441517 original size:79 final size:81
Alignment explanation
Indices: 62441380--62441562 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
62441370 TCGAATGATG
* *
62441380 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
62441444 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
62441459 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCTCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATC-CGAAGGCA
*
62441521 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
62441539 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
62441563 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 57 0.64
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:62441586 original size:79 final size:78
Alignment explanation
Indices: 62441417--62441597 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 78
62441407 CTAAGTGACC
* *
62441417 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATATCCGG-TTAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCAT
**
62441482 TGGTGCGAGTTACT
65 TGGAACGAGTTACT
* * *
62441496 AAATCCGGGTTAAG-TCTCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGG
1 ATATCC-GGTTAAGATC-CGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGG
*
62441559 CATTTGAACGAG-TAGCT
62 CATTGGAACGAGTTA-CT
62441576 ATATCCGGTTAA-ATTCCGAAGG
1 ATATCCGGTTAAGA-TCCGAAGG
62441598 TACGTGATTT
Statistics
Matches: 86, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
78 4 0.05
79 54 0.63
80 28 0.33
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (78 bp):
ATATCCGGTTAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:62445134 original size:43 final size:43
Alignment explanation
Indices: 62445086--62445228 Score: 157
Period size: 43 Copynumber: 3.3 Consensus size: 43
62445076 TGCTTACATT
* *
62445086 TAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTG
1 TAAGACCATATCTGGGACATTGGCATCGTATTGTGATTACGTG
* * *
62445129 TAAGACCATGTCTGGGACGTTGGCATCGTTAAT-TGATTACGTG
1 TAAGACCATATCTGGGACATTGGCATCG-TATTGTGATTACGTG
* * * *
62445172 TAAGACCCTATCTAGGACAGTGGCATCG-ATGTGTGA-TAGCATG
1 TAAGACCATATCTGGGACATTGGCATCGTAT-TGTGATTA-CGTG
62445215 TAAGACCATATCTG
1 TAAGACCATATCTG
62445229 AGATATGTCA
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 3 0.04
43 77 0.92
44 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
TAAGACCATATCTGGGACATTGGCATCGTATTGTGATTACGTG
Found at i:62447391 original size:13 final size:14
Alignment explanation
Indices: 62447360--62447393 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
62447350 CTAATTTTTG
*
62447360 AAACATAACTTTAA
1 AAACATGACTTTAA
62447374 AAACATGACTTT-A
1 AAACATGACTTTAA
62447387 AAACATG
1 AAACATG
62447394 TATTAAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 8 0.42
14 11 0.58
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (14 bp):
AAACATGACTTTAA
Found at i:62464746 original size:42 final size:42
Alignment explanation
Indices: 62464687--62464770 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
62464677 TCTGGGTACA
* * *
62464687 AGGTTTGACTTCAGTACTGCGTTCCATCCTCAAACGGATGGT
1 AGGTTGGACTTCAGTACTGCGATCCATCCTCAAACAGATGGT
*
62464729 AGGTTGGACTTCAGTACTGCGATCCATCCTCAGACAGATGGT
1 AGGTTGGACTTCAGTACTGCGATCCATCCTCAAACAGATGGT
62464771 CAGTCCGAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.29
Consensus pattern (42 bp):
AGGTTGGACTTCAGTACTGCGATCCATCCTCAAACAGATGGT
Found at i:62467819 original size:33 final size:34
Alignment explanation
Indices: 62467782--62467846 Score: 114
Period size: 33 Copynumber: 1.9 Consensus size: 34
62467772 CCCACACTGT
62467782 TACTGTATAGGGCTAAGGCCCAGACT-TTACTAA
1 TACTGTATAGGGCTAAGGCCCAGACTGTTACTAA
*
62467815 TACTGTATAGGGCTAAGGCCTAGACTGTTACT
1 TACTGTATAGGGCTAAGGCCCAGACTGTTACT
62467847 GCATGCTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 25 0.83
34 5 0.17
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (34 bp):
TACTGTATAGGGCTAAGGCCCAGACTGTTACTAA
Found at i:62474876 original size:46 final size:44
Alignment explanation
Indices: 62474821--62474993 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 44
62474811 TGGTTGAGCA
62474821 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* * * *
62474867 TTCGCACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G
*
62474912 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 --TCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
62474960 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
62474994 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 58 0.55
47 27 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (44 bp):
TCCGACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:62474977 original size:93 final size:93
Alignment explanation
Indices: 62474818--62474988 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
62474808 GGATGGTTGA
* **
62474818 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGCACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGCACTCGTTGAGT
62474883 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
62474911 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCG-AGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGCA-CTCGTTGAG
62474975 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
62474989 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGCACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:62482418 original size:12 final size:12
Alignment explanation
Indices: 62482403--62482427 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
62482393 CCTAAAAAAA
62482403 TATAATTTGAAC
1 TATAATTTGAAC
62482415 TATAATTTGAAC
1 TATAATTTGAAC
62482427 T
1 T
62482428 CACAAAAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TATAATTTGAAC
Found at i:62484104 original size:120 final size:121
Alignment explanation
Indices: 62483880--62484119 Score: 473
Period size: 120 Copynumber: 2.0 Consensus size: 121
62483870 TAGAAAATGT
62483880 TCTCTCTTTCTCAAACTTTCTATCTTCTTTCTCTATTAATCCTTTGAATCTTGAAGAGAATTTCA
1 TCTCTCTTTCTCAAACTTTCTATCTTCTTTCTCTATTAATCCTTTGAATCTTGAAGAGAATTTCA
62483945 ACTTTCTAACAGGTAGGGAAGTGTTGGCAACCTTGACAAAGAAACAATAGAACTCA
66 ACTTTCTAACAGGTAGGGAAGTGTTGGCAACCTTGACAAAGAAACAATAGAACTCA
62484001 TCTCTCTTTCTCAAACTTTCTATCTTCTTTCTCTATTAATCCTTTGAATCTT-AAGAGAATTTCA
1 TCTCTCTTTCTCAAACTTTCTATCTTCTTTCTCTATTAATCCTTTGAATCTTGAAGAGAATTTCA
62484065 ACTTTCTAACAGGTAGGGAAGTGTTGGCAACCTTGACAAAGAAACAATAGAACTC
66 ACTTTCTAACAGGTAGGGAAGTGTTGGCAACCTTGACAAAGAAACAATAGAACTC
62484120 TAGAAGCACA
Statistics
Matches: 119, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
120 67 0.56
121 52 0.44
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (121 bp):
TCTCTCTTTCTCAAACTTTCTATCTTCTTTCTCTATTAATCCTTTGAATCTTGAAGAGAATTTCA
ACTTTCTAACAGGTAGGGAAGTGTTGGCAACCTTGACAAAGAAACAATAGAACTCA
Found at i:62491017 original size:27 final size:27
Alignment explanation
Indices: 62490984--62491188 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
62490974 TAAATTGTAC
62490984 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
62491011 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62491038 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62491064 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62491092 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62491120 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62491147 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62491174 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62491189 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62491152 original size:109 final size:108
Alignment explanation
Indices: 62490985--62491188 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
62490975 AAATTGTACA
* *
62490985 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
62491050 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
62491093 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
62491158 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
62491189 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:62499062 original size:27 final size:27
Alignment explanation
Indices: 62499025--62499229 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
62499015 TAAATTGTAC
62499025 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
62499052 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
62499079 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62499105 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
62499133 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
62499161 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
62499188 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
62499215 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
62499230 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:62499164 original size:109 final size:108
Alignment explanation
Indices: 62499026--62499229 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
62499016 AAATTGTACA
* *
62499026 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
62499091 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
62499134 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
62499199 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
62499230 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:62501997 original size:27 final size:26
Alignment explanation
Indices: 62501960--62502010 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
62501950 GGGGTGTTAC
*
62501960 ATATAAACTATCAATTTATTATATATT
1 ATATAAACTATCAATATA-TATATATT
* *
62501987 ATATGAACTATTAATATATATATA
1 ATATAAACTATCAATATATATATA
62502011 GTAAAATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (26 bp):
ATATAAACTATCAATATATATATATT
Found at i:62503130 original size:11 final size:11
Alignment explanation
Indices: 62503104--62503153 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
62503094 ATGTTTTGAA
62503104 TTTT-TTTT-G
1 TTTTCTTTTAG
*
62503113 TTATTCTTTTAA
1 TT-TTCTTTTAG
62503125 TTTTCTTTTAG
1 TTTTCTTTTAG
*
62503136 TTTT-TTTTGG
1 TTTTCTTTTAG
62503146 TTTTCTTT
1 TTTTCTTT
62503154 GTTTCTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 11 0.32
11 19 0.56
12 2 0.06
ACGTcount: A:0.08, C:0.06, G:0.08, T:0.78
Consensus pattern (11 bp):
TTTTCTTTTAG
Found at i:62503143 original size:21 final size:21
Alignment explanation
Indices: 62503097--62503153 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
62503087 TTTATCTATG
*
62503097 TTTTGAATTTT-TTTTGTTAT
1 TTTTTAATTTTCTTTTGTTAT
62503117 TCTTTTAATTTTCTTTTAGTT-T
1 T-TTTTAATTTTCTTTT-GTTAT
**
62503139 TTTTTGGTTTTCTTT
1 TTTTTAATTTTCTTT
62503154 GTTTCTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 1 0.03
21 21 0.68
22 6 0.19
23 3 0.10
ACGTcount: A:0.11, C:0.05, G:0.09, T:0.75
Consensus pattern (21 bp):
TTTTTAATTTTCTTTTGTTAT
Found at i:62503481 original size:18 final size:18
Alignment explanation
Indices: 62503459--62503518 Score: 59
Period size: 18 Copynumber: 3.3 Consensus size: 18
62503449 TTCCCCCCCC
*
62503459 AAAAAAAAAGAAAAAATTG
1 AAAAACAAAGAAAAAA-TG
* *
62503478 AAAAACCAAGAAAAGATG
1 AAAAACAAAGAAAAAATG
*
62503496 AAAAAGAGAA-AAAAAATG
1 AAAAACA-AAGAAAAAATG
62503514 AAAAA
1 AAAAA
62503519 GAATTCAAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
18 19 0.56
19 15 0.44
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.07
Consensus pattern (18 bp):
AAAAACAAAGAAAAAATG
Found at i:62505568 original size:18 final size:18
Alignment explanation
Indices: 62505530--62505569 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
62505520 ATTGGAAATG
*
62505530 TAAATAATTAATGGATGA
1 TAAATAATTAATGGATAA
62505548 TAAATAATTAATAGGA-AA
1 TAAATAATTAAT-GGATAA
62505566 TAAA
1 TAAA
62505570 ATCATTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.57, C:0.00, G:0.12, T:0.30
Consensus pattern (18 bp):
TAAATAATTAATGGATAA
Found at i:62510245 original size:16 final size:16
Alignment explanation
Indices: 62510224--62510332 Score: 76
Period size: 16 Copynumber: 6.7 Consensus size: 16
62510214 TGCATATTTT
62510224 CATAGCTCACACATTA
1 CATAGCTCACACATTA
**
62510240 CATAGCTTGCACATTA
1 CATAGCTCACACATTA
* * * *
62510256 CACAACTCGCACATCA
1 CATAGCTCACACATTA
**
62510272 TTGTAGCTCACACATTA
1 -CATAGCTCACACATTA
* * *
62510289 TAGAGCTCACACATCA
1 CATAGCTCACACATTA
*
62510305 C-TATGACTCACAAATTA
1 CATA-G-CTCACACATTA
62510322 CATAGCTCACA
1 CATAGCTCACA
62510333 TATCATTACA
Statistics
Matches: 70, Mismatches: 19, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
15 1 0.01
16 46 0.66
17 21 0.30
18 2 0.03
ACGTcount: A:0.36, C:0.30, G:0.09, T:0.25
Consensus pattern (16 bp):
CATAGCTCACACATTA
Found at i:62510302 original size:33 final size:31
Alignment explanation
Indices: 62510265--62510339 Score: 78
Period size: 33 Copynumber: 2.3 Consensus size: 31
62510255 ACACAACTCG
* *
62510265 CACATCATTGTAGCTCACACATTATAGAGCTCA
1 CACATCATTG-A-CTCACAAATTACAGAGCTCA
*
62510298 CACATCACTATGACTCACAAATTACATAGCTCA
1 CACATCA-T-TGACTCACAAATTACAGAGCTCA
*
62510331 CATATCATT
1 CACATCATT
62510340 ACAACTCGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
31 1 0.03
32 1 0.03
33 30 0.83
34 2 0.06
35 2 0.06
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (31 bp):
CACATCATTGACTCACAAATTACAGAGCTCA
Found at i:62511131 original size:27 final size:27
Alignment explanation
Indices: 62511093--62511148 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
62511083 AGAGAAAGGT
62511093 TAGTATGAAGGATTTTTCTTTTTTCAA
1 TAGTATGAAGGATTTTTCTTTTTTCAA
62511120 TAGTATGAAGGATTTTTCTTTTTTCAA
1 TAGTATGAAGGATTTTTCTTTTTTCAA
62511147 TA
1 TA
62511149 CTACTCTCTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.27, C:0.07, G:0.14, T:0.52
Consensus pattern (27 bp):
TAGTATGAAGGATTTTTCTTTTTTCAA
Found at i:62512168 original size:24 final size:24
Alignment explanation
Indices: 62512112--62512173 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
62512102 TCTATGACAT
* *
62512112 CTTTATGGTGTGTTCTGTAAACGC
1 CTTTATGGTGTATTCTGTAAACAC
* *
62512136 ATTTATGGTGTATTCTGTAAATAC
1 CTTTATGGTGTATTCTGTAAACAC
*
62512160 CTTTGTGGTGTATT
1 CTTTATGGTGTATT
62512174 TTGTGTTTCC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.19, C:0.11, G:0.23, T:0.47
Consensus pattern (24 bp):
CTTTATGGTGTATTCTGTAAACAC
Found at i:62519894 original size:33 final size:33
Alignment explanation
Indices: 62519852--62519918 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
62519842 CATGGACTAA
62519852 ATAGCATTTTAAACATACATAACATCAAATATG
1 ATAGCATTTTAAACATACATAACATCAAATATG
62519885 ATAGCATTTTAAACATACATAACATCAAATATG
1 ATAGCATTTTAAACATACATAACATCAAATATG
62519918 A
1 A
62519919 CTTAGATTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.49, C:0.15, G:0.06, T:0.30
Consensus pattern (33 bp):
ATAGCATTTTAAACATACATAACATCAAATATG
Found at i:62523864 original size:26 final size:26
Alignment explanation
Indices: 62523833--62523884 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
62523823 GAAATGAATG
* *
62523833 ATTGAATGGTTGAATTTTTATTGTAT
1 ATTGAACGGTTGAATTTGTATTGTAT
62523859 ATTGAACGGTTGAATTTGTATTGTAT
1 ATTGAACGGTTGAATTTGTATTGTAT
62523885 TAGATCAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.02, G:0.21, T:0.50
Consensus pattern (26 bp):
ATTGAACGGTTGAATTTGTATTGTAT
Found at i:62525869 original size:40 final size:40
Alignment explanation
Indices: 62525631--62525855 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
62525621 TTGAATGATG
* * * *
62525631 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
62525671 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
62525711 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62525750 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62525790 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
62525831 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62525856 AACGAGGAGC
Statistics
Matches: 168, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 37 0.22
40 121 0.72
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62525877 original size:119 final size:119
Alignment explanation
Indices: 62525631--62525888 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
62525621 TTGAATGATG
* *
62525631 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
62525696 GTGCGAGATACTAATTCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGTCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
62525750 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
62525813 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAGT-CCGAAGGCATTTGAACGAGTGA-CTAAA
* *
62525870 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
62525889 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGTCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:62547340 original size:119 final size:121
Alignment explanation
Indices: 62547126--62547389 Score: 344
Period size: 119 Copynumber: 2.2 Consensus size: 121
62547116 TCGAATGATG
* *
62547126 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCATT
* * *
62547190 TGTGCGAGTTACTAATTCTGGTCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-AA
66 GGTGCGAGTTACTAATCCAGGTCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
* * * *
62547245 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATA-TCCGGACTAAGACCCGAAGGCAT
*
62547307 TGGTGCGAGTTACTAAATCCAGGT-TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
65 TGGTGCGAGTTACT-AATCCAGGTCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAA
* *
62547365 -CCGGGCTATGTTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62547390 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
118 28 0.22
119 91 0.72
120 8 0.06
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTATATCCGGACTAAGACCCGAAGGCATT
GGTGCGAGTTACTAATCCAGGTCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
Found at i:62547396 original size:40 final size:40
Alignment explanation
Indices: 62547126--62547389 Score: 313
Period size: 40 Copynumber: 6.7 Consensus size: 40
62547116 TCGAATGATG
* * * *
62547126 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
62547166 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
62547206 TCTGGTCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
62547245 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
62547285 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
62547324 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
62547365 -CCGGGCTATGTTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
62547390 AACGAGTAGC
Statistics
Matches: 191, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
39 67 0.35
40 114 0.60
41 10 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:62547412 original size:79 final size:79
Alignment explanation
Indices: 62547179--62547387 Score: 330
Period size: 79 Copynumber: 2.6 Consensus size: 79
62547169 GGACTAAGAT
* *
62547179 CCGAAGGCATTTGTGCGAGTTACTAATTCTGGTCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
*
62547244 ATCCGGGTTAAGTC
66 ATCCAGGTTAAGTC
*
62547258 CCGAAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
62547323 ATCCAGGTTAAGTC
66 ATCCAGGTTAAGTC
* * *
62547337 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTTCCGAAGGCATT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
62547388 TGAACGAGTA
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
78 2 0.02
79 107 0.89
80 11 0.09
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
ATCCAGGTTAAGTC
Found at i:62554138 original size:13 final size:13
Alignment explanation
Indices: 62554116--62554148 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
62554106 CCAAATAAGA
62554116 TCACACGGCCAAG
1 TCACACGGCCAAG
*
62554129 TCACATGGCCAAG
1 TCACACGGCCAAG
62554142 TCACACG
1 TCACACG
62554149 TCCATGTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.30, C:0.36, G:0.21, T:0.12
Consensus pattern (13 bp):
TCACACGGCCAAG
Found at i:62556122 original size:48 final size:48
Alignment explanation
Indices: 62556051--62556191 Score: 138
Period size: 57 Copynumber: 2.8 Consensus size: 48
62556041 GTTATGAGTA
* *
62556051 ATCCCATGTAAGACAATATCTGGGACATGGCATTGGCATCGATATGTG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
* *
62556099 ATCCCATGTAAGACCATGTCTGGGACATTCCAGACATGGCATTGGCATCGATTTTTG
1 ATCCCATGTAAGACCATGTCT-GG--------GACATGGCATTGGCATCGATATGTG
* * *
62556156 ATCCCATGGAAGACCATGTCTGGGATATTGCATTGG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
62556192 GATATATATG
Statistics
Matches: 77, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
48 30 0.39
49 2 0.03
56 2 0.03
57 43 0.56
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (48 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTG
Found at i:62560097 original size:14 final size:14
Alignment explanation
Indices: 62560078--62560141 Score: 56
Period size: 14 Copynumber: 4.4 Consensus size: 14
62560068 TAAAGATAAC
*
62560078 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
62560092 AAGAAATCCAAGATA
1 AAGAAATCCGA-ATA
* *
62560107 GAGAAACCCAGAATA
1 AAGAAATCC-GAATA
* *
62560122 AATAAATCAGAATA
1 AAGAAATCCGAATA
62560136 AAGAAA
1 AAGAAA
62560142 CCCAAGATAC
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
14 19 0.50
15 18 0.47
16 1 0.03
ACGTcount: A:0.62, C:0.12, G:0.14, T:0.11
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:62560140 original size:29 final size:30
Alignment explanation
Indices: 62560078--62560145 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
62560068 TAAAGATAAC
*
62560078 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCAGAATAAAGAAATCCAAGATA
* *
62560107 GAGAAACCCAGAATAAATAAAT-C-AGAATA
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATA
62560136 AAGAAACCCA
1 AAGAAACCCA
62560146 AGATACGATA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 2 0.06
29 20 0.61
30 11 0.33
ACGTcount: A:0.60, C:0.16, G:0.13, T:0.10
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATA
Found at i:62566617 original size:5 final size:5
Alignment explanation
Indices: 62566607--62566648 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
62566597 TCATGATACC
62566607 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
62566649 TTTAATTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:62572759 original size:93 final size:91
Alignment explanation
Indices: 62572595--62572763 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 91
62572585 GCCCCTAAGT
*
62572595 GAACTCGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
1 GAACTCGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
62572660 AGTTCGGATGCCTAGTTACATTTCAC
66 AGTTCGGATGCCTAGTTACATTTCAC
*
62572686 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTC-GACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62572751 CGAGTTCGGATGC
64 CGAGTTCGGATGC
62572764 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
91 6 0.08
92 20 0.27
93 48 0.65
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTTCAC
Found at i:62572779 original size:46 final size:46
Alignment explanation
Indices: 62572589--62572772 Score: 150
Period size: 46 Copynumber: 4.0 Consensus size: 46
62572579 TAACCCGCCC
* * * * *
62572589 CTAAGTGAACTC-GACTCAACTCAACGAGCTCGGCGTTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
62572634 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCAT
* * * * * *
62572681 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA-
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCAT
62572727 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
62572772 C
1 C
62572773 CTAGTGACAT
Statistics
Matches: 112, Mismatches: 13, Indels: 27
0.74 0.09 0.18
Matches are distributed among these distances:
43 1 0.01
44 22 0.20
45 22 0.20
46 30 0.27
47 30 0.27
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
Found at i:62573214 original size:30 final size:30
Alignment explanation
Indices: 62573180--62573239 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
62573170 ATTTAATACG
62573180 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
62573210 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
62573240 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:62578528 original size:37 final size:37
Alignment explanation
Indices: 62578467--62578545 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
62578457 CTTATTCGAA
* *
62578467 GTCTTACCCAGACATAACCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAACCTCCACACGAAGTCATCGG
* *
62578504 GTCTTACCCGGACAAAATCC-CCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAA-CCTCCACACGAAGTCATCGG
62578541 GTCTT
1 GTCTT
62578546 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCAGACAAAACCTCCACACGAAGTCATCGG
Found at i:62578978 original size:49 final size:49
Alignment explanation
Indices: 62578668--62579194 Score: 830
Period size: 49 Copynumber: 11.0 Consensus size: 49
62578658 TCGGGACTTC
* * * * * * *
62578668 TCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTG
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
62578715 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
62578762 TCAC--ATATATACACTTTCACATTCATCACATC-GCCATTAGGCC-TA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
62578807 TCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
62578854 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
62578901 TCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
62578948 TCACATATATATACGCTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
62578997 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
62579046 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
62579095 TCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
62579146 TCACATATATATACACTTTCACATTCATCACATCGGCCAATAGGCCTTA
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
62579195 CTATCATTTC
Statistics
Matches: 456, Mismatches: 16, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
45 33 0.07
46 23 0.05
47 165 0.36
49 186 0.41
51 49 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:62582286 original size:40 final size:39
Alignment explanation
Indices: 62582155--62582305 Score: 182
Period size: 39 Copynumber: 3.9 Consensus size: 39
62582145 CGAATACACG
* *
62582155 TCACCAGCATGATTGCTCTTCGG-ACCTAGCCCGGATATA
1 TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATA-A
* **
62582194 ACACCAGCATGAATGCTCTTCGGAACTTAGTTCGGAT-A
1 TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATAA
* *
62582232 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATA-A
* *
62582272 TCACTAGCATGAATGCTCTT-GGGACTTAGCCCGG
1 TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGG
62582306 TTTAGTAACT
Statistics
Matches: 97, Mismatches: 12, Indels: 6
0.84 0.10 0.05
Matches are distributed among these distances:
38 33 0.34
39 34 0.35
40 30 0.31
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
TCACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATAA
Found at i:62582331 original size:78 final size:77
Alignment explanation
Indices: 62582168--62582344 Score: 207
Period size: 78 Copynumber: 2.3 Consensus size: 77
62582158 CCAGCATGAT
* * **
62582168 TGCTCTTCGGACCTAGCCCGGATATAACACCAGCATGAATGCTCTTCGGAACTTAGTTCGGATAT
1 TGCTCTTCGGACTTAGCCCGGATACAACACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATAT
* *
62582233 CACTAGCACGAA
66 AACTAGCACCAA
* * * *
62582245 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTT-GGGACTTAGCCCGGTTT
1 TGCTCTTCGG-ACTTAGCCCGGATACAACACCAGCATGAATGCTCTTCGGAACTTAGCCCGG-AT
*
62582309 AGTAACTCGCACCAA
64 A-TAACTAGCACCAA
62582324 TGC-CTTCGG-CTTAGCCCGGAT
1 TGCTCTTCGGACTTAGCCCGGAT
62582345 TAGTAACTCG
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
76 12 0.14
77 21 0.24
78 40 0.47
79 13 0.15
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (77 bp):
TGCTCTTCGGACTTAGCCCGGATACAACACCAGCATGAATGCTCTTCGGAACTTAGCCCGGATAT
AACTAGCACCAA
Found at i:62582348 original size:37 final size:37
Alignment explanation
Indices: 62582293--62582421 Score: 136
Period size: 37 Copynumber: 3.4 Consensus size: 37
62582283 AATGCTCTTG
* *
62582293 GGACTTAGCCCGGTTTAGTAACTCGCACCAATGCCTTC
1 GGACTTAGCCCGGATTAGTAACTCGCACAAATG-CTTC
62582331 GG-CTTAGCCCGGATTAGTAACTCGCACAAATGCTTC
1 GGACTTAGCCCGGATTAGTAACTCGCACAAATGCTTC
* * * *
62582367 GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTC
1 GGA-CTTAGCCCGGAT-TAGTAAC-TCGCACAAATG-CTTC
62582407 GGGACTTAGCCCGGA
1 -GGACTTAGCCCGGA
62582422 CATCATTCAA
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
36 6 0.08
37 28 0.36
38 13 0.17
39 6 0.08
40 22 0.28
41 3 0.04
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (37 bp):
GGACTTAGCCCGGATTAGTAACTCGCACAAATGCTTC
Found at i:62582764 original size:29 final size:29
Alignment explanation
Indices: 62582725--62582803 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
62582715 CTTAATAATC
*
62582725 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
62582755 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
62582784 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
62582804 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:62582846 original size:43 final size:43
Alignment explanation
Indices: 62582785--62582887 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
62582775 TGCATTTCAA
62582785 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
62582828 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
62582871 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
62582888 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:62584799 original size:37 final size:37
Alignment explanation
Indices: 62584749--62584827 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
62584739 TTATTACGAA
* * *
62584749 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
62584786 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
62584823 GTCTT
1 GTCTT
62584828 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:62585257 original size:49 final size:49
Alignment explanation
Indices: 62584946--62585471 Score: 879
Period size: 49 Copynumber: 11.1 Consensus size: 49
62584936 CCCTTCGGGA
* * * * *
62584946 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
62584993 C-TGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585039 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585086 C-TATCAC---TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585131 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585178 C-TATCAC---TATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585223 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585272 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585321 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585370 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585419 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
62585468 CTTA
1 CTTA
62585472 CTATCATTTC
Statistics
Matches: 463, Mismatches: 7, Indels: 16
0.95 0.01 0.03
Matches are distributed among these distances:
45 79 0.17
46 61 0.13
47 85 0.18
49 238 0.51
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:62589815 original size:46 final size:46
Alignment explanation
Indices: 62589748--62589918 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 46
62589738 AGACTCAATA
* *
62589748 AAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCAT
*
62589794 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGGCTAGTT-ACAT--TT
1 AAGTGAACTCGGACTCAACTCAACGAGTTC-G--GGC--GTTCACATCCAT
* * * * * * *
62589842 CA-CGAACTCGGACTCAGCTCAACGAGTTCAGACATTCTCATCCAT
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCAT
62589887 AAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 AAGTGAACTCGGACTCAACTCAACGAGTTCGG
62589919 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 15, Indels: 18
0.75 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 55 0.54
47 26 0.26
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (46 bp):
AAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCAT
Found at i:62589911 original size:93 final size:93
Alignment explanation
Indices: 62589752--62589921 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
62589742 TCAATAAAGT
* * *
62589752 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62589817 CGAGTTCGGATGGCTAGTTACATTTCAC
66 CGAGTTCGGATGGCTAGTTACATTTCAC
* * *
62589845 GAACTCGGACTCAGCTCAACGAGTTCAGACATTCTCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
62589910 CGAGTTCGGATG
66 CGAGTTCGGATG
62589922 CTCAACCATC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGGCTAGTTACATTTCAC
Found at i:62590376 original size:30 final size:30
Alignment explanation
Indices: 62590342--62590401 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
62590332 ATTTAATATG
62590342 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
62590372 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
62590402 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:62600492 original size:27 final size:27
Alignment explanation
Indices: 62600432--62600486 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
62600422 CATACATCTC
**
62600432 ATAAGGGCATAATAGTCATTTTACCTT
1 ATAAGGGCATAATAGTCATTTTAAATT
62600459 ATAAGGGCATAATAGTCATTTATAAATT
1 ATAAGGGCATAATAGTCATTT-TAAATT
62600487 TTAGGGTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (27 bp):
ATAAGGGCATAATAGTCATTTTAAATT
Found at i:62603844 original size:28 final size:28
Alignment explanation
Indices: 62603788--62603888 Score: 177
Period size: 28 Copynumber: 3.6 Consensus size: 28
62603778 CATACAGATA
*
62603788 GTGGCAGAGCCACCAG-AACAGATATTT
1 GTGGCATAGCCACCAGAAACAGATATTT
62603815 GTGGCATAGCCACCAGAAACAGATATTT
1 GTGGCATAGCCACCAGAAACAGATATTT
62603843 GTGGCATAGCCACCAGAAACAGATATTT
1 GTGGCATAGCCACCAGAAACAGATATTT
*
62603871 GTGGCATAGCCACTAGAA
1 GTGGCATAGCCACCAGAA
62603889 CGCTTCCTCC
Statistics
Matches: 71, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 15 0.21
28 56 0.79
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.20
Consensus pattern (28 bp):
GTGGCATAGCCACCAGAAACAGATATTT
Found at i:62611603 original size:27 final size:26
Alignment explanation
Indices: 62611534--62611648 Score: 122
Period size: 27 Copynumber: 4.3 Consensus size: 26
62611524 AGTATGGCTG
* * *
62611534 CCAGAACAGATATTGTGACACAGTCA
1 CCAGAACAGATATTGTGGCATAGCCA
* *
62611560 CCAGATACAAATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCATAGCCA
*
62611587 CAAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCATAGCCA
* *
62611614 TCAGAAACAGATATTTGTAGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCATAGCCA
62611642 CCAGAAC
1 CCAGAAC
62611649 TCTTCCTCCA
Statistics
Matches: 75, Mismatches: 11, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
26 11 0.15
27 39 0.52
28 25 0.33
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCATAGCCA
Found at i:62616045 original size:40 final size:40
Alignment explanation
Indices: 62616001--62616078 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
62615991 CGACTATGCT
*
62616001 TGGCACTAAATGTGCG-GTTTATAATAGCTTCGGCTATAAA
1 TGGCACTAAATGTGCGAG-TTAGAATAGCTTCGGCTATAAA
* *
62616041 TGGCACTAAGTGTGCGAGTTGGAATAGCTTCGGCTATA
1 TGGCACTAAATGTGCGAGTTAGAATAGCTTCGGCTATA
62616079 TAAGAACTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (40 bp):
TGGCACTAAATGTGCGAGTTAGAATAGCTTCGGCTATAAA
Found at i:62622151 original size:40 final size:41
Alignment explanation
Indices: 62622092--62622283 Score: 239
Period size: 40 Copynumber: 4.8 Consensus size: 41
62622082 CATTTGAATG
* * * *
62622092 ATATCCAGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
62622132 TTATCCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
62622172 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-C
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
62622212 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
62622252 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
62622284 TTGTGGTTAT
Statistics
Matches: 137, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
40 134 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:62646701 original size:49 final size:49
Alignment explanation
Indices: 62646648--62646806 Score: 135
Period size: 49 Copynumber: 3.2 Consensus size: 49
62646638 GTAAGTTAAA
62646648 TTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACTCTATTTTATT
1 TTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACTCTATTTTATT
* * * * * * * ** **
62646697 TTCTATGTTTTATAGTGAAC---CAAGAGATTATATGACTAAATGGTAAGTTAAA
1 TTCTATG--TTATA-CGAACTTACTA-AGCTTAAATG-CTTACT-CTATTTTATT
*
62646749 TTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACTCTGTTTTATT
1 TTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACTCTATTTTATT
62646798 TTCTATGTT
1 TTCTATGTT
62646807 TTATAGTGAA
Statistics
Matches: 78, Mismatches: 23, Indels: 18
0.66 0.19 0.15
Matches are distributed among these distances:
49 26 0.33
50 17 0.22
51 17 0.22
52 18 0.23
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (49 bp):
TTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACTCTATTTTATT
Found at i:62646797 original size:101 final size:101
Alignment explanation
Indices: 62646622--62646823 Score: 395
Period size: 101 Copynumber: 2.0 Consensus size: 101
62646612 TTACTTACCT
62646622 ATTATATGACTAAATGGTAAGTTAAATTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACT
1 ATTATATGACTAAATGGTAAGTTAAATTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACT
62646687 CTATTTTATTTTCTATGTTTTATAGTGAACCAAGAG
66 CTATTTTATTTTCTATGTTTTATAGTGAACCAAGAG
62646723 ATTATATGACTAAATGGTAAGTTAAATTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACT
1 ATTATATGACTAAATGGTAAGTTAAATTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACT
*
62646788 CTGTTTTATTTTCTATGTTTTATAGTGAACCAAGAG
66 CTATTTTATTTTCTATGTTTTATAGTGAACCAAGAG
62646824 CTTGTTCGGG
Statistics
Matches: 100, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 100 1.00
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (101 bp):
ATTATATGACTAAATGGTAAGTTAAATTCTATGTTATACGAACTTACTAAGCTTAAATGCTTACT
CTATTTTATTTTCTATGTTTTATAGTGAACCAAGAG
Found at i:62649714 original size:53 final size:53
Alignment explanation
Indices: 62649634--62649738 Score: 185
Period size: 53 Copynumber: 2.0 Consensus size: 53
62649624 AACCTGACCC
*
62649634 AATTCATTGAGTCTGGACCTCGAGTGTTACTAAACGATAAAAACATTTTAAAA
1 AATTCATTGAGTCTGGACCTCGAGTGTTACTAAACAATAAAAACATTTTAAAA
62649687 AATTCATTGAGTCTGGACCTC-AGGTGTTACTAAACAATAAAAACATTTTAAA
1 AATTCATTGAGTCTGGACCTCGA-GTGTTACTAAACAATAAAAACATTTTAAA
62649739 TTTTTTTTAC
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
52 1 0.02
53 49 0.98
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.30
Consensus pattern (53 bp):
AATTCATTGAGTCTGGACCTCGAGTGTTACTAAACAATAAAAACATTTTAAAA
Found at i:62654630 original size:45 final size:43
Alignment explanation
Indices: 62654519--62654636 Score: 134
Period size: 45 Copynumber: 2.7 Consensus size: 43
62654509 AAACCTGAAT
* * *
62654519 TCAT-TCACTAGCATT-TCGCCTGCTAGGCTCGAAGCCCGATA
1 TCATCTCACTGGCATTATAGCCTGCTAGGCTCGAAGCCCAATA
* * *
62654560 TCATTTCACCGGCATTATAGCCTGCTAGGCTCGAAATCCCAAATA
1 TCATCTCACTGGCATTATAGCCTGCTAGGCTCG-AAGCCC-AATA
62654605 GT-ATCTCACTGGCATTATAGCCTGCTAGGCTC
1 -TCATCTCACTGGCATTATAGCCTGCTAGGCTC
62654637 AAAGGCCCGA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
41 4 0.06
42 9 0.14
43 15 0.23
44 5 0.08
45 31 0.48
46 1 0.02
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (43 bp):
TCATCTCACTGGCATTATAGCCTGCTAGGCTCGAAGCCCAATA
Found at i:62655506 original size:47 final size:47
Alignment explanation
Indices: 62655454--62655549 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
62655444 AAAATTTTTT
*
62655454 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAATAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
*
62655501 TTAACTAAGTAACTTATTCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
62655548 TT
1 TT
62655550 TAAATTCAAC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.31
Consensus pattern (47 bp):
TTAACTAAGTAACTTATCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:62657782 original size:40 final size:41
Alignment explanation
Indices: 62657713--62657934 Score: 305
Period size: 40 Copynumber: 5.6 Consensus size: 41
62657703 AACCCAAGTA
* *
62657713 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* * *
62657752 CCTTCGGGTCTTAGCCTGGATATAG-CAACTCA-CACAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACT-AGCACAAATG
*
62657792 CCTTCGGGTCTTAGCCCGGATATAGTCAA-TAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
*
62657832 CCTTCGGGACTTGGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
**
62657872 CCTTCGGGACTTAGCCTAGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
62657912 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
62657935 CATTCGAATA
Statistics
Matches: 164, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
39 14 0.09
40 147 0.90
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:62661870 original size:120 final size:121
Alignment explanation
Indices: 62661629--62661893 Score: 341
Period size: 119 Copynumber: 2.2 Consensus size: 121
62661619 GCTCCTCGTT
* *
62661629 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
62661693 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
66 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTAGCA
**
62661749 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
* * *
62661811 CGGA-TTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCA-CTTAGCA
64 CGGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGT-ATC-TAGCA
62661869 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62661894 CATCATTCAA
Statistics
Matches: 130, Mismatches: 8, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
118 5 0.04
119 62 0.48
120 62 0.48
121 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTAGCA
Found at i:62661893 original size:40 final size:40
Alignment explanation
Indices: 62661629--62661893 Score: 330
Period size: 40 Copynumber: 6.7 Consensus size: 40
62661619 GCTCCTCGTT
* *
62661629 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATCTCGCA
* * *
62661669 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTATCTCGCA
62661709 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTATCTCGCA
62661749 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTATCTCGCA
*
62661789 CAAATGCCTTC-GGATCTTAGTCCGGAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTATCTCGCA
* * *
62661828 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ATC-TCGCA
62661869 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
62661894 CATCATTCAA
Statistics
Matches: 205, Mismatches: 12, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
39 43 0.21
40 150 0.73
41 12 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATCTCGCA
Found at i:62669649 original size:40 final size:38
Alignment explanation
Indices: 62669605--62669782 Score: 211
Period size: 40 Copynumber: 4.6 Consensus size: 38
62669595 GCTCCTCGTT
*
62669605 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGT-ACTCGCA
*
62669645 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTCGCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGT-AC-TCG--CA
*
62669688 CAAATGCCTTCGGGACTTAG-CCGGAATTAGTACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTACTCGCA
*
62669726 CAAATGCCTTC-GGACTTAGCCCGGATTAGT-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTACTCGCA
62669762 CAAATGCCTTC-GGATCTTAGC
1 CAAATGCCTTCGGGA-CTTAGC
62669783 AAGTATCAGC
Statistics
Matches: 128, Mismatches: 4, Indels: 15
0.87 0.03 0.10
Matches are distributed among these distances:
36 20 0.16
37 20 0.16
38 17 0.13
40 33 0.26
41 7 0.05
42 10 0.08
43 21 0.16
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTACTCGCA
Found at i:62687557 original size:43 final size:43
Alignment explanation
Indices: 62687496--62687607 Score: 127
Period size: 43 Copynumber: 2.6 Consensus size: 43
62687486 AAATTCCATA
* * *
62687496 TCCCAAATATGGTCTTACATGTTATCAC-ATATCGATGCCACTG
1 TCCCAAACATGGTCTTACATGTAATCACAATA-CGATGCCAATG
* * * *
62687539 TCCCAAACAGGGTCTTACACGCAATCATAATACGATGCCAATG
1 TCCCAAACATGGTCTTACATGTAATCACAATACGATGCCAATG
* *
62687582 TCCCAGACATTGTCTTACATGTAATC
1 TCCCAAACATGGTCTTACATGTAATC
62687608 GTAACTCGAT
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 53 0.95
44 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACATGTAATCACAATACGATGCCAATG
Found at i:62689838 original size:27 final size:27
Alignment explanation
Indices: 62689790--62689853 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
62689780 AGAGAGAGCA
62689790 TGCCACAAAGACGATCCGTTCAGAATT
1 TGCCACAAAGACGATCCGTTCAGAATT
* * *
62689817 TGGCACAAAGAC-ATTCCTTTCAGAGTT
1 TGCCACAAAGACGA-TCCGTTCAGAATT
62689844 TGCCACAAAG
1 TGCCACAAAG
62689854 GTTATTCTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (27 bp):
TGCCACAAAGACGATCCGTTCAGAATT
Found at i:62689869 original size:28 final size:28
Alignment explanation
Indices: 62689820--62689890 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
62689810 CAGAATTTGG
* * **
62689820 CACAAAGAC-ATTCCTTTCAGAGTTTGC
1 CACAAAGGCTATTCTTTTCAGAGTTCAC
*
62689847 CACAAAGGTTATTCTTTTCAGAGTTCAC
1 CACAAAGGCTATTCTTTTCAGAGTTCAC
62689875 CACAAAGGCTATTCTT
1 CACAAAGGCTATTCTT
62689891 AGTTGTGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 7 0.19
28 30 0.81
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (28 bp):
CACAAAGGCTATTCTTTTCAGAGTTCAC
Found at i:62693878 original size:43 final size:42
Alignment explanation
Indices: 62693721--62693879 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
62693711 TATTTGTTAT
* ** * * *
62693721 CGTGTAAAACCACATCTGGGACGTTAGCATCGATTTGTGATTTA
1 CGTGTAAGACCATGTCTGGGACGTTGGCATC-ATATATGA-TTA
* *
62693765 CGTGTAAGACCATGTCTGGGACATTGGCATCATATATGATTT
1 CGTGTAAGACCATGTCTGGGACGTTGGCATCATATATGATTA
* *
62693807 CGTGTAAGACCCTGTCTGGGAAAG-TGGCATGGC-TATATGATTA
1 CGTGTAAGACCATGTCTGGG-ACGTTGGCAT--CATATATGATTA
* *
62693850 CATGTAAGACCATGCCTGGGACGTTGGCAT
1 CGTGTAAGACCATGTCTGGGACGTTGGCAT
62693880 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 29 0.31
43 39 0.41
44 27 0.28
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACGTTGGCATCATATATGATTA
Found at i:62695649 original size:46 final size:42
Alignment explanation
Indices: 62695482--62695652 Score: 189
Period size: 46 Copynumber: 3.7 Consensus size: 42
62695472 TGCGTGAGCT
*
62695482 AGTGTAAGACATGTCTGGGACATGCATCGGCGACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC-ACA--A-GAGAGTC
*
62695528 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCAAGACGAGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-CAAGA-GAGT-C
*
62695575 TAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGTGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGGC-ACAAGA-GAGTC
62695620 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
62695653 GCAGATATGC
Statistics
Matches: 111, Mismatches: 5, Indels: 18
0.83 0.04 0.13
Matches are distributed among these distances:
44 9 0.08
45 17 0.15
46 36 0.32
47 31 0.28
48 18 0.16
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (42 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCACAAGAGAGTC
Found at i:62695679 original size:94 final size:93
Alignment explanation
Indices: 62695477--62695650 Score: 271
Period size: 94 Copynumber: 1.9 Consensus size: 93
62695467 TCACTTGCGT
62695477 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCGACATTATGAGAGCCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCGACA-TATGAGAGCCAGTGTAAGACCATG
*
62695542 TCTGGGACATGGCATCGACATCAAGACGA
65 TCTGGGACATGGCATCGACAGCAAGACGA
* * * *
62695571 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACA-A-GATGTGTCAGTGTAAGACCATG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCGACATATGA-GAGCCAGTGTAAGACCATG
62695634 TCTGGGACATGGCATCG
65 TCTGGGACATGGCATCG
62695651 GCGCAGATAT
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
91 2 0.03
92 35 0.47
94 38 0.51
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (93 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCGACATATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGACAGCAAGACGA
Found at i:62716717 original size:29 final size:29
Alignment explanation
Indices: 62716675--62716777 Score: 129
Period size: 29 Copynumber: 3.6 Consensus size: 29
62716665 GTGAAAGTGA
*
62716675 TTGGGCCTAGTGGGCCATATAAATGTAAT
1 TTGGGCCTAGTGGGCCATATGAATGTAAT
* * *
62716704 TTGGGCCTAATGGGCCAAATGAATGTTAT
1 TTGGGCCTAGTGGGCCATATGAATGTAAT
* *
62716733 TTGGGCCTATTAGGCCATATGAATG-AGA-
1 TTGGGCCTAGTGGGCCATATGAATGTA-AT
62716761 TTGGGCCTAGTGGGCCA
1 TTGGGCCTAGTGGGCCA
62716778 AATGCATTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
28 15 0.24
29 48 0.76
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (29 bp):
TTGGGCCTAGTGGGCCATATGAATGTAAT
Found at i:62721273 original size:29 final size:28
Alignment explanation
Indices: 62721214--62721297 Score: 98
Period size: 29 Copynumber: 3.0 Consensus size: 28
62721204 TGTGAAAGTT
*
62721214 ATTTGGCCTAGTGGGCCATTTAAATGTG
1 ATTTGGCCTAGTGGGCCATATAAATGTG
* *
62721242 ATTTTGGCCTAATGGGCCATATGAAT-TAG
1 A-TTTGGCCTAGTGGGCCATATAAATGT-G
* *
62721271 ATTGGGCCTAGTGGGCCATATACATGT
1 ATTTGGCCTAGTGGGCCATATAAATGT
62721298 ATGTAAACTT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
28 22 0.48
29 24 0.52
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.33
Consensus pattern (28 bp):
ATTTGGCCTAGTGGGCCATATAAATGTG
Found at i:62721287 original size:28 final size:29
Alignment explanation
Indices: 62721214--62721297 Score: 93
Period size: 28 Copynumber: 3.0 Consensus size: 29
62721204 TGTGAAAGTT
*
62721214 ATTT-GGCCTAGTGGGCCATTTAAATGTG
1 ATTTGGGCCTAGTGGGCCATATAAATGTG
* * *
62721242 ATTTTGGCCTAATGGGCCATATGAAT-TAG
1 ATTTGGGCCTAGTGGGCCATATAAATGT-G
*
62721271 A-TTGGGCCTAGTGGGCCATATACATGT
1 ATTTGGGCCTAGTGGGCCATATAAATGT
62721298 ATGTAAACTT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
28 25 0.54
29 21 0.46
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.33
Consensus pattern (29 bp):
ATTTGGGCCTAGTGGGCCATATAAATGTG
Found at i:62725921 original size:40 final size:40
Alignment explanation
Indices: 62725847--62725988 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
62725837 AACCCAAGTA
* *
62725847 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
62725886 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
62725926 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
62725966 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
62725989 CATTCGAATA
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 12 0.12
40 81 0.84
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:62730135 original size:28 final size:28
Alignment explanation
Indices: 62730093--62730196 Score: 136
Period size: 28 Copynumber: 3.7 Consensus size: 28
62730083 TGGCCCTTTT
* *
62730093 AGGCCCAATCTCATTCATATGGCCCACC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
62730121 GGGCCCAATCACATTCTTATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
62730149 AGGCCCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
62730177 AGGCCCGATCACACTCATAT
1 AGGCCCAATCACATTCATAT
62730197 TCATGCAATC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.24, C:0.37, G:0.16, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:62741028 original size:39 final size:41
Alignment explanation
Indices: 62740968--62741188 Score: 296
Period size: 40 Copynumber: 5.6 Consensus size: 41
62740958 AACCCAAGTA
* *
62740968 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* * *
62741007 CTTTCGGGTCTTAGCCC-GATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* **
62741046 CCTTCGGGTCTTCA-CCTAGATATAGTCAA-TAGCACAAATG
1 CCTTCGGGACTT-AGCCCGGATATAGTCAACTAGCACAAATG
*
62741086 CCTTCGGGACTTGGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
62741126 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
62741166 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
62741189 CATTCGAATA
Statistics
Matches: 165, Mismatches: 11, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
39 47 0.28
40 115 0.70
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:62749161 original size:39 final size:38
Alignment explanation
Indices: 62749044--62749258 Score: 265
Period size: 39 Copynumber: 5.6 Consensus size: 38
62749034 AACCCAAGTA
* * *
62749044 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTACCCGGATATAGCAA-TAGCACAAATG
* *
62749083 CCTTC-GGTCTTAGCC-GATATAGCAACT-GCACAAATG
1 CCTTCGGGACTTACCCGGATATAGCAA-TAGCACAAATG
* *
62749119 CCTTCGGGTCTTACCCGGATATAGTTAATAGCACAAATG
1 CCTTCGGGACTTACCCGGATATAG-CAATAGCACAAATG
* *
62749158 CCTTCGGGACTTGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTACCCGGATATAG-CAATAGCACAAATG
*
62749197 CCTTCGGGACTTAGCCCGGATATAGCACTAGCACAAATG
1 CCTTCGGGACTTA-CCCGGATATAGCAATAGCACAAATG
62749236 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTA-CCCGGATAT
62749259 CATTCGAATA
Statistics
Matches: 162, Mismatches: 9, Indels: 10
0.90 0.05 0.06
Matches are distributed among these distances:
36 14 0.09
37 21 0.13
38 16 0.10
39 100 0.62
40 11 0.07
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (38 bp):
CCTTCGGGACTTACCCGGATATAGCAATAGCACAAATG
Found at i:62755821 original size:13 final size:13
Alignment explanation
Indices: 62755803--62755834 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
62755793 TTCAAACTAC
62755803 TTTTTATTTTTAA
1 TTTTTATTTTTAA
*
62755816 TTTTTATTTTTAT
1 TTTTTATTTTTAA
62755829 TTTTTA
1 TTTTTA
62755835 GCAGATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTATTTTTAA
Found at i:62755825 original size:5 final size:6
Alignment explanation
Indices: 62755803--62755832 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
62755793 TTCAAACTAC
62755803 TTTTTA TTTTTAA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTT-A TTTTTA TTTTTA TTTTT
62755833 TAGCAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:62758343 original size:93 final size:93
Alignment explanation
Indices: 62758232--62758402 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
62758222 GCCCCTAAGT
* *
62758232 GAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCACATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCACATCCATAAGTGAACTCAGACTCAACTCA
62758296 ACGAGTTCAGATGCCTAGTTACATTTCAC
65 ACGAGTTCAGATGCCTAGTTACATTTCAC
* *
62758325 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
62758390 CGAGTTCGGATGC
66 CGAGTTCAGATGC
62758403 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATTTCAC
Found at i:62758399 original size:46 final size:47
Alignment explanation
Indices: 62758227--62758396 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 47
62758217 AACCCGCCCC
* * *
62758227 TAAGTGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGACATTCACATCCA
* * *
62758273 TAAGTGAACTCAGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAG--GAC-A-TTCACATCCA
* *
62758321 TCA-CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGACATTCACATCCA
62758366 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
62758397 GGATGCTCAA
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 2 0.02
46 57 0.55
47 25 0.24
48 3 0.03
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGACATTCACATCCA
Found at i:62765840 original size:47 final size:47
Alignment explanation
Indices: 62765771--62765936 Score: 207
Period size: 47 Copynumber: 3.6 Consensus size: 47
62765761 GCCCCTAAGT
62765771 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * *
62765818 GAACTCGGACTCAACTTAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
*
62765864 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
62765911 GAACTCGGACTCAACTCAACGAGTTC
1 GAACTCGGACTCAACTCAACGAGTTC
62765937 AGACATTCGC
Statistics
Matches: 98, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 27 0.28
47 53 0.54
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:62765878 original size:93 final size:93
Alignment explanation
Indices: 62765766--62765988 Score: 419
Period size: 93 Copynumber: 2.4 Consensus size: 93
62765756 AACCCGCCCC
62765766 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
* *
62765831 ACTTAACGAGTTCGGACATTCGCATCCA
66 ACTCAACGAGTTCAGACATTCGCATCCA
*
62765859 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
62765924 ACTCAACGAGTTCAGACATTCGCATCCA
66 ACTCAACGAGTTCAGACATTCGCATCCA
62765952 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
62765989 TCAACCATCC
Statistics
Matches: 126, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
93 126 1.00
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (93 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCACGAACTCGGACTCA
ACTCAACGAGTTCAGACATTCGCATCCA
Found at i:62765885 original size:46 final size:46
Alignment explanation
Indices: 62765818--62765985 Score: 200
Period size: 46 Copynumber: 3.6 Consensus size: 46
62765808 TACATTTCAC
*
62765818 GAACTCGGACTCAACTTAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
* * * * *
62765864 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCATAAGT
*
62765911 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
62765957 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
62765986 TGCTCAACCA
Statistics
Matches: 100, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 55 0.55
47 27 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
Found at i:62766004 original size:46 final size:43
Alignment explanation
Indices: 62765768--62765996 Score: 160
Period size: 47 Copynumber: 5.0 Consensus size: 43
62765758 CCCGCCCCTA
62765768 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * * *
62765815 CA-CGAACTCGGACTCAACTTAACGAGTTCGGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATT
*
62765861 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * * *
62765908 CA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGC-CAACCATT
62765954 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
62765997 CCTAGTGACA
Statistics
Matches: 143, Mismatches: 22, Indels: 36
0.71 0.11 0.18
Matches are distributed among these distances:
43 1 0.01
44 13 0.09
45 3 0.02
46 56 0.39
47 57 0.40
48 3 0.02
49 8 0.06
50 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.24
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:62766440 original size:30 final size:30
Alignment explanation
Indices: 62766417--62766493 Score: 140
Period size: 29 Copynumber: 2.6 Consensus size: 30
62766407 ACTTTGCAAA
62766417 AATTACACTTTTGCCCCTAAACTTTTGCAT
1 AATTACACTTTTGCCCCTAAACTTTTGCAT
62766447 AATTACACTTTT-CCCCTAAACTTTTGCAT
1 AATTACACTTTTGCCCCTAAACTTTTGCAT
62766476 AATTACAC-TTTGCCCCTA
1 AATTACACTTTTGCCCCTA
62766494 GGCTCAGGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
28 3 0.07
29 31 0.67
30 12 0.26
ACGTcount: A:0.27, C:0.29, G:0.05, T:0.39
Consensus pattern (30 bp):
AATTACACTTTTGCCCCTAAACTTTTGCAT
Found at i:62769153 original size:45 final size:45
Alignment explanation
Indices: 62769089--62769492 Score: 781
Period size: 45 Copynumber: 9.0 Consensus size: 45
62769079 TTCGGCCATG
62769089 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
*
62769134 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
62769179 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
*
62769224 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
62769269 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
62769314 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
*
62769359 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
62769404 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
62769449 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCA
62769493 CCTCTTCTTT
Statistics
Matches: 353, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 353 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (45 bp):
ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
Found at i:62769623 original size:16 final size:16
Alignment explanation
Indices: 62769602--62769633 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
62769592 CATTCTGCAT
62769602 TTAAACAACAGCAGCA
1 TTAAACAACAGCAGCA
*
62769618 TTAAACAACAGTAGCA
1 TTAAACAACAGCAGCA
62769634 AAACACATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.22, G:0.12, T:0.16
Consensus pattern (16 bp):
TTAAACAACAGCAGCA
Found at i:62773120 original size:45 final size:45
Alignment explanation
Indices: 62773056--62773414 Score: 691
Period size: 45 Copynumber: 8.0 Consensus size: 45
62773046 TTCGGCCATG
62773056 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
62773101 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
*
62773146 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
62773191 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
62773236 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
*
62773281 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGCCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
62773326 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
*
62773371 ATGCTTCCTCAAATTCTTCCATGAATTATGCACGATGTTGGTCA
1 ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCA
62773415 CCTCTTCTTT
Statistics
Matches: 309, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 309 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (45 bp):
ATGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAA
Done.