Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 188 of 345
Found at i:63544973 original size:6 final size:6
Alignment explanation
Indices: 63544962--63545003 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
63544952 GCATTCACAC
* *
63544962 TCTGAT TCTGAT TCTGAT TCTCAT TTTGAT TCT-AGT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGA-T TCTGAT
63545004 AATGTTTCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
5 1 0.03
6 28 0.93
7 1 0.03
ACGTcount: A:0.17, C:0.17, G:0.14, T:0.52
Consensus pattern (6 bp):
TCTGAT
Found at i:63546335 original size:22 final size:23
Alignment explanation
Indices: 63546265--63546387 Score: 97
Period size: 23 Copynumber: 5.2 Consensus size: 23
63546255 CTCGTATGAT
* *
63546265 CTTACTGTTTTCAGCTCATTGGAG
1 CTTACTG-TTTCAGCTCAATAGAG
* * * *
63546289 TTTACTATTTCAACTC-TTATGAG
1 CTTACTGTTTCAGCTCAATA-GAG
*
63546312 CTTACTGTTT-AGCTCGATAGAG
1 CTTACTGTTTCAGCTCAATAGAG
*
63546334 CTTACCGTTTCAGCTCAATAGAG
1 CTTACTGTTTCAGCTCAATAGAG
* *
63546357 CTTACTATTCATCAGCTCAAGAGGAG
1 CTTACTGTT--TCAGCTCAATA-GAG
63546383 CTTAC
1 CTTAC
63546388 CGATCATGGC
Statistics
Matches: 80, Mismatches: 13, Indels: 10
0.78 0.13 0.10
Matches are distributed among these distances:
22 18 0.22
23 39 0.49
24 5 0.06
25 10 0.12
26 8 0.10
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (23 bp):
CTTACTGTTTCAGCTCAATAGAG
Found at i:63546394 original size:26 final size:25
Alignment explanation
Indices: 63546330--63546394 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
63546320 TTAGCTCGAT
* *
63546330 AGAGCTTACCG-T-TTCAGCTCAAT
1 AGAGCTTACCGATCATCAGCTCAAG
*
63546353 AGAGCTTA-CTATTCATCAGCTCAAG
1 AGAGCTTACCGA-TCATCAGCTCAAG
63546378 AGGAGCTTACCGATCAT
1 A-GAGCTTACCGATCAT
63546395 GGCTCGAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
22 1 0.03
23 8 0.24
24 1 0.03
25 10 0.30
26 11 0.33
27 2 0.06
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (25 bp):
AGAGCTTACCGATCATCAGCTCAAG
Found at i:63552658 original size:80 final size:78
Alignment explanation
Indices: 63552574--63552745 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 78
63552564 GGACTAAGAT
*
63552574 CCGAAGGCATTTGTGCGAG-A-TACAAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATAC
1 CCGAAGGCATTTGTGCGAGCATTA-AA--TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATAC
* *
63552637 TAAATCCGGGTTAAGTC
62 TAAAACCGGGCTAAGTC
* * * *
63552654 CCGAAGGCATTCGTGCGAGTCATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAG-CATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
63552719 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
63552733 CCGAAGGCATTTG
1 CCGAAGGCATTTG
63552746 AACGAGGAGC
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
79 38 0.47
80 37 0.46
82 3 0.04
83 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGCATTAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
ACCGGGCTAAGTC
Found at i:63552736 original size:39 final size:39
Alignment explanation
Indices: 63552521--63552743 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
63552511 CTGAATGCTG
* * * * * *
63552521 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAA
** * *
63552561 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
63552601 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAAA
* *
63552641 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
63552681 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* * *
63552720 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
63552744 TGAACGAGGA
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
39 37 0.24
40 105 0.69
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:63552763 original size:79 final size:80
Alignment explanation
Indices: 63552601--63552778 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
63552591 AGATACAAGT
* * * *
63552601 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** *
63552666 GTGCGAGTCATTAAA
66 GAACGAGTCACTAAA
* * * *
63552681 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* *
63552745 GAACGAG-GAGCTATA
66 GAACGAGTCA-CTAAA
*
63552760 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
63552779 TACGTGATTT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 16 0.19
79 48 0.58
80 19 0.23
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTCACTAAA
Found at i:63560594 original size:46 final size:46
Alignment explanation
Indices: 63560527--63560701 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
63560517 AACCCGCCCC
* *
63560527 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTCCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCCACATCCA
** *
63560573 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG-CCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCC-ACATCCA
* * ** * *
63560619 TCTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCCACATCCA
63560666 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATG
63560702 CTCAACCATC
Statistics
Matches: 106, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
45 4 0.04
46 67 0.63
47 32 0.30
48 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGTCCACATCCA
Found at i:63560639 original size:93 final size:93
Alignment explanation
Indices: 63560532--63560702 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
63560522 GCCCCTAAGT
***
63560532 GAACTCGGACTCAACTCAACGAGCTCGGGTGTCCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATCCACATCCATAAGTGAACTCGGACTCAACTCAA
63560597 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
63560625 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATCCACATCCATAAGTGAACTCGGACTCAACTCAA
63560690 CGAGTTCGGATGC
66 CGAGTTCGGATGC
63560703 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATCCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:63564469 original size:26 final size:26
Alignment explanation
Indices: 63564440--63564499 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
63564430 TCCCTTTGAA
* * *
63564440 TCATTCGATATTTTGCACACTAAATG
1 TCATTCAATATCTCGCACACTAAATG
*
63564466 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAATG
63564494 TCATTC
1 TCATTC
63564500 TCAATAGTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAATG
Found at i:63568232 original size:28 final size:28
Alignment explanation
Indices: 63568192--63568270 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
63568182 GCAATCAAAT
* * *
63568192 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
63568220 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
** *
63568248 ATATCACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
63568271 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:63571476 original size:116 final size:116
Alignment explanation
Indices: 63571272--63571501 Score: 397
Period size: 116 Copynumber: 2.0 Consensus size: 116
63571262 AACCTGAAGG
* * *
63571272 TACTTGATGTTCAGCTTTAATTTGCTGACATACCATACATTTCGATACAAATTTAGAAATATCTC
1 TACTTGATGTTCAGCTTTAATTTGCTGACATACCAGACATTTCAATACAAATTCAGAAATATCTC
63571337 TTTTCATGCCGTTACACTAGTACATTTTCTTCAAATCGTTGTACATATTAT
66 TTTTCATGCCGTTACACTAGTACATTTTCTTCAAATCGTTGTACATATTAT
*
63571388 TACTTGATGTTCAGCTTTAATTTGCTGACATACCAGGCATTTCAATACAAATTCAGAAATATCTC
1 TACTTGATGTTCAGCTTTAATTTGCTGACATACCAGACATTTCAATACAAATTCAGAAATATCTC
* * *
63571453 TTTTCATGCTGTTTCACTAGTACATTTTCTTCAAATTGTTGTACATATT
66 TTTTCATGCCGTTACACTAGTACATTTTCTTCAAATCGTTGTACATATT
63571502 GGTACTTCCC
Statistics
Matches: 107, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 107 1.00
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.42
Consensus pattern (116 bp):
TACTTGATGTTCAGCTTTAATTTGCTGACATACCAGACATTTCAATACAAATTCAGAAATATCTC
TTTTCATGCCGTTACACTAGTACATTTTCTTCAAATCGTTGTACATATTAT
Found at i:63578542 original size:21 final size:21
Alignment explanation
Indices: 63578518--63578559 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
63578508 GTCTAAGTTG
63578518 GACTACTTCAGGAGGTCTTTC
1 GACTACTTCAGGAGGTCTTTC
*
63578539 GACTACTTTAGGAGGTCTTTC
1 GACTACTTCAGGAGGTCTTTC
63578560 ACATTGCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (21 bp):
GACTACTTCAGGAGGTCTTTC
Found at i:63579130 original size:22 final size:23
Alignment explanation
Indices: 63579100--63579182 Score: 75
Period size: 22 Copynumber: 3.7 Consensus size: 23
63579090 AATGTTCTAG
* *
63579100 TTTCAAATTTTTTTCT-GAATTT
1 TTTCGAATTTTTTTCTCAAATTT
63579122 TTTCGAATTTTTTT-TCAAATTT
1 TTTCGAATTTTTTTCTCAAATTT
*
63579144 TTT-GAACTTTTTT-TCAAACTTTT
1 TTTCGAATTTTTTTCTCAAA--TTT
*
63579167 TTTTGAACTTTTTTTC
1 TTTCGAA-TTTTTTTC
63579183 GAAAGTTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
21 15 0.29
22 21 0.41
23 6 0.12
24 3 0.06
25 6 0.12
ACGTcount: A:0.20, C:0.11, G:0.05, T:0.64
Consensus pattern (23 bp):
TTTCGAATTTTTTTCTCAAATTT
Found at i:63579157 original size:11 final size:11
Alignment explanation
Indices: 63579108--63579181 Score: 62
Period size: 11 Copynumber: 6.6 Consensus size: 11
63579098 AGTTTCAAAT
63579108 TTTTTTCTGAA-
1 TTTTTT-TGAAC
* *
63579119 TTTTTTCGAAT
1 TTTTTTTGAAC
*
63579130 TTTTTTTCAA-
1 TTTTTTTGAAC
*
63579140 ATTTTTTGAAC
1 TTTTTTTGAAC
*
63579151 TTTTTTTCAAAC
1 TTTTTTT-GAAC
63579163 TTTTTTTTGAAC
1 -TTTTTTTGAAC
63579175 TTTTTTT
1 TTTTTTT
63579182 CGAAAGTTTT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
10 11 0.22
11 27 0.53
12 6 0.12
13 7 0.14
ACGTcount: A:0.19, C:0.09, G:0.05, T:0.66
Consensus pattern (11 bp):
TTTTTTTGAAC
Found at i:63579191 original size:12 final size:12
Alignment explanation
Indices: 63579100--63579194 Score: 78
Period size: 12 Copynumber: 8.2 Consensus size: 12
63579090 AATGTTCTAG
63579100 TTTC-AAATTTT
1 TTTCGAAATTTT
63579111 TTTCTG-AA-TTT
1 TTTC-GAAATTTT
*
63579122 TTTCGAATTTTT
1 TTTCGAAATTTT
63579134 TTTC-AAA-TTT
1 TTTCGAAATTTT
*
63579144 TTT-GAACTTTT
1 TTTCGAAATTTT
63579155 TTTC-AAACTTTT
1 TTTCGAAA-TTTT
* *
63579167 TTTTGAACTTTT
1 TTTCGAAATTTT
63579179 TTTCGAAAGTTTT
1 TTTCGAAA-TTTT
63579192 TTT
1 TTT
63579195 TCACTTACTT
Statistics
Matches: 66, Mismatches: 8, Indels: 18
0.72 0.09 0.20
Matches are distributed among these distances:
10 9 0.14
11 22 0.33
12 26 0.39
13 9 0.14
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.63
Consensus pattern (12 bp):
TTTCGAAATTTT
Found at i:63579200 original size:24 final size:24
Alignment explanation
Indices: 63579119--63579195 Score: 97
Period size: 21 Copynumber: 3.3 Consensus size: 24
63579109 TTTTTCTGAA
* *
63579119 TTTTTTCGAATTTTTTTTCAAA--
1 TTTTTTTGAACTTTTTTTCAAACT
63579141 -TTTTTTGAACTTTTTTTCAAACT
1 TTTTTTTGAACTTTTTTTCAAACT
*
63579164 TTTTTTTGAACTTTTTTTCGAAAGT
1 TTTTTTTGAACTTTTTTTC-AAACT
63579189 TTTTTTT
1 TTTTTTT
63579196 CACTTACTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
21 19 0.40
24 18 0.38
25 11 0.23
ACGTcount: A:0.19, C:0.09, G:0.06, T:0.65
Consensus pattern (24 bp):
TTTTTTTGAACTTTTTTTCAAACT
Found at i:63584939 original size:42 final size:42
Alignment explanation
Indices: 63584873--63585023 Score: 132
Period size: 42 Copynumber: 3.6 Consensus size: 42
63584863 TGAGTTTACG
* * * * *
63584873 TGTAAGACCATATCCGAGATATGGCATCATAATGAGATTTTG
1 TGTAAGACCATATCTGGGACATGGCATCATAATGAGATATTA
* * *
63584915 TGTAAGACCATGTCTGGGACATGGCATCGGT-ATGAGA-ATAA
1 TGTAAGACCATATCTGGGACATGGCATC-ATAATGAGATATTA
* **
63584956 TGTAAGACCATAGT-TGGG-CTTGGCATCA-ATATGAGATCCTA
1 TGTAAGACCATA-TCTGGGACATGGCATCATA-ATGAGATATTA
*
63584997 TGTAAGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGACATGGCAT
63585024 TAGTATGATT
Statistics
Matches: 86, Mismatches: 16, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
40 15 0.17
41 33 0.38
42 37 0.43
43 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATGGCATCATAATGAGATATTA
Found at i:63584989 original size:40 final size:42
Alignment explanation
Indices: 63584915--63585023 Score: 120
Period size: 41 Copynumber: 2.7 Consensus size: 42
63584905 TGAGATTTTG
**
63584915 TGTAAGACCAT-GTCTGGGACATGGCATCGGTATGAGAAT-AA
1 TGTAAGACCATAGTCTGGGACATGGCATCAATATGAG-ATCAA
* *
63584956 TGTAAGACCATAGT-TGGG-CTTGGCATCAATATGAGATCCTA
1 TGTAAGACCATAGTCTGGGACATGGCATCAATATGAGAT-CAA
*
63584997 TGTAAGACCATA-TCTGGGATATGGCAT
1 TGTAAGACCATAGTCTGGGACATGGCAT
63585024 TAGTATGATT
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
39 2 0.04
40 15 0.26
41 32 0.56
42 8 0.14
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATAGTCTGGGACATGGCATCAATATGAGATCAA
Found at i:63594288 original size:40 final size:40
Alignment explanation
Indices: 63594036--63594281 Score: 397
Period size: 40 Copynumber: 6.2 Consensus size: 40
63594026 AACCCAAGTA
* * *
63594036 CCTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
63594075 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63594115 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63594155 CCTTCGGGACTTAGCTCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
63594195 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63594235 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
63594275 CCTTCGG
1 CCTTCGG
63594282 ATCTTAGTCC
Statistics
Matches: 192, Mismatches: 13, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
39 13 0.07
40 179 0.93
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:63602366 original size:39 final size:39
Alignment explanation
Indices: 63602180--63602432 Score: 368
Period size: 39 Copynumber: 6.5 Consensus size: 39
63602170 AACCCAAGTA
* * *
63602180 CCTTCGGGATTTAG-CC-GATATAGCAACTCGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
63602218 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAGATG
1 CCTTC-GGACTTAGCCCGGATATAGTAACTAGCACAAATG
* *
63602258 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTC-GGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
63602298 CCTTCGGACTTAG-CCGGATATAGTCACTAGCACAAATG
1 CCTTCGGACTTAGCCCGGATATAGTAACTAGCACAAATG
63602336 CCTTCGGACTTAGCCCGGATATAGTAACTAGCACAAATG
1 CCTTCGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
63602375 CCTTCGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGACTTAGCCCGGATATAGTAACTAGCACAAATG
*
63602414 CCTTCGGATCTTAGTCCGG
1 CCTTCGGA-CTTAGCCCGG
63602433 TTATCTTCCG
Statistics
Matches: 200, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 50 0.25
39 80 0.40
40 70 0.35
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:63608696 original size:6 final size:6
Alignment explanation
Indices: 63608687--63608767 Score: 67
Period size: 6 Copynumber: 13.0 Consensus size: 6
63608677 AATTAGGTGA
* *
63608687 CAGAAT CAGAAT CAGAAT CAGTAT CAGGTAA- CAGAAT CAAAAT CAGAAT
1 CAGAAT CAGAAT CAGAAT CAGAAT CA-G-AAT CAGAAT CAGAAT CAGAAT
* *
63608736 CAGTAT CAGGTAA- CAGAAT CAAAAAT CAGAAT
1 CAGAAT CA-G-AAT CAGAAT C-AGAAT CAGAAT
63608768 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
5 4 0.07
6 43 0.72
7 11 0.18
8 2 0.03
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
CAGAAT
Found at i:63608696 original size:31 final size:31
Alignment explanation
Indices: 63608660--63608767 Score: 146
Period size: 31 Copynumber: 3.5 Consensus size: 31
63608650 AAGAAACATT
* * *
63608660 ATCAGAA-CTAGAATCAGAATTAGGTGACAGA
1 ATCAGAATC-AGAATCAGTATCAGGTAACAGA
63608691 ATCAGAATCAGAATCAGTATCAGGTAACAGA
1 ATCAGAATCAGAATCAGTATCAGGTAACAGA
*
63608722 ATCAAAATCAGAATCAGTATCAGGTAACAGA
1 ATCAGAATCAGAATCAGTATCAGGTAACAGA
*
63608753 ATCAAAAATCAGAAT
1 ATC-AGAATCAGAAT
63608768 GTGAATGCAA
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
31 59 0.83
32 12 0.17
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
ATCAGAATCAGAATCAGTATCAGGTAACAGA
Found at i:63608723 original size:19 final size:19
Alignment explanation
Indices: 63608699--63608756 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
63608689 GAATCAGAAT
63608699 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
63608718 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
63608730 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
63608749 CAGAATCA
1 CAGAATCA
63608757 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:63609231 original size:27 final size:27
Alignment explanation
Indices: 63609175--63609367 Score: 221
Period size: 27 Copynumber: 7.2 Consensus size: 27
63609165 GGGGAAAATG
* * * * *
63609175 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
63609201 GTAATTCCATCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
*
63609228 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
63609255 GTAATTCTACCCTACAGGGGTA-TTCC
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
63609281 GATAATTTTACCATATAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
*
63609309 -TAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
63609335 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
63609362 GTAATT
1 GTAATT
63609368 TTACAAATCG
Statistics
Matches: 140, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
26 38 0.27
27 99 0.71
28 3 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:63609340 original size:53 final size:54
Alignment explanation
Indices: 63609174--63609359 Score: 223
Period size: 53 Copynumber: 3.5 Consensus size: 54
63609164 AGGGGAAAAT
* * * * * * * *
63609174 GGTAATTTTACCCCACA-AGGTATCTCGGTAATTCCATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * *
63609227 AGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
* * * *
63609281 GATAATTTTACCATATAGGGGTATTTC-ATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
63609334 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
63609360 TAGTAATTTT
Statistics
Matches: 112, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
53 60 0.54
54 52 0.46
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (54 bp):
GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTC
Found at i:63609367 original size:80 final size:81
Alignment explanation
Indices: 63609216--63609371 Score: 262
Period size: 80 Copynumber: 1.9 Consensus size: 81
63609206 TCCATCCTAC
* *
63609216 AGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCC
1 AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCA
63609281 GATAATTTTACCATAT
66 GATAATTTTACCATAT
*
63609297 AGGGGTATTTCA-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTT
1 AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTA-TTC
63609361 AG-TAATTTTAC
65 AGATAATTTTAC
63609372 AAATCGAGGA
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
80 57 0.80
81 14 0.20
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (81 bp):
AGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCA
GATAATTTTACCATAT
Found at i:63609385 original size:27 final size:27
Alignment explanation
Indices: 63609352--63609609 Score: 267
Period size: 27 Copynumber: 9.6 Consensus size: 27
63609342 TACCCTACAG
*
63609352 GGGTATTTTAGTAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* ** * *
63609379 GGATATTTGGGTAATTTTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* *
63609406 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
*
63609433 GGGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
**
63609460 GGGTATTTCAGTAATTTTGTAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
63609487 GGGTATTTC-GATAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTTACAAATCGA
*
63609514 GGGTATTTCAGTAATTTTAC-AATTGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * * *
63609540 CGGTATTTCGGTAATTTTATAAACCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
63609567 GGGTACTTT-GGTAATTTTACAACTGGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
63609594 -GGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
63609610 GGTAAACTAA
Statistics
Matches: 193, Mismatches: 29, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
25 3 0.02
26 38 0.20
27 144 0.75
28 8 0.04
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:63609438 original size:81 final size:79
Alignment explanation
Indices: 63609352--63609609 Score: 333
Period size: 81 Copynumber: 3.2 Consensus size: 79
63609342 TACCCTACAG
* * *
63609352 GGGTATTTTAGTAATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTTGG
1 GGGTATTTCAGTAATTTTACAAATCGAGG-TATTTCGGTAATTTTATAAA-CGAGGGTACTTTGG
*
63609417 TAATTTTACAAGTCGA
64 TAATTTTACAAATCGA
* * *
63609433 GGGTATTTCAATAATTTTACAAATCGAGGGTATTTCAGTAATTTTGTAAACTGAGGGTA-TTTCG
1 GGGTATTTCAGTAATTTTACAAATCGA-GGTATTTCGGTAATTTTATAAAC-GAGGGTACTTT-G
*
63609497 ATAATTTTACAAATCGA
63 GTAATTTTACAAATCGA
*
63609514 GGGTATTTCAGTAATTTTAC-AATTGACGGTATTTCGGTAATTTTATAAACCGAGGGTACTTTGG
1 GGGTATTTCAGTAATTTTACAAATCGA-GGTATTTCGGTAATTTTATAAA-CGAGGGTACTTTGG
* *
63609578 TAATTTTACAACTGGA
64 TAATTTTACAAATCGA
63609594 -GGTATTTCAGTAATTT
1 GGGTATTTCAGTAATTT
63609610 GGTAAACTAA
Statistics
Matches: 156, Mismatches: 16, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
79 16 0.10
80 51 0.33
81 87 0.56
82 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (79 bp):
GGGTATTTCAGTAATTTTACAAATCGAGGTATTTCGGTAATTTTATAAACGAGGGTACTTTGGTA
ATTTTACAAATCGA
Found at i:63611848 original size:58 final size:57
Alignment explanation
Indices: 63611776--63611886 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
63611766 TGAATGTGAC
* * *
63611776 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-ATGGGCCTAATGGGCCAGATACAGGTGATT
* * *
63611834 TGGGCCTAATGGGCCATATGAATATGAATGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGAATGGGCCTAATGGGCCAGATACAGGT
63611887 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGAATGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:63611874 original size:28 final size:29
Alignment explanation
Indices: 63611763--63611877 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
63611753 GTAAGCGTGA
* *
63611763 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
63611791 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
63611820 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
63611849 ATATGAATATGA-ATGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
63611877 A
1 A
63611878 GATACAGGTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
28 27 0.36
29 48 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:63624421 original size:27 final size:27
Alignment explanation
Indices: 63624388--63624442 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
63624378 GAATCTCATA
*
63624388 CCTGTAGGCTAGTATTACTAAAATACC
1 CCTGTAGGCTAGAATTACTAAAATACC
* *
63624415 CCTGTAGGGTAGAATTATTAAAATACC
1 CCTGTAGGCTAGAATTACTAAAATACC
63624442 C
1 C
63624443 TTGGTTTACA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (27 bp):
CCTGTAGGCTAGAATTACTAAAATACC
Found at i:63624457 original size:27 final size:27
Alignment explanation
Indices: 63624427--63624553 Score: 130
Period size: 27 Copynumber: 4.7 Consensus size: 27
63624417 TGTAGGGTAG
* *
63624427 AATTATTAAAATACCCTTGGTTTACAA
1 AATTATCAAAATACCCCTGGTTTACAA
* ***
63624454 AATTACCAAAATA-CCCTCAATTAGCAA
1 AATTATCAAAATACCCCTGGTTTA-CAA
* **
63624481 AATTATCACAATACCCCTGGTTTGTAA
1 AATTATCAAAATACCCCTGGTTTACAA
* **
63624508 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTATCAAAATACCCCTGGTTTACAA
63624535 AATTATCAAAATACCCCTG
1 AATTATCAAAATACCCCTG
63624554 ATTCTCGACC
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 6 0.07
27 70 0.85
28 6 0.07
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTATCAAAATACCCCTGGTTTACAA
Found at i:63624466 original size:54 final size:52
Alignment explanation
Indices: 63624401--63624553 Score: 146
Period size: 54 Copynumber: 2.8 Consensus size: 52
63624391 GTAGGCTAGT
* * * * *
63624401 ATTACTAAAATACCCCTGTAGGGTAGAATTATTAAAATACCCTTGGTTTACAAA
1 ATTACCAAAATACCCCTGTA--GCAAAATTATCAAAATACCCCTGGTTTACAAA
* **
63624455 ATTACCAAAATACCCTCAAT-TAGCAAAATTATCACAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCC-C--TGTAGCAAAATTATCAAAATACCCCTGGTTTACAAA
* *
63624509 ATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTG
1 ATTACCAAAATACCCCT-G-TAGCAAAATTATCAAAATACCCCTG
63624554 ATTCTCGACC
Statistics
Matches: 82, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
51 1 0.01
53 1 0.01
54 76 0.93
55 1 0.01
56 2 0.02
57 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (52 bp):
ATTACCAAAATACCCCTGTAGCAAAATTATCAAAATACCCCTGGTTTACAAA
Found at i:63624594 original size:61 final size:60
Alignment explanation
Indices: 63624503--63624616 Score: 149
Period size: 61 Copynumber: 1.9 Consensus size: 60
63624493 ACCCCTGGTT
* ***
63624503 TGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCAAAATACCCCTGATTCTCGACC
1 TGTAAAATTACCAAAATACCCATAACTTGT-AAATTACT-AAAATACCCCTGATTCTCGACC
* *
63624564 TGTAAAATTATCAAAATACCCATAACTTGTAAATTACTGAAATACCCCTGATT
1 TGTAAAATTACCAAAATACCCATAACTTGTAAATTACTAAAATACCCCTGATT
63624617 TGGAAAATTA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
60 20 0.43
61 26 0.57
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (60 bp):
TGTAAAATTACCAAAATACCCATAACTTGTAAATTACTAAAATACCCCTGATTCTCGACC
Found at i:63624718 original size:55 final size:54
Alignment explanation
Indices: 63624594--63624754 Score: 196
Period size: 55 Copynumber: 3.0 Consensus size: 54
63624584 CATAACTTGT
* * * * *
63624594 AAATTACTGAAATACCCCTGATTTGGAAAATTACCGAAATACCATTGATTTGGA
1 AAATTACAGAAATACCCTTGATTTGCAAAATTACCGAAATACCCTTGATTTGAA
* ** * *
63624648 AAATTACAGAAATACCCTTAATTTATAAAATTACAGAAATACCCTTGAATTTTAA
1 AAATTACAGAAATACCCTTGATTTGCAAAATTACCGAAATACCCTTG-ATTTGAA
* * *
63624703 AAATTACAGAAATACCATTGGTTTGCAAAATTACCGAAATACCCTTGGTTTG
1 AAATTACAGAAATACCCTTGATTTGCAAAATTACCGAAATACCCTTGATTTG
63624755 TAGATTTACC
Statistics
Matches: 89, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 43 0.48
55 46 0.52
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (54 bp):
AAATTACAGAAATACCCTTGATTTGCAAAATTACCGAAATACCCTTGATTTGAA
Found at i:63624764 original size:27 final size:27
Alignment explanation
Indices: 63624564--63624756 Score: 194
Period size: 27 Copynumber: 7.1 Consensus size: 27
63624554 ATTCTCGACC
* * *
63624564 TGTAAAATTATCA-AAATACCCATAACT
1 TGTAAAATTA-CAGAAATACCCTTGATT
* *
63624591 TGT-AAATTACTGAAATACCCCTGATT
1 TGTAAAATTACAGAAATACCCTTGATT
* * *
63624617 TGGAAAATTACCGAAATACCATTGATT
1 TGTAAAATTACAGAAATACCCTTGATT
* *
63624644 TGGAAAATTACAGAAATACCCTTAATT
1 TGTAAAATTACAGAAATACCCTTGATT
*
63624671 TATAAAATTACAGAAATACCCTTGAATT
1 TGTAAAATTACAGAAATACCCTTG-ATT
* *
63624699 T-TAAAAATTACAGAAATACCATTGGTT
1 TGT-AAAATTACAGAAATACCCTTGATT
* * *
63624726 TGCAAAATTACCGAAATACCCTTGGTT
1 TGTAAAATTACAGAAATACCCTTGATT
63624753 TGTA
1 TGTA
63624757 GATTTACCAA
Statistics
Matches: 141, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.01
26 19 0.13
27 97 0.69
28 24 0.17
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (27 bp):
TGTAAAATTACAGAAATACCCTTGATT
Found at i:63625228 original size:22 final size:22
Alignment explanation
Indices: 63625195--63625259 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
63625185 GCCAATTATT
* *
63625195 CTGATTATGGCTTTGTGCCAAC
1 CTGAATATGGCTCTGTGCCAAC
*
63625217 CT-ACATATGGCTCTATGCCAAC
1 CTGA-ATATGGCTCTGTGCCAAC
* *
63625239 CTGATTATGGCTGTGTGCCAA
1 CTGAATATGGCTCTGTGCCAA
63625260 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
CTGAATATGGCTCTGTGCCAAC
Found at i:63625506 original size:22 final size:22
Alignment explanation
Indices: 63625466--63625515 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
63625456 CTACGACGTT
*
63625466 TATGGCTATGTGCCATCCTGTG
1 TATGGCTATGTGCCATCCTGTC
***
63625488 TATGGCTATGTGTTGTCCTGTC
1 TATGGCTATGTGCCATCCTGTC
63625510 TATGGC
1 TATGGC
63625516 GTTGAGCCGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.12, C:0.20, G:0.28, T:0.40
Consensus pattern (22 bp):
TATGGCTATGTGCCATCCTGTC
Found at i:63641434 original size:27 final size:27
Alignment explanation
Indices: 63641394--63641538 Score: 132
Period size: 27 Copynumber: 5.3 Consensus size: 27
63641384 GATGGGTCAT
** *
63641394 AAATACCCCCGATTTGTAAAATTACCA
1 AAATACCCTTGATTTGTAAAATTACCG
63641421 AAATACCCTTGATTTGTAAAATTACCG
1 AAATACCCTTGATTTGTAAAATTACCG
* *
63641448 AAATA-CCTCTGGTTTGTAAAATGACCG
1 AAATACCCT-TGATTTGTAAAATTACCG
* * * ** *
63641475 TAATGCCCATG-TAAGGTAAAATGACCG
1 AAATACCCTTGAT-TTGTAAAATTACCG
**
63641502 AAATACCCTTGAAGTGTAAAATTACCG
1 AAATACCCTTGATTTGTAAAATTACCG
63641529 AAATATCCCT
1 AAATA-CCCT
63641539 GTAGAGCAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
26 4 0.04
27 86 0.90
28 6 0.06
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.28
Consensus pattern (27 bp):
AAATACCCTTGATTTGTAAAATTACCG
Found at i:63641549 original size:27 final size:27
Alignment explanation
Indices: 63641465--63641563 Score: 76
Period size: 27 Copynumber: 3.7 Consensus size: 27
63641455 TCTGGTTTGT
* * * *
63641465 AAAATGACCGTAATGCCCATGTAAG-GT
1 AAAATGACCGAAATACCCTTG-AAGAGC
* *
63641492 AAAATGACCGAAATACCCTTGAAGTGT
1 AAAATGACCGAAATACCCTTGAAGAGC
* *
63641519 AAAATTACCGAAATATCCC-TGTAGAGC
1 AAAATGACCGAAATA-CCCTTGAAGAGC
* *
63641546 AAAATGACTGTAATACCC
1 AAAATGACCGAAATACCC
63641564 CTATATGGTA
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.10
27 51 0.85
28 3 0.05
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.22
Consensus pattern (27 bp):
AAAATGACCGAAATACCCTTGAAGAGC
Found at i:63641550 original size:81 final size:81
Alignment explanation
Indices: 63641409--63641559 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
63641399 CCCCCGATTT
* ** ** *
63641409 GTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCTCTGGTTTGTAAAATGACC
1 GTAAAATGACCAAAATACCCTTGAAGTGTAAAATTACCGAAATACCTCTGGTGAGCAAAATGACC
63641474 GTAATGCCCATGTAAG
66 GTAATGCCCATGTAAG
*
63641490 GTAAAATGACCGAAATACCCTTGAAGTGTAAAATTACCGAAATATCC-CT-GTAGAGCAAAATGA
1 GTAAAATGACCAAAATACCCTTGAAGTGTAAAATTACCGAAATA-CCTCTGGT-GAGCAAAATGA
*
63641553 CTGTAAT
64 CCGTAAT
63641560 ACCCCTATAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
80 2 0.03
81 56 0.93
82 2 0.03
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (81 bp):
GTAAAATGACCAAAATACCCTTGAAGTGTAAAATTACCGAAATACCTCTGGTGAGCAAAATGACC
GTAATGCCCATGTAAG
Found at i:63641574 original size:81 final size:81
Alignment explanation
Indices: 63641409--63641580 Score: 195
Period size: 81 Copynumber: 2.1 Consensus size: 81
63641399 CCCCCGATTT
* ** ** *
63641409 GTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCGAAATACCTCTGGTTTGTAAAATGACC
1 GTAAAATGACCAAAATACCCTTGAAGTGTAAAATTACCGAAATACCTCTGGTGAGCAAAATGACC
* *
63641474 GTAATGCCCATGTAAG
66 GTAATACCCATATAAG
*
63641490 GTAAAATGACCGAAATACCCTTGAAGTGTAAAATTACCGAAATATCC-CT-GTAGAGCAAAATGA
1 GTAAAATGACCAAAATACCCTTGAAGTGTAAAATTACCGAAATA-CCTCTGGT-GAGCAAAATGA
* * *
63641553 CTGTAATACCCCTATATG
64 CCGTAATACCCATATAAG
*
63641571 GTAATATGAC
1 GTAAAATGAC
63641581 GATTATGCCC
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 2 0.03
81 72 0.95
82 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (81 bp):
GTAAAATGACCAAAATACCCTTGAAGTGTAAAATTACCGAAATACCTCTGGTGAGCAAAATGACC
GTAATACCCATATAAG
Found at i:63644120 original size:85 final size:85
Alignment explanation
Indices: 63643977--63644155 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
63643967 GGCCGGCCAT
63643977 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63644042 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
63644062 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63644127 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
63644147 GGGCATGGG
1 GAGCATGGG
63644156 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:63646407 original size:47 final size:47
Alignment explanation
Indices: 63646353--63646862 Score: 752
Period size: 47 Copynumber: 10.6 Consensus size: 47
63646343 GTATATTTGA
63646353 ATGAATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCAATGTG
* *
63646400 ATGAATGTGAAAGTGTATATATATGTGATAAGGACTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTG
* *
63646449 ATGAATGTGAAAGTGTATATATGTGATAAGGTCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63646496 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTG
*
63646545 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63646592 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTG
*
63646641 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63646688 ATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCAATGTG
* *
63646739 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* * * * *
63646786 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* *
63646833 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
63646863 TCCCGAAGGG
Statistics
Matches: 425, Mismatches: 27, Indels: 22
0.90 0.06 0.05
Matches are distributed among these distances:
47 246 0.58
49 132 0.31
50 2 0.00
51 45 0.11
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
Found at i:63646461 original size:96 final size:96
Alignment explanation
Indices: 63646353--63646862 Score: 839
Period size: 96 Copynumber: 5.3 Consensus size: 96
63646343 GTATATTTGA
63646353 ATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
63646418 ATATATGTGATAAGGACTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
63646449 ATGAATGTGAAAGTGTATATATGTGATAAGG-TCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCT-GAATGGCCAATGTGATGAATGTGAAAGTGTA
63646513 TATATATGTGATAAGGCCTAATGGCCGATGTG
65 TATATATGTGATAAGGCCTAATGGCCGATGTG
*
63646545 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTAT
63646610 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
*
63646641 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTG--T
63646706 ATATATATGTGATAAGGCCTAATGGCCGATGTG
64 ATATATATGTGATAAGGCCTAATGGCCGATGTG
* *
63646739 ATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATAGCCGATGTGATGAATGTGAAAGTG--
1 ATGAATGTGAAAGTGTATATATGTGATAAGG-CTGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
63646801 TATATATGTGACAGGGCCGAGTGGCCAACGTG
65 TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
63646833 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
63646863 TCCCGAAGGG
Statistics
Matches: 396, Mismatches: 13, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
94 54 0.14
95 1 0.00
96 249 0.63
98 91 0.23
99 1 0.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:63648758 original size:40 final size:40
Alignment explanation
Indices: 63648289--63648754 Score: 734
Period size: 40 Copynumber: 11.7 Consensus size: 40
63648279 GAGAATTGAG
* *
63648289 AGTGCTATATCCGGGCTAAGTCCCGAGGAGTATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
63648329 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
63648369 AGTGATATGTCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
63648409 AGTGATATATCCGGGTTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
63648449 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
63648489 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
**
63648529 AGTGATATATCTAGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
63648569 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
63648609 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * * *
63648649 AGTGATGTATTCGGGTTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * ** * *
63648689 AGTGATATATCTGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
63648729 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
63648755 AGAGTAATCA
Statistics
Matches: 392, Mismatches: 34, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 392 1.00
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:63648977 original size:25 final size:25
Alignment explanation
Indices: 63648936--63648987 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
63648926 TGTGTATTAA
63648936 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
63648961 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
63648986 TG
1 TG
63648988 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:63650594 original size:85 final size:85
Alignment explanation
Indices: 63650451--63650629 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
63650441 GGCCGGCCAT
63650451 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63650516 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
63650536 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
63650601 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
63650621 GGGCATGGG
1 GAGCATGGG
63650630 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:63652876 original size:47 final size:47
Alignment explanation
Indices: 63652822--63653327 Score: 814
Period size: 47 Copynumber: 10.6 Consensus size: 47
63652812 GTATATTTGA
*
63652822 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63652869 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTG
63652918 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
63652965 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63653012 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63653059 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTG
*
63653108 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
*
63653155 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTG
* *
63653204 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* * * * *
63653251 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
* * *
63653298 ATGGATGTGAAAGTGTATAAATATGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
63653328 TCCCGAAGGG
Statistics
Matches: 430, Mismatches: 23, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
47 295 0.69
49 135 0.31
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTG
Found at i:63652930 original size:96 final size:96
Alignment explanation
Indices: 63652822--63653327 Score: 858
Period size: 96 Copynumber: 5.3 Consensus size: 96
63652812 GTATATTTGA
63652822 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
63652887 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
*
63652918 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
63652981 ATATATGTGATAAGGCCTAATGGCCAATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
63653012 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
63653077 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
63653108 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
63653173 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
63653204 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
* * * * * *
63653267 ATATATGTGACAGGGCCGAGTGGCCAACGTG
66 ATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
63653298 ATGGATGTGAAAGTGTATAAATATGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
63653328 TCCCGAAGGG
Statistics
Matches: 392, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
94 145 0.37
96 247 0.63
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:63652966 original size:22 final size:22
Alignment explanation
Indices: 63652938--63653013 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
63652928 AAGTGTATAT
63652938 ATGTGATAAGGCCTAATGGCCA
1 ATGTGATAAGGCCTAATGGCCA
* *** ***
63652960 ATGTGATGAATGTGAAAGTGTATA
1 ATGTGAT-AAGGCCTAA-TGGCCA
63652984 TATGTGATAAGGCCTAATGGCCA
1 -ATGTGATAAGGCCTAATGGCCA
63653007 ATGTGAT
1 ATGTGAT
63653014 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 14 0.38
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCA
Found at i:63653080 original size:143 final size:142
Alignment explanation
Indices: 63652822--63653327 Score: 854
Period size: 143 Copynumber: 3.5 Consensus size: 142
63652812 GTATATTTGA
63652822 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-AT
63652887 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
65 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
63652952 AATGGCCAATGTG
130 AATGGCCGATGTG
*
63652965 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG-TA
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATA
* *
63653029 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
66 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
63653094 TAATGGCCGATGTG
129 TAATGGCCGATGTG
63653108 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-AT
63653173 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
65 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
63653238 AATAGCCGATGTG
130 AATGGCCGATGTG
* * * * *
63653251 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG-TA
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATA
* *
63653315 TAAATATGATAAG
66 TATATGTGATAAG
63653328 TCCCGAAGGG
Statistics
Matches: 344, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
141 58 0.17
143 241 0.70
145 45 0.13
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (142 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATA
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATGGCCGATGTG
Found at i:63659083 original size:28 final size:28
Alignment explanation
Indices: 63659047--63659144 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
63659037 AAAATAGCCT
* *
63659047 CACATGCTCGTGTCATACACAGCTGAAA
1 CACACGCTCGTGTCATACACGGCTGAAA
*
63659075 CACACGCTCGTGTAATACACGGCTGAAA
1 CACACGCTCGTGTCATACACGGCTGAAA
*
63659103 CACACGC-CTGTGTTATACACGGCTGAAA
1 CACACGCTC-GTGTCATACACGGCTGAAA
*
63659131 CACACACTCGTGTC
1 CACACGCTCGTGTC
63659145 TCAAGCCGTG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 1 0.02
28 60 0.97
29 1 0.02
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (28 bp):
CACACGCTCGTGTCATACACGGCTGAAA
Found at i:63659971 original size:21 final size:21
Alignment explanation
Indices: 63659945--63660068 Score: 162
Period size: 21 Copynumber: 5.9 Consensus size: 21
63659935 ACATGGCAAC
63659945 AGAAGCTCGAAAGAGCTGAAT
1 AGAAGCTCGAAAGAGCTGAAT
* *
63659966 AGAAGCTCGTAAGAGCTGAAC
1 AGAAGCTCGAAAGAGCTGAAT
63659987 AGAAGCTCGTAAA-AGCTGAAT
1 AGAAGCTCG-AAAGAGCTGAAT
* *
63660008 AGAAGCTCGTAAGAGCTAAAT
1 AGAAGCTCGAAAGAGCTGAAT
* *
63660029 AGAAGCTC-AAAGGAGCTAAAC
1 AGAAGCTCGAAA-GAGCTGAAT
63660050 AGAAGCTCGAAAGAGCTGA
1 AGAAGCTCGAAAGAGCTGA
63660069 TCCACGCGAG
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
20 4 0.04
21 81 0.90
22 5 0.06
ACGTcount: A:0.43, C:0.16, G:0.27, T:0.15
Consensus pattern (21 bp):
AGAAGCTCGAAAGAGCTGAAT
Found at i:63660022 original size:63 final size:63
Alignment explanation
Indices: 63659945--63660068 Score: 180
Period size: 63 Copynumber: 2.0 Consensus size: 63
63659935 ACATGGCAAC
* * *
63659945 AGAAGCTCGAAAGAGCTGAATAGAAGCTCGTAA-GAGCTGAACAGAAGCTCGTAAA-AGCTGAAT
1 AGAAGCTCGAAAGAGCTAAATAGAAGCTC-AAAGGAGCTAAACAGAAGCTCG-AAAGAGCTGAAT
*
63660008 AGAAGCTCGTAAGAGCTAAATAGAAGCTCAAAGGAGCTAAACAGAAGCTCGAAAGAGCTGA
1 AGAAGCTCGAAAGAGCTAAATAGAAGCTCAAAGGAGCTAAACAGAAGCTCGAAAGAGCTGA
63660069 TCCACGCGAG
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
62 5 0.09
63 50 0.91
ACGTcount: A:0.43, C:0.16, G:0.27, T:0.15
Consensus pattern (63 bp):
AGAAGCTCGAAAGAGCTAAATAGAAGCTCAAAGGAGCTAAACAGAAGCTCGAAAGAGCTGAAT
Found at i:63664043 original size:21 final size:22
Alignment explanation
Indices: 63664003--63664043 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
63663993 AAATAAACTA
*
63664003 AAAACTAGAACCTTAAGAAAAC
1 AAAACTAGAACCTAAAGAAAAC
*
63664025 AAAACTA-AATCTAAAGAAA
1 AAAACTAGAACCTAAAGAAA
63664044 GAAACTAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.63, C:0.15, G:0.07, T:0.15
Consensus pattern (22 bp):
AAAACTAGAACCTAAAGAAAAC
Found at i:63676988 original size:40 final size:40
Alignment explanation
Indices: 63676911--63677091 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
63676901 ACCCAAGTAT
*
63676911 CTTCGGGACTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
63676950 CTTCGGGTCTTAGCCCAGATATAGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
63676990 CTTCGGGATTTAGCCCGGATATAATCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
63677030 CTTCGGGACTTAGCCCGGGTATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
63677070 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
63677092 CATCCGAATA
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
39 12 0.10
40 112 0.90
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:63681271 original size:13 final size:13
Alignment explanation
Indices: 63681253--63681279 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63681243 ACCATCCTCT
63681253 TTGTCATAGTAGA
1 TTGTCATAGTAGA
63681266 TTGTCATAGTAGA
1 TTGTCATAGTAGA
63681279 T
1 T
63681280 GATTCTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (13 bp):
TTGTCATAGTAGA
Found at i:63688934 original size:43 final size:42
Alignment explanation
Indices: 63688871--63688957 Score: 138
Period size: 43 Copynumber: 2.0 Consensus size: 42
63688861 TGATGATGCC
* *
63688871 AAAAAAGAAGTGGCCGAAGGAAGCCAGGGGAAACTATGGAAG
1 AAAAAAGAAGTGGCCAAAGGAAGCCAAGGGAAACTATGGAAG
*
63688913 AAAAAAGAAGGTGTCCAAAGGAAGCCAAGGGAAACTATGGAAG
1 AAAAAAGAA-GTGGCCAAAGGAAGCCAAGGGAAACTATGGAAG
63688956 AA
1 AA
63688958 TTTAGAGATG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 9 0.22
43 32 0.78
ACGTcount: A:0.48, C:0.11, G:0.32, T:0.08
Consensus pattern (42 bp):
AAAAAAGAAGTGGCCAAAGGAAGCCAAGGGAAACTATGGAAG
Found at i:63698487 original size:20 final size:20
Alignment explanation
Indices: 63698462--63698510 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
63698452 GGGTCACGCG
63698462 CCCATGTGGCTTGCGACACA
1 CCCATGTGGCTTGCGACACA
* *
63698482 CCCATGTGGCTTGGGACACG
1 CCCATGTGGCTTGCGACACA
*
63698502 CCCACGTGG
1 CCCATGTGG
63698511 GCAGGCCGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.16, C:0.35, G:0.31, T:0.18
Consensus pattern (20 bp):
CCCATGTGGCTTGCGACACA
Found at i:63700034 original size:14 final size:15
Alignment explanation
Indices: 63700017--63700056 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
63700007 AAAGATGACA
63700017 AAGAAA-CCAAGATG
1 AAGAAATCCAAGATG
63700031 AAGAAATCCAAGAT-
1 AAGAAATCCAAGATG
63700045 AGAGAAATCCAA
1 A-AGAAATCCAA
63700057 AATATGATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAAGATG
Found at i:63705660 original size:29 final size:29
Alignment explanation
Indices: 63705605--63705660 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
63705595 AGTAAAATTT
**
63705605 GGGCCTAAGCCCCTTTTTAGTTTCAGTTA
1 GGGCCTAAGCCCCTTTTTAGTAGCAGTTA
*
63705634 GGGCCTTAG-CCCTTTTTCAGTAGCAGT
1 GGGCCTAAGCCCCTTTTT-AGTAGCAGT
63705661 AGAAGTCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (29 bp):
GGGCCTAAGCCCCTTTTTAGTAGCAGTTA
Found at i:63710201 original size:33 final size:33
Alignment explanation
Indices: 63710159--63710241 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 33
63710149 TGTATGCATT
63710159 ACTGATACTG-TACTAAATTGGGCTAAGGCCCAC
1 ACTGATACTGCTACTAAA-TGGGCTAAGGCCCAC
*
63710192 ACTGATACTGTTACCGT-AATGGGCTAAGGCCCAC
1 ACTGATACTGCTA-C-TAAATGGGCTAAGGCCCAC
* *
63710226 ATTGATAATGCTACTA
1 ACTGATACTGCTACTA
63710242 TTAAGGGCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
32 1 0.02
33 11 0.26
34 27 0.63
35 3 0.07
36 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (33 bp):
ACTGATACTGCTACTAAATGGGCTAAGGCCCAC
Found at i:63711848 original size:14 final size:15
Alignment explanation
Indices: 63711831--63711870 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
63711821 AAAGATGACA
63711831 AAGAAA-CCAAGATG
1 AAGAAATCCAAGATG
63711845 AAGAAATCCAAGAT-
1 AAGAAATCCAAGATG
63711859 AGAGAAATCCAA
1 A-AGAAATCCAA
63711871 AATATGATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.57, C:0.15, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAAGATG
Found at i:63717976 original size:15 final size:15
Alignment explanation
Indices: 63717944--63717972 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
63717934 ATTTTATGTG
63717944 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
63717959 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
63717973 ATTTTTGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:63719145 original size:43 final size:43
Alignment explanation
Indices: 63719097--63719265 Score: 166
Period size: 43 Copynumber: 4.0 Consensus size: 43
63719087 TAGGATTTTT
* * * *
63719097 GATATGTGTTCTCGTATAAAACCATGTCTGGGATGTTGGCATC
1 GATATGTGATATCGTGTAAGACCATGTCTGGGATGTTGGCATC
** **
63719140 GATATGTGATTAT-GTGTAAGACCATGTCTGGGACATCAGCATC
1 GATATGTGA-TATCGTGTAAGACCATGTCTGGGATGTTGGCATC
* *
63719183 G-TATTTGAT-TCGTGTAAGACCCTGTCTGGGATAG-TGGCATC
1 GATATGTGATATCGTGTAAGACCATGTCTGGGAT-GTTGGCATC
* * * *
63719224 TATATGTGATAGCATGTAAGACCACGTCTGGGATGTTGGCAT
1 GATATGTGATATCGTGTAAGACCATGTCTGGGATGTTGGCAT
63719266 TGTACAATAT
Statistics
Matches: 100, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
40 1 0.01
41 25 0.25
42 14 0.14
43 58 0.58
44 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
GATATGTGATATCGTGTAAGACCATGTCTGGGATGTTGGCATC
Found at i:63719565 original size:14 final size:14
Alignment explanation
Indices: 63719546--63719575 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
63719536 GAAATGATTC
63719546 ATGAATATATGTAT
1 ATGAATATATGTAT
*
63719560 ATGAATTTATGTAT
1 ATGAATATATGTAT
63719574 AT
1 AT
63719576 TCGGTTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (14 bp):
ATGAATATATGTAT
Found at i:63723251 original size:34 final size:34
Alignment explanation
Indices: 63723170--63723269 Score: 89
Period size: 34 Copynumber: 2.9 Consensus size: 34
63723160 ATTCTTTGTT
63723170 TGCATACTGTACTGAAATAGGCTAAGGCCCAGAC
1 TGCATACTGTACTGAAATAGGCTAAGGCCCAGAC
* * * * *
63723204 TGCCT-CTATTACTGAAATGGGCTCAGGCCTAGAC
1 TGCATACT-GTACTGAAATAGGCTAAGGCCCAGAC
63723238 TG-ATACTGCTACTGAGAA-AGGGGCTAAGGCCC
1 TGCATACTG-TACTGA-AATA--GGCTAAGGCCC
63723270 TAACTGGAAC
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
33 3 0.06
34 36 0.72
35 2 0.04
36 9 0.18
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (34 bp):
TGCATACTGTACTGAAATAGGCTAAGGCCCAGAC
Found at i:63724447 original size:25 final size:24
Alignment explanation
Indices: 63724419--63724472 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
63724409 ACAGAATAAT
* * *
63724419 GGTAAGCTCATATGAGTTGAGTATC
1 GGTAAGCTCATAAGAGCTGA-AATC
63724444 GGTAAGCTCATAAGAGCTGAAATC
1 GGTAAGCTCATAAGAGCTGAAATC
63724468 GGTAA
1 GGTAA
63724473 CCCTAATGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 8 0.31
25 18 0.69
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.26
Consensus pattern (24 bp):
GGTAAGCTCATAAGAGCTGAAATC
Found at i:63738320 original size:43 final size:43
Alignment explanation
Indices: 63738263--63738426 Score: 160
Period size: 43 Copynumber: 3.8 Consensus size: 43
63738253 AATGCCAACA
*
63738263 TCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTG
1 TCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTG
* * *
63738306 TCCCAGACAG-GGTCTTACACGAAATCATATA-CGATGTCGA-TG
1 TCCCAGAC-GTGGTCTTACACGTAATCAAATATCGATG-CCACTG
* *
63738348 TCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAC-G
1 TCCCAGACGTGGTCTTACACGT-AATC-AAATATCGATGCC-ACTG
* *
63738392 TCCCAAACGTGGTCTTACACGATAA-CACATATCGA
1 TCCCAGACGTGGTCTTACACG-TAATCAAATATCGA
63738427 AGTCCTATGT
Statistics
Matches: 98, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 27 0.28
43 40 0.41
44 30 0.31
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTG
Found at i:63739995 original size:14 final size:15
Alignment explanation
Indices: 63739968--63739997 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
63739958 CCATGCATCA
63739968 ATCCCTTAATCCCTC
1 ATCCCTTAATCCCTC
63739983 ATCCCTT-ATCCCTC
1 ATCCCTTAATCCCTC
63739997 A
1 A
63739998 CATCTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (15 bp):
ATCCCTTAATCCCTC
Found at i:63756059 original size:47 final size:47
Alignment explanation
Indices: 63755945--63756112 Score: 243
Period size: 46 Copynumber: 3.6 Consensus size: 47
63755935 TGATATGTGT
*
63755945 GCTAGTGTAAGACATGTCTGGGACATGCACCAGCTACATTATGAG-A
1 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCTACATTATGAGAA
63755991 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCTACATTATGAGAA
1 GCTAGTGTAAGACATGTCTGGGACATGCACCGGCTACATTATGAGAA
* * *
63756038 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATAT-ACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCACCGG-CTAC-A-TTATGAGAA
*
63756086 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
63756113 GCATCAGCTT
Statistics
Matches: 113, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
46 44 0.39
47 34 0.30
48 32 0.28
49 3 0.03
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCACCGGCTACATTATGAGAA
Found at i:63756256 original size:49 final size:48
Alignment explanation
Indices: 63755945--63756258 Score: 244
Period size: 49 Copynumber: 6.6 Consensus size: 48
63755935 TGATATGTGT
* * * *
63755945 GCTAGTGTAAGACATGTCTGGGACAT-GCA-CCAGCTAC-ATTATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCT-CGATTATGAAA
* * *
63755991 GCTAGTGTAAGACATGTCTGGGACAT-GCACCG-GCTAC-ATTATGAGAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCT-CGATTATGA-AA
* * *
63756038 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGA-TTATGA-AA
* * * *
63756086 GCTAGTGTAAGACCTGTCTGGGACATGGCATC-AGCTTG-TTGTG--T
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATTATGAAA
* * * *
63756130 G-TCAGTGTAAGACCTGTCTAGGACATGGAATCGACAC-CGATAGATGAGA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGAT-TATGAAA
*
63756179 G-TCAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATATATGAAA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGAT-TATGAAA
* *
63756228 GTTAGTGTAAGACCTATCTGGGACATGGCAT
1 GCTAGTGTAAGACCTGTCTGGGACATGGCAT
63756259 TAACTTTGAT
Statistics
Matches: 227, Mismatches: 25, Indels: 29
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.00
44 28 0.12
45 2 0.01
46 45 0.20
47 36 0.16
48 35 0.15
49 79 0.35
50 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATTATGAAA
Found at i:63766217 original size:9 final size:9
Alignment explanation
Indices: 63766183--63766217 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
63766173 TCTCGTGTAC
63766183 TGGGCCTCAA
1 TGGGCC-CAA
*
63766193 TGGGCCAAA
1 TGGGCCCAA
63766202 TGGGCCCAA
1 TGGGCCCAA
63766211 TGGGCCC
1 TGGGCCC
63766218 CGTGGGCCCG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.20, C:0.31, G:0.34, T:0.14
Consensus pattern (9 bp):
TGGGCCCAA
Found at i:63776640 original size:64 final size:64
Alignment explanation
Indices: 63776440--63776685 Score: 289
Period size: 64 Copynumber: 3.8 Consensus size: 64
63776430 CATAATTTTG
* * * *
63776440 GCTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAC-TTTATCTCGTA
1 GCTCTCTTGT-CTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATTTATCTCGTA
* * * * * * * *
63776503 GCTCTCTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTACATTTAACTCG
1 GCTCTCTTGTCTACATGGTG---TACACATAGTACCACCCATGCGACCTAGCTACATTTATCTCG
63776568 TA
63 TA
* * *
63776570 GGTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCTCGTA
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATTTATCTCGTA
* *
63776634 GCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGTGACCTAGCTAC
1 GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTAC
63776686 CTCATAATGT
Statistics
Matches: 154, Mismatches: 24, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
63 18 0.12
64 85 0.55
66 23 0.15
67 28 0.18
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (64 bp):
GCTCTCTTGTCTACATGGTGTACACATAGTACCACCCATGCGACCTAGCTACATTTATCTCGTA
Found at i:63776715 original size:130 final size:126
Alignment explanation
Indices: 63776440--63776715 Score: 275
Period size: 130 Copynumber: 2.1 Consensus size: 126
63776430 CATAATTTTG
* * *
63776440 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCACTTTATCTCGTAGC
1 GCTCTCTTGT--ACATGGTGAACACATAGTACCACCCATGCGACCTAGCCACTATATCTCGTAGC
* * * * *
63776505 TCTCTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTACATTTAACTCGTA
64 TCTCTTGTCTACATGGTG--CTACACATAGAACCACACATGCAACCTAGCTACATATAACTCGTA
* * * *
63776570 GGTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATATATCTCGTAG
1 GCTCTCTTG--TACATGGTGAACACATAGTACCACCCATGCGACCTAGCCAC-TATATCTCGTAG
* * * ** * *
63776635 CTCTCTTGTCTACATGGTG-TACACATAGTATCACCCATGTGACCTAGCTACCTCATAATGTCTT
63 CTCTCTTGTCTACATGGTGCTACACATAGAACCACACATGCAACCTAGCTACAT-ATAA---CTC
63776699 GTA
124 GTA
63776702 GCTCTCTTGTACAT
1 GCTCTCTTGTACAT
63776716 ATGGTATACA
Statistics
Matches: 119, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
128 25 0.21
129 3 0.03
130 48 0.40
131 29 0.24
132 14 0.12
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.32
Consensus pattern (126 bp):
GCTCTCTTGTACATGGTGAACACATAGTACCACCCATGCGACCTAGCCACTATATCTCGTAGCTC
TCTTGTCTACATGGTGCTACACATAGAACCACACATGCAACCTAGCTACATATAACTCGTA
Found at i:63777249 original size:30 final size:30
Alignment explanation
Indices: 63777215--63777275 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
63777205 TCCTAAACTC
63777215 AAACTTTTACAAAATTACACTTTTACCCCT
1 AAACTTTTACAAAATTACACTTTTACCCCT
* * * *
63777245 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTACAAAATTACACTTTTACCCCT
63777275 A
1 A
63777276 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.39
Consensus pattern (30 bp):
AAACTTTTACAAAATTACACTTTTACCCCT
Found at i:63779404 original size:21 final size:18
Alignment explanation
Indices: 63779347--63779403 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 18
63779337 TTGAGCAGTT
63779347 TTTCACTTAAGTTAAAAA
1 TTTCACTTAAGTTAAAAA
**
63779365 TTTCACTTTATTTTAAAAA
1 TTTCAC-TTAAGTTAAAAA
*
63779384 TGTTTCACTTGAGTTAAAAA
1 --TTTCACTTAAGTTAAAAA
63779404 AATATTTGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
18 6 0.19
19 10 0.32
20 9 0.29
21 6 0.19
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.44
Consensus pattern (18 bp):
TTTCACTTAAGTTAAAAA
Found at i:63780137 original size:16 final size:16
Alignment explanation
Indices: 63780116--63780147 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63780106 AATTGGGTTG
*
63780116 AGAAAATTATTTAATT
1 AGAAAATTAATTAATT
63780132 AGAAAATTAATTAATT
1 AGAAAATTAATTAATT
63780148 TAAATTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
AGAAAATTAATTAATT
Found at i:63780610 original size:30 final size:30
Alignment explanation
Indices: 63780574--63780638 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
63780564 ACTGAAAGTA
63780574 AGAAAATTATTTCTGATTTTGTGTTTGATT
1 AGAAAATTATTTCTGATTTTGTGTTTGATT
*
63780604 AGAAAATTATTTTTGATTTTGTGTTTGATT
1 AGAAAATTATTTCTGATTTTGTGTTTGATT
*
63780634 CGAAA
1 AGAAA
63780639 TTGTTCAAGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.29, C:0.03, G:0.17, T:0.51
Consensus pattern (30 bp):
AGAAAATTATTTCTGATTTTGTGTTTGATT
Found at i:63786230 original size:19 final size:20
Alignment explanation
Indices: 63786204--63786247 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
63786194 ATTTTAATAA
* *
63786204 ATTA-TTTAATATTTAAATT
1 ATTATTTTAATAATAAAATT
63786223 -TTATTTTAATAATAAAATT
1 ATTATTTTAATAATAAAATT
63786242 ATTATT
1 ATTATT
63786248 GAAAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 3 0.14
19 13 0.62
20 5 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTATTTTAATAATAAAATT
Found at i:63786827 original size:11 final size:11
Alignment explanation
Indices: 63786811--63786835 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
63786801 TAATATATGT
63786811 AATTTAAATTA
1 AATTTAAATTA
63786822 AATTTAAATTA
1 AATTTAAATTA
63786833 AAT
1 AAT
63786836 ATTATTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATTTAAATTA
Found at i:63786905 original size:21 final size:20
Alignment explanation
Indices: 63786876--63786915 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
63786866 TGATTATTAA
63786876 AAATATTTTATTATTATAAAAT
1 AAATATTTTATT-TT-TAAAAT
63786898 AAAT-TTTTATTTTTAAAA
1 AAATATTTTATTTTTAAAA
63786916 GGAAATTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 2 0.11
21 7 0.39
22 4 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
AAATATTTTATTTTTAAAAT
Found at i:63786921 original size:20 final size:21
Alignment explanation
Indices: 63786876--63786922 Score: 53
Period size: 20 Copynumber: 2.2 Consensus size: 21
63786866 TGATTATTAA
*
63786876 AAATATTTTATTATTATAAAAT
1 AAAT-TTTTATTATTATAAAAG
63786898 AAATTTTTATT-TT-TAAAAGG
1 AAATTTTTATTATTATAAAA-G
63786918 AAATT
1 AAATT
63786923 GCACTATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 5 0.22
20 7 0.30
21 7 0.30
22 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (21 bp):
AAATTTTTATTATTATAAAAG
Found at i:63801148 original size:58 final size:58
Alignment explanation
Indices: 63801080--63801198 Score: 238
Period size: 58 Copynumber: 2.1 Consensus size: 58
63801070 CACTGAAGTG
63801080 AGTTAATCCCTTGCTTGTTTTATTGGATTAAATTTTGGTTGTTAATTGGTTGATTTTT
1 AGTTAATCCCTTGCTTGTTTTATTGGATTAAATTTTGGTTGTTAATTGGTTGATTTTT
63801138 AGTTAATCCCTTGCTTGTTTTATTGGATTAAATTTTGGTTGTTAATTGGTTGATTTTT
1 AGTTAATCCCTTGCTTGTTTTATTGGATTAAATTTTGGTTGTTAATTGGTTGATTTTT
63801196 AGT
1 AGT
63801199 CGTAAATAAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 61 1.00
ACGTcount: A:0.19, C:0.07, G:0.19, T:0.55
Consensus pattern (58 bp):
AGTTAATCCCTTGCTTGTTTTATTGGATTAAATTTTGGTTGTTAATTGGTTGATTTTT
Found at i:63809666 original size:35 final size:36
Alignment explanation
Indices: 63809626--63809698 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 36
63809616 AGCCTGTCCA
* * *
63809626 TGACGAAAAACTTTGAACCTTTATCCATTT-CCATG
1 TGACGAAAAACTCTGAACCTCTACCCATTTCCCATG
*
63809661 TGACGACAAACTCTGAACCTCTACCCATTTCCCATG
1 TGACGAAAAACTCTGAACCTCTACCCATTTCCCATG
63809697 TG
1 TG
63809699 TAGTAGTGGC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
35 26 0.79
36 7 0.21
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (36 bp):
TGACGAAAAACTCTGAACCTCTACCCATTTCCCATG
Found at i:63814711 original size:29 final size:29
Alignment explanation
Indices: 63814679--63814752 Score: 123
Period size: 28 Copynumber: 2.6 Consensus size: 29
63814669 AACTTATAGA
63814679 TAGTTTTTATATTTTTATTTAATCAATTT
1 TAGTTTTTATATTTTTATTTAATCAATTT
63814708 TAGTTTTTATA-TTTTATTTAATCAATTT
1 TAGTTTTTATATTTTTATTTAATCAATTT
* *
63814736 TAATTTCTATATTTTTA
1 TAGTTTTTATATTTTTA
63814753 AAATTTAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 26 0.62
29 16 0.38
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (29 bp):
TAGTTTTTATATTTTTATTTAATCAATTT
Found at i:63814735 original size:14 final size:14
Alignment explanation
Indices: 63814691--63814737 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
63814681 GTTTTTATAT
63814691 TTTTATTTAATCAA
1 TTTTATTTAATCAA
*
63814705 TTTTAGTTT--TTATA
1 TTTTA-TTTAATCA-A
63814719 TTTTATTTAATCAA
1 TTTTATTTAATCAA
63814733 TTTTA
1 TTTTA
63814738 ATTTCTATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
13 5 0.19
14 17 0.63
15 5 0.19
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (14 bp):
TTTTATTTAATCAA
Found at i:63820658 original size:26 final size:26
Alignment explanation
Indices: 63820624--63820837 Score: 131
Period size: 26 Copynumber: 8.5 Consensus size: 26
63820614 GTACATAGTA
63820624 CCTGCTAAATAATCACTGGCTCAAAG
1 CCTGCTAAATAATCACTGGCTCAAAG
*
63820650 CCTACTAAATAATCACTGGCTCAAAG
1 CCTGCTAAATAATCACTGGCTCAAAG
* * * * * * *
63820676 CTTGCTAGATAAACTCTAGCTTAATG
1 CCTGCTAAATAATCACTGGCTCAAAG
**
63820702 CCTGCTAAATAATCA-TCGATTCAAAG
1 CCTGCTAAATAATCACT-GGCTCAAAG
* * * * *
63820728 CCTGCTAGATAAACACCGACTCAAGG
1 CCTGCTAAATAATCACTGGCTCAAAG
* *
63820754 CATGCTAAATAATTA-TCGGCTC--A-
1 CCTGCTAAATAATCACT-GGCTCAAAG
* ** *
63820777 ---GCTAGATAGA-CACCAGCTCAAGG
1 CCTGCTAAATA-ATCACTGGCTCAAAG
*
63820800 CCTACTAAATAATCACTGGCTCAAAG
1 CCTGCTAAATAATCACTGGCTCAAAG
*
63820826 CCTACTAAATAA
1 CCTGCTAAATAA
63820838 AGTACATATT
Statistics
Matches: 136, Mismatches: 40, Indels: 24
0.68 0.20 0.12
Matches are distributed among these distances:
20 12 0.09
21 1 0.01
25 2 0.01
26 121 0.89
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (26 bp):
CCTGCTAAATAATCACTGGCTCAAAG
Found at i:63820821 original size:46 final size:46
Alignment explanation
Indices: 63820731--63820822 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 46
63820721 TTCAAAGCCT
* *
63820731 GCTAGATAAACACCGACTCAAGGCATGCTAAATAATTATCGGCTCA
1 GCTAGATAAACACCGACTCAAGGCATACTAAATAATCATCGGCTCA
* *
63820777 GCTAGATAGACACC-AGCTCAAGGCCTACTAAATAATCA-CTGGCTCA
1 GCTAGATAAACACCGA-CTCAAGGCATACTAAATAATCATC-GGCTCA
63820823 AAGCCTACTA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
45 2 0.05
46 38 0.95
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (46 bp):
GCTAGATAAACACCGACTCAAGGCATACTAAATAATCATCGGCTCA
Found at i:63822941 original size:66 final size:66
Alignment explanation
Indices: 63822818--63822943 Score: 146
Period size: 66 Copynumber: 1.9 Consensus size: 66
63822808 GTTCACTAGG
* ** * * *
63822818 TCCAAACTAACGATTGCAATTAGCCAAGCCTACTAGCAACCCCGGTTCGCTAGGCCTACTAGCAA
1 TCCAAACCAACGATTGCAATTAGCCAAGCCTACTAGCAACCCCAATTCACCAAGCCTACTAGCAA
63822883 A
66 A
* * * *
63822884 TCCAAACCAACGATTGCAATTCA-TCAAGCCTACTGGCGACCCTAATTCACCAAGCCTACT
1 TCCAAACCAACGATTGCAATT-AGCCAAGCCTACTAGCAACCCCAATTCACCAAGCCTACT
63822944 GGTGAATCTT
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
66 48 0.98
67 1 0.02
ACGTcount: A:0.32, C:0.33, G:0.14, T:0.21
Consensus pattern (66 bp):
TCCAAACCAACGATTGCAATTAGCCAAGCCTACTAGCAACCCCAATTCACCAAGCCTACTAGCAA
A
Found at i:63835956 original size:58 final size:58
Alignment explanation
Indices: 63835889--63836028 Score: 235
Period size: 58 Copynumber: 2.4 Consensus size: 58
63835879 GACGTATAAT
* *
63835889 AGGATTACCAGTCTAGGCTAAATCCTAAATGTAACATATACTCGAGAGATATCGTATC
1 AGGATTACCAGTCCAGGCTAAATCCTAAATATAACATATACTCGAGAGATATCGTATC
63835947 AGGATTACCAGTCCAGGCTAAATCCTAAATATAACATATACTCGAGAGATATCGTATC
1 AGGATTACCAGTCCAGGCTAAATCCTAAATATAACATATACTCGAGAGATATCGTATC
* * *
63836005 AAGATTACCCGTCCGGGCTAAATC
1 AGGATTACCAGTCCAGGCTAAATC
63836029 TTTCCTATAA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
58 77 1.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (58 bp):
AGGATTACCAGTCCAGGCTAAATCCTAAATATAACATATACTCGAGAGATATCGTATC
Found at i:63838951 original size:43 final size:43
Alignment explanation
Indices: 63838903--63839148 Score: 269
Period size: 43 Copynumber: 5.7 Consensus size: 43
63838893 TATATTACAA
* *
63838903 TATTATCCGATGATGCACTATGTGTGCCAGTATTTTACTTCGG
1 TATTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCGG
* * * ** * *
63838946 TATTATCCAATAATGCATTATGCATGCCAATATGTTGCTTCAG
1 TATTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCGG
* * * * *
63838989 TATTATCCGATGATACATTGTGTATGCCAGTATGTTGCTTTGG
1 TATTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCGG
* * * *
63839032 TTTTATCCAATGAAGCACTATGTGTGGCCA-TATGTTGCTTCGA
1 TATTATCCGATGATGCACTATGTGT-GCCAGTATGTTGCTTCGG
* * *
63839075 TTTTATCCGATGATGCACTATGTGTGCCAATATGTTGCTTCAG
1 TATTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCGG
* *
63839118 TATTATCTGATGATGCACTGTGTGTGCCAGT
1 TATTATCCGATGATGCACTATGTGTGCCAGT
63839149 TTAATTGCAC
Statistics
Matches: 167, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
42 4 0.02
43 159 0.95
44 4 0.02
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (43 bp):
TATTATCCGATGATGCACTATGTGTGCCAGTATGTTGCTTCGG
Found at i:63839140 original size:129 final size:129
Alignment explanation
Indices: 63838905--63839148 Score: 337
Period size: 129 Copynumber: 1.9 Consensus size: 129
63838895 TATTACAATA
* * * * *
63838905 TTATCCGATGATGCACTATGTGTGCCAGTATTTTACTTCGGTATTATCCAATAATGCATTATGCA
1 TTATCCAATGAAGCACTATGTGTGCCAGTATGTTACTTCGATATTATCCAATAATGCACTATGCA
*
63838970 TGCCAATATGTTGCTTCAGTATTATCCGATGATACATTGTGTATGCCAGTATGTTGCTTTGGTT
66 TGCCAATATGTTGCTTCAGTATTATCCGATGATACACTGTGTATGCCAGTATGTTGCTTTGGTT
* * * * *
63839034 TTATCCAATGAAGCACTATGTGTGGCCA-TATGTTGCTTCGATTTTATCCGATGATGCACTATGT
1 TTATCCAATGAAGCACTATGTGT-GCCAGTATGTTACTTCGATATTATCCAATAATGCACTATGC
* * * *
63839098 GTGCCAATATGTTGCTTCAGTATTATCTGATGATGCACTGTGTGTGCCAGT
65 ATGCCAATATGTTGCTTCAGTATTATCCGATGATACACTGTGTATGCCAGT
63839149 TTAATTGCAC
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
129 95 0.96
130 4 0.04
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.39
Consensus pattern (129 bp):
TTATCCAATGAAGCACTATGTGTGCCAGTATGTTACTTCGATATTATCCAATAATGCACTATGCA
TGCCAATATGTTGCTTCAGTATTATCCGATGATACACTGTGTATGCCAGTATGTTGCTTTGGTT
Found at i:63839183 original size:129 final size:126
Alignment explanation
Indices: 63838893--63839185 Score: 293
Period size: 129 Copynumber: 2.3 Consensus size: 126
63838883 ATGTGGAGGT
* * * * *
63838893 TATATTACAATATTATCCGATGATGCACTATGTGTGCCAGTATTTTACTTCGGTATTATCCAATA
1 TATATTGCACTATTATCCGATGATACACTATGTGTGCCAGTATGTTACTTCGATATTATCCAATA
* *
63838958 ATGCATTATGCATGCCAATATGTTGCTTCAGTATTATCCGATGATACATTGTGTATGCCAG
66 ATGCACTATGCATGCCAATATGTTGCTTCAGTATTATCCGATGATACACTGTGTATGCCAG
* ** * * * *
63839019 TATGTTGCTTTGGTTTTATCCAATGA-AGCACTATGTGTGGCCA-TATGTTGCTTCGATTTTATC
1 TATATTGC---ACTATTATCCGATGATA-CACTATGTGT-GCCAGTATGTTACTTCGATATTATC
* * ** * * *
63839082 CGATGATGCACTATGTGTGCCAATATGTTGCTTCAGTATTATCTGATGATGCACTGTGTGTGCCA
61 CAATAATGCACTATGCATGCCAATATGTTGCTTCAGTATTATCCGATGATACACTGTGTATGCCA
63839147 G
126 G
* *
63839148 TTTAATTGCACTATTCATCCGATGATATACTTATGTGT
1 TAT-ATTGCACTATT-ATCCGATGATACAC-TATGTGT
63839186 TAGTATTGAT
Statistics
Matches: 131, Mismatches: 27, Indels: 15
0.76 0.16 0.09
Matches are distributed among these distances:
126 6 0.05
127 3 0.02
128 10 0.08
129 104 0.79
130 8 0.06
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (126 bp):
TATATTGCACTATTATCCGATGATACACTATGTGTGCCAGTATGTTACTTCGATATTATCCAATA
ATGCACTATGCATGCCAATATGTTGCTTCAGTATTATCCGATGATACACTGTGTATGCCAG
Found at i:63845804 original size:19 final size:19
Alignment explanation
Indices: 63845780--63845817 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
63845770 TAGGCCTCGA
63845780 TGGGCCGAAATGGGC-CGTG
1 TGGGCC-AAATGGGCTCGTG
*
63845799 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
63845818 GGCCCCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.13, C:0.24, G:0.45, T:0.18
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:63846241 original size:47 final size:47
Alignment explanation
Indices: 63846172--63846266 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
63846162 ATATTGAGTA
63846172 TGATTTTGGATACACGCAATATTAATGACATGACATACTGCATGGAG
1 TGATTTTGGATACACGCAATATTAATGACATGACATACTGCATGGAG
63846219 TGATTTTGGATACACGCAATATTAATGACATGACATACTGCATGGAG
1 TGATTTTGGATACACGCAATATTAATGACATGACATACTGCATGGAG
63846266 T
1 T
63846267 TGGGTTATTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.31
Consensus pattern (47 bp):
TGATTTTGGATACACGCAATATTAATGACATGACATACTGCATGGAG
Found at i:63849313 original size:6 final size:6
Alignment explanation
Indices: 63849295--63849407 Score: 56
Period size: 6 Copynumber: 18.3 Consensus size: 6
63849285 AAGAAACATT
* * *
63849295 ATCAGA A-CTAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA
* * * *
63849344 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAAA ATCAGT ATCAGGTA AT-AGA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
63849394 ATCA-A AGTCAGA AT
1 ATCAGA A-TCAGA AT
63849408 GTGAATGCAA
Statistics
Matches: 82, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
5 9 0.11
6 60 0.73
7 9 0.11
8 4 0.05
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:63849339 original size:31 final size:31
Alignment explanation
Indices: 63849304--63849407 Score: 111
Period size: 31 Copynumber: 3.4 Consensus size: 31
63849294 TATCAGAACT
* *
63849304 AGAATCAGAATCAGAATTAGGTGACAAAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATC
* *
63849335 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATC
* * * * *
63849366 AAAATCAAAATCAGTATCAGGTAATAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAAAATC
63849397 A-AAGTCAGAAT
1 AGAA-TCAGAAT
63849408 GTGAATGCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
30 2 0.03
31 62 0.97
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAAAATC
Found at i:63849841 original size:27 final size:27
Alignment explanation
Indices: 63849811--63850100 Score: 210
Period size: 27 Copynumber: 10.2 Consensus size: 27
63849801 GGTAAAATGG
* * *
63849811 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
63849838 TAATTCTACCTTAC-AGGAGTATTTC-A
1 TAATTCTACCCTACAAGG-GTATTTCGA
* *
63849864 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAAGGGTATTTCGA
*
63849892 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
63849919 TAATTCTACCCTA-ATGGGTATTT-TA
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
63849944 GTAATTCTATCCTACAGGGGTATTTCGGTA
1 -TAATTCTACCCTACAAGGGTATTTC-G-A
*
63849974 TTTCGATATTTCTACCCTACAGGGGTATTTCGGTA
1 --T--A-A-TTCTACCCTACAAGGGTATTTC-G-A
* *
63850009 TTTCAGTATTTCTACCCTACAGGGGTATTTCGG
1 --T-A--A-TTCTACCCTACAAGGGTATTTCGA
* *
63850042 TATTTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
63850069 TATTTCTACCCTACAAAGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
63850096 TAATT
1 TAATT
63850101 TAGTAAATCG
Statistics
Matches: 220, Mismatches: 28, Indels: 30
0.79 0.10 0.11
Matches are distributed among these distances:
25 1 0.00
26 25 0.11
27 131 0.60
28 2 0.01
30 2 0.01
31 2 0.01
33 1 0.00
34 3 0.01
35 53 0.24
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:63849966 original size:80 final size:81
Alignment explanation
Indices: 63849813--63849977 Score: 255
Period size: 80 Copynumber: 2.1 Consensus size: 81
63849803 TAAAATGGTA
*
63849813 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCTTACAGGAGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCT
63849877 ACAGGGGTATTTCGGT
66 ACAGGGGTATTTCGGT
* * * *
63849893 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTA-ATGG-GTATTTTAGTAATTCTATCC
1 ATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTACA-GGAGTATTTCAGTAATTCTACCC
63849956 TACAGGGGTATTTCGGT
65 TACAGGGGTATTTCGGT
63849973 ATTTC
1 ATTTC
63849978 GATATTTCTA
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
80 45 0.58
81 33 0.42
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (81 bp):
ATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTACAGGAGTATTTCAGTAATTCTACCCT
ACAGGGGTATTTCGGT
Found at i:63849987 original size:35 final size:35
Alignment explanation
Indices: 63849935--63850047 Score: 183
Period size: 35 Copynumber: 3.2 Consensus size: 35
63849925 TACCCTAATG
* * *
63849935 GGTATTTTAGTAATTCTATCCTACAGGGGTATTTC
1 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
63849970 GGTATTTC-GATATTTCTACCCTACAGGGGTATTTC
1 GGTATTTCAG-TATTTCTACCCTACAGGGGTATTTC
63850005 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
1 GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
63850040 GGTATTTC
1 GGTATTTC
63850048 TACCCTACAA
Statistics
Matches: 73, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
34 1 0.01
35 71 0.97
36 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (35 bp):
GGTATTTCAGTATTTCTACCCTACAGGGGTATTTC
Found at i:63850116 original size:27 final size:25
Alignment explanation
Indices: 63850086--63850346 Score: 103
Period size: 27 Copynumber: 9.7 Consensus size: 25
63850076 ACCCTACAAA
63850086 GGTATTTCGGTAATTTAGTAAATCGAG
1 GGTATTTCGGTAATTT--TAAATCGAG
*** *
63850113 GGTAAAACGGTAATTCTGTAAATCAAG
1 GGTATTTCGGTAATT-T-TAAATCGAG
*
63850140 GGTACTTT-GGTAATTTTACAAGTCTAG
1 GGTA-TTTCGGTAATTTTA-AA-TCGAG
** *
63850167 GGTATTTCAATAATTTTACAGGTCGAG
1 GGTATTTCGGTAATTTTA-A-ATCGAG
* *
63850194 GGTATTTCAGTAATTTCACAAATC-AGG
1 GGTATTTCGGTAATTT--TAAATCGA-G
* * *
63850221 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTTTA-AATCGA-G
* * * *
63850248 GGTATTTTGATAATTTTACAAACCAGG
1 GGTATTTCGGTAATTTTA-AATCGA-G
* * *
63850275 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTCGGTAATTTT--AAATCGAG
* * *
63850302 GGTATTTTGGTAATTTTATAAACCAGG
1 GGTATTTCGGTAATTTTA-AATCGA-G
* *
63850329 GGTATTTTGGTGATTTTA
1 GGTATTTCGGTAATTTTA
63850347 TAAACCAAGG
Statistics
Matches: 192, Mismatches: 27, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
25 4 0.02
26 14 0.07
27 166 0.86
28 6 0.03
29 2 0.01
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.38
Consensus pattern (25 bp):
GGTATTTCGGTAATTTTAAATCGAG
Found at i:63850193 original size:81 final size:81
Alignment explanation
Indices: 63850108--63850335 Score: 192
Period size: 81 Copynumber: 2.8 Consensus size: 81
63850098 ATTTAGTAAA
* ** *
63850108 TCGAGGGTAAAACGGTAA-TTCTGTAAATCAAGGGTACTTTGGTAATTTTACAAGTCTA-GGGTA
1 TCGAGGGTAAAACAGTAATTTC-ACAAATCAAGGGTACTTTGGTAATTTTACAA-ACTAGGGGTA
63850171 TTTCAATAATTTTACAGG
64 TTTCAATAATTTTACAGG
*** * *
63850189 TCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATT
1 TCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGGTAATTTTACAAACTAGGGGTATT
** *
63850254 TTGATAATTTTACA-A
66 TCAATAATTTTACAGG
* * ***** * * * * *
63850269 ACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAGGGGTAT
1 TCGA-GGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGGTAATTTTACAAACTAGGGGTAT
63850334 TT
65 TT
63850336 TGGTGATTTT
Statistics
Matches: 123, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
80 5 0.04
81 115 0.93
82 3 0.02
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (81 bp):
TCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGGTAATTTTACAAACTAGGGGTATT
TCAATAATTTTACAGG
Found at i:63850336 original size:81 final size:80
Alignment explanation
Indices: 63850136--63850398 Score: 287
Period size: 81 Copynumber: 3.2 Consensus size: 80
63850126 TTCTGTAAAT
* * ** ***
63850136 CAAGGGTACTTTGGTAATTTTACAAGTCTA-GGGTATTTCAATAATTTTACAGGTC-GAGGGTAT
1 CAAGGGTATTTTGGTAATTTTACAA-ACTAGGGGTATTTTGATAATTTTACAAACCAG-GGGTAT
* *
63850199 TTCAGTAATTTCACAAA
64 TTTAGTAATTTTACAAA
*
63850216 TCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATT
1 -CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATT
*
63850281 TTGGTAATTTTACAAA
65 TTAGTAATTTTACAAA
* * * * * * *
63850297 CCAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTGATTTTATAAACCAAGGATATT
1 -CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATT
*
63850362 TTAGCAATTTTACAAA
65 TTAGTAATTTTACAAA
*
63850378 CTAGGGATATTTTGGTAATTT
1 CAAGGG-TATTTTGGTAATTT
63850399 GGTAAACTAA
Statistics
Matches: 156, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
80 8 0.05
81 147 0.94
82 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (80 bp):
CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTT
TAGTAATTTTACAAA
Found at i:63850407 original size:27 final size:27
Alignment explanation
Indices: 63850193--63850398 Score: 268
Period size: 27 Copynumber: 7.6 Consensus size: 27
63850183 TACAGGTCGA
** * *
63850193 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
63850220 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
63850247 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
63850274 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
63850301 GGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
63850328 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * *
63850355 GGATATTTTAGCAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
63850382 GGATATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
63850399 GGTAAACTAA
Statistics
Matches: 157, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 157 1.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:63852825 original size:26 final size:26
Alignment explanation
Indices: 63852796--63852848 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
63852786 CCAAACATGC
63852796 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* * *
63852822 ATTTCGGTACTTTATCTTCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
63852848 A
1 A
63852849 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:63854084 original size:24 final size:23
Alignment explanation
Indices: 63854051--63854154 Score: 109
Period size: 24 Copynumber: 4.3 Consensus size: 23
63854041 GCCAGCCAAC
*
63854051 TCCTGCTCCTTGATCAGCTTCTAAA
1 TCCT-CTCCTT-ATCAGCTCCTAAA
* * **
63854076 TCTTCTCCTTTATCAGATTGTAAA
1 TCCTCTCC-TTATCAGCTCCTAAA
63854100 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCT-CCTTATCAGCTCCTAAA
63854124 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCT-CCTTATCAGCTCCTAAA
*
63854148 TCTTCTC
1 TCCTCTC
63854155 TTGACAGCCT
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.01
24 61 0.88
25 7 0.10
ACGTcount: A:0.20, C:0.35, G:0.07, T:0.38
Consensus pattern (23 bp):
TCCTCTCCTTATCAGCTCCTAAA
Found at i:63854148 original size:48 final size:49
Alignment explanation
Indices: 63854058--63854154 Score: 124
Period size: 48 Copynumber: 2.0 Consensus size: 49
63854048 AACTCCTGCT
* * * **
63854058 CCTTGATCAGCTTCTAAATCTTCTCCTTTATCAGATTGTAAATCCTCTC
1 CCTTGATCAGCTCCTAAATCCTCTCCCTTATCAGATCCTAAATCCTCTC
* *
63854107 CCTT-ATCAGCTCCTAAATCCTCTCCCTTATCAGCTCCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCCTCTCCCTTATCAGATCCTAAATCCTCTC
63854155 TTGACAGCCT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
48 37 0.90
49 4 0.10
ACGTcount: A:0.22, C:0.34, G:0.06, T:0.38
Consensus pattern (49 bp):
CCTTGATCAGCTCCTAAATCCTCTCCCTTATCAGATCCTAAATCCTCTC
Found at i:63859976 original size:37 final size:37
Alignment explanation
Indices: 63859915--63859993 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
63859905 TTATTACGAA
* * *
63859915 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
*
63859952 GTCTTACCCAGACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCT-CCACACGAAGTCATCGG
63859989 GTCTT
1 GTCTT
63859994 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCACACGAAGTCATCGG
Found at i:63860257 original size:47 final size:47
Alignment explanation
Indices: 63860112--63860742 Score: 1048
Period size: 47 Copynumber: 13.4 Consensus size: 47
63860102 CCCTTCGGGA
* * * * * * *
63860112 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
63860159 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63860205 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63860252 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63860299 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63860346 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63860393 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63860440 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63860487 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63860534 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63860583 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63860630 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63860677 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63860724 CTTATCACATATATACACT
1 CTTATCACATATATACACT
63860743 GTCTTGGCTG
Statistics
Matches: 555, Mismatches: 26, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 39 0.07
47 470 0.85
49 46 0.08
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63870724 original size:26 final size:26
Alignment explanation
Indices: 63870688--63870749 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
63870678 AGTCATGTGA
63870688 ATGGGCCTATGTCGGCTAATGACGTT
1 ATGGGCCTATGTCGGCTAATGACGTT
*
63870714 ATGGGCCTATGTCGGCTAATGATGTT
1 ATGGGCCTATGTCGGCTAATGACGTT
63870740 ATGGGCCTAT
1 ATGGGCCTAT
63870750 ATGATTATTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.19, C:0.18, G:0.31, T:0.32
Consensus pattern (26 bp):
ATGGGCCTATGTCGGCTAATGACGTT
Found at i:63872592 original size:48 final size:48
Alignment explanation
Indices: 63872531--63872764 Score: 249
Period size: 48 Copynumber: 4.9 Consensus size: 48
63872521 ACTCAGGAGT
** * * *
63872531 CTCGCACATGAAGTGCCAATATCATGGCCCGAAGCCAACTCAAAATAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * * *
63872579 CGCGCACCCGAAGTGCTAATATCATGTCTCAAAGCC-AATCAAAGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAAAGTAA
** * * *
63872626 CTCGCACCCGAAGTGCTGGTATCATGGCCCGAAGTCAAATCAATGTAT
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAAAGTAA
* * * *
63872674 CTCACACCCGAAGTGCTAATATCATGGCCCAAATCCAAATC--TGTGAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAAAGT-AA
**
63872721 GCTCGCACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAA
1 -CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAA
63872765 TGTATCCCCT
Statistics
Matches: 151, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
46 3 0.02
47 39 0.26
48 109 0.72
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.19
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAAAGTAA
Found at i:63872694 original size:95 final size:96
Alignment explanation
Indices: 63872531--63872770 Score: 297
Period size: 95 Copynumber: 2.5 Consensus size: 96
63872521 ACTCAGGAGT
** * * ** * *
63872531 CTCGCACATGAAGTGCCAATATCATGGCCCGAAGCCAACTCAAAATAACGCGCACCCGAAGTGCT
1 CTCGCACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTATCGCACACCCGAAGTGCT
* *
63872596 AATATCATGTCTCAAAGCC-AATCAAAGT-AA-
66 AATATCATGGCCCAAAGCCAAATC--AGTGAAG
* * * *
63872626 CTCGCACCCGAAGTGCTGGTATCATGGCCCGAAGTCAAATCAATGTATCTCACACCCGAAGTGCT
1 CTCGCACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTATCGCACACCCGAAGTGCT
* *
63872691 AATATCATGGCCCAAATCCAAATCTGTGAAG
66 AATATCATGGCCCAAAGCCAAATCAGTGAAG
63872722 CTCGCACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTATC
1 CTCGCACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTATC
63872771 CCCTAATGAC
Statistics
Matches: 123, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
94 2 0.02
95 71 0.58
96 50 0.41
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.20
Consensus pattern (96 bp):
CTCGCACCCGAAGTGCCGATATCATGGCCCGAAGCCAAATCAATGTATCGCACACCCGAAGTGCT
AATATCATGGCCCAAAGCCAAATCAGTGAAG
Found at i:63878986 original size:16 final size:16
Alignment explanation
Indices: 63878967--63878998 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
63878957 AATTGTTTTA
63878967 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
63878983 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
63878999 ATTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:63879263 original size:50 final size:50
Alignment explanation
Indices: 63879209--63879591 Score: 376
Period size: 50 Copynumber: 7.6 Consensus size: 50
63879199 CTAGTATGCA
* * *
63879209 TAGTAGCCTGCACTTAGTACTACACATGCGACCTGTCAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * *
63879259 TAGTAGCCTGCACTTAGTACTATACATGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* ** * * ***
63879309 TAGTAGCCTGCACTTAGTACTACACAGGTGATCAAAGTTAA-CGGGTACGTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACG
* ** *
63879360 TAGTAGCCTGCACTAAGTACTACACATACGACCTACCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * * *
63879410 TAGTAGCTTGCACTTAGTACTACACACGTGACTTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * ** * * * *
63879460 TAGTAGCCTACA-TTAGTACTACACACGTGATCGAAGTTAA-CGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACG
*
63879510 TAGTAGCCTGCGCTTAGTACTACACATGTGACCTATCAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* *
63879560 TAGTAGCCTGCACTTAGTAATACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACATGTGAC
63879592 TCACAACGAA
Statistics
Matches: 262, Mismatches: 64, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
49 23 0.09
50 186 0.71
51 52 0.20
52 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
Found at i:63879402 original size:101 final size:101
Alignment explanation
Indices: 63879259--63879440 Score: 276
Period size: 101 Copynumber: 1.8 Consensus size: 101
63879249 CTAGTACACG
* * ** *
63879259 TAGTAGCCTGCACTTAGTACTATACATGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTAAGTACTACACATACGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
*
63879324 AGTACTACACAGGTGATCAAAGTTAACGGGTACGTA
66 AGTACTACACACGTGATCAAAGTTAACGGGTACGTA
* *
63879360 TAGTAGCCTGCACTAAGTACTACACATACGACCT-ACCAATCTGGTACACGTAGTAGCTTGCACT
1 TAGTAGCCTGCACTAAGTACTACACATACGACCTAACC-ATCTGATACACGTAGTAGCCTGCACT
63879424 TAGTACTACACACGTGA
65 TAGTACTACACACGTGA
63879441 CTTAACCATC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 3 0.04
101 69 0.96
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTAAGTACTACACATACGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCAAAGTTAACGGGTACGTA
Found at i:63879550 original size:150 final size:151
Alignment explanation
Indices: 63879206--63879592 Score: 632
Period size: 150 Copynumber: 2.6 Consensus size: 151
63879196 TCTCTAGTAT
* *
63879206 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTGTCAATCTAGTACACGTAGTAGCCTGCA
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCA
* * * *
63879271 CTTAGTACTATACATGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACAG
66 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACAC
63879336 GTGATCAAAGTTAACGGGTAC
131 GTGATCAAAGTTAACGGGTAC
* * * * *
63879357 GTATAGTAGCCTGCACTAAGTACTACACATACGACCTACCAATCTGGTACACGTAGTAGCTTGCA
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCA
63879422 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACA-TTAGTACTACACAC
66 CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACAC
*
63879486 GTGATCGAAGTTAACGGGTAC
131 GTGATCAAAGTTAACGGGTAC
* *
63879507 GCATAGTAGCCTGCGCTTAGTACTACACATGTGACCTATCAATCTGGTACACGTAGTAGCCTGCA
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCA
*
63879572 CTTAGTAATACACACGTGACT
66 CTTAGTACTACACACGTGACT
63879593 CACAACGAAT
Statistics
Matches: 216, Mismatches: 20, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
150 111 0.51
151 105 0.49
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (151 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCCTGCA
CTTAGTACTACACACGTGACTTAACCATCTGATACACGTAGTAGCCTACACTTAGTACTACACAC
GTGATCAAAGTTAACGGGTAC
Found at i:63879967 original size:19 final size:20
Alignment explanation
Indices: 63879939--63879985 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
63879929 AAGAACAGGT
63879939 TATATCATCAAAATAATCACA
1 TATAT-ATCAAAATAATCACA
* *
63879960 TA-ATATCAAATTACTCACA
1 TATATATCAAAATAATCACA
63879979 TATATAT
1 TATATAT
63879986 ACTTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (20 bp):
TATATATCAAAATAATCACA
Found at i:63884469 original size:25 final size:25
Alignment explanation
Indices: 63884440--63884487 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
63884430 TTATAACATG
* *
63884440 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
63884465 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
63884488 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Done.