Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 189 of 345
Found at i:63884590 original size:20 final size:20
Alignment explanation
Indices: 63884524--63884590 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
63884514 ATTTTGATAA
* *
63884524 ACATGGTATGTATGATACGC
1 ACATGATATGTATGATATGC
*
63884544 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
63884564 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
63884584 ACATGAT
1 ACATGAT
63884591 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:63884666 original size:24 final size:24
Alignment explanation
Indices: 63884640--63884809 Score: 261
Period size: 24 Copynumber: 7.0 Consensus size: 24
63884630 GAGGAAGTGC
*
63884640 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
63884664 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
63884688 AAAAAAGGGCTTATGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
63884714 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63884738 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63884762 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
63884786 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
63884810 ATGATAAAGC
Statistics
Matches: 136, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
24 101 0.74
25 11 0.08
26 24 0.18
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:63884718 original size:50 final size:50
Alignment explanation
Indices: 63884640--63884789 Score: 259
Period size: 50 Copynumber: 3.0 Consensus size: 50
63884630 GAGGAAGTGC
*
63884640 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAA
63884690 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT--
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAA
* *
63884738 AAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAA
63884788 AA
1 AA
63884790 GAGGCTAGGC
Statistics
Matches: 95, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
48 46 0.48
50 49 0.52
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAA
Found at i:63893829 original size:48 final size:48
Alignment explanation
Indices: 63893662--63893883 Score: 206
Period size: 48 Copynumber: 4.6 Consensus size: 48
63893652 CACTAAATGC
* ** **
63893662 CAATATCATGGCCCAAAGCCAACTCAAACTAACTCGTACCCGAAGTG-
1 CAATATCATGGCCCAAAGCCAAATCAATGTAACTCACACCCGAAGTGT
* * *
63893709 CTAATATCATGGCCTGAAA-CC-AATCAAAGTAACTCGCACCCGAAGTGT
1 C-AATATCATGGCC-CAAAGCCAAATCAATGTAACTCACACCCGAAGTGT
** * *
63893757 CGGTATCATGGCCCAAAGCGAAATCAATGTATA-TCATACCCGAAGTG-
1 CAATATCATGGCCCAAAGCCAAATCAATGTA-ACTCACACCCGAAGTGT
*
63893804 CTAATATCATGGCCCAAAGCCAAATC--TGTAAAGCTCACACCTGAAGTGT
1 C-AATATCATGGCCCAAAGCCAAATCAATGT-AA-CTCACACCCGAAGTGT
* *
63893853 CGATATCATGGCCCGAAGCCAAATCAATGTA
1 CAATATCATGGCCCAAAGCCAAATCAATGTA
63893884 TCCCCTAATG
Statistics
Matches: 144, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
46 7 0.05
47 37 0.26
48 91 0.63
49 6 0.04
50 3 0.02
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (48 bp):
CAATATCATGGCCCAAAGCCAAATCAATGTAACTCACACCCGAAGTGT
Found at i:63899819 original size:45 final size:45
Alignment explanation
Indices: 63899754--63899888 Score: 216
Period size: 45 Copynumber: 3.0 Consensus size: 45
63899744 ATCGTACGAC
*
63899754 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
*
63899799 ACTATTCGGGCCTTTAAGCCTAGCAGGCTATAATGCCGGTGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
*** *
63899844 ACTATTCAATCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
63899889 TTAATATCCT
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 83 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (45 bp):
ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT
Found at i:63901228 original size:46 final size:45
Alignment explanation
Indices: 63901178--63901353 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
63901168 TGGTTGAGCA
63901178 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
63901224 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
63901271 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
63901317 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
63901354 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:63901334 original size:93 final size:93
Alignment explanation
Indices: 63901175--63901345 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
63901165 GGATGGTTGA
* *
63901175 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63901240 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
63901268 GCATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
63901333 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
63901346 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:63908567 original size:43 final size:43
Alignment explanation
Indices: 63908477--63908639 Score: 136
Period size: 43 Copynumber: 3.8 Consensus size: 43
63908467 ATCAAGATGT
* * * *
63908477 GATTACATGTAATACCATGTTTGGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATATTTGGGACATTGGCATCGTAATGA
* * *
63908520 GATTACATATAAGACCGTATTTGGGACATTGGCATCGTTAAT-C
1 GATTACATGTAAGACCATATTTGGGACATTGGCATCG-TAATGA
* * * * *
63908563 GATTACATGTAAGATCC-TGTCTAGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGA-CCATATTTGGGACATTGGCATCGTA-ATGA
* * *
63908606 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATATTTGGGACATTGGCAT
63908640 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 1 0.01
42 10 0.10
43 82 0.84
44 5 0.05
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
GATTACATGTAAGACCATATTTGGGACATTGGCATCGTAATGA
Found at i:63909674 original size:13 final size:13
Alignment explanation
Indices: 63909658--63909682 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63909648 CGGTCATATT
63909658 ATACGGCCTAGAC
1 ATACGGCCTAGAC
63909671 ATACGGCCTAGA
1 ATACGGCCTAGA
63909683 TACACGGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.28, G:0.24, T:0.16
Consensus pattern (13 bp):
ATACGGCCTAGAC
Found at i:63910835 original size:20 final size:20
Alignment explanation
Indices: 63910806--63910851 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
63910796 ACTAGAACAT
*
63910806 AAGCATGATATAAATCATAC
1 AAGCACGATATAAATCATAC
63910826 AAGCACGATATAAATCATAC
1 AAGCACGATATAAATCATAC
63910846 AAGCAC
1 AAGCAC
63910852 ATGTATATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.50, C:0.20, G:0.11, T:0.20
Consensus pattern (20 bp):
AAGCACGATATAAATCATAC
Found at i:63911861 original size:20 final size:19
Alignment explanation
Indices: 63911815--63911861 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
63911805 GTAATTCATG
63911815 TTTAATTGCTGAATGGAGT
1 TTTAATTGCTGAATGGAGT
* *
63911834 TTTGAATTGGTAGAATTGAGT
1 TTT-AATTGCT-GAATGGAGT
63911855 TTTAATT
1 TTTAATT
63911862 TTAAGAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.28, C:0.02, G:0.23, T:0.47
Consensus pattern (19 bp):
TTTAATTGCTGAATGGAGT
Found at i:63915743 original size:24 final size:20
Alignment explanation
Indices: 63915716--63915766 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 20
63915706 TTTGTACCCA
63915716 AATTCAAGACATCAGAAACATACC
1 AATTCAAG-CAT--GAAACA-ACC
*
63915740 AATTCATGCATGAAACAACC
1 AATTCAAGCATGAAACAACC
63915760 AATTCAA
1 AATTCAA
63915767 TAGTCCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 9 0.36
21 6 0.24
23 3 0.12
24 7 0.28
ACGTcount: A:0.49, C:0.24, G:0.08, T:0.20
Consensus pattern (20 bp):
AATTCAAGCATGAAACAACC
Found at i:63920819 original size:14 final size:14
Alignment explanation
Indices: 63920761--63920819 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
63920751 ACCTAAACCG
*
63920761 ACCAATTCGTTCAT
1 ACCATTTCGTTCAT
*
63920775 ATCC-CTTCGTTCAT
1 A-CCATTTCGTTCAT
* *
63920789 ACCATTTCATTCCT
1 ACCATTTCGTTCAT
*
63920803 ACCATTTCGTTCGT
1 ACCATTTCGTTCAT
63920817 ACC
1 ACC
63920820 CCTCTTTCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
13 2 0.05
14 33 0.89
15 2 0.05
ACGTcount: A:0.20, C:0.34, G:0.07, T:0.39
Consensus pattern (14 bp):
ACCATTTCGTTCAT
Found at i:63924137 original size:75 final size:75
Alignment explanation
Indices: 63924024--63924386 Score: 372
Period size: 75 Copynumber: 4.8 Consensus size: 75
63924014 TATTTGTCAG
* * * *
63924024 TTTATCTGACTAGCGCTGGACACAACTCATTGTTGGTTTATTCGACTAGTGCAGGGCACACATTT
1 TTTATCTAACTAGCGTTGGGCA-AACTCATTGTCGGTTTATTCGACTAGTGCAGGGCACACATTT
63924089 GATATCGTCGA
65 GATATCGTCGA
* * *
63924100 TTTATCTAACTAGTGTTGGGCAAACTCATTGTCGGTTTATCCGACTAGTGCAGGGCACACATTGG
1 TTTATCTAACTAGCGTTGGGCAAACTCATTGTCGGTTTATTCGACTAGTGCAGGGCACACATTTG
* *
63924165 ATATTGTCAA
66 ATATCGTCGA
* * * * **
63924175 TTTATCTAACTAGTGTTGGGCAAACTCATTATCAGTTTATCCGACTAGTGGTGGGCACACATTTG
1 TTTATCTAACTAGCGTTGGGCAAACTCATTGTCGGTTTATTCGACTAGTGCAGGGCACACATTTG
*
63924240 ATATCTTC-A
66 ATATCGTCGA
* * * * * **
63924249 GTTTATCTGACTAGCACTTGGTGAAAAAT-ATTGTCGATTTATTCGACTAGTGGTGGGCACACAT
1 -TTTATCTAACTAGC-GTTGG-GCAAACTCATTGTCGGTTTATTCGACTAGTGCAGGGCACACAT
* * *
63924313 TTGATATCATTGG
63 TTGATATCGTCGA
* * ** *
63924326 TTTATCCAACTAGCGCTGGGCACAAAACATTGTCGGTTTA-TCTGACTAGTGCAGAGCACAC
1 TTTATCTAACTAGCGTTGGGCA-AACTCATTGTCGGTTTATTC-GACTAGTGCAGGGCACAC
63924387 CTATTATCGG
Statistics
Matches: 242, Mismatches: 38, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
74 3 0.01
75 134 0.55
76 100 0.41
77 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.33
Consensus pattern (75 bp):
TTTATCTAACTAGCGTTGGGCAAACTCATTGTCGGTTTATTCGACTAGTGCAGGGCACACATTTG
ATATCGTCGA
Found at i:63924147 original size:35 final size:36
Alignment explanation
Indices: 63924017--63924418 Score: 136
Period size: 40 Copynumber: 10.8 Consensus size: 36
63924007 ACGTATGTAT
* * *
63924017 TTGTCAGTTTATCTGACTAGCGCTGGACACAACTCA
1 TTGTCAGTTTATCCGACTAGTGCTGGGCACAACTCA
** * * * *
63924053 TTGTTGGTTTATTCGACTAGTGCAGGGCACACATTTGA
1 TTGTCAGTTTATCCGACTAGTGCTGGGCACA-A-CTCA
** *
63924091 TATCGTC-GATTTATCTAACTAGTGTTGGGCA-AACTCA
1 T-T-GTCAG-TTTATCCGACTAGTGCTGGGCACAACTCA
* * * *
63924128 TTGTCGGTTTATCCGACTAGTGCAGGGCACACATTGGATA
1 TTGTCAGTTTATCCGACTAGTGCTGGGCACA-ACT---CA
* ** *
63924168 TTGTCAATTTATCTAACTAGTGTTGGGCA-AACTCA
1 TTGTCAGTTTATCCGACTAGTGCTGGGCACAACTCA
* * * *
63924203 TTATCAGTTTATCCGACTAGTGGTGGGCACACATTTGA
1 TTGTCAGTTTATCCGACTAGTGCTGGGCACA-A-CTCA
* * ** * *
63924241 TATCTTCAGTTTATCTGACTAGCACTTGGTG-AAAAAT-A
1 T-T-GTCAGTTTATCCGACTAGTGC-TGG-GCACAACTCA
* * * *
63924279 TTGTC-GATTTATTCGACTAGTGGTGGGCACACATTTGA
1 TTGTCAG-TTTATCCGACTAGTGCTGGGCACA-A-CTCA
* * * **
63924317 -TATCATTGGTTTATCCAACTAGCGCTGGGCACAAAACA
1 TTGTCA---GTTTATCCGACTAGTGCTGGGCACAACTCA
* * * * *
63924355 TTGTCGGTTTATCTGACTAGTGCAGAGCACACCT-A
1 TTGTCAGTTTATCCGACTAGTGCTGGGCACAACTCA
* * *
63924390 TTATCGGTTTATCCGACTAGCGCTGGGCA
1 TTGTCAGTTTATCCGACTAGTGCTGGGCA
63924419 AAAAACTTTG
Statistics
Matches: 262, Mismatches: 76, Indels: 57
0.66 0.19 0.14
Matches are distributed among these distances:
34 1 0.00
35 77 0.29
36 62 0.24
37 12 0.05
38 13 0.05
39 10 0.04
40 80 0.31
41 6 0.02
42 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (36 bp):
TTGTCAGTTTATCCGACTAGTGCTGGGCACAACTCA
Found at i:63924261 original size:40 final size:39
Alignment explanation
Indices: 63924018--63924262 Score: 138
Period size: 40 Copynumber: 6.5 Consensus size: 39
63924008 CGTATGTATT
* ** *
63924018 TGTCAGTTTATCTGACTAGCGCT-GG-ACACAACTCAT-
1 TGTCAGTTTATCTGACTAGTGCTGGGCACACATTTGATA
** *
63924054 TGTTGGTTTAT-TCGACTAGTGCAGGGCACACATTTGATA
1 TGTCAGTTTATCT-GACTAGTGCTGGGCACACATTTGATA
* * * *
63924093 TCGTC-GATTTATCTAACTAGTGTTGGGCA-A-A-CTCAT-
1 T-GTCAG-TTTATCTGACTAGTGCTGGGCACACATTTGATA
* * * *
63924129 TGTCGGTTTATCCGACTAGTGCAGGGCACACATTGGATA
1 TGTCAGTTTATCTGACTAGTGCTGGGCACACATTTGATA
* * * * *
63924168 TTGTCAATTTATCTAACTAGTGTTGGGCA-A-A-CTCAT-
1 -TGTCAGTTTATCTGACTAGTGCTGGGCACACATTTGATA
* * *
63924204 TATCAGTTTATCCGACTAGTGGTGGGCACACATTTGATA
1 TGTCAGTTTATCTGACTAGTGCTGGGCACACATTTGATA
*
63924243 TCTTCAGTTTATCTGACTAG
1 T-GTCAGTTTATCTGACTAG
63924263 CACTTGGTGA
Statistics
Matches: 153, Mismatches: 38, Indels: 32
0.69 0.17 0.14
Matches are distributed among these distances:
35 45 0.29
36 21 0.14
37 9 0.06
38 15 0.10
39 5 0.03
40 57 0.37
41 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (39 bp):
TGTCAGTTTATCTGACTAGTGCTGGGCACACATTTGATA
Found at i:63924319 original size:151 final size:151
Alignment explanation
Indices: 63924017--63924386 Score: 377
Period size: 151 Copynumber: 2.5 Consensus size: 151
63924007 ACGTATGTAT
* * * ** *
63924017 TTGTCAGTTTATCTGACTAGCGCTGGACACAACTCATTGTTGGTTTATTCGACTAGTGCAGGGCA
1 TTGTCAATTTATCTAACTAGCGCTGGACACAACTCATTATCAGTTTATCCGACTAGTGCAGGGCA
** * * *
63924082 CACATTTGATATCGTCGATTTATCTAACTAGTGTTGGGCAAACTCATTGTCGGTTTATCCGACTA
66 CACATTTGATATCGTCGATTTATCTAACTAGACTTGGGAAAAATCATTGTCGATTTATCCGACTA
63924147 GTGCAGGGCACACATTGGATA
131 GTGCAGGGCACACATTGGATA
* * * **
63924168 TTGTCAATTTATCTAACTAGTGTTGGGCA-AACTCATTATCAGTTTATCCGACTAGTGGTGGGCA
1 TTGTCAATTTATCTAACTAGCGCTGGACACAACTCATTATCAGTTTATCCGACTAGTGCAGGGCA
* * *
63924232 CACATTTGATATCTTC-AGTTTATCTGACTAGCACTTGGTGAAAAAT-ATTGTCGATTTATTCGA
66 CACATTTGATATCGTCGA-TTTATCTAACTAG-ACTTGG-GAAAAATCATTGTCGATTTATCCGA
** *
63924295 CTAGTGGTGGGCACACATTTGATA
128 CTAGTGCAGGGCACACATTGGATA
** *** * * ** * * * *
63924319 TCATTGGTTTATCCAACTAGCGCTGGGCACAAAACATTGTCGGTTTATCTGACTAGTGCAGAGCA
1 TTGTCAATTTATCTAACTAGCGCTGGACACAACTCATTATCAGTTTATCCGACTAGTGCAGGGCA
63924384 CAC
66 CAC
63924387 CTATTATCGG
Statistics
Matches: 177, Mismatches: 38, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
149 1 0.01
150 56 0.32
151 85 0.48
152 35 0.20
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (151 bp):
TTGTCAATTTATCTAACTAGCGCTGGACACAACTCATTATCAGTTTATCCGACTAGTGCAGGGCA
CACATTTGATATCGTCGATTTATCTAACTAGACTTGGGAAAAATCATTGTCGATTTATCCGACTA
GTGCAGGGCACACATTGGATA
Found at i:63924374 original size:36 final size:36
Alignment explanation
Indices: 63924324--63924429 Score: 108
Period size: 35 Copynumber: 3.0 Consensus size: 36
63924314 TGATATCATT
*
63924324 GGTTTATCCAACTAGCGCTGGGCACAAAACATTGTC
1 GGTTTATCCGACTAGCGCTGGGCACAAAACATTGTC
* * * * * *
63924360 GGTTTATCTGACTAGTGCAGAGCAC--ACCTATTATC
1 GGTTTATCCGACTAGCGCTGGGCACAAAAC-ATTGTC
* *
63924395 GGTTTATCCGACTAGCGCTGGGCAAAAAACTTTGT
1 GGTTTATCCGACTAGCGCTGGGCACAAAACATTGT
63924430 TATGCTTTAT
Statistics
Matches: 52, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
34 2 0.04
35 25 0.48
36 23 0.44
37 2 0.04
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (36 bp):
GGTTTATCCGACTAGCGCTGGGCACAAAACATTGTC
Found at i:63924531 original size:24 final size:24
Alignment explanation
Indices: 63924504--63924549 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
63924494 GATCCATTGA
* *
63924504 AAAAGGTTGAAAATGATATAAATG
1 AAAAGGTTAAAAAGGATATAAATG
63924528 AAAAGGTTAAAAAGGATATAAA
1 AAAAGGTTAAAAAGGATATAAA
63924550 CAAAAATGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.20, T:0.22
Consensus pattern (24 bp):
AAAAGGTTAAAAAGGATATAAATG
Found at i:63924555 original size:24 final size:24
Alignment explanation
Indices: 63924503--63924560 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
63924493 TGATCCATTG
* * *
63924503 AAAAAGGTTGAAAATGATATAAAT
1 AAAAAGGTTAAAAAGGATATAAAC
*
63924527 GAAAAGGTTAAAAAGGATATAAAC
1 AAAAAGGTTAAAAAGGATATAAAC
*
63924551 AAAAATGTTA
1 AAAAAGGTTA
63924561 GTATCTCATC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.59, C:0.02, G:0.17, T:0.22
Consensus pattern (24 bp):
AAAAAGGTTAAAAAGGATATAAAC
Found at i:63926691 original size:43 final size:44
Alignment explanation
Indices: 63926601--63926714 Score: 105
Period size: 43 Copynumber: 2.7 Consensus size: 44
63926591 TAGCTCATAT
* * ** * *
63926601 AATGCC-ATATCCGAGA-TATGGTCTTACACATTACCACATATC
1 AATGCCAATGTCCCAGACTATGGTCTTACACAAAACCAAATAAC
* *
63926643 GATGCCAATAG-CCCAG-CTATGGTCTTACACAAAATCAAATAAC
1 AATGCCAAT-GTCCCAGACTATGGTCTTACACAAAACCAAATAAC
63926686 AATGCCAATGTCCCAGAC-ATGGT-TTACAC
1 AATGCCAATGTCCCAGACTATGGTCTTACAC
63926715 GTAATCACAT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
42 12 0.21
43 45 0.78
44 1 0.02
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (44 bp):
AATGCCAATGTCCCAGACTATGGTCTTACACAAAACCAAATAAC
Found at i:63926727 original size:42 final size:43
Alignment explanation
Indices: 63926617--63926727 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 43
63926607 ATATCCGAGA
** * * *
63926617 TATGGTCTTACACATTACCACATATCGATGCCAATAGCCCAGC
1 TATGGTCTTACACAAAATCACATAACAATGCCAATAGCCCAGC
*
63926660 TATGGTCTTACACAAAATCAAATAACAATGCCAAT-GTCCCAGAC
1 TATGGTCTTACACAAAATCACATAACAATGCCAATAG-CCCAG-C
**
63926704 -ATGGT-TTACACGTAATCACATAAC
1 TATGGTCTTACACAAAATCACATAAC
63926728 GATAATCCTA
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 17 0.30
43 39 0.68
44 1 0.02
ACGTcount: A:0.36, C:0.26, G:0.13, T:0.25
Consensus pattern (43 bp):
TATGGTCTTACACAAAATCACATAACAATGCCAATAGCCCAGC
Found at i:63929115 original size:37 final size:37
Alignment explanation
Indices: 63929042--63929120 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
63929032 TTATTACGAA
* * *
63929042 GTCTTACCCGGACATAATCTCCCCACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCTCCCCACGAAGTCATCGG
* *
63929079 GTCTTACCCAGACAAAATC-CCCACGCGTAGTCATCGG
1 GTCTTACCCAGACAAAATCTCCC-CACGAAGTCATCGG
63929116 GTCTT
1 GTCTT
63929121 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
36 3 0.08
37 33 0.92
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCTCCCCACGAAGTCATCGG
Found at i:63929317 original size:47 final size:47
Alignment explanation
Indices: 63929239--63929787 Score: 873
Period size: 47 Copynumber: 11.5 Consensus size: 47
63929229 CCCTTCGGGA
* * * * * *
63929239 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63929286 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63929333 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63929380 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATGAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63929427 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63929474 CTTATCACATATATACACTTTCGCATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63929521 CTTACCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63929568 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63929615 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63929664 CTTATCACATAAATATACAGTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63929713 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63929762 CTTATCACATATATATACACTTTCAC
1 CTTATCAC--ATATATACACTTTCAC
63929788 GTATACACAC
Statistics
Matches: 469, Mismatches: 27, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
47 316 0.67
49 151 0.32
51 2 0.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63933072 original size:20 final size:20
Alignment explanation
Indices: 63933047--63933087 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
63933037 CCATAAGATA
63933047 ATCCAAAATGTAGCAGTACC
1 ATCCAAAATGTAGCAGTACC
63933067 ATCCAAAATGTAGCAGTACC
1 ATCCAAAATGTAGCAGTACC
63933087 A
1 A
63933088 AACAATGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (20 bp):
ATCCAAAATGTAGCAGTACC
Found at i:63933667 original size:37 final size:37
Alignment explanation
Indices: 63933617--63933761 Score: 218
Period size: 37 Copynumber: 3.9 Consensus size: 37
63933607 ACCTTTAGCT
* ** * *
63933617 CGGACGAAATCTCCACACAAAGTTATCGGGTATTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
63933654 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
63933691 CGGGCAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
63933728 CGGACATACTCTCCACACGTAGTCATCGGGTCTT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTT
63933762 TAGAGCTCGG
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:63933958 original size:47 final size:47
Alignment explanation
Indices: 63933880--63934289 Score: 685
Period size: 47 Copynumber: 8.6 Consensus size: 47
63933870 CCCTTCGGGA
* * * * * *
63933880 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63933927 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63933974 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63934021 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
63934068 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63934115 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
63934162 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63934211 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
63934258 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
63934290 TCAAATATAC
Statistics
Matches: 343, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 276 0.80
49 67 0.20
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:63936609 original size:85 final size:85
Alignment explanation
Indices: 63936480--63936658 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
63936470 TATTTTATTG
*
63936480 CCCATGCACTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
63936545 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63936565 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
63936630 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
63936650 CCCATGCTC
1 CCCATGCTC
63936659 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:63943157 original size:3 final size:3
Alignment explanation
Indices: 63943149--63943281 Score: 51
Period size: 3 Copynumber: 44.3 Consensus size: 3
63943139 CAAGGGAAAT
* * *
63943149 ATA ATA ATA ATA ATA GTA A-A A-A CACA ATA GTA ATA ATA ATGA A-A
1 ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA AT-A ATA
* * * * * * * *
63943193 AGGT- ATT ATA AT- ATA ATA GTA ATA ATG ATG ATA ATA GTG GTA TTA
1 A--TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
63943238 GTA ATA ATA ATA ATA ATA ATAA ATA ATA ACA ATA TTA AAA ATA A
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA A
63943282 CACTCTCTCC
Statistics
Matches: 99, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
2 8 0.08
3 84 0.85
4 7 0.07
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:63943216 original size:33 final size:38
Alignment explanation
Indices: 63943174--63943259 Score: 110
Period size: 33 Copynumber: 2.4 Consensus size: 38
63943164 GTAAAAACAC
63943174 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
63943207 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
63943246 AATAATAATAATAA
1 AATAGTAATAATAA
63943260 ATAATAACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
33 16 0.36
34 2 0.05
35 1 0.02
37 7 0.16
38 4 0.09
39 14 0.32
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:63943681 original size:22 final size:22
Alignment explanation
Indices: 63943651--63943702 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
63943641 TTTGTAGGCA
* *
63943651 AGTGAAGTGGTTGGGGTGGTTT
1 AGTGGAGTGGTTGGAGTGGTTT
63943673 AGTGGAGTGGTTGGAGTGGTTT
1 AGTGGAGTGGTTGGAGTGGTTT
63943695 AGTGGAGT
1 AGTGGAGT
63943703 AAAGATATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (22 bp):
AGTGGAGTGGTTGGAGTGGTTT
Found at i:63947900 original size:6 final size:6
Alignment explanation
Indices: 63947870--63947966 Score: 65
Period size: 6 Copynumber: 15.8 Consensus size: 6
63947860 AAGAAACATT
* * * *
63947870 ATCAGA A-CTAGA ATCAAA ATTAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
63947919 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
63947967 GTAACAGAAT
Statistics
Matches: 70, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
5 4 0.06
6 58 0.83
7 6 0.09
8 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.18, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:63947915 original size:31 final size:31
Alignment explanation
Indices: 63947854--63947981 Score: 161
Period size: 31 Copynumber: 4.2 Consensus size: 31
63947844 TAACCCATTA
* * *
63947854 CAAAATAAGAAACATTATCA-G-AACTAGAAT
1 CAAAATCAGAATCAGTATCAGGTAAC-AGAAT
* * * *
63947884 CAAAATTAGAATCAGAATTAGGTGACAGAAT
1 CAAAATCAGAATCAGTATCAGGTAACAGAAT
*
63947915 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAAAATCAGAATCAGTATCAGGTAACAGAAT
63947946 CAAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAAAATCAGAATCAGTATCAGGTAACAGAAT
63947977 CAAAA
1 CAAAA
63947982 ATTAGAATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
30 15 0.18
31 67 0.80
32 2 0.02
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.20
Consensus pattern (31 bp):
CAAAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:63947945 original size:19 final size:19
Alignment explanation
Indices: 63947921--63947978 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
63947911 GAATCAGAAT
63947921 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
63947940 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
63947952 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
63947971 CAGAATCA
1 CAGAATCA
63947979 AAAATTAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:63948168 original size:27 final size:26
Alignment explanation
Indices: 63948126--63948227 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
63948116 GCTAAGTTAT
* * *
63948126 CAGATACTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
63948153 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
63948179 TAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
63948207 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
63948228 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.09
27 52 0.80
28 7 0.11
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:63948414 original size:22 final size:21
Alignment explanation
Indices: 63948386--63948450 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
63948376 GCAAATACGT
63948386 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
63948408 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
63948430 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
63948451 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:63948978 original size:27 final size:27
Alignment explanation
Indices: 63948940--63949260 Score: 509
Period size: 27 Copynumber: 11.9 Consensus size: 27
63948930 AGTGTTTTAG
*
63948940 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
63948967 TAATTCTACCCTACAGGGGTATTGCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
63948994 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
63949021 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* *
63949048 TAATTCTACCCTATAGGGGTATTGCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
63949075 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
*
63949102 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGA
* * *
63949129 TAATTCTACCCTATAGAGGTATTGCGA
1 TAATTCTACCCTACAGGGGTATTTCGA
*
63949156 TAATTCTACCCTATAGGGGTATTTC-A
1 TAATTCTACCCTACAGGGGTATTTCGA
*
63949182 GTAATTCTACCCTACAGGGGTATTTCGG
1 -TAATTCTACCCTACAGGGGTATTTCGA
*
63949210 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGA
63949237 TAATTCTACCCTACAGGGGTATTT
1 TAATTCTACCCTACAGGGGTATTT
63949261 TGGTAATTTT
Statistics
Matches: 272, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
26 1 0.00
27 271 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGA
Found at i:63949314 original size:81 final size:81
Alignment explanation
Indices: 63948939--63949268 Score: 561
Period size: 81 Copynumber: 4.1 Consensus size: 81
63948929 TAGTGTTTTA
** *
63948939 GTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAGGGGTATTGCGATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACC
63949004 CTACAGGGGTATTTCG
66 CTACAGGGGTATTTCG
*
63949020 ATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACC
63949085 CTACAGGGGTATTTCG
66 CTACAGGGGTATTTCG
*
63949101 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGAGGTATTGCGATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACC
* *
63949166 CTATAGGGGTATTTCA
66 CTACAGGGGTATTTCG
* * *
63949182 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACC
1 GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACC
*
63949247 CTACAGGGGTATTTTG
66 CTACAGGGGTATTTCG
63949263 GTAATT
1 GTAATT
63949269 TTACAAACTA
Statistics
Matches: 234, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 234 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (81 bp):
GTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACC
CTACAGGGGTATTTCG
Found at i:63949337 original size:27 final size:27
Alignment explanation
Indices: 63948934--63949349 Score: 412
Period size: 27 Copynumber: 15.4 Consensus size: 27
63948924 TATTTTAGTG
63948934 TTTTAGTAATTCTACCCTACAGGGGTA
1 TTTTAGTAATTCTACCCTACAGGGGTA
* *
63948961 TTTCAATAATTCTACCCTACAGGGGTA
1 TTTTAGTAATTCTACCCTACAGGGGTA
**
63948988 -TTGCGATAATTCTACCCTACAGGGGTA
1 TTTTAG-TAATTCTACCCTACAGGGGTA
*
63949015 -TTTCGATAATTCTACCCTACAGGGGTA
1 TTTTAG-TAATTCTACCCTACAGGGGTA
** *
63949042 TTTCGGTAATTCTACCCTATAGGGGTA
1 TTTTAGTAATTCTACCCTACAGGGGTA
**
63949069 -TTGCGATAATTCTACCCTACAGGGGTA
1 TTTTAG-TAATTCTACCCTACAGGGGTA
**
63949096 TTTCGGTAATTCTACCCTACAGGGGTA
1 TTTTAGTAATTCTACCCTACAGGGGTA
** * *
63949123 TTTCGGTAATTCTACCCTATAGAGGTA
1 TTTTAGTAATTCTACCCTACAGGGGTA
** *
63949150 -TTGCGATAATTCTACCCTATAGGGGTA
1 TTTTAG-TAATTCTACCCTACAGGGGTA
*
63949177 TTTCAGTAATTCTACCCTACAGGGGTA
1 TTTTAGTAATTCTACCCTACAGGGGTA
**
63949204 TTTCGGTAATTCTACCCTACAGGGGTA
1 TTTTAGTAATTCTACCCTACAGGGGTA
* *
63949231 TTTCAATAATTCTACCCTACAGGGGTA
1 TTTTAGTAATTCTACCCTACAGGGGTA
* * ** *
63949258 TTTTGGTAATTTTA-CAAACTAGAGGTA
1 TTTTAGTAATTCTACCCTAC-AGGGGTA
* * **
63949285 TTTTGGTAATTTTA-CAAACTAGGGGTA
1 TTTTAGTAATTCTACCCTAC-AGGGGTA
* * *
63949312 TTTTAGTTATTCTATCCTACAAGGGTA
1 TTTTAGTAATTCTACCCTACAGGGGTA
63949339 TTTTAGTAATT
1 TTTTAGTAATT
63949350 TCACAATCGA
Statistics
Matches: 341, Mismatches: 40, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
26 11 0.03
27 318 0.93
28 12 0.04
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
TTTTAGTAATTCTACCCTACAGGGGTA
Found at i:63949393 original size:27 final size:26
Alignment explanation
Indices: 63949358--63949455 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 26
63949348 TTTCACAATC
* *
63949358 GAGGATAAAACGGTAATTTTGTAAACT
1 GAGGGTAAAATGGTAATTTTGTAAA-T
63949385 GAGGGTAAAATGGTAATTTTGTAAATT
1 GAGGGTAAAATGGTAATTTTGTAAA-T
* * *
63949412 GAGGGTAAAATAGTAATTCTATAAAT
1 GAGGGTAAAATGGTAATTTTGTAAAT
63949438 CGAGGGTAAAAT-GTAATT
1 -GAGGGTAAAATGGTAATT
63949456 CTATAATTCT
Statistics
Matches: 64, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.11
27 57 0.89
ACGTcount: A:0.41, C:0.04, G:0.23, T:0.32
Consensus pattern (26 bp):
GAGGGTAAAATGGTAATTTTGTAAAT
Found at i:63949490 original size:27 final size:26
Alignment explanation
Indices: 63949459--63949544 Score: 84
Period size: 27 Copynumber: 3.2 Consensus size: 26
63949449 TGTAATTCTA
63949459 TAATTCTACCCTATAGGGGTATTCTGG
1 TAATTCTACCCTATAGGGGTATT-TGG
* *
63949486 TAATTCTACCCTACAGGAGTATTTCGG
1 TAATTCTACCCTATAGGGGTATTT-GG
* **
63949513 TAATTTTA-CAAACTAGGGGTATTTTGG
1 TAATTCTACCCTA-TAGGGGTA-TTTGG
63949540 TAATT
1 TAATT
63949545 TTATAAACCA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
26 3 0.06
27 43 0.88
28 3 0.06
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (26 bp):
TAATTCTACCCTATAGGGGTATTTGG
Found at i:63949545 original size:27 final size:27
Alignment explanation
Indices: 63949473--63949626 Score: 175
Period size: 27 Copynumber: 5.7 Consensus size: 27
63949463 TCTACCCTAT
* * **
63949473 AGGGGTATTCTGGTAATTCTACCCTA-C
1 AGGGGTATTTTGGTAATTTTA-CAAACC
* * *
63949500 AGGAGTATTTCGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
*
63949527 AGGGGTATTTTGGTAATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
63949554 AGGGGTATTTTGGTAATTTTATAAACA
1 AGGGGTATTTTGGTAATTTTACAAACC
* * *
63949581 AAGGGTATTTTAGTAATTTTTCAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
63949608 AGGGGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTT
63949627 GGTAAACTAA
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
26 2 0.02
27 105 0.98
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:63949633 original size:27 final size:27
Alignment explanation
Indices: 63949499--63949626 Score: 177
Period size: 27 Copynumber: 4.7 Consensus size: 27
63949489 TTCTACCCTA
* * *
63949499 CAGGAGTATTTCGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
*
63949526 TAGGGGTATTTTGGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
63949553 CAGGGGTATTTTGGTAATTTTATAAAC
1 CAGGGGTATTTTGGTAATTTTATAAAC
* * *
63949580 AAAGGGTATTTTAGTAATTTT-TCAAAC
1 CAGGGGTATTTTGGTAATTTTAT-AAAC
63949607 CAGGGGTATTTTGGTAATTT
1 CAGGGGTATTTTGGTAATTT
63949627 GGTAAACTAA
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 88 0.99
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTATAAAC
Found at i:63951593 original size:6 final size:6
Alignment explanation
Indices: 63951569--63951688 Score: 68
Period size: 6 Copynumber: 19.3 Consensus size: 6
63951559 AAGAAACCTT
* * *
63951569 ATCAGA A-CTAGA GTCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
63951618 ACCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
63951669 A-CAGA ATCAAAA ATCAGA AT
1 ATCAGA ATC-AGA ATCAGA AT
63951689 GTGAATGTAA
Statistics
Matches: 86, Mismatches: 16, Indels: 24
0.68 0.13 0.19
Matches are distributed among these distances:
5 6 0.07
6 63 0.73
7 14 0.16
8 3 0.03
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:63951624 original size:31 final size:31
Alignment explanation
Indices: 63951582--63951688 Score: 151
Period size: 31 Copynumber: 3.4 Consensus size: 31
63951572 AGAACTAGAG
* * *
63951582 TCAGAATCAGAATCAGAATTAGGTGACAGAA
1 TCAGAATCAGAATCAGTATCAGGTAACAGAA
*
63951613 TCAGAACCAGAATCAGTATCAGGTAACAGAA
1 TCAGAATCAGAATCAGTATCAGGTAACAGAA
*
63951644 TCAAAATCAGAATCAGTATCAGGTAACAGAA
1 TCAGAATCAGAATCAGTATCAGGTAACAGAA
*
63951675 TCAAAAATCAGAAT
1 TC-AGAATCAGAAT
63951689 GTGAATGTAA
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
31 58 0.84
32 11 0.16
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.19
Consensus pattern (31 bp):
TCAGAATCAGAATCAGTATCAGGTAACAGAA
Found at i:63951644 original size:19 final size:19
Alignment explanation
Indices: 63951620--63951677 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
63951610 GAATCAGAAC
63951620 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
*
63951639 CAGAATCA--A--A---AT
1 CAGAATCAGTATCAGGTAA
63951651 CAGAATCAGTATCAGGTAA
1 CAGAATCAGTATCAGGTAA
63951670 CAGAATCA
1 CAGAATCA
63951678 AAAATCAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 9 0.30
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 17 0.57
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (19 bp):
CAGAATCAGTATCAGGTAA
Found at i:63951867 original size:27 final size:26
Alignment explanation
Indices: 63951825--63951926 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
63951815 GCTCAGTTAT
* *
63951825 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
63951852 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
63951878 CAGATAATTGTGGCATAGCCACCAGAAA
1 CAGAT-ATTGTGGCAGAGCCACCAG-AA
* *
63951906 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
63951927 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 6 0.09
27 55 0.81
28 7 0.10
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:63952119 original size:22 final size:22
Alignment explanation
Indices: 63952087--63952149 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
63952077 AAATACGTTC
*
63952087 GGCACACAGCCATAATCAGGTT
1 GGCACAAAGCCATAATCAGGTT
* *
63952109 GGCACAGAGCCAT-ATGTAGGTT
1 GGCACAAAGCCATAAT-CAGGTT
*
63952131 GACACAAAGCCATAATCAG
1 GGCACAAAGCCATAATCAG
63952150 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (22 bp):
GGCACAAAGCCATAATCAGGTT
Found at i:63953872 original size:63 final size:65
Alignment explanation
Indices: 63953795--63953973 Score: 197
Period size: 63 Copynumber: 2.8 Consensus size: 65
63953785 CATTATGATA
* * * *
63953795 TAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGA-AAGAGAGCTACGGGATATA-TG
1 TAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAAACTG
* * * *
63953858 TAGCTAGGTCGCATGCGTGGTTCCAAGTAAAGGACACCATGTAGACAAGAGAGCTACGAGATAAA
1 TAGCTAGGTCGCATGGGTGGTACTAAGT---GTACACCATGTAGACAAGAGAGCTACGAGATAAA
63953923 CTG
63 CTG
* *
63953926 --GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAG
1 TAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAG
63953974 TCGAACTATA
Statistics
Matches: 96, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 41 0.43
66 35 0.36
67 17 0.18
68 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.23
Consensus pattern (65 bp):
TAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAAACTG
Found at i:63956388 original size:27 final size:27
Alignment explanation
Indices: 63956064--63956390 Score: 412
Period size: 27 Copynumber: 12.3 Consensus size: 27
63956054 GGGGCAAAAT
* * * *
63956064 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63956090 -GTAATTCCACCCTACA-GGGTATTT-
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63956114 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
63956141 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63956168 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63956195 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63956222 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63956249 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63956276 GGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63956303 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
63956330 GGTAATTTTA-CAAACTAGGGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* *
63956357 GGTAATTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
63956384 AGTAATT
1 GGTAATT
63956391 TCACAATCGA
Statistics
Matches: 264, Mismatches: 32, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
25 34 0.13
26 11 0.04
27 216 0.82
28 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:63956450 original size:27 final size:26
Alignment explanation
Indices: 63956412--63956497 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 26
63956402 GGTAGAACGA
*
63956412 TAATTTTGTAAACTAAGAGTAAAATGG
1 TAATTTTGTAAACTATG-GTAAAATGG
*
63956439 TAATTTTGTAAATTGATGGTAAAATGG
1 TAATTTTGTAAACT-ATGGTAAAATGG
*
63956466 TAATTTTGTAAATCGATGGTAAAATGG
1 TAATTTTGTAAA-CTATGGTAAAATGG
63956493 TAATT
1 TAATT
63956498 CTATAATTCT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
27 51 0.96
28 2 0.04
ACGTcount: A:0.40, C:0.02, G:0.20, T:0.38
Consensus pattern (26 bp):
TAATTTTGTAAACTATGGTAAAATGG
Found at i:63956521 original size:27 final size:28
Alignment explanation
Indices: 63956491--63956548 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
63956481 ATGGTAAAAT
*
63956491 GGTAATT-CTATAATTCTACCCTACAGG
1 GGTAATTCCGATAATTCTACCCTACAGG
* *
63956518 GGT-ATTCCGGTAATTCTACCCTATAGG
1 GGTAATTCCGATAATTCTACCCTACAGG
63956545 GGTA
1 GGTA
63956549 TTTTGATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 3 0.12
27 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (28 bp):
GGTAATTCCGATAATTCTACCCTACAGG
Found at i:63956558 original size:27 final size:27
Alignment explanation
Indices: 63956500--63956586 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
63956490 TGGTAATTCT
* **
63956500 ATAATTCTACCCTACAGGGGTATTCCG
1 ATAATTCTACCCTATAGGGGTATTTTG
*
63956527 GTAATTCTACCCTATAGGGGTATTTTG
1 ATAATTCTACCCTATAGGGGTATTTTG
* **
63956554 ATAATTTTA-CAAATAAGGGGTATTTTG
1 ATAATTCTACCCTAT-AGGGGTATTTTG
*
63956581 GTAATT
1 ATAATT
63956587 TTATAAACCA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 3 0.06
27 47 0.94
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.38
Consensus pattern (27 bp):
ATAATTCTACCCTATAGGGGTATTTTG
Found at i:63956587 original size:27 final size:27
Alignment explanation
Indices: 63956542--63956667 Score: 166
Period size: 27 Copynumber: 4.7 Consensus size: 27
63956532 TCTACCCTAT
* *
63956542 AGGGGTATTTTGATAATTTTACAAATA
1 AGGGGTATTTTGGTAATTTTACAAACA
* *
63956569 AGGGGTATTTTGGTAATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACA
*
63956596 AGGGGTATTTTGGTAATTTTATAAACA
1 AGGGGTATTTTGGTAATTTTACAAACA
* *
63956623 AAGGATATTTT-GTAATTTTACAAACCA
1 AGGGGTATTTTGGTAATTTTACAAA-CA
63956650 A-GGGTATTTTGGTAATTT
1 AGGGGTATTTTGGTAATTT
63956668 GGTAAACTAA
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 20 0.23
27 68 0.77
ACGTcount: A:0.33, C:0.06, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACA
Found at i:63956661 original size:53 final size:54
Alignment explanation
Indices: 63956544--63956667 Score: 178
Period size: 53 Copynumber: 2.3 Consensus size: 54
63956534 TACCCTATAG
* * * * * *
63956544 GGGTATTTTGATAATTTTACAAATAAGGGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTACAAACAAAGGATATTTTGGTAATTTTACAAACCAA
*
63956598 GGGTATTTTGGTAATTTTATAAACAAAGGATATTTT-GTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACAAAGGATATTTTGGTAATTTTACAAACCAA
63956651 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
63956668 GGTAAACTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
53 32 0.51
54 31 0.49
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACAAAGGATATTTTGGTAATTTTACAAACCAA
Found at i:63956682 original size:26 final size:26
Alignment explanation
Indices: 63956573--63956683 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
63956563 CAAATAAGGG
**
63956573 GTATTTTGGTAATTTTATAAACCAGGG
1 GTATTTTGGTAATTTTATAAACCA-AA
63956600 GTATTTTGGTAATTTTATAAA-CAAA
1 GTATTTTGGTAATTTTATAAACCAAA
* *
63956625 GGATATTTT-GTAATTTTACAAACCAAGG
1 -G-TATTTTGGTAATTTTATAAACCAA-A
** *
63956653 GTATTTTGGTAATTTGGTAAACTAAA
1 GTATTTTGGTAATTTTATAAACCAAA
63956679 GTATT
1 GTATT
63956684 CTAAACAGGG
Statistics
Matches: 70, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
26 26 0.37
27 44 0.63
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.41
Consensus pattern (26 bp):
GTATTTTGGTAATTTTATAAACCAAA
Found at i:63958166 original size:45 final size:45
Alignment explanation
Indices: 63958102--63958279 Score: 188
Period size: 45 Copynumber: 4.0 Consensus size: 45
63958092 TAGGATTCCA
63958102 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
** * *
63958147 ATATGTGTTTTCGTGTAAGACCACATCTGGGATGTTGGCATTGAT
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
* * * * * *
63958192 ATATGTGGTTACATGGAAGACCATGTCTGGGACATCGGCATCG-T
1 ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
* *
63958236 AT-T-TG-ATTCGTGTAAGACCCA-GTTTGGGACAG-TGGCATCGAT
1 ATATGTGTTTTCGTGTAAGA-CCATGTCTGGGAC-GTTGGCATCGAT
63958278 AT
1 AT
63958280 GAGATGACAT
Statistics
Matches: 109, Mismatches: 21, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
41 23 0.21
42 8 0.07
43 1 0.01
44 3 0.03
45 74 0.68
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATCGAT
Found at i:63970935 original size:112 final size:112
Alignment explanation
Indices: 63970738--63970953 Score: 306
Period size: 112 Copynumber: 1.9 Consensus size: 112
63970728 ACAACGGAAC
63970738 ATAAATGATGAATTTCATTTTATTCAAGACCGAAACCATCGTGTCTTACAAACTGAAAAAGACCA
1 ATAAATGATGAATTTCATTTTATTCAAGACCGAAACCATCGTGTCTTACAAACTGAAAAAGACCA
*
63970803 TGTTTAACAGCAACACGAGCAAGTTTCTAAATACTAATAAAACAAAA
66 TGTTTAACAGCAACACGAGCAACTTTCTAAATACTAATAAAACAAAA
* * * * * * * *
63970850 ATAAATGATGAATTTGATTTTGTTCCAGATCGATACCATTGTGTCTTACAAATTGAAAAATACCA
1 ATAAATGATGAATTTCATTTTATTCAAGACCGAAACCATCGTGTCTTACAAACTGAAAAAGACCA
* ** * *
63970915 TTTTTAATGGCAACATGAGCAACTTTCTTAATACTAATA
66 TGTTTAACAGCAACACGAGCAACTTTCTAAATACTAATA
63970954 TTTGAGATAA
Statistics
Matches: 90, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
112 90 1.00
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (112 bp):
ATAAATGATGAATTTCATTTTATTCAAGACCGAAACCATCGTGTCTTACAAACTGAAAAAGACCA
TGTTTAACAGCAACACGAGCAACTTTCTAAATACTAATAAAACAAAA
Found at i:63972603 original size:2 final size:2
Alignment explanation
Indices: 63972596--63972627 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
63972586 CGGTTTCCGC
63972596 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
63972628 GGGGGGAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:63977703 original size:28 final size:29
Alignment explanation
Indices: 63977672--63977728 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
63977662 TATGAGTCCT
* * *
63977672 AAGGTTTTAGTCT-CTTTTTATGAGCTGA
1 AAGGTTTCAGTCTCCCTTTGATGAGCTGA
63977700 AAGGTTTCAGTCTCCCTTTGATGAGCTGA
1 AAGGTTTCAGTCTCCCTTTGATGAGCTGA
63977729 GCTATCAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (29 bp):
AAGGTTTCAGTCTCCCTTTGATGAGCTGA
Found at i:63982871 original size:72 final size:72
Alignment explanation
Indices: 63982789--63982935 Score: 294
Period size: 72 Copynumber: 2.0 Consensus size: 72
63982779 TAATCCTTCA
63982789 TTTCTTTCTGATTTTTTCTTTTAAGTTTTTTTTTTCTTTCCTAGTGTTAATTTCCAAGAATGTAA
1 TTTCTTTCTGATTTTTTCTTTTAAGTTTTTTTTTTCTTTCCTAGTGTTAATTTCCAAGAATGTAA
63982854 ATTATAT
66 ATTATAT
63982861 TTTCTTTCTGATTTTTTCTTTTAAGTTTTTTTTTTCTTTCCTAGTGTTAATTTCCAAGAATGTAA
1 TTTCTTTCTGATTTTTTCTTTTAAGTTTTTTTTTTCTTTCCTAGTGTTAATTTCCAAGAATGTAA
63982926 ATTATAT
66 ATTATAT
63982933 TTT
1 TTT
63982936 ACCAAGATAC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 75 1.00
ACGTcount: A:0.20, C:0.11, G:0.08, T:0.61
Consensus pattern (72 bp):
TTTCTTTCTGATTTTTTCTTTTAAGTTTTTTTTTTCTTTCCTAGTGTTAATTTCCAAGAATGTAA
ATTATAT
Found at i:63983696 original size:8 final size:8
Alignment explanation
Indices: 63983685--63983710 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
63983675 GATTGATTGA
63983685 TAGATAGG
1 TAGATAGG
63983693 TAGATAGG
1 TAGATAGG
63983701 TAGATAGG
1 TAGATAGG
63983709 TA
1 TA
63983711 TTTGATGTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.35, T:0.27
Consensus pattern (8 bp):
TAGATAGG
Found at i:63984417 original size:18 final size:19
Alignment explanation
Indices: 63984392--63984442 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
63984382 TGAAAATAAC
63984392 ACTTATAATTAATAAAAGT
1 ACTTATAATTAATAAAAGT
* * *
63984411 -TTTATAATTGAT-GAAGT
1 ACTTATAATTAATAAAAGT
63984428 ACTTATAATTAATAA
1 ACTTATAATTAATAA
63984443 TATAAAGTAT
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
17 4 0.17
18 20 0.83
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (19 bp):
ACTTATAATTAATAAAAGT
Found at i:63997989 original size:88 final size:88
Alignment explanation
Indices: 63997835--63998961 Score: 1399
Period size: 88 Copynumber: 12.8 Consensus size: 88
63997825 AACATCGGTG
** * *
63997835 AATTCACAGATCTTATCTCTTTAACCAGTAGTGGAGCAGATCGAAGACGGTGAGTCTTATCCCCC
1 AATT-ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCC
* *
63997900 TAAGCAGTAGGGAAACAGACTAGA
65 TAAGCAGTAGGGAAACAGGCTGGA
* *
63997924 AATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGACGGTAAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
63997989 AAGCAGTAGGGAAACAGGCTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* * *
63998012 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGACAGTGAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* *
63998077 AAGCAGCAGGGAAACAGGCTGAA
66 AAGCAGTAGGGAAACAGGCTGGA
* *
63998100 AATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
**
63998165 AAGCAGTAGGGAAACAGGCTAAA
66 AAGCAGTAGGGAAACAGGCTGGA
* ** *
63998188 AATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
*
63998253 AAGCAGTAGGGAAATAGGCTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* *
63998276 AATTACAGATATTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* **
63998341 AAGCAGTAGGAAAACAGGCTAAA
66 AAGCAGTAGGGAAACAGGCTGGA
* ** *
63998364 AATTACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGATAGTAAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
*
63998429 AAGCAGTAGGGAAATAGGCTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* *
63998452 AATTACAGATATTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* *
63998517 AAGCAGTAGAGAAACAGACTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
** ** * *
63998540 AATTACAGATCTTATCTCTTTAAATAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTATCCCTCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* *
63998605 AAGCAGTAGGGAAATAGGTTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* * * * *
63998628 AATTACAGATTTTATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGAGGGTGACCCTTATCCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
* *
63998693 AAGCATTAGGAAAACAGGCTGGA
66 AAGCAGTAGGGAAACAGGCTGGA
* ** **** ** *
63998716 AATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAG-CCACCATTC-TATCTCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
** *
63998779 AAGCAGTAGTGG-AGTAGGCT-AA
66 AAGCAGTAG-GGAAACAGGCTGGA
* ** * **
63998801 AGAATACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCATATCTTCC
1 A-ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCC
* ** *
63998866 TAAGCAGTAGTGG-AGCAGATTTAGGC
65 TAAGCAGTAG-GGAAACAG-GCT-GGA
* * * ** ** *
63998892 CA-T-CATA-C-TATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
63998953 AAGCAGTAG
66 AAGCAGTAG
63998962 TGGAGCAGAT
Statistics
Matches: 913, Mismatches: 118, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
85 2 0.00
86 119 0.13
87 8 0.01
88 777 0.85
89 6 0.01
90 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (88 bp):
AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCT
AAGCAGTAGGGAAACAGGCTGGA
Found at i:63998816 original size:86 final size:88
Alignment explanation
Indices: 63997840--63999147 Score: 431
Period size: 88 Copynumber: 15.0 Consensus size: 88
63997830 CGGTGAATTC
** * * **** * *
63997840 ACAGATCTTATCTCTTTAACCAGTAGTGGAGCAGATCGAAGACGGTGAGTCTTATCCCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAGC
** ** *
63997905 AGTAG-GGAAACAGACTAGAA-ATT
66 AGTAGTGG-AGTAGGTTA-AAGAAT
* * *** * *
63997928 ACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGA-CGGTAAGCCTTATCCCCCTAAG
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAA-TCTTATCTCCCTAAG
** ** *
63997992 CAGTAG-GGAAACAGGCTGGAA-ATT
65 CAGTAGTGG-AGTAGG-TTAAAGAAT
* ** ** ** *
63998016 ACAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCAAAGA-CAGTGAGCCTTATCCCCCTAAG
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCA-CCAATCTTATCTCCCTAAG
* ** * *
63998080 CAGCAG-GGAAACAGGCTGAAA-ATT
65 CAGTAGTGG-AGTAGG-TTAAAGAAT
* ** **** ** *
63998104 ACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTATCCCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAGC
** *
63998169 AGTAG-GGAAACAGGCTAAA-AATT
66 AGTAGTGG-AGTAGGTTAAAGAA-T
* * * ** * *
63998192 ACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGA-TAGTAAGCCTTATCCCCCTAAG
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAA-TCTTATCTCCCTAAG
* ** *
63998256 CAGTAG-GGAAATAGGCTGGAA-ATT
65 CAGTAGTGG-AGTAGG-TTAAAGAAT
* * * **** ** *
63998280 ACAGATATTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAGC
* ** *
63998345 AGTAG-GAAAACAGGCTAAA-AATT
66 AGTAGTG-GAGTAGGTTAAAGAA-T
* * * ** * *
63998368 ACAGATCTTATCTCCCTAACCAGTAGTGGAGCAGATCGAAGA-TAGTAAGCCTTATCCCCCTAAG
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAA-TCTTATCTCCCTAAG
* ** *
63998432 CAGTAG-GGAAATAGGCTGGAA-ATT
65 CAGTAGTGG-AGTAGG-TTAAAGAAT
* * * **** ** *
63998456 ACAGATATTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAGC
* * ** * ** *
63998521 AGTAGAGAAACAGACTGGAA-ATT
66 AGTAGTGGAGTAG-GTTAAAGAAT
** ** ** **** **
63998544 ACAGATCTTATCTCTTTAAATAGTAGTGGAGCAGATCAAAGACGGTGAGCCTTATC-CCTCTAAG
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCC-CTAAG
* * *
63998608 CAGTAG-GGAAATAGGTTGGAA-ATT
65 CAGTAGTGG-AGTAGGTT-AAAGAAT
* * * * ***** ** *
63998632 ACAGATTTTATCTCCCTAAGTAGTAGTGGAGTAGATCGAAGAGGGTGACCCTTATCCCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAGC
* * ** ** *
63998697 ATTAG-GAAAACAGGCTGGAA-ATT
66 AGTAGTG-GAGTAGG-TTAAAGAAT
* * *
63998720 ATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAG-CCACCATTC-TATCTCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAGC
*
63998783 AGTAGTGGAGTAGGCTAAAGAAT
66 AGTAGTGGAGTAGGTTAAAGAAT
* **** * *
63998806 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCATATCTTCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAGC
* * * * *
63998871 AGTAGTGGAGCAGATTTAGGCCAT
66 AGTAGTGGAGTAGGTTAAAG-AAT
* * * * *
63998895 -CATA-C-TATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTCCCTAAGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAGC
* * * **
63998957 AGTAGTGGAGCAGATTTAAG-CC
66 AGTAGTGGAGTAGGTTAAAGAAT
* * * * ** **
63998979 AC-CAT-TCTATCTCCCTAAACAATAGTGGAGTAGGCTGAAGATTA-CAGATCTTATCTCCCTAA
1 ACAGATCT-TATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCA-ATCTTATCTCCCTAA
* **
63999041 GCAGTAGTGGAGTAGATCGAAGACA-
64 GCAGTAGTGGAGTAGGTTAAAGA-AT
* * * * * * *
63999066 GC-GAATCTTGTCTCCCTAAGCAGTACTTGAGCAGATTTAAG-CCACCATTC-TATCTCCCTACG
1 ACAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAG
63999128 CAGTAGTGGAGTAGGTTAAA
65 CAGTAGTGGAGTAGGTTAAA
63999148 ACCACAATTC
Statistics
Matches: 1005, Mismatches: 178, Indels: 76
0.80 0.14 0.06
Matches are distributed among these distances:
84 1 0.00
85 4 0.00
86 221 0.22
87 27 0.03
88 736 0.73
89 16 0.02
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (88 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACCACCAATCTTATCTCCCTAAGC
AGTAGTGGAGTAGGTTAAAGAAT
Found at i:63998944 original size:130 final size:130
Alignment explanation
Indices: 63998728--63998971 Score: 366
Period size: 130 Copynumber: 1.9 Consensus size: 130
63998718 TTATAGATCT
*
63998728 TATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATTCTATCTCCCTAAGCAGTAGTGGAG
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATACTATCTCCCTAAGCAGTAGTGGAG
* *
63998793 TAGGCTAAAGAATACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCA
66 CAGGCTAAAGAAGACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCA
* * * *
63998858 TATCTTCCTAAGCAGTAGTGGAGCAGATTTAGGCCATCATACTATCTCCCTAAGTAGTAGTGGAG
1 TATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATACTATCTCCCTAAGCAGTAGTGGAG
* * *
63998923 CA-GATCGAAGACGAC-GAATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
66 CAGGCT-AAAGAAGACAG-ATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
63998972 TTAAGCCACC
Statistics
Matches: 102, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
129 3 0.03
130 99 0.97
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (130 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATACTATCTCCCTAAGCAGTAGTGGAG
CAGGCTAAAGAAGACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCA
Found at i:63998963 original size:216 final size:216
Alignment explanation
Indices: 63998724--63999138 Score: 677
Period size: 216 Copynumber: 1.9 Consensus size: 216
63998714 GAAATTATAG
* *
63998724 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATTCTATCTCCCTAAGCAGTAGT
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGT
* *
63998789 GGAGTAGGCTAAAGAATACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGA
66 GGAGTAGGCTAAAGAATACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGA
* * * * *
63998854 ATCATATCTTCCTAAGCAGTAGTGGAGCAGATTTAGGCCATCATACTATCTCCCTAAGTAGTAGT
131 ATCATATCTCCCTAAGCAGTACTGGAGCAGATTTAAGCCACCATACTATCTCCCTAAGCAGTAGT
63998919 GGAGCAGATCGAAGACGACGA
196 GGAGCAGATCGAAGACGACGA
63998940 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGT
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGT
* * *
63999005 GGAGTAGGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACAGCGA
66 GGAGTAGGCTAAAGAATACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGA
* * * * *
63999070 ATCTTGTCTCCCTAAGCAGTACTTGAGCAGATTTAAGCCACCATTCTATCTCCCTACGCAGTAGT
131 ATCATATCTCCCTAAGCAGTACTGGAGCAGATTTAAGCCACCATACTATCTCCCTAAGCAGTAGT
63999135 GGAG
196 GGAG
63999139 TAGGTTAAAA
Statistics
Matches: 182, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
216 182 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (216 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGT
GGAGTAGGCTAAAGAATACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGA
ATCATATCTCCCTAAGCAGTACTGGAGCAGATTTAAGCCACCATACTATCTCCCTAAGCAGTAGT
GGAGCAGATCGAAGACGACGA
Found at i:63999034 original size:130 final size:130
Alignment explanation
Indices: 63998900--63999142 Score: 398
Period size: 130 Copynumber: 1.9 Consensus size: 130
63998890 GCCATCATAC
* *
63998900 TATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGAC-GACGAATCTTATCTCCCTAAGCAGTAGTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAG-CGAATCTTATCTCCCTAAGCAGTACTG
63998964 GAGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGTGGAGTAGGCTGAAGATTACAGATC
65 GAGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGTGGAGTAGGCTGAAGATTACAGATC
63999029 T
130 T
* * *
63999030 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACAGCGAATCTTGTCTCCCTAAGCAGTACTTG
1 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTCCCTAAGCAGTACTGG
** *
63999095 AGCAGATTTAAGCCACCATTCTATCTCCCTACGCAGTAGTGGAGTAGG
66 AGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGTGGAGTAGG
63999143 TTAAAACCAC
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
130 103 0.99
131 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (130 bp):
TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCGAATCTTATCTCCCTAAGCAGTACTGG
AGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGTGGAGTAGGCTGAAGATTACAGATCT
Found at i:63999063 original size:44 final size:44
Alignment explanation
Indices: 63998724--63999142 Score: 215
Period size: 44 Copynumber: 9.7 Consensus size: 44
63998714 GAAATTATAG
* ** * * *
63998724 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCA-CCA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGACAGCGA
* * *
63998767 TTC-TATCTCCCTAAGCAGTAGTGGAGTAGGCTAAAGA-ATAC-A
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGACA-GCGA
* * * *
63998809 GATCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCGAAGACGGTGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCT-GAAGACAGCGA
* * * ** * * * *
63998854 ATCATATCTTCCTAAGCAGTAGTGGAGCAGATTTAGGCCATC--
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGACAGCGA
* * *
63998896 ATAC-TATCTCCCTAAGTAGTAGTGGAGCA-GATCGAAGAC-GACGA
1 AT-CTTATCTCCCTAAGCAGTAGTGGAGTAGGCT-GAAGACAG-CGA
* ** * * *
63998940 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTTAAGCCA-CCA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGACAGCGA
* * * *
63998983 TTC-TATCTCCCTAAACAATAGTGGAGTAGGCTGAAGATTA-C-A
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGA-CAGCGA
*
63999025 GATCTTATCTCCCTAAGCAGTAGTGGAGTA-GATCGAAGACAGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCT-GAAGACAGCGA
* * * * ** * * *
63999070 ATCTTGTCTCCCTAAGCAGTACTTGAGCAGATTTAAGCCA-CCA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGACAGCGA
* *
63999113 TTC-TATCTCCCTACGCAGTAGTGGAGTAGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGG
63999143 TTAAAACCAC
Statistics
Matches: 286, Mismatches: 67, Indels: 47
0.71 0.17 0.12
Matches are distributed among these distances:
41 2 0.01
42 108 0.38
43 24 0.08
44 147 0.51
45 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGTAGGCTGAAGACAGCGA
Found at i:63999183 original size:130 final size:130
Alignment explanation
Indices: 63998900--63999213 Score: 361
Period size: 130 Copynumber: 2.4 Consensus size: 130
63998890 GCCATCATAC
* * * *
63998900 TATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTCCCTAAGCAGTAGTGG
1 TATCTCCCTAAGCAGTAGCGGAGTAGATCGAAGACGACGAATCTTATCTCCCTAAGCAGTACTGG
* ** *
63998965 AGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGTGGAGTAGGCTGAAGATTACAGATCT
66 AGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGTGGAGTAGGCTGAAAACCACAGATCA
* * *
63999030 TATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGAC-AGCGAATCTTGTCTCCCTAAGCAGTACTT
1 TATCTCCCTAAGCAGTAGCGGAGTAGATCGAAGACGA-CGAATCTTATCTCCCTAAGCAGTACTG
** * *
63999094 GAGCAGATTTAAGCCACCATTCTATCTCCCTACGCAGTAGTGGAGTAGG-TTAAAACCACA-ATT
65 GAGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGTGGAGTAGGCTGAAAACCACAGA-T
63999157 CA
129 CA
* ** * *
63999159 TATCTCCTTGAAG-TTTCAGCGGAGTAGATCGAAG-CTACAAATCTCT-TCTCCCTAA
1 TATCTCCCT-AAGCAGT-AGCGGAGTAGATCGAAGACGACGAATCT-TATCTCCCTAA
63999214 AATGACATTA
Statistics
Matches: 160, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
128 1 0.01
129 35 0.22
130 124 0.77
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.26
Consensus pattern (130 bp):
TATCTCCCTAAGCAGTAGCGGAGTAGATCGAAGACGACGAATCTTATCTCCCTAAGCAGTACTGG
AGCAGATTTAAGCCACCATTCTATCTCCCTAAACAATAGTGGAGTAGGCTGAAAACCACAGATCA
Found at i:63999209 original size:44 final size:44
Alignment explanation
Indices: 63999161--63999566 Score: 166
Period size: 44 Copynumber: 9.2 Consensus size: 44
63999151 ACAATTCATA
* *
63999161 TCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCT
1 TCTCCCTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCT
* * ** *** *** * *
63999205 TCTCCCTAAAATGACATTAGAACGGCTCGAAGCCAC-AAT-TCGT
1 TCTCCCTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTC-T
* *
63999248 ATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCT
1 -TCTCCCTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCT
* ** ** **
63999293 TCTCCCTGAAATGGCATTGG-GGCGACTCGAAGCTAC-AAT-TCGT
1 TCTCCCTGAAGTTCCAGCGGAGTAGA-TCGAAGCTACAAATCTC-T
* * * *
63999336 ATCTCCTTAAAGTTCCAGCGGAGTAGATTGAGGCTACAAATCTCT
1 -TCTCCCTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCT
* * ** * * * *
63999381 TCTCCCTGAAATTGCATTGGAG-CGACTCAAAACCAC-AAT-TCGT
1 TCTCCCTGAAGTTCCAGCGGAGTAGA-TCGAAGCTACAAATCTC-T
* * *
63999424 ATCTCCTTAAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCT
1 -TCTCCCTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCT
* ** ** ** * * * * *
63999469 TCTCCCTGAAATGGCATTGGAGCGGCTCAAAAC--CATAATTTTT
1 TCTCCCTGAAGTTCCAGCGGAGTAGATCGAAGCTACA-AATCTCT
* * * *
63999512 ATCTACTTGAAGTTCTAGCGGAGTAGATCGAAGCTAAAAATCTCT
1 -TCTCCCTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCT
63999557 TCTCCCTGAA
1 TCTCCCTGAA
63999567 ATTACAATGG
Statistics
Matches: 241, Mismatches: 101, Indels: 40
0.63 0.26 0.10
Matches are distributed among these distances:
42 8 0.03
43 22 0.09
44 182 0.76
45 22 0.09
46 7 0.03
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (44 bp):
TCTCCCTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCT
Found at i:63999298 original size:88 final size:88
Alignment explanation
Indices: 63999145--63999568 Score: 605
Period size: 88 Copynumber: 4.8 Consensus size: 88
63999135 GGAGTAGGTT
* *
63999145 AAAACCACAATTCATATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCC
1 AAAACCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCC
* * * * *
63999210 CTAAAATGACATTAGAACGGCTC
66 CTGAAATGGCATTGGAGCGACTC
* * *
63999233 GAAGCCACAATTCGTATCTCCTTGAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCC
1 AAAACCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCC
*
63999298 CTGAAATGGCATTGGGGCGACTC
66 CTGAAATGGCATTGGAGCGACTC
* * * * * *
63999321 GAAGCTACAATTCGTATCTCCTTAAAGTTCCAGCGGAGTAGATTGAGGCTACAAATCTCTTCTCC
1 AAAACCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCC
*
63999386 CTGAAATTGCATTGGAGCGACTC
66 CTGAAATGGCATTGGAGCGACTC
* *
63999409 AAAACCACAATTCGTATCTCCTTAAAGTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCC
1 AAAACCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCC
*
63999474 CTGAAATGGCATTGGAGCGGCTC
66 CTGAAATGGCATTGGAGCGACTC
* ** * * *
63999497 AAAACCATAATTTTTATCTACTTGAAGTTCTAGCGGAGTAGATCGAAGCTAAAAATCTCTTCTCC
1 AAAACCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCC
63999562 CTGAAAT
66 CTGAAAT
63999569 TACAATGGAA
Statistics
Matches: 302, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 302 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (88 bp):
AAAACCACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCC
CTGAAATGGCATTGGAGCGACTC
Found at i:63999702 original size:44 final size:44
Alignment explanation
Indices: 63999602--63999990 Score: 231
Period size: 44 Copynumber: 8.8 Consensus size: 44
63999592 TAAATTATAG
* * * *
63999602 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATT-AA-A-ACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGA
* * *
63999643 ACCTTATCTACCTGAAGTTGCAGTGGAGCAGATTGAAGTTACGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGA
* * * * *
63999687 GTTTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGA
* * * * *
63999731 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTA-TA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGA
* * ** **
63999774 TATCCTATACGT--CTGAAGTTGCAGTAGG-TCAGATCAAACCTACCATGGTGA
1 -ATCTTAT-C-TCCCTGAAGTTGCAGT-GGAGCAGATTGAAGATA-C-----GA
* * * ** *
63999825 ATCTCATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGCCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGA
* * * * *
63999869 ACCTTATCCCCCTAAAGTTGCAGTGGGGCA-AGTTGAAGTTAC-A
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGATACGA
* *
63999912 AGTCTTGTCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATA-GAA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACG-A
* * *
63999957 GATCTTATCTCCTTGAATTTGCAATGGAGCAGAT
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
63999991 CAAGCTGCAA
Statistics
Matches: 264, Mismatches: 61, Indels: 42
0.72 0.17 0.11
Matches are distributed among these distances:
41 29 0.11
42 2 0.01
43 4 0.02
44 165 0.62
45 31 0.12
46 2 0.01
48 1 0.00
49 4 0.02
50 25 0.09
51 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGA
Found at i:64002129 original size:13 final size:13
Alignment explanation
Indices: 64002113--64002137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64002103 TTTTCTTTAA
64002113 TATTTATTTATTG
1 TATTTATTTATTG
64002126 TATTTATTTATT
1 TATTTATTTATT
64002138 TATCCCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TATTTATTTATTG
Found at i:64005760 original size:12 final size:12
Alignment explanation
Indices: 64005738--64005778 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
64005728 CTCCTCCACT
64005738 TTTTCTT-TTTC
1 TTTTCTTCTTTC
64005749 ATTTT-TTCTTTC
1 -TTTTCTTCTTTC
*
64005761 TTTTCTTCTTTG
1 TTTTCTTCTTTC
64005773 TTTTCT
1 TTTTCT
64005779 GCCGAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 6 0.23
12 20 0.77
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.78
Consensus pattern (12 bp):
TTTTCTTCTTTC
Found at i:64008222 original size:53 final size:54
Alignment explanation
Indices: 64008049--64008255 Score: 229
Period size: 53 Copynumber: 3.8 Consensus size: 54
64008039 ATTAGGGTTT
* * * *
64008049 AAGGATACCAAGTAAGACCATGCCAAGGCATGACATTGGTAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCTATAAGGC
* * * * * * * *
64008103 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGT-AAGTTCTATAAGGC
* * * *
64008158 AAAGATCCCATGTAAGACCATGCCAAGGCATGACAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCTATAAGGC
*
64008211 AAGGATACCATGTAAGACCATGTCAAGACATGGA-AATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACAT-GACAATGGTAAGTT
64008256 TAAAAAGGAA
Statistics
Matches: 124, Mismatches: 27, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
53 44 0.35
54 38 0.31
55 42 0.34
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACAATGGTAAGTTCTATAAGGC
Found at i:64009648 original size:33 final size:35
Alignment explanation
Indices: 64009600--64009674 Score: 100
Period size: 33 Copynumber: 2.2 Consensus size: 35
64009590 AAAACTAAAT
* * *
64009600 GACTGATACTGATACTGAGATGGGCTAAGG-CCAA
1 GACTGTTACTGATACTGAAAAGGGCTAAGGCCCAA
*
64009634 -ACTGTTACTGATACTGAAAAGGGCTTAGGCCCAA
1 GACTGTTACTGATACTGAAAAGGGCTAAGGCCCAA
64009668 GACTGTT
1 GACTGTT
64009675 TGACTGTGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 25 0.71
34 4 0.11
35 6 0.17
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (35 bp):
GACTGTTACTGATACTGAAAAGGGCTAAGGCCCAA
Found at i:64010890 original size:40 final size:40
Alignment explanation
Indices: 64010815--64011079 Score: 322
Period size: 40 Copynumber: 6.7 Consensus size: 40
64010805 TGAGCCTACA
* *
64010815 GGTCTTT-AACCCGGATTCCATTCCAGCACGAAGCCTGCA
1 GGTCTTTAAACCCGGATACCATTCCAGCACGAAGCCTGCG
* * * *
64010854 GGTCTTTAAACCCAGATACAATTCTAGCA-TATAGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCACGA-AGCCTGCG
* * *
64010894 GGTCTTTAAACTCGGATTCCATTCCAGAACGAAGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCACGAAGCCTGCG
** * *
64010934 GGTCTTTAAACTTGGATACAATTCCAGCA-TATAGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCACGA-AGCCTGCG
* *
64010974 GGTCTTTAAACTCGGATACCATTCTAGCACGAAGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCACGAAGCCTGCG
* *
64011014 GGTCTTTAAACCCGGATACAATTCCAGCA-TATAGCCTGCG
1 GGTCTTTAAACCCGGATACCATTCCAGCACGA-AGCCTGCG
64011054 GGTCTTTAAACCCGGATACCATTCCA
1 GGTCTTTAAACCCGGATACCATTCCA
64011080 ATACTTATAT
Statistics
Matches: 193, Mismatches: 27, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
39 10 0.05
40 181 0.94
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
GGTCTTTAAACCCGGATACCATTCCAGCACGAAGCCTGCG
Found at i:64010926 original size:80 final size:80
Alignment explanation
Indices: 64010815--64011079 Score: 424
Period size: 80 Copynumber: 3.3 Consensus size: 80
64010805 TGAGCCTACA
* * * *
64010815 GGTCTTT-AACCCGGATTCCATTCCAGCACGAAGCCTGCAGGTCTTTAAACCCAGATACAATTCT
1 GGTCTTTAAACCCGGATACCATTCCAGCACGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
64010879 AGCATATAGCCTGCG
66 AGCATATAGCCTGCG
* * * **
64010894 GGTCTTTAAACTCGGATTCCATTCCAGAACGAAGCCTGCGGGTCTTTAAACTTGGATACAATTCC
1 GGTCTTTAAACCCGGATACCATTCCAGCACGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
64010959 AGCATATAGCCTGCG
66 AGCATATAGCCTGCG
* *
64010974 GGTCTTTAAACTCGGATACCATTCTAGCACGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
1 GGTCTTTAAACCCGGATACCATTCCAGCACGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
64011039 AGCATATAGCCTGCG
66 AGCATATAGCCTGCG
64011054 GGTCTTTAAACCCGGATACCATTCCA
1 GGTCTTTAAACCCGGATACCATTCCA
64011080 ATACTTATAT
Statistics
Matches: 171, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 7 0.04
80 164 0.96
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (80 bp):
GGTCTTTAAACCCGGATACCATTCCAGCACGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCC
AGCATATAGCCTGCG
Found at i:64013764 original size:20 final size:20
Alignment explanation
Indices: 64013739--64013781 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
64013729 TTTTTCTCAT
64013739 GCGGCTTCAATTGCCTCGAC
1 GCGGCTTCAATTGCCTCGAC
64013759 GCGGCTTCAATTGCCTCGAC
1 GCGGCTTCAATTGCCTCGAC
64013779 GCG
1 GCG
64013782 TAAGCTACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.14, C:0.35, G:0.28, T:0.23
Consensus pattern (20 bp):
GCGGCTTCAATTGCCTCGAC
Found at i:64017676 original size:40 final size:40
Alignment explanation
Indices: 64017589--64017865 Score: 339
Period size: 40 Copynumber: 7.0 Consensus size: 40
64017579 ACATTTCTAA
* * * *
64017589 CACG-AGCCTACGGGTCTTT-AACCTGGATTCCATTCTAG
1 CACGAAGCCTGCGGGTCTTTAAACCCGGATACCATTCCAG
* *
64017627 CACGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCTAG
1 CACGAAGCCTGCGGGTCTTTAAACCCGGATACCATTCCAG
* * * *
64017667 CA-TATAGCCTGCGGGTCTTTAAACCTGGATTCCATTCCAA
1 CACGA-AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAG
* * *
64017707 CACGAAGCCTGCGGGTCTTTAAACCCGAACACAATTCCAG
1 CACGAAGCCTGCGGGTCTTTAAACCCGGATACCATTCCAG
* *
64017747 CA-TATAGCCTGCGAGTCTTTAAACCCGGATACCATTCCAG
1 CACGA-AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAG
*
64017787 CACGAAGCCTGCGGGTCTTTAAACCCGGATACAATTCCAG
1 CACGAAGCCTGCGGGTCTTTAAACCCGGATACCATTCCAG
*
64017827 CA-TATAGCCTGCGGGTCTTTAAACCCGGATACCATTCCA
1 CACGA-AGCCTGCGGGTCTTTAAACCCGGATACCATTCCA
64017866 ATACTCATAT
Statistics
Matches: 205, Mismatches: 27, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
38 4 0.02
39 17 0.08
40 182 0.89
41 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (40 bp):
CACGAAGCCTGCGGGTCTTTAAACCCGGATACCATTCCAG
Found at i:64017725 original size:80 final size:80
Alignment explanation
Indices: 64017593--64017866 Score: 433
Period size: 80 Copynumber: 3.4 Consensus size: 80
64017583 TTCTAACACG
* * * * *
64017593 AGCCTACGGGTCTTT-AACCTGGATTCCATTCTAGCACGAAGCCTGCGGGTCTTTAAACCCGGAT
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAACACGAAGCCTGCGGGTCTTTAAACCCGGAT
*
64017657 ACAATTCTAGCATAT
66 ACAATTCCAGCATAT
* * * *
64017672 AGCCTGCGGGTCTTTAAACCTGGATTCCATTCCAACACGAAGCCTGCGGGTCTTTAAACCCGAAC
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAACACGAAGCCTGCGGGTCTTTAAACCCGGAT
64017737 ACAATTCCAGCATAT
66 ACAATTCCAGCATAT
* *
64017752 AGCCTGCGAGTCTTTAAACCCGGATACCATTCCAGCACGAAGCCTGCGGGTCTTTAAACCCGGAT
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAACACGAAGCCTGCGGGTCTTTAAACCCGGAT
64017817 ACAATTCCAGCATAT
66 ACAATTCCAGCATAT
64017832 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAA
1 AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAA
64017867 TACTCATATT
Statistics
Matches: 180, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 14 0.08
80 166 0.92
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
AGCCTGCGGGTCTTTAAACCCGGATACCATTCCAACACGAAGCCTGCGGGTCTTTAAACCCGGAT
ACAATTCCAGCATAT
Found at i:64026630 original size:27 final size:28
Alignment explanation
Indices: 64026546--64026643 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
64026536 CATGAGATTG
* * * *
64026546 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
64026575 GCACTAAGCGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
64026603 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
64026630 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
64026644 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 24 0.39
28 21 0.34
29 17 0.27
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:64026654 original size:27 final size:27
Alignment explanation
Indices: 64026574--64026656 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
64026564 TAAATTGTAC
* * *
64026574 AGCACTAAGCGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
64026602 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
64026629 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
64026656 A
1 A
64026657 TTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 30 0.61
28 19 0.39
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:64026657 original size:29 final size:27
Alignment explanation
Indices: 64026546--64026657 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
64026536 CATGAGATTG
** * *
64026546 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* * *
64026575 GCACTAAGCGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
64026603 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
64026630 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
64026658 TTTTGAATCA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
27 23 0.33
28 27 0.39
29 20 0.29
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:64045849 original size:26 final size:26
Alignment explanation
Indices: 64045813--64045870 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
64045803 GAAGCTCTAG
*
64045813 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
64045839 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
64045865 AGAGCC
1 AGAGCC
64045871 GTATATCGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:64045878 original size:26 final size:26
Alignment explanation
Indices: 64045827--64045881 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
64045817 CCATTAATTA
*
64045827 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCACAAAGAGCCTATAATCG
*
64045853 GGAAGCTCACGAAGAGCCGTAT-ATCG
1 GGAAGCTCACAAAGAGCC-TATAATCG
64045879 GGA
1 GGA
64045882 CGTTCATAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 24 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.22, G:0.29, T:0.16
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCTATAATCG
Found at i:64046164 original size:20 final size:20
Alignment explanation
Indices: 64046139--64046177 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
64046129 GCATTTATAC
64046139 AATTC-ACATATACAATATTA
1 AATTCAACATATA-AATATTA
64046159 AATTCAAACATATAAATAT
1 AATTC-AACATATAAATAT
64046178 ACAAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 5 0.29
22 7 0.41
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (20 bp):
AATTCAACATATAAATATTA
Found at i:64053829 original size:94 final size:94
Alignment explanation
Indices: 64053668--64054137 Score: 832
Period size: 94 Copynumber: 5.0 Consensus size: 94
64053658 AATGTGACCG
* * *
64053668 TATATGCTATTTGAATTAAATAAGTTGCCATATTATAATGAGTTACCATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAGTTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
64053733 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
64053762 TATATGCTATTTGAATTAAATAAGTTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAGTTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
64053827 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
64053856 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTCTGCG
1 TATATGCTATTTGAATTAAGTAAGTTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
64053921 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
64053950 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAGTTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
64054015 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
64054044 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAGTTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
64054109 GAATTAAATGGCACTATGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
64054138 GAATGTCGAT
Statistics
Matches: 362, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 362 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAGTTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:64057420 original size:28 final size:30
Alignment explanation
Indices: 64057366--64057424 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
64057356 AATTTAGGCA
*
64057366 ATATATTTGCTATTCTGATGGCATGTCTAC
1 ATATATTTGCTATTCTGATAGCATGTCTAC
* *
64057396 ATATATTTG-TA-TCTGGTAGCTTGTCTAC
1 ATATATTTGCTATTCTGATAGCATGTCTAC
64057424 A
1 A
64057425 AATTTTGGTG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 15 0.58
29 2 0.08
30 9 0.35
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (30 bp):
ATATATTTGCTATTCTGATAGCATGTCTAC
Found at i:64059594 original size:52 final size:52
Alignment explanation
Indices: 64059532--64059635 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
64059522 TATATACGGG
64059532 TTAGCTTCTTTGCTTGCTTAGTTGTTTCAATTATCTTCAAATTCTTGTCACT
1 TTAGCTTCTTTGCTTGCTTAGTTGTTTCAATTATCTTCAAATTCTTGTCACT
64059584 TTAGCTTCTTTGCTTGCTTAGTTGTTTCAATTATCTTCAAATTCTTGTCACT
1 TTAGCTTCTTTGCTTGCTTAGTTGTTTCAATTATCTTCAAATTCTTGTCACT
64059636 ATATATTTTG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (52 bp):
TTAGCTTCTTTGCTTGCTTAGTTGTTTCAATTATCTTCAAATTCTTGTCACT
Found at i:64060310 original size:30 final size:31
Alignment explanation
Indices: 64060249--64060310 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
64060239 GGGGTTGGGA
* *
64060249 TGGGAAGGGAGTAAAAGTTTTAGGGGGAAAG
1 TGGGAAGGGAGTAAAAGTTTTAGAGGAAAAG
64060280 TGGGAA-GGAGTAAAAGTTTT-GAAGGAAAAG
1 TGGGAAGGGAGTAAAAGTTTTAG-AGGAAAAG
64060310 T
1 T
64060311 AAAAAGGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 1 0.04
30 21 0.75
31 6 0.21
ACGTcount: A:0.39, C:0.00, G:0.40, T:0.21
Consensus pattern (31 bp):
TGGGAAGGGAGTAAAAGTTTTAGAGGAAAAG
Found at i:64063186 original size:5 final size:5
Alignment explanation
Indices: 64063167--64063199 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
64063157 GCTTGGGGAG
*
64063167 AAAAT -AAAG AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
64063200 GATTTGTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:64072192 original size:40 final size:40
Alignment explanation
Indices: 64072155--64072377 Score: 251
Period size: 39 Copynumber: 5.7 Consensus size: 40
64072145 GCTACTCGTT
* *
64072155 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
64072195 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
64072234 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAATCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
64072274 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
64072313 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTTACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
64072354 CAAA-G-CTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
64072378 CATCATTCGA
Statistics
Matches: 160, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 79 0.49
40 71 0.44
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:64072338 original size:79 final size:80
Alignment explanation
Indices: 64072155--64072339 Score: 259
Period size: 79 Copynumber: 2.3 Consensus size: 80
64072145 GCTACTCGTT
* *
64072155 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAAATCGCACAAATGCCTTCGGACTTAACCCGG
*
64072219 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * * *
64072234 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAAATCGCACCAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAAATCGCACAAATGCCTTCGGACTTAACCCGG
*
64072298 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
*
64072313 CAAATGCCTTC-GGATCTTAGTCCGGAT
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT
64072340 ATGGTTACTT
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 3 0.03
79 89 0.95
80 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAAATCGCACAAATGCCTTCGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:64072371 original size:79 final size:79
Alignment explanation
Indices: 64072155--64072377 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 79
64072145 GCTACTCGTT
* * * * * *
64072155 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAAATAGCACAAA-GCCTTCGGGACTTAGCCCGG
*
64072219 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
64072234 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAATCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAAATAGCA-CAAAGCCTTCGGGACTTAGCCCGG
*
64072298 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
** * **
64072313 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTTACTTAGCACAAAG-CTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAG-TAAATAGCACAAAGCCTTCGGGACTTAGCCCG
64072376 GA
64 GA
64072378 CATCATTCGA
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
78 10 0.08
79 101 0.83
80 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAAATAGCACAAAGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:64074071 original size:38 final size:38
Alignment explanation
Indices: 64074028--64074141 Score: 228
Period size: 38 Copynumber: 3.0 Consensus size: 38
64074018 TTCAACCTTT
64074028 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
64074066 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
64074104 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
64074142 GGAGTTCTTG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 76 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:64075448 original size:39 final size:39
Alignment explanation
Indices: 64075326--64075467 Score: 164
Period size: 40 Copynumber: 3.6 Consensus size: 39
64075316 TACTCGAATG
*
64075326 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGA-C
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AG-GACC
* * *
64075366 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGGACC
*
64075405 ATATCCGGGCT-AGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-GACC
* *
64075444 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
64075468 CTTGTGCGAG
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
37 1 0.01
38 22 0.25
39 24 0.28
40 39 0.45
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGGACC
Found at i:64075486 original size:78 final size:79
Alignment explanation
Indices: 64075326--64075502 Score: 193
Period size: 78 Copynumber: 2.3 Consensus size: 79
64075316 TACTCGAATG
* * *
64075326 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACACATCCGGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACACATCCGGACTAAGACCCGAAGGCA
* *
64075391 TTTGTGCTAGGACT
66 CTTGTGCGAGGACT
* * **
64075405 ATATCCGGGCT-AGTCCCGAAGGCATTTATGCT-AGTGACCATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGA-CACATCCGGACTAAGACCCGAAGGC
**
64075468 -CTTGTGCGAGTGGTT
65 ACTTGTGCGAG-GACT
*
64075483 ATATCC-GGCTAA-ACCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
64075503 ATGCTTGATT
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
77 23 0.28
78 49 0.59
79 11 0.13
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAAGCGACACATCCGGACTAAGACCCGAAGGCA
CTTGTGCGAGGACT
Found at i:64076827 original size:19 final size:19
Alignment explanation
Indices: 64076803--64076842 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
64076793 AACCCTCGTG
64076803 TCCGACTCCGGCGACGGAC
1 TCCGACTCCGGCGACGGAC
64076822 TCCGACTCCGGCGACGGAC
1 TCCGACTCCGGCGACGGAC
64076841 TC
1 TC
64076843 GGGTACGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.42, G:0.30, T:0.12
Consensus pattern (19 bp):
TCCGACTCCGGCGACGGAC
Found at i:64080378 original size:38 final size:39
Alignment explanation
Indices: 64080288--64080535 Score: 357
Period size: 39 Copynumber: 6.4 Consensus size: 39
64080278 TGGATGATAA
* * *
64080288 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TC
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-TATC
64080328 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATAT-
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATC
64080366 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATC
64080405 CGGGCTAAGTCCGAAGGCATTTGTGCGAG-TACTATATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATC
64080443 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-C
1 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATC
*
64080482 CGGGCTAAGTCCGAAGGCATTTGAGC-AG-TAGCTATATC
1 CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTA-CTATATC
**
64080520 C-GGCTAAACCCGAAGG
1 CGGGCTAAGTCCGAAGG
64080536 TACTTGGTTG
Statistics
Matches: 196, Mismatches: 6, Indels: 15
0.90 0.03 0.07
Matches are distributed among these distances:
36 2 0.01
37 20 0.10
38 75 0.38
39 82 0.42
40 17 0.09
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATATC
Found at i:64080416 original size:77 final size:77
Alignment explanation
Indices: 64080288--64080535 Score: 371
Period size: 77 Copynumber: 3.2 Consensus size: 77
64080278 TGGATGATAA
* * *
64080288 CGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-TCCGGGCTAAGTCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCGAAGGCATTTGT
64080352 GCGAGTTACTATAT
65 GCGAG-TACTATAT
64080366 CGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGTG
64080430 CGAGTACTATAT
66 CGAGTACTATAT
*
64080442 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-CCGGGCTAAGTCCGAAGGCATTTGA
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGT
64080506 GC-AGTAGCTATAT
65 GCGAGTA-CTATAT
* *
64080519 CCGGCTAA-ACCCGAAGG
1 CGGGCTAAGTCCCGAAGG
64080536 TACTTGGTTG
Statistics
Matches: 160, Mismatches: 6, Indels: 11
0.90 0.03 0.06
Matches are distributed among these distances:
75 8 0.05
76 20 0.12
77 95 0.59
78 37 0.23
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (77 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGTG
CGAGTACTATAT
Found at i:64088478 original size:40 final size:40
Alignment explanation
Indices: 64088377--64088592 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
64088367 TGGATGATAA
** * *
64088377 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
64088417 CCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
64088456 CCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
64088496 CCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
64088536 CCGGGCTAAGTCCCGAAGGCATTTGAGC-AG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
64088575 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
64088593 TACTTGGTTG
Statistics
Matches: 158, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
38 17 0.11
39 41 0.26
40 100 0.63
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:64088600 original size:119 final size:119
Alignment explanation
Indices: 64088377--64088592 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 119
64088367 TGGATGATAA
* * *
64088377 CCGGGCTAAGTCCCGAAGGCATTTGCACTAGTGACTAGTTCCGGGCAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGCACGAGTGACTAGTACCGGGCAAGTCCCGAAGGCATTTGA
**
64088442 GCGAGTTACTATATCCGGGCTAAGTCCCAAAGGCATTGGTGCGAGTTACTATAT
66 GCGAGTTACTATATCCGGGCTAAACCCCAAAGGCATTGGTGCGAGTTACTATAT
** * *
64088496 CCGGGCTAAGTCCCGAAGGCATTTGTGCGGGTTACTA-TAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGCACGAGTGACTAGT-ACCGGGC-AAGTCCCGAAGGCATTT
*
64088560 GAGC-AG-TAGCTATATCC-GGCTAAACCCCGAAGG
64 GAGCGAGTTA-CTATATCCGGGCTAAACCCCAAAGG
64088593 TACTTGGTTG
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 16 0.19
119 48 0.57
120 20 0.24
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGCACGAGTGACTAGTACCGGGCAAGTCCCGAAGGCATTTGA
GCGAGTTACTATATCCGGGCTAAACCCCAAAGGCATTGGTGCGAGTTACTATAT
Found at i:64095332 original size:11 final size:11
Alignment explanation
Indices: 64095316--64095342 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
64095306 CGGTTTCAAT
64095316 ATTTTGTAAAG
1 ATTTTGTAAAG
64095327 ATTTTGTAAAG
1 ATTTTGTAAAG
64095338 ATTTT
1 ATTTT
64095343 TTTGTATTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (11 bp):
ATTTTGTAAAG
Found at i:64106398 original size:22 final size:23
Alignment explanation
Indices: 64106355--64106398 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
64106345 CTCTCTCTAG
*
64106355 GGTTAAGGCTTTTATTTTTTTAA
1 GGTTAAGGCTTTTATTTATTTAA
* *
64106378 GGTTAGGGTTTTTA-TTATTTA
1 GGTTAAGGCTTTTATTTATTTA
64106399 GGGTATTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.20, C:0.02, G:0.20, T:0.57
Consensus pattern (23 bp):
GGTTAAGGCTTTTATTTATTTAA
Found at i:64108265 original size:30 final size:30
Alignment explanation
Indices: 64108231--64108293 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
64108221 ATTTAACAAG
* *
64108231 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAACAACAAAATTAA
* *
64108261 CAAATGCCTTTAAAATAACAATAAAATTAA
1 CAAATGCCTCTAAAATAACAACAAAATTAA
64108291 CAA
1 CAA
64108294 TAAAATAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.57, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAACAACAAAATTAA
Found at i:64108285 original size:11 final size:11
Alignment explanation
Indices: 64108271--64108301 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
64108261 CAAATGCCTT
64108271 TAAAATAACAA
1 TAAAATAACAA
64108282 TAAAATTAACAA
1 TAAAA-TAACAA
64108294 TAAAATAA
1 TAAAATAA
64108302 GTTTTATACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (11 bp):
TAAAATAACAA
Found at i:64109834 original size:2 final size:2
Alignment explanation
Indices: 64109827--64109869 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
64109817 TTCTTCTTCT
64109827 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
64109869 T
1 T
64109870 TTTATTTCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:64111448 original size:52 final size:52
Alignment explanation
Indices: 64111370--64111472 Score: 197
Period size: 52 Copynumber: 2.0 Consensus size: 52
64111360 TTTATGCATG
64111370 ACACATTTACTCATGCTTTCAAGTATCATCTTTAAATTAAAATTATATATTA
1 ACACATTTACTCATGCTTTCAAGTATCATCTTTAAATTAAAATTATATATTA
*
64111422 ACACATTTACTCATGCTTTCAAGTATCATCTTTACATTAAAATTATATATT
1 ACACATTTACTCATGCTTTCAAGTATCATCTTTAAATTAAAATTATATATT
64111473 TACTCAAACT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.43
Consensus pattern (52 bp):
ACACATTTACTCATGCTTTCAAGTATCATCTTTAAATTAAAATTATATATTA
Found at i:64117595 original size:38 final size:38
Alignment explanation
Indices: 64117551--64117626 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
64117541 TTTGATTTCT
64117551 TTAAAGAAGATGATTGTGATTTGTTCATAAATCTTTTA
1 TTAAAGAAGATGATTGTGATTTGTTCATAAATCTTTTA
*
64117589 TTAAAGAAGATGATTGTGATTTGTTCATAAATGTTTTA
1 TTAAAGAAGATGATTGTGATTTGTTCATAAATCTTTTA
64117627 CCAGAAATTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (38 bp):
TTAAAGAAGATGATTGTGATTTGTTCATAAATCTTTTA
Found at i:64121765 original size:45 final size:46
Alignment explanation
Indices: 64121678--64121765 Score: 117
Period size: 45 Copynumber: 1.9 Consensus size: 46
64121668 TGAGCCATGT
*
64121678 ATCAAGAAGCTTATCGGGGCTAAACAGGAAACTCATAAGAGTTTTA
1 ATCAAGAAGCTTATCGGAGCTAAACAGGAAACTCATAAGAGTTTTA
* * *
64121724 ATCAAGAAGCTTAT-TGAGCTTAACAGGTAACTC-TAATGAGTT
1 ATCAAGAAGCTTATCGGAGCTAAACAGGAAACTCATAA-GAGTT
64121766 ATTATTAGGG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
44 3 0.08
45 20 0.54
46 14 0.38
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (46 bp):
ATCAAGAAGCTTATCGGAGCTAAACAGGAAACTCATAAGAGTTTTA
Found at i:64125154 original size:19 final size:19
Alignment explanation
Indices: 64125130--64125170 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
64125120 TGTTAAATTA
*
64125130 AATTAAT-TGAATGCAAATG
1 AATTAATCTAAATGC-AATG
64125149 AATTAATCTAAATGCAATG
1 AATTAATCTAAATGCAATG
64125168 AAT
1 AAT
64125171 GAAATGAGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.49, C:0.07, G:0.12, T:0.32
Consensus pattern (19 bp):
AATTAATCTAAATGCAATG
Found at i:64130650 original size:40 final size:40
Alignment explanation
Indices: 64130433--64130650 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
64130423 AAGCCAAGTA
* * * *
64130433 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* ** *
64130472 CCTTCGGGACGTAGCCCAAATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
64130512 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCATGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
64130552 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
64130592 CCTTCAGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
64130632 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
64130651 TTATCATCCA
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 13 0.08
40 146 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:64138581 original size:40 final size:40
Alignment explanation
Indices: 64138534--64138737 Score: 254
Period size: 40 Copynumber: 5.1 Consensus size: 40
64138524 CGGGGTTTAA
*
64138534 CCGGATATAGGT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATA-GTAACTCGCTCGAATGCCTTCGGGACTTAGC
*
64138574 CCGGATATAGTAACTCGCACGAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCTCGAATGCCTTCGGGACTTAGC
*
64138614 CCGGATATAGTAACTCG-TACGAATGCCTTCGGGATTTAGC
1 CCGGATATAGTAACTCGCT-CGAATGCCTTCGGGACTTAGC
* * * *
64138654 CCAGATATAGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCTCGAATGCCTTCGGGACTTAGC
* * *
64138694 CCGGA-ACTAGTCACTAG-TGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCT-CGAATGCCTTCGGGACTTAGC
64138734 CCGG
1 CCGG
64138738 TTATCATCCA
Statistics
Matches: 145, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
39 3 0.02
40 142 0.98
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCTCGAATGCCTTCGGGACTTAGC
Found at i:64146555 original size:21 final size:22
Alignment explanation
Indices: 64146526--64146572 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
64146516 TAGATAGATA
64146526 ACCAGCCCAGT-CCAACCAACAC
1 ACCAGCCCA-TACCAACCAACAC
*
64146548 ACCA-CCCATACCAACCAGCAC
1 ACCAGCCCATACCAACCAACAC
64146569 ACCA
1 ACCA
64146573 TGTGGGGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 1 0.04
21 18 0.78
22 4 0.17
ACGTcount: A:0.38, C:0.51, G:0.06, T:0.04
Consensus pattern (22 bp):
ACCAGCCCATACCAACCAACAC
Found at i:64149552 original size:22 final size:22
Alignment explanation
Indices: 64149526--64149570 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
64149516 ATTATGTGTA
64149526 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
64149548 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
64149570 T
1 T
64149571 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:64152490 original size:39 final size:40
Alignment explanation
Indices: 64152324--64152507 Score: 255
Period size: 40 Copynumber: 4.6 Consensus size: 40
64152314 GCTACTGGCT
* * *
64152324 CAAATACCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
64152364 CAATTGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
64152404 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** * * *
64152444 CAAATGCCTTCGGGACTT-GCCCGGAACTAGTCACTAGCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
64152483 CAGATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
64152508 TTATCATCCA
Statistics
Matches: 131, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
39 33 0.25
40 96 0.73
41 2 0.02
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:64160377 original size:40 final size:39
Alignment explanation
Indices: 64160333--64160565 Score: 270
Period size: 40 Copynumber: 5.9 Consensus size: 39
64160323 GGATATAGCT
* * * *
64160333 ACTCGCTCAAATACCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
* *
64160373 ACTCGCACAATTGCCTTCGGGACTTAGCCCGAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTTAGTA
*
64160413 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* *
64160453 ACTCGGACAAATGCCTTCGGGACTTAGCCCGAATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTTAGTA
** *
64160493 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
* ** *
64160532 ACTAGTGCAGATGCCTTCGGGACTTAGCCCGGTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT
64160566 ATCATCCAAA
Statistics
Matches: 165, Mismatches: 23, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
39 30 0.18
40 133 0.81
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:64160468 original size:80 final size:80
Alignment explanation
Indices: 64160333--64160562 Score: 313
Period size: 80 Copynumber: 2.9 Consensus size: 80
64160323 GGATATAGCT
* * * * * *
64160333 ACTCGCTCAAATACCTTCGGGACATAGCCCGG-TTAGAGTAACTCGCACAATTGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGGACAAATGCCTTCGGGACT
64160397 TAGCCCGAATTTAGTA
65 TAGCCCGAATTTAGTA
*
64160413 ACTCGCACAAATGCCTTCGAGACTTAGCCCGGATTTAGTAACTCGGACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGGACAAATGCCTTCGGGACTT
64160478 AGCCCGAATTTAGTA
66 AGCCCGAATTTAGTA
** * * *
64160493 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTCACTAGTG-CAGATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCG-GACAAATGCCTTCGGGACT
64160556 TAGCCCG
65 TAGCCCG
64160563 GTTATCATCC
Statistics
Matches: 135, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
79 38 0.28
80 95 0.70
81 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGGACAAATGCCTTCGGGACTT
AGCCCGAATTTAGTA
Done.