Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 195 of 345
Found at i:65851253 original size:94 final size:92
Alignment explanation
Indices: 65851092--65851350 Score: 256
Period size: 94 Copynumber: 2.8 Consensus size: 92
65851082 AGAACTAGTA
* * * ** *
65851092 TAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGAGGTGTTTGGGAC
1 TAAGACCATGTCT-GGACATGGCATCGA-ATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
*
65851157 ATGCATCAGCC-GCATCATGATAGCCCGTG
64 ATGCATCAGCCTG-ATCATGATAGCCAGTG
* * * * *
65851186 TAAGACCACGTCTAGGACATGGCATCAATATAGAGGTGAGTGCCAGTGTAAGACATGTCTCGGAC
1 TAAGACCATGTCT-GGACATGGCATCGA-ATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGAC
* * *
65851251 ATGCATCGGCCTTGATGATGTTAGCCAGTG
64 ATGCATCAGCC-TGATCATGATAGCCAGTG
* * * **
65851281 TAAGA-CATGTCTGGACAT-TCATCGACTA-AGTTTCGTGCTAGTGTAAGACATGTCTGGGACAT
1 TAAGACCATGTCTGGACATGGCATCGAATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACAT
65851343 GCATCAGC
66 GCATCAGC
65851351 ACGTATACAC
Statistics
Matches: 136, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
90 36 0.26
91 2 0.01
92 5 0.04
93 6 0.04
94 68 0.50
95 18 0.13
96 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (92 bp):
TAAGACCATGTCTGGACATGGCATCGAATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACAT
GCATCAGCCTGATCATGATAGCCAGTG
Found at i:65858737 original size:47 final size:46
Alignment explanation
Indices: 65858567--65858883 Score: 173
Period size: 47 Copynumber: 6.7 Consensus size: 46
65858557 GGGTAATGTA
* * * *
65858567 AGAGCCAGTATAAGACCCTGTCTGGGACATGGCATCGGCATTGAGACT-
1 AGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGAGA-TG
* * *
65858615 AGGGCTAGTGTAAGATATGTCTGGGACATGCATCGG--TAGCATCATG
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATAG-A-GATG
* * * * * *
65858661 ATAACCT-GTGTAAGACCACGTTTAGGACATGGCATCGGCATAGAGGTG
1 A-GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGAGATG
* *
65858709 AGGGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTA-ATGATG
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CATAGA-GATG
** * * ** * *
65858756 CTAGCCAGTGTAAGA-AGTGTCTGGGAAATGCATTTGC-TA-AGTTT
1 AGAGCTAGTGTAAGACA-TGTCTGGGACATGCATCGGCATAGAGATG
* * * * * *
65858800 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGTATACACG
1 AGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCA--TAGAGATG
*
65858848 AGAGCTAGTGTAAGGCCATGTCTGGGACATGGCATC
1 AGAGCTAGTGTAA-GACATGTCTGGGACAT-GCATC
65858884 TGCTTCGATA
Statistics
Matches: 203, Mismatches: 47, Indels: 36
0.71 0.16 0.13
Matches are distributed among these distances:
44 32 0.16
45 6 0.03
46 27 0.13
47 72 0.35
48 42 0.21
49 16 0.08
50 8 0.04
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATAGAGATG
Found at i:65859823 original size:55 final size:55
Alignment explanation
Indices: 65859708--65859824 Score: 130
Period size: 55 Copynumber: 2.1 Consensus size: 55
65859698 TCAGTATTGT
* * * *
65859708 CCACGGTTAGGCCACACGGGCGTGTGCCATAGCCGTGTCTATAAGTCAGTATTGA
1 CCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCCTATAAGTCAGTAGTCA
* * * *
65859763 CCACGGGTAGGCCACACGGGCGTGTGTCATGGTCGTGCCCTA-AAGTTAGT-GTCA
1 CCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTG-CCTATAAGTCAGTAGTCA
65859817 CACACGGG
1 C-CACGGG
65859825 CTGAGGACAT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
54 3 0.06
55 46 0.88
56 3 0.06
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21
Consensus pattern (55 bp):
CCACGGGTAGGCCACACGGGCGTGTGCCATAGCCGTGCCTATAAGTCAGTAGTCA
Found at i:65864820 original size:41 final size:41
Alignment explanation
Indices: 65864693--65864878 Score: 243
Period size: 41 Copynumber: 4.6 Consensus size: 41
65864683 CTCGCACAAG
* * * * * * *
65864693 GCCTTCGGGTCTTAACCCGAATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
65864733 GCCTTCGGGACTTAGCTCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
65864773 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
65864814 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
65864855 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
65864879 CATTCGAGTA
Statistics
Matches: 130, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 3 0.02
40 56 0.43
41 68 0.52
42 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:65864822 original size:81 final size:82
Alignment explanation
Indices: 65864723--65864876 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 82
65864713 ATATGGTCAC
* * * *
65864723 TAGCATAAATGCCTTCGGGACTTAGCTCGGATATAGTCGC-TAGCACAAATGCCTTC-GGATCTT
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGA-CTT
*
65864786 AGTCCGGATGTAGTCGCT
65 AGCCCGGATGTAGTCGCT
65864804 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
1 TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
65864869 GCCCGGAT
66 GCCCGGAT
65864877 ATCATTCGAG
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 37 0.56
82 26 0.39
83 3 0.05
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (82 bp):
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTA
GCCCGGATGTAGTCGCT
Found at i:65896789 original size:46 final size:45
Alignment explanation
Indices: 65896737--65896911 Score: 199
Period size: 46 Copynumber: 3.8 Consensus size: 45
65896727 TGTAACCCGC
*
65896737 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* *
65896783 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * *
65896829 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
*
65896876 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
65896912 ATGCTCAATC
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 70 0.65
47 35 0.32
48 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:65896857 original size:93 final size:93
Alignment explanation
Indices: 65896745--65896915 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
65896735 GCCCATAAGT
* * *
65896745 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
65896810 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
65896838 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
65896903 CGAGTTCGGATGC
66 CGAGCTCGGATGC
65896916 TCAATCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:65901545 original size:28 final size:29
Alignment explanation
Indices: 65901492--65901546 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
65901482 TACTATGGTT
65901492 TTCACATGGCCAAGCACACGCCCGTGTCC
1 TTCACATGGCCAAGCACACGCCCGTGTCC
*
65901521 TTCACATGGCCTAG-ACACGCCCGTGT
1 TTCACATGGCCAAGCACACGCCCGTGT
65901547 GGTCGCCCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.20, C:0.38, G:0.22, T:0.20
Consensus pattern (29 bp):
TTCACATGGCCAAGCACACGCCCGTGTCC
Found at i:65911761 original size:40 final size:40
Alignment explanation
Indices: 65911663--65911924 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
65911653 TCCTCGTTCA
* * * * *
65911663 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
65911702 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
65911742 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
65911782 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
65911822 AATGCCTTCGGGACTTAACCCGGA-TTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
65911861 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
65911901 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
65911925 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
38 3 0.02
39 64 0.33
40 121 0.62
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:65911805 original size:80 final size:79
Alignment explanation
Indices: 65911663--65911924 Score: 307
Period size: 79 Copynumber: 3.3 Consensus size: 79
65911653 TCCTCGTTCA
* * * * *
65911663 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
65911728 TAACAACTCGCACG
66 TAACAACTCGCACG
* *
65911742 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
*
65911807 TTAATAACTCGCACG
65 TTAACAACTCGCACG
* * *
65911822 AATGCCTTCGGGACTTAACCCGGA-TTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * *
65911885 TATATTC-ACTTAGCAC-
64 TTTA-ACAAC-TCGCACG
* *
65911901 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
65911925 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
78 3 0.02
79 90 0.57
80 66 0.42
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:65911857 original size:119 final size:119
Alignment explanation
Indices: 65911663--65911924 Score: 314
Period size: 119 Copynumber: 2.2 Consensus size: 119
65911653 TCCTCGTTCA
* * *
65911663 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
* ** * *
65911728 TAACAACTCGCACGACTGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* * *
65911781 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACAC-AATGCCTTCGGGACATAACCCGGA
** * * * *
65911846 -TTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
*
65911901 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
65911925 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
118 3 0.02
119 90 0.74
120 28 0.23
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:65919269 original size:40 final size:40
Alignment explanation
Indices: 65919172--65919433 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
65919162 TCCTCGTTCA
* * * * *
65919172 AATGCCTTC-GGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
65919210 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
65919250 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
65919290 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
65919330 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
65919370 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
65919410 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
65919434 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
38 9 0.05
39 27 0.14
40 153 0.78
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:65926115 original size:15 final size:14
Alignment explanation
Indices: 65926097--65926151 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 14
65926087 TCCATAACGG
65926097 AGAAATCCAAAATA
1 AGAAATCCAAAATA
*
65926111 TAGAAATCCAACATAA
1 -AGAAATCCAAAAT-A
*
65926127 AGAAATCCAAAACA
1 AGAAATCCAAAATA
65926141 AGAAAATCCAA
1 AG-AAATCCAA
65926152 TCACGATACC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
14 3 0.09
15 31 0.89
16 1 0.03
ACGTcount: A:0.62, C:0.18, G:0.07, T:0.13
Consensus pattern (14 bp):
AGAAATCCAAAATA
Found at i:65938040 original size:21 final size:19
Alignment explanation
Indices: 65937998--65938040 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
65937988 TTTGTTTATC
* *
65937998 TTTCTTTTCTTCCTGCCAA
1 TTTCTATTCTTCCTACCAA
65938017 TTTCTATTCTTCTCTACACAA
1 TTTCTATTCTTC-CTAC-CAA
65938038 TTT
1 TTT
65938041 TCTTTGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 3 0.15
21 6 0.30
ACGTcount: A:0.16, C:0.28, G:0.02, T:0.53
Consensus pattern (19 bp):
TTTCTATTCTTCCTACCAA
Found at i:65941252 original size:47 final size:47
Alignment explanation
Indices: 65941179--65941525 Score: 586
Period size: 47 Copynumber: 7.4 Consensus size: 47
65941169 GGTGTACAAG
* * *
65941179 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
65941226 GTGTGTATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
65941273 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * *
65941320 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
65941367 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
65941414 GTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* *
65941461 GTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
65941508 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
65941526 TCCCGAAGGG
Statistics
Matches: 285, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 285 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:65943484 original size:29 final size:29
Alignment explanation
Indices: 65943451--65943551 Score: 132
Period size: 29 Copynumber: 3.5 Consensus size: 29
65943441 GAATATGACC
65943451 GGGCCTAATGGGCCATATAAATGTGATTT
1 GGGCCTAATGGGCCATATAAATGTGATTT
* * *
65943480 GGGCCTAATGAGCCATATACAGGTGATTT
1 GGGCCTAATGGGCCATATAAATGTGATTT
* *
65943509 GGGCCTAATGGGCCATATGAATATGA-TT
1 GGGCCTAATGGGCCATATAAATGTGATTT
* *
65943537 GGACTTAATGGGCCA
1 GGGCCTAATGGGCCA
65943552 GATACAGGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 15 0.24
29 47 0.76
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (29 bp):
GGGCCTAATGGGCCATATAAATGTGATTT
Found at i:65943515 original size:58 final size:57
Alignment explanation
Indices: 65943451--65943560 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 57
65943441 GAATATGACC
* * *
65943451 GGGCCTAATGGGCCATATAAATGTGATTTGGGCCTAATGAGCCATATACAGGTGATTT
1 GGGCCTAATGGGCCATATAAATATGA-TTGGACCTAATGAGCCAGATACAGGTGATTT
* * *
65943509 GGGCCTAATGGGCCATATGAATATGATTGGACTTAATGGGCCAGATACAGGT
1 GGGCCTAATGGGCCATATAAATATGATTGGACCTAATGAGCCAGATACAGGT
65943561 ATGCGAAATT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (57 bp):
GGGCCTAATGGGCCATATAAATATGATTGGACCTAATGAGCCAGATACAGGTGATTT
Found at i:65947738 original size:8 final size:8
Alignment explanation
Indices: 65947725--65947760 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
65947715 GGCAAAAGCT
*
65947725 GAAATGAC
1 GAAATGCC
65947733 GAAATGCC
1 GAAATGCC
*
65947741 GAAATGCT
1 GAAATGCC
65947749 GAAATGCC
1 GAAATGCC
65947757 GAAA
1 GAAA
65947761 AGCCAAAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.44, C:0.17, G:0.25, T:0.14
Consensus pattern (8 bp):
GAAATGCC
Found at i:65948025 original size:29 final size:28
Alignment explanation
Indices: 65947968--65948079 Score: 116
Period size: 29 Copynumber: 3.9 Consensus size: 28
65947958 GTGAGCATGA
* * *
65947968 ATATGAATGTGACTGGGCCGAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
65947996 ATATAAATGTGATTTGGGCCTAATGAGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
65948025 ATATACAGGTGATTTGGGCCTAGTGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
65948054 ATATGAATATGATTGGGCTTAATGGG
1 ATATAAATGTGATTGGGCCTAATGGG
65948080 TCAGATGCTG
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
28 23 0.33
29 46 0.67
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:65950472 original size:9 final size:9
Alignment explanation
Indices: 65950458--65950482 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
65950448 TGGATTAAAT
65950458 TGAATGAAA
1 TGAATGAAA
65950467 TGAATGAAA
1 TGAATGAAA
65950476 TGAATGA
1 TGAATGA
65950483 TTGAATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (9 bp):
TGAATGAAA
Found at i:65950888 original size:42 final size:42
Alignment explanation
Indices: 65950809--65950911 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 42
65950799 CCTCGATTGA
* * **
65950809 GATTTACGTATAAGACCATGTGTGGGACATCGACATCG-TATCT
1 GATTT-CGTGTAAGACCATGTCTGGGACAAAGACATCGATAT-T
* *
65950852 GATTTCGTGTAAGACCCTGTCTGGGACAAAGGCATCGATATT
1 GATTTCGTGTAAGACCATGTCTGGGACAAAGACATCGATATT
* *
65950894 GAATTACATGTAAGACCA
1 G-ATTTCGTGTAAGACCA
65950912 CATCCGAGAC
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
42 28 0.57
43 21 0.43
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (42 bp):
GATTTCGTGTAAGACCATGTCTGGGACAAAGACATCGATATT
Found at i:65955827 original size:47 final size:47
Alignment explanation
Indices: 65955690--65956144 Score: 759
Period size: 47 Copynumber: 9.5 Consensus size: 47
65955680 GTGTGTATAC
65955690 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
65955739 GTGAAAGTGTATATATATGGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGT-GATAAGGCCTAATGGCCGATGTGATGAAT
65955787 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955834 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955883 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955932 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955981 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65956028 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * *
65956075 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCC-ATGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
65956121 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
65956145 TCCGAAGGGC
Statistics
Matches: 393, Mismatches: 10, Indels: 9
0.95 0.02 0.02
Matches are distributed among these distances:
46 31 0.08
47 162 0.41
48 46 0.12
49 154 0.39
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:65955868 original size:49 final size:49
Alignment explanation
Indices: 65955690--65956144 Score: 781
Period size: 49 Copynumber: 9.5 Consensus size: 49
65955680 GTGTGTATAC
65955690 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955739 GTGAAAGTGTATATATATG-GATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955787 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955834 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955883 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955932 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65955981 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65956028 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * *
65956075 GTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCC-ATGTGATGGAT
1 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
65956121 GTGAAAGTGTATA-A-ATGTGATAAG
1 GTGAAAGTGTATATATATGTGATAAG
65956145 TCCGAAGGGC
Statistics
Matches: 394, Mismatches: 7, Indels: 13
0.95 0.02 0.03
Matches are distributed among these distances:
46 35 0.09
47 155 0.39
48 40 0.10
49 164 0.42
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:65956317 original size:36 final size:37
Alignment explanation
Indices: 65956262--65956339 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
65956252 CCGAGCTCTA
* *
65956262 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
65956298 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
65956335 AAGAC
1 AAGAC
65956340 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:65957831 original size:40 final size:40
Alignment explanation
Indices: 65957548--65957819 Score: 382
Period size: 40 Copynumber: 6.8 Consensus size: 40
65957538 GAGAATTGAG
65957548 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
65957588 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
65957628 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTACT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
65957668 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
65957708 AGTGATGTATCCGGACTAAGTTCAGAATAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
65957748 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
65957788 GGTGTTATATCCGGGCTAGGTCCCAAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
65957820 ATCATGCTGG
Statistics
Matches: 200, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 200 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:65961475 original size:47 final size:47
Alignment explanation
Indices: 65961398--65962134 Score: 1103
Period size: 47 Copynumber: 15.6 Consensus size: 47
65961388 CAGTGTGTAT
65961398 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
65961447 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
65961494 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
65961543 ATGCT-AAAGTGTATATATATGCGATAAGGCCTAATGGCCGATGTGATGA
1 ATG-TGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
65961592 ATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
65961641 ATGTGAAAGTGTATATATGTGATAAGGCCTAACGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
65961688 ATGTTAAAGTGTATATTTATGTGATAAGGCCTAACGGCCGATGTGATGA
1 ATGTGAAAGTGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATGA
*
65961737 ATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
65961786 ATGTGAAAGTGTATATATATG-T---G-ATAA-GGCCGATATGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
65961827 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
65961874 ATGTGAAGGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
65961921 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
65961968 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
65962015 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
** * * * * * *
65962062 ATGTGAAAGTGTATATATGTG-GCAGGGCTGAGTGGCCAACGCGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGATGTGATGA
*
65962109 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
65962135 TCCCGAAGGG
Statistics
Matches: 644, Mismatches: 28, Indels: 33
0.91 0.04 0.05
Matches are distributed among these distances:
41 33 0.05
42 4 0.01
43 1 0.00
45 1 0.00
46 9 0.01
47 354 0.55
48 3 0.00
49 234 0.36
50 1 0.00
51 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:65961729 original size:194 final size:193
Alignment explanation
Indices: 65961398--65962134 Score: 1150
Period size: 194 Copynumber: 3.9 Consensus size: 193
65961388 CAGTGTGTAT
65961398 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
65961463 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT-TATGTGATAAGGCCTAA
*
65961528 TGGCCGATGTGATGAATGCT-AAAGTGTATATATATGCGATAAGGCCTAATGGCCGATGTGATGA
130 TGGCCGATGTGATGAATG-TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
65961592 ATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
65961657 ATGTGATAAGGCCTAACGGCCGATGTGATGAATGTTAAAGTGTATATTTATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-TTATGTGATAAGGCCTAA
* *
65961722 CGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATGA
130 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
65961786 ATGTGAAAGTGTATATATATGTG---A----TAA-GGCCGATATGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
65961843 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGTATA-TATGTGGTAAGGCCTAAT
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTATGTGATAAGGCCTAAT
65961907 GGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
131 GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
65961968 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
** * *
65962031 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA-TATGTG-GCAGGGCTGAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTATGTGATAAGGCCT-AA
* * * *
65962094 TGGCCAACGCGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
130 TGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
65962135 TCCCGAAGGG
Statistics
Matches: 506, Mismatches: 24, Indels: 32
0.90 0.04 0.06
Matches are distributed among these distances:
180 10 0.02
182 46 0.09
183 1 0.00
184 41 0.08
186 72 0.14
187 11 0.02
188 112 0.22
189 1 0.00
190 2 0.00
191 1 0.00
193 1 0.00
194 207 0.41
195 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (193 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:65962329 original size:37 final size:36
Alignment explanation
Indices: 65962253--65962330 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
65962243 CCGAGCTCTA
* * *
65962253 AAGACCCGATGACTACGCGTGGGGATTTTGCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATGCCGGGT
* *
65962289 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATG-CCGGGT
65962326 AAGAC
1 AAGAC
65962331 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 25 0.69
37 11 0.31
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (36 bp):
AAGACCCGATAACTACGCGTGGAGATTATGCCGGGT
Found at i:65964802 original size:16 final size:18
Alignment explanation
Indices: 65964781--65964813 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
65964771 CATACTAGCT
65964781 CCAAAAT-ATAG-TAGTA
1 CCAAAATGATAGATAGTA
65964797 CCAAAATGATAGATAGT
1 CCAAAATGATAGATAGT
65964814 GTGATGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.24
Consensus pattern (18 bp):
CCAAAATGATAGATAGTA
Found at i:65965376 original size:41 final size:42
Alignment explanation
Indices: 65965302--65965408 Score: 112
Period size: 41 Copynumber: 2.6 Consensus size: 42
65965292 TTTATCAAAC
* * **
65965302 CACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAGT-TCA-TT
1 CACCGGTATTTAGCCTGCTAGGCTCGAAACCCGA-TATCATTT
* *
65965343 CACCGGTATTTCGCCTGCTAGGCTCGAAGCCCGATATCATTT
1 CACCGGTATTTAGCCTGCTAGGCTCGAAACCCGATATCATTT
*
65965385 CA-CGGTATGATAGCCTGCTAGGCT
1 CACCGGTAT-TTAGCCTGCTAGGCT
65965409 TAAAGGCCCG
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
40 1 0.02
41 37 0.67
42 17 0.31
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (42 bp):
CACCGGTATTTAGCCTGCTAGGCTCGAAACCCGATATCATTT
Found at i:65966459 original size:4 final size:4
Alignment explanation
Indices: 65966450--65966474 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
65966440 ATTAAAACAT
65966450 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
65966475 CAAATTCGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:65973153 original size:27 final size:27
Alignment explanation
Indices: 65973120--65973394 Score: 390
Period size: 27 Copynumber: 10.2 Consensus size: 27
65973110 TTAGTTTACC
65973120 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65973147 AATTTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
65973174 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
65973201 AAATTACCAAAATACCCTTAGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
65973228 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
65973255 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
65973282 AAATT-CCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
65973308 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
65973335 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
65973362 AAATTACCAAAATACCTCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
65973389 AAATTA
1 AAATTA
65973395 TTGAAATACC
Statistics
Matches: 216, Mismatches: 31, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
26 22 0.10
27 194 0.90
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:65973418 original size:134 final size:134
Alignment explanation
Indices: 65973155--65973420 Score: 381
Period size: 134 Copynumber: 2.0 Consensus size: 134
65973145 TAAATTTACT
* *
65973155 AAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTT
1 AAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT
* * **
65973220 AGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATAAAA
66 AGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTTCGCCTATAAAA
65973285 TTCC
131 TTCC
* *
65973289 AAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCT
1 AAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT
** * * * * *
65973354 AGTTTGTAAAATTACCAAAATACCTCTGATTTGTGAAATTATTGAAATACCC-TCGACCTGTAAA
66 AGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTTCG-CCTATAAA
65973418 ATT
130 ATT
65973421 ATTGAAATAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
133 2 0.02
134 114 0.98
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (134 bp):
AAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT
AGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCTTCGCCTATAAAA
TTCC
Found at i:65973512 original size:27 final size:27
Alignment explanation
Indices: 65973120--65973514 Score: 279
Period size: 27 Copynumber: 14.7 Consensus size: 27
65973110 TTAGTTTACC
*
65973120 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * *
65973147 AATTTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
*
65973174 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* **
65973201 AAATTACCAAAATACCCT-TAGTTTACA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
65973228 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * *
65973255 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
65973282 AAATT-CCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
65973308 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
65973335 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
*
65973362 AAATTACCAAAATA-CCTCTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
*** **
65973389 AAATTATTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
65973416 AAATTATTGAAATACCCTCGAATTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * **
65973443 AAATTACCAAAGTACCTTTGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** **
65973470 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
65973497 AAATTACCAAAATACCCT
1 AAATTACCAAAATACCCT
65973515 TGTAGGGTAG
Statistics
Matches: 296, Mismatches: 57, Indels: 30
0.77 0.15 0.08
Matches are distributed among these distances:
25 1 0.00
26 22 0.07
27 267 0.90
28 6 0.02
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:65973531 original size:27 final size:27
Alignment explanation
Indices: 65973501--65973674 Score: 177
Period size: 27 Copynumber: 6.1 Consensus size: 27
65973491 TTTACAAAAT
* *
65973501 TACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
65973528 TACCGAAATACTAAAATACCCCTGTAGGGTAGAAA
1 TACCGAAATAC--------CCCTGTAGGGTAGAAA
*
65973563 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
65973590 TACTGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
65973617 TATCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * * *
65973644 TACTGAAATACTCCTGTAAGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
65973671 TACC
1 TACC
65973675 TAGGGTGTTA
Statistics
Matches: 124, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
27 98 0.79
35 26 0.21
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAA
Found at i:65973554 original size:35 final size:35
Alignment explanation
Indices: 65973505--65973573 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
65973495 CAAAATTACC
*
65973505 AAAATACCCTTGTAGGGTAGAAATACCGAAATACT
1 AAAATACCCCTGTAGGGTAGAAATACCGAAATACT
65973540 AAAATACCCCTGTAGGGTAGAAATACCGAAATAC
1 AAAATACCCCTGTAGGGTAGAAATACCGAAATAC
65973574 CCCTGTAGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.20
Consensus pattern (35 bp):
AAAATACCCCTGTAGGGTAGAAATACCGAAATACT
Found at i:65973608 original size:54 final size:53
Alignment explanation
Indices: 65973536--65973674 Score: 215
Period size: 54 Copynumber: 2.6 Consensus size: 53
65973526 AATACCGAAA
*
65973536 TACTAAAATACCCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATA-CCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAT
*
65973590 TACTGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCC-TGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAT
* *
65973644 TACTGAAATACTCCTGTAAGGTAGAATTACC
1 TACTGAAATAC-CCTGTAGGGTAGAAATACC
65973675 TAGGGTGTTA
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
53 3 0.04
54 73 0.94
55 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (53 bp):
TACTGAAATACCCTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAT
Found at i:65974208 original size:6 final size:6
Alignment explanation
Indices: 65974177--65974279 Score: 84
Period size: 6 Copynumber: 16.8 Consensus size: 6
65974167 TTGCATTCAC
* * *
65974177 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
65974226 ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTA ATTCTG ATTTTC ATTTTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
65974275 ATTCT
1 ATTCT
65974280 AGTTTTGATA
Statistics
Matches: 77, Mismatches: 14, Indels: 12
0.75 0.14 0.12
Matches are distributed among these distances:
5 3 0.04
6 66 0.86
7 6 0.08
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:65974250 original size:49 final size:49
Alignment explanation
Indices: 65974177--65974279 Score: 143
Period size: 49 Copynumber: 2.1 Consensus size: 49
65974167 TTGCATTCAC
* * *
65974177 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTAATTCTGATTCTAATTCTG
* * * *
65974226 ATTCTGATTCTGATTCTGTCACCTGATTCTAATTCTGATTTTCATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTAATTCTGATTCTAATTCTG
65974275 ATTCT
1 ATTCT
65974280 AGTTTTGATA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (49 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTAATTCTGATTCTAATTCTG
Found at i:65975967 original size:45 final size:45
Alignment explanation
Indices: 65975866--65975996 Score: 146
Period size: 45 Copynumber: 3.0 Consensus size: 45
65975856 AAACCCGAGT
* * * *
65975866 TCAT-TCACCAGC-TTTTCGCCTACTAGGCTCGAA-GCCCG-ATA
1 TCATCTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
* *
65975907 TCATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCATCTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
* *
65975952 GT-ATCTCACCAGCATTATAGCCTGCTACGCTCAAAGGCCCAAATA
1 -TCATCTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
65975997 ATACTGTACG
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
41 4 0.05
42 7 0.09
43 17 0.22
44 5 0.07
45 42 0.55
46 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (45 bp):
TCATCTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
Found at i:65979593 original size:40 final size:39
Alignment explanation
Indices: 65979403--65979586 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
65979393 CGAATGATGT
* * *
65979403 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
65979443 CCGGACTAAGAT-CCAAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
65979483 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
65979521 TCTGGGTTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
65979562 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
65979587 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:65979608 original size:79 final size:79
Alignment explanation
Indices: 65979458--65979619 Score: 186
Period size: 79 Copynumber: 2.1 Consensus size: 79
65979448 CTAAGATCCA
* **
65979458 AAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
* *
65979523 TGGGTTAAGTCCCG
66 TCGGTTAAATCCCG
* * * *
65979537 AAGGCATTTTTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAA
*
65979600 ATC-CGGTTAAATTCCG
63 ATCTCGGTTAAATCCCG
65979616 AAGG
1 AAGG
65979620 TACGTGATTC
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.64
80 23 0.33
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAATC
TCGGTTAAATCCCG
Found at i:65987564 original size:40 final size:39
Alignment explanation
Indices: 65987480--65987664 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 39
65987470 TCGAATGATG
* *
65987480 TCCGGGCTAAGTTCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGC-GAGTTACTAAT
*
65987519 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAT
* *
65987560 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT-AAT
*
65987600 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAT
* *
65987638 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
65987665 AATGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 84 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:65989644 original size:6 final size:6
Alignment explanation
Indices: 65989633--65989657 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
65989623 ACTCAGTGCC
65989633 ATTCTG ATTCTG ATTCTG ATTCTG A
1 ATTCTG ATTCTG ATTCTG ATTCTG A
65989658 ATTTCAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:65993320 original size:79 final size:79
Alignment explanation
Indices: 65993189--65993346 Score: 307
Period size: 79 Copynumber: 2.0 Consensus size: 79
65993179 CGGAATGTGT
65993189 AAGTGTTGATATTAGATGGTTATCGATTTGGTTCAATTATTGTGAGCTGATCTATTAACATTTGA
1 AAGTGTTGATATTAGATGGTTATCGATTTGGTTCAATTATTGTGAGCTGATCTATTAACATTTGA
65993254 TTATAGGAGAAATC
66 TTATAGGAGAAATC
*
65993268 AAGTGTTGATATTAGATGGTTCTCGATTTGGTTCAATTATTGTGAGCTGATCTATTAACATTTGA
1 AAGTGTTGATATTAGATGGTTATCGATTTGGTTCAATTATTGTGAGCTGATCTATTAACATTTGA
65993333 TTATAGGAGAAATC
66 TTATAGGAGAAATC
65993347 GTTTAGGAGA
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (79 bp):
AAGTGTTGATATTAGATGGTTATCGATTTGGTTCAATTATTGTGAGCTGATCTATTAACATTTGA
TTATAGGAGAAATC
Found at i:65993600 original size:17 final size:17
Alignment explanation
Indices: 65993578--65993635 Score: 98
Period size: 17 Copynumber: 3.4 Consensus size: 17
65993568 GGTTGAAGTT
*
65993578 GGGCCCAATGGGCTTTA
1 GGGCCCAATGGGCTTTC
*
65993595 GGGCCCAATGGGCTGTC
1 GGGCCCAATGGGCTTTC
65993612 GGGCCCAATGGGCTTTC
1 GGGCCCAATGGGCTTTC
65993629 GGGCCCA
1 GGGCCCA
65993636 TTTGGGTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.14, C:0.29, G:0.38, T:0.19
Consensus pattern (17 bp):
GGGCCCAATGGGCTTTC
Found at i:65994045 original size:20 final size:20
Alignment explanation
Indices: 65993969--65994044 Score: 125
Period size: 20 Copynumber: 3.8 Consensus size: 20
65993959 ACATGGTTGA
65993969 TATGATATGCACATGACATG
1 TATGATATGCACATGACATG
65993989 TATGATATGCACATGACATG
1 TATGATATGCACATGACATG
*
65994009 TATGATATGCACATGATATG
1 TATGATATGCACATGACATG
* *
65994029 TATGAAATGCTCATGA
1 TATGATATGCACATGA
65994045 TGTATTCATA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.32
Consensus pattern (20 bp):
TATGATATGCACATGACATG
Found at i:65994126 original size:26 final size:26
Alignment explanation
Indices: 65994097--65994165 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
65994087 GAGGAAGTGC
65994097 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
65994123 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
65994149 AAAAGGGCTT-TGCCCCA
1 AAAAGGGCTTATGCCCCA
65994166 AAAGGGCTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 7 0.16
26 36 0.84
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:65994170 original size:16 final size:16
Alignment explanation
Indices: 65994149--65994181 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
65994139 CAGTTTATTG
65994149 AAAAGGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
65994165 AAAAGGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
65994181 A
1 A
65994182 GTTATTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.18
Consensus pattern (16 bp):
AAAAGGGCTTTGCCCC
Found at i:66002197 original size:25 final size:26
Alignment explanation
Indices: 66002123--66002232 Score: 122
Period size: 26 Copynumber: 4.4 Consensus size: 26
66002113 GGAGGAAGTG
*
66002123 GAAAAGGGCTTATGCCCTAGTTTATT
1 GAAAAGGGCTTATGCCCCAGTTTATT
66002149 GAAAAGGGCTTATGCCCCAGTTTATT
1 GAAAAGGGCTTATGCCCCAGTTTATT
* *
66002175 GAAAAGGACTT-TGCCCCAATTTA-T
1 GAAAAGGGCTTATGCCCCAGTTTATT
* * *
66002199 CAAAAGTGCTT-TTCCCCAG-TTATT
1 GAAAAGGGCTTATGCCCCAGTTTATT
66002223 -AAAAGAGGCT
1 GAAAAG-GGCT
66002233 AGGCCTCTAG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.11
24 19 0.26
25 11 0.15
26 35 0.48
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (26 bp):
GAAAAGGGCTTATGCCCCAGTTTATT
Found at i:66008901 original size:27 final size:27
Alignment explanation
Indices: 66008802--66008914 Score: 104
Period size: 27 Copynumber: 4.2 Consensus size: 27
66008792 CAGCATGGCT
* * *
66008802 ACCAGAATAGATAA-TGTGACAGAGTC
1 ACCAGAACAGATAATTGTGGCAGAGCC
* *
66008828 ATCAGATACAGATAATCGTGGCAGAGCC
1 ACCAGA-ACAGATAATTGTGGCAGAGCC
*
66008856 ACCAGAACAGAT-ATATGTGGTAGAGCC
1 ACCAGAACAGATAAT-TGTGGCAGAGCC
* * * *
66008883 ACCTGATCAGATAATTGTGGCATAGCG
1 ACCAGAACAGATAATTGTGGCAGAGCC
66008910 ACCAG
1 ACCAG
66008915 GACGTTTCCT
Statistics
Matches: 69, Mismatches: 14, Indels: 7
0.77 0.16 0.08
Matches are distributed among these distances:
26 7 0.10
27 46 0.67
28 16 0.23
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.19
Consensus pattern (27 bp):
ACCAGAACAGATAATTGTGGCAGAGCC
Found at i:66011690 original size:49 final size:49
Alignment explanation
Indices: 66011618--66011805 Score: 223
Period size: 49 Copynumber: 3.8 Consensus size: 49
66011608 TGAGGTCACG
* *
66011618 TGTGTAGTACTAAGTGCTGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
66011667 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
* *
66011718 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * *
66011767 TGTGTAGTAGTAAGTGCGGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
66011806 GCTTCGGCTA
Statistics
Matches: 114, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 73 0.64
50 2 0.02
51 39 0.34
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:66011789 original size:100 final size:100
Alignment explanation
Indices: 66011613--66011800 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
66011603 TATTGTGAGG
* * *
66011613 TCACGTGTGTAGTACTAAGTGCTGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
66011678 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
* *
66011713 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTATTGGTCGCATGTGTAGTAGT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
*
66011778 AAGTGCGGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
66011801 AGATAGCTTC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:66020049 original size:23 final size:23
Alignment explanation
Indices: 66020010--66020165 Score: 63
Period size: 23 Copynumber: 6.8 Consensus size: 23
66020000 CATTTAAGTA
*
66020010 CTGCAATTTGA-AGTGTTTAGTTG
1 CTGCAAATTGAGA-TGTTTAGTTG
* *
66020033 CTGGAAATTGAGATGTTTTA-TTT
1 CTGCAAATTGAGATG-TTTAGTTG
* * * ***
66020056 CTGTAAATTGAGGTGTATAAACG
1 CTGCAAATTGAGATGTTTAGTTG
* ** *
66020079 TTGTTAATTGAGATGTTAAAG-TG
1 CTGCAAATTGAGATGTT-TAGTTG
* *
66020102 CTGCAAATT-AAAGTGTTTAAG-TA
1 CTGCAAATTGAGA-TGTTT-AGTTG
*
66020125 CAGCAAATTGA-AGTGTTTAGTTG
1 CTGCAAATTGAGA-TGTTTAGTTG
*
66020148 CTGGAAATTGAGATGTTT
1 CTGCAAATTGAGATGTTT
66020166 TATCACTGTA
Statistics
Matches: 98, Mismatches: 26, Indels: 18
0.69 0.18 0.13
Matches are distributed among these distances:
22 7 0.07
23 83 0.85
24 8 0.08
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.39
Consensus pattern (23 bp):
CTGCAAATTGAGATGTTTAGTTG
Found at i:66020224 original size:23 final size:24
Alignment explanation
Indices: 66020084--66020324 Score: 111
Period size: 23 Copynumber: 10.5 Consensus size: 24
66020074 AAACGTTGTT
66020084 AATTGAGA-TGTTAAAGTGCTGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
* * * *
66020107 AATT-AAAGTGTTTAAGTACAGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
* *
66020130 AATTGA-AGTGTT-TAGTTGCTGGA
1 AATTGAGAGTGTTAAAG-TGCTGCA
** * *
66020153 AATTGAGA-TGTTTTA-TCACTGTA
1 AATTGAGAGTGTTAAAGT-GCTGCA
* **
66020176 AA-TGAG-GTGTATAAA-TGTTGTT
1 AATTGAGAGTGT-TAAAGTGCTGCA
66020198 AATTGAGA-TGTTAAAGTGCTGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
** *
66020221 AATTGA-AGTGTTTAAA-TATTGTA
1 AATTGAGAGTG-TTAAAGTGCTGCA
*
66020244 AATTGA-AGTGTTAAAGTGTTGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
* **
66020267 AATTGA-AGTGTTTAAA-TGTTGTG
1 AATTGAGAGTG-TTAAAGTGCTGCA
* * *
66020290 AGTTGA-ACTGCTAAAGTGCTGCA
1 AATTGAGAGTGTTAAAGTGCTGCA
66020313 AATTGA-AGTGTT
1 AATTGAGAGTGTT
66020325 TAAATGTTGT
Statistics
Matches: 168, Mismatches: 34, Indels: 32
0.72 0.15 0.14
Matches are distributed among these distances:
22 31 0.18
23 123 0.73
24 14 0.08
ACGTcount: A:0.34, C:0.06, G:0.24, T:0.37
Consensus pattern (24 bp):
AATTGAGAGTGTTAAAGTGCTGCA
Found at i:66020233 original size:114 final size:115
Alignment explanation
Indices: 66020002--66020255 Score: 420
Period size: 114 Copynumber: 2.2 Consensus size: 115
66019992 TAAAGCCCCA
* **
66020002 TTTAAGTACTGCAATTTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATTTCTGTAAATTGA
1 TTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAAATTGA
66020067 GGTGTATAAACGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTAAAGTG
66 GGTGTATAAACGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTAAAGTG
*
66020117 TTTAAGTACAGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAAA-TGA
1 TTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAAATTGA
* *
66020181 GGTGTATAAATGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAGTG
66 GGTGTATAAACGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTAAAGTG
* * *
66020231 TTTAAATATTGTAAATTGAAGTGTT
1 TTTAAGTACTGCAAATTGAAGTGTT
66020256 AAAGTGTTGC
Statistics
Matches: 129, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
114 72 0.56
115 57 0.44
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.39
Consensus pattern (115 bp):
TTTAAGTACTGCAAATTGAAGTGTTTAGTTGCTGGAAATTGAGATGTTTTATCACTGTAAATTGA
GGTGTATAAACGTTGTTAATTGAGATGTTAAAGTGCTGCAAATTAAAGTG
Found at i:66020256 original size:46 final size:46
Alignment explanation
Indices: 66020182--66020347 Score: 235
Period size: 46 Copynumber: 3.6 Consensus size: 46
66020172 TGTAAATGAG
* *
66020182 GTGTATAAATGTTGTTAATTG-AGATGTTAAAGTGCTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAG-TGTTAAAGTGCTGCAAATTGAA
* *
66020228 GTGTTTAAATATTGTAAATTGAAGTGTTAAAGTGTTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
* * * *
66020274 GTGTTTAAATGTTGTGAGTTGAACTGCTAAAGTGCTGCAAATTGAA
1 GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
*
66020320 GTGTTTAAATGTTGTAAATTAAAGTGTT
1 GTGTTTAAATGTTGTAAATTGAAGTGTT
66020348 TTAAGAATTG
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 102 0.98
47 2 0.02
ACGTcount: A:0.34, C:0.04, G:0.23, T:0.39
Consensus pattern (46 bp):
GTGTTTAAATGTTGTAAATTGAAGTGTTAAAGTGCTGCAAATTGAA
Found at i:66020338 original size:23 final size:23
Alignment explanation
Indices: 66020172--66020348 Score: 157
Period size: 23 Copynumber: 7.7 Consensus size: 23
66020162 GTTTTATCAC
* *
66020172 TGTAAA-TGAGGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAATGT
* *
66020194 TGTTAATTG-AGATG-TTAAAGTGC
1 TGTAAATTGAAG-TGTTTAAA-TGT
* *
66020217 TGCAAATTGAAGTGTTTAAATAT
1 TGTAAATTGAAGTGTTTAAATGT
66020240 TGTAAATTGAAGTG-TTAAAGTGT
1 TGTAAATTGAAGTGTTTAAA-TGT
*
66020263 TGCAAATTGAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAATGT
* * * * *
66020286 TGTGAGTTGAACTG-CTAAAGTGC
1 TGTAAATTGAAGTGTTTAAA-TGT
*
66020309 TGCAAATTGAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAATGT
*
66020332 TGTAAATTAAAGTGTTT
1 TGTAAATTGAAGTGTTT
66020349 TAAGAATTGG
Statistics
Matches: 121, Mismatches: 25, Indels: 17
0.74 0.15 0.10
Matches are distributed among these distances:
22 19 0.16
23 86 0.71
24 16 0.13
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (23 bp):
TGTAAATTGAAGTGTTTAAATGT
Found at i:66020938 original size:54 final size:55
Alignment explanation
Indices: 66020855--66020968 Score: 176
Period size: 54 Copynumber: 2.1 Consensus size: 55
66020845 GTCGAATCTG
* * *
66020855 ACTTAGGCCACATGGCTAGCCACACGCCCATGTACCTTAGCTGTGCTCAAGCCT-
1 ACTTAGGCCACACGACTAGCCACACGCCCATGTACCTTAGCCGTGCTCAAGCCTA
* *
66020909 ACTTAGGCCACACGACTAGCCACATGCCCATGTACCTTGGCCGTGCTCAAGCCTA
1 ACTTAGGCCACACGACTAGCCACACGCCCATGTACCTTAGCCGTGCTCAAGCCTA
66020964 ACTTA
1 ACTTA
66020969 CAATTGTAGG
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
54 49 0.91
55 5 0.09
ACGTcount: A:0.24, C:0.35, G:0.19, T:0.22
Consensus pattern (55 bp):
ACTTAGGCCACACGACTAGCCACACGCCCATGTACCTTAGCCGTGCTCAAGCCTA
Found at i:66032738 original size:22 final size:21
Alignment explanation
Indices: 66032703--66032751 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
66032693 TTACAAATCA
*
66032703 ATACACAT-CATTTAACATAC
1 ATACTCATACATTTAACATAC
* *
66032723 ATAACTCATACATTTAGCATTC
1 AT-ACTCATACATTTAACATAC
66032745 ATACTCA
1 ATACTCA
66032752 AATACAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 10 0.42
22 12 0.50
ACGTcount: A:0.41, C:0.24, G:0.02, T:0.33
Consensus pattern (21 bp):
ATACTCATACATTTAACATAC
Found at i:66033963 original size:30 final size:30
Alignment explanation
Indices: 66033929--66033989 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
66033919 TTCCCGAGCC
66033929 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
66033959 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
66033989 T
1 T
66033990 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:66034800 original size:64 final size:63
Alignment explanation
Indices: 66034651--66034902 Score: 220
Period size: 68 Copynumber: 3.9 Consensus size: 63
66034641 TACAGATGGT
* ** * * * * *
66034651 ATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTACAAGACAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGCTAC--GAGA-
66034715 TA
62 TA
* * *
66034717 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 --ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * *
66034782 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAATGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGTGGTACTAAGTG--T-ACACCATGTAGACAAGAGAGCTACGAGA
66034847 TA
62 TA
** * *
66034849 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
66034903 CGAACTATAT
Statistics
Matches: 153, Mismatches: 26, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
62 1 0.01
63 18 0.12
64 28 0.18
65 2 0.01
66 28 0.18
67 29 0.19
68 46 0.30
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:66034836 original size:67 final size:63
Alignment explanation
Indices: 66034719--66034902 Score: 208
Period size: 67 Copynumber: 2.9 Consensus size: 63
66034709 AGACATTATG
* * * *
66034719 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGGTACCAGGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* *
66034782 TATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAATGACACCATGTAGACAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGTGGTACCAGGTG--T-ACACCATGTAGACAAGAGAGCTACGAGA
66034847 TA
62 TA
** * * * *
66034849 AACTAGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACCAGGTGTACACCATGTAG-ACAAGAGAGC
66034903 CGAACTATAT
Statistics
Matches: 102, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 28 0.27
66 26 0.25
67 29 0.28
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGGTACCAGGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:66039023 original size:27 final size:27
Alignment explanation
Indices: 66038985--66039080 Score: 149
Period size: 27 Copynumber: 3.6 Consensus size: 27
66038975 GTAGGCTAGT
66038985 ATTACTGAAATACCCCTGTAAGGTAGA
1 ATTACTGAAATACCCCTGTAAGGTAGA
*
66039012 ATTACTGAAATACCCCTGTAGGGTAGA
1 ATTACTGAAATACCCCTGTAAGGTAGA
* *
66039039 ATTACTGAAATGCCCCCGT-AGGATAGA
1 ATTACTGAAATACCCCTGTAAGG-TAGA
66039066 ATTACTGAAATACCC
1 ATTACTGAAATACCC
66039081 TTAATTTAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
26 2 0.03
27 61 0.97
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (27 bp):
ATTACTGAAATACCCCTGTAAGGTAGA
Found at i:66039356 original size:27 final size:27
Alignment explanation
Indices: 66039073--66039351 Score: 201
Period size: 27 Copynumber: 10.4 Consensus size: 27
66039063 AGAATTACTG
* *
66039073 AAATACCCTTAATTTAAAAAATTA-CT
1 AAATACCCTTAATTTACAAAATTACCA
** *
66039099 AAATACCCTTGGTTTACAAAGTTACCA
1 AAATACCCTTAATTTACAAAATTACCA
* *
66039126 AAATACCATTGA-TTAGCAAAATTACCA
1 AAATACCCTTAATTTA-CAAAATTACCA
* * **
66039153 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCTTAATTTACAAAATTACCA
* *
66039180 AAATACCCATAATTTATAAAATTACCA
1 AAATACCCTTAATTTACAAAATTACCA
* * ** **
66039207 AAATACCCCTAAATTGGAAAATTACTG
1 AAATACCCTTAATTTACAAAATTACCA
* **
66039234 AAATACCCTTGATTT-GGAAATTA-CA
1 AAATACCCTTAATTTACAAAATTACCA
*
66039259 GAAATACCCCTAATTTACAAAATTA-CA
1 -AAATACCCTTAATTTACAAAATTACCA
* * *
66039286 GAAATACCATTGACTTT-CAAAAATTACAA
1 -AAATACCCTT-AATTTAC-AAAATTACCA
* ** *
66039315 AAATACCATTGGTTTACAAAATTACCG
1 AAATACCCTTAATTTACAAAATTACCA
66039342 AAATACCCTT
1 AAATACCCTT
66039352 GGTTTGTAGA
Statistics
Matches: 202, Mismatches: 42, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
26 43 0.21
27 134 0.66
28 24 0.12
29 1 0.00
ACGTcount: A:0.45, C:0.19, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATACCCTTAATTTACAAAATTACCA
Found at i:66039510 original size:20 final size:20
Alignment explanation
Indices: 66039485--66039529 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
66039475 GAGTATGTTT
66039485 TGATTGAGAATG-TATGACTG
1 TGATTG-GAATGTTATGACTG
* *
66039505 TGATTGGACTGTTGTGACTG
1 TGATTGGAATGTTATGACTG
66039525 TGATT
1 TGATT
66039530 TGTATGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.22, C:0.07, G:0.31, T:0.40
Consensus pattern (20 bp):
TGATTGGAATGTTATGACTG
Found at i:66039679 original size:41 final size:41
Alignment explanation
Indices: 66039622--66039822 Score: 278
Period size: 41 Copynumber: 4.9 Consensus size: 41
66039612 GAAGAAATTG
* *
66039622 AGGATCGCATGGTTGCTTGACGA-CTGTGGATCTACCGATTA
1 AGGATCGCATGGTTGCTTGACGATC-GTAGATCCACCGATTA
*
66039663 AGGATCGCATGGTTGCTTGACGATCGTGGATCCACCGATTA
1 AGGATCGCATGGTTGCTTGACGATCGTAGATCCACCGATTA
* * *
66039704 AGGATCGCATGGTTGATTGATGATCGTAGATCCACCGATTG
1 AGGATCGCATGGTTGCTTGACGATCGTAGATCCACCGATTA
* * **
66039745 AGGATCGCATGGTTTCTTTACGATCGTAGATCCGTCGATTA
1 AGGATCGCATGGTTGCTTGACGATCGTAGATCCACCGATTA
* *
66039786 AGGATCGCATGGTTGCTTGACTATCGTGGATCCACCG
1 AGGATCGCATGGTTGCTTGACGATCGTAGATCCACCG
66039823 GTGGCTTTTA
Statistics
Matches: 141, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
41 140 0.99
42 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (41 bp):
AGGATCGCATGGTTGCTTGACGATCGTAGATCCACCGATTA
Found at i:66044294 original size:14 final size:15
Alignment explanation
Indices: 66044261--66044315 Score: 94
Period size: 15 Copynumber: 3.7 Consensus size: 15
66044251 TTCGTACTTA
*
66044261 GAGTAGGTGACAAGG
1 GAGTAGGTGACGAGG
66044276 GAGTAGGTGACGA-G
1 GAGTAGGTGACGAGG
66044290 GAGTAGGTGACGAGG
1 GAGTAGGTGACGAGG
66044305 GAGTAGGTGAC
1 GAGTAGGTGAC
66044316 TAGGAAATGA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
14 14 0.37
15 24 0.63
ACGTcount: A:0.29, C:0.07, G:0.49, T:0.15
Consensus pattern (15 bp):
GAGTAGGTGACGAGG
Found at i:66044295 original size:29 final size:29
Alignment explanation
Indices: 66044261--66044320 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
66044251 TTCGTACTTA
66044261 GAGTAGGTGACAAGGGAGTAGGTGACGAG
1 GAGTAGGTGACAAGGGAGTAGGTGACGAG
* *
66044290 GAGTAGGTGACGAGGGAGTAGGTGACTAG
1 GAGTAGGTGACAAGGGAGTAGGTGACGAG
66044319 GA
1 GA
66044321 AATGATCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.48, T:0.15
Consensus pattern (29 bp):
GAGTAGGTGACAAGGGAGTAGGTGACGAG
Found at i:66047000 original size:40 final size:40
Alignment explanation
Indices: 66046918--66047133 Score: 242
Period size: 40 Copynumber: 5.4 Consensus size: 40
66046908 GATGATAACT
* * * *
66046918 GGGCTAAGTCCCAAAGGTATTTTGCGCTAGTGACTAGT-TCC
1 GGGCTAAGTCCCGAAGGCA-TTTGCGCGAGTTACTA-TATCC
* * *
66046959 GGGCTAAGTCCCGAAGGTATTTGCGCGAGTTATTACATCC
1 GGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATCC
*
66046999 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATCC
* * *
66047039 GGGCTAAGTCCCGAAGGCAATTGTGTGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATCC
* *
66047079 GGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGCGCGAGTTA-CTATATCC
* *
66047118 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
66047134 TACTTGGCTT
Statistics
Matches: 156, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 108 0.69
41 18 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGCGCGAGTTACTATATCC
Found at i:66054183 original size:40 final size:40
Alignment explanation
Indices: 66054139--66054287 Score: 194
Period size: 40 Copynumber: 3.7 Consensus size: 40
66054129 GCTACTCGCT
* *
66054139 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAATTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* * *
66054179 CAAATGCCTTCGGGACCTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
66054219 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACT-AGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCA-CA
*
66054259 CAAATGCATTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
66054288 CATCCGGATA
Statistics
Matches: 95, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 93 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:66054238 original size:80 final size:80
Alignment explanation
Indices: 66054106--66054283 Score: 220
Period size: 80 Copynumber: 2.2 Consensus size: 80
66054096 AAACCAAGTA
* * * * *
66054106 CCTTCGGGATTTAG-CCGAATATAGCTACTCGCTCAAATGCCTTTGGGACTTAGCCCGG-TTATA
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
*
66054169 GTAATTCA-CACAAATG
65 GTAACT-AGCACAAATG
*
66054185 CCTTCGGGACCTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
*
66054249 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
*
66054265 CATTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
66054284 TTATCATCCG
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.16
80 70 0.82
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTAGCACAAATG
Found at i:66076739 original size:37 final size:38
Alignment explanation
Indices: 66076664--66076862 Score: 204
Period size: 38 Copynumber: 5.4 Consensus size: 38
66076654 AAACCAAGTA
* * *
66076664 CCTTCGGGATTTAGCCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGATATAG-TACTCGCACAAATG
* *
66076703 CCTT-GGGACTTAGCCCGGTTATAGTAATC-CACAAATG
1 CCTTCGGGACTTAGCCC-GATATAGTACTCGCACAAATG
** *
66076740 CCTTCAAGACCTAGCCCGATATAGTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGATATAGTACTCGCACAAATG
66076778 CCTTCGGGACTTAG-CCGATATAGTACTCAGCACAAATG
1 CCTTCGGGACTTAGCCCGATATAGTACTC-GCACAAATG
*
66076816 -CTTC-GGAC-TAGCCCG-T-TAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGATATAGT-ACTCGCACAAATG
66076850 -CTTC-GGA-TTAGCC
1 CCTTCGGGACTTAGCC
66076863 GTTATCATCC
Statistics
Matches: 139, Mismatches: 14, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
34 25 0.18
35 7 0.05
36 7 0.05
37 39 0.28
38 51 0.37
39 10 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (38 bp):
CCTTCGGGACTTAGCCCGATATAGTACTCGCACAAATG
Found at i:66082318 original size:19 final size:20
Alignment explanation
Indices: 66082294--66082331 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
66082284 GGTACCACCA
66082294 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
66082313 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
66082332 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:66082669 original size:92 final size:93
Alignment explanation
Indices: 66082561--66082730 Score: 252
Period size: 92 Copynumber: 1.8 Consensus size: 93
66082551 GCCCCTAAGT
* * *
66082561 GAACTCGAACTTAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAAATCAGACTCAA-TCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAAATCAGACTCAACTCAA
66082625 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * * *
66082653 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAAATCAGACTCAACTCAA
66082718 CGAGTTCGGATGC
66 CGAGTTCGGATGC
66082731 TCAACCATCC
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
92 51 0.75
93 17 0.25
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAAATCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:66082704 original size:46 final size:46
Alignment explanation
Indices: 66082556--66082727 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
66082546 AAACCGCCCC
* * * * * *
66082556 TAAGTGAACTCGAACTTAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
66082602 TAAATGAAATCAGACTCAA-TCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
66082649 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
66082694 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
66082728 TGCTCAACCA
Statistics
Matches: 99, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 14 0.14
46 55 0.56
47 16 0.16
48 2 0.02
49 4 0.04
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:66083184 original size:30 final size:30
Alignment explanation
Indices: 66083150--66083209 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
66083140 ATTTAATAGG
*
66083150 AACTTTAAAAAAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
66083180 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
66083210 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:66085688 original size:29 final size:29
Alignment explanation
Indices: 66085601--66085688 Score: 142
Period size: 29 Copynumber: 3.1 Consensus size: 29
66085591 GTGAGCATGA
66085601 ATAT-AATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * *
66085629 ACATAAATGTGATTTAGGCCTAAAGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
66085658 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
66085687 AT
1 AT
66085689 GTGAATATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 3 0.06
29 50 0.94
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:66089323 original size:24 final size:24
Alignment explanation
Indices: 66089247--66089313 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
66089237 CTATCTGGAG
66089247 CTTCCCGATATGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
*
66089271 CTTCCCGATAAGGTTCTTTGTGAA
1 CTTCCCGATATGGTTCTTTGTGAA
*
66089295 CTTCCCGATTATGGCTCTT
1 CTTCCCGA-TATGGTTCTT
66089314 ATGAGCTTCC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 31 0.79
25 8 0.21
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.40
Consensus pattern (24 bp):
CTTCCCGATATGGTTCTTTGTGAA
Found at i:66092164 original size:18 final size:18
Alignment explanation
Indices: 66092143--66092187 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
66092133 TATTGCACTA
66092143 ATTACTGTCACTGCATTG
1 ATTACTGTCACTGCATTG
*
66092161 ATTACTGTTACTGCATTG
1 ATTACTGTCACTGCATTG
66092179 ATTACTGTC
1 ATTACTGTC
66092188 GCTACACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (18 bp):
ATTACTGTCACTGCATTG
Found at i:66092170 original size:36 final size:35
Alignment explanation
Indices: 66092130--66092208 Score: 95
Period size: 36 Copynumber: 2.2 Consensus size: 35
66092120 CTGTTTAAAT
* * *
66092130 TGTTATTGCACTAATTACTGTCACTGCATTGATTAC
1 TGTTACTGCACTAATTACTGTCACTACACTGA-TAC
* * *
66092166 TGTTACTGCATTGATTACTGTCGCTACACTGATAC
1 TGTTACTGCACTAATTACTGTCACTACACTGATAC
66092201 TGTTACTG
1 TGTTACTG
66092209 TAATGGGCTA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
35 11 0.30
36 26 0.70
ACGTcount: A:0.23, C:0.20, G:0.16, T:0.41
Consensus pattern (35 bp):
TGTTACTGCACTAATTACTGTCACTACACTGATAC
Found at i:66092198 original size:18 final size:18
Alignment explanation
Indices: 66092136--66092208 Score: 76
Period size: 18 Copynumber: 4.1 Consensus size: 18
66092126 AAATTGTTAT
*
66092136 TGCACTAATTACTGTCAC
1 TGCACTGATTACTGTCAC
* *
66092154 TGCATTGATTACTGTTAC
1 TGCACTGATTACTGTCAC
* *
66092172 TGCATTGATTACTGTCGC
1 TGCACTGATTACTGTCAC
* *
66092190 TACACTGA-TACTGTTAC
1 TGCACTGATTACTGTCAC
66092207 TG
1 TG
66092209 TAATGGGCTA
Statistics
Matches: 45, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
17 8 0.18
18 37 0.82
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.38
Consensus pattern (18 bp):
TGCACTGATTACTGTCAC
Found at i:66099701 original size:55 final size:55
Alignment explanation
Indices: 66099635--66099743 Score: 209
Period size: 55 Copynumber: 2.0 Consensus size: 55
66099625 AAATAAAAGT
*
66099635 TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTTAATGAAGGTGGCTTC
1 TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTCAATGAAGGTGGCTTC
66099690 TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTCAATGAAGGTGGCTT
1 TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTCAATGAAGGTGGCTT
66099744 TAATTGTTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (55 bp):
TTGAAATACCAAGTGACTCAGAAAGAATTGAGTTTGTGTCAATGAAGGTGGCTTC
Found at i:66121414 original size:37 final size:37
Alignment explanation
Indices: 66121355--66121463 Score: 166
Period size: 37 Copynumber: 2.9 Consensus size: 37
66121345 AGCTCAGACG
* *
66121355 AAATCTCCACATGA-AGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACA-CATAGTCATCGGGTCTTACCCGGACA
66121392 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
* *
66121429 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACATAGTCATCGGGTCTTACCCGGA
66121464 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 1 0.01
37 66 0.99
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
Found at i:66121942 original size:100 final size:100
Alignment explanation
Indices: 66121799--66122083 Score: 520
Period size: 98 Copynumber: 2.9 Consensus size: 100
66121789 ACATACGCAT
66121799 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
66121864 GGCCATTCGGCCTTATCACACACATATATATACAG
66 GGCCATTCGGCCTTATCACACACATATATATACAG
*
66121899 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATA
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
*
66121964 GGCCATTCGGCCTTAT--CACACATATATATACGG
66 GGCCATTCGGCCTTATCACACACATATATATACAG
* *
66121997 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCACAGT
1 GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
66122062 GGCCATTCGGCCTTATCACACA
66 GGCCATTCGGCCTTATCACACA
66122084 TACGCATGTT
Statistics
Matches: 178, Mismatches: 5, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
98 94 0.53
100 84 0.47
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (100 bp):
GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATT
GGCCATTCGGCCTTATCACACACATATATATACAG
Found at i:66121987 original size:24 final size:24
Alignment explanation
Indices: 66121911--66121987 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
66121901 TCACATTCAT
*
66121911 CACATTGGCCATTCGGCCTTATCA
1 CACATAGGCCATTCGGCCTTATCA
* * *
66121935 CACATACG-CATGTTC--ACAT-TCA
1 CACATAGGCCA--TTCGGCCTTATCA
66121957 TCACATAGGCCATTCGGCCTTATCA
1 -CACATAGGCCATTCGGCCTTATCA
66121982 CACATA
1 CACATA
66121988 TATATACGGG
Statistics
Matches: 39, Mismatches: 7, Indels: 14
0.65 0.12 0.23
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 16 0.41
25 6 0.15
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.27
Consensus pattern (24 bp):
CACATAGGCCATTCGGCCTTATCA
Found at i:66122108 original size:47 final size:47
Alignment explanation
Indices: 66121672--66122106 Score: 627
Period size: 47 Copynumber: 9.0 Consensus size: 47
66121662 ACACGTTTCG
* * * **
66121672 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
66121719 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
66121766 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
66121813 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
** *
66121860 CATTGGCCATTCGGCCTTATCACACACATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CACAC----ATACGCATGTTCACATTCATCA
66121913 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
66121960 CATAGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
66122011 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
66122058 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
66122105 CA
1 CA
66122107 GTTATCCAAA
Statistics
Matches: 354, Mismatches: 24, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
47 262 0.74
49 5 0.01
51 48 0.14
53 39 0.11
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.30
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:66124477 original size:85 final size:85
Alignment explanation
Indices: 66124244--66124591 Score: 671
Period size: 85 Copynumber: 4.1 Consensus size: 85
66124234 TATTTTATTG
*
66124244 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66124309 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
66124329 CCCAT-CTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66124393 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
66124413 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66124478 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
66124498 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATAACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66124563 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
66124583 CCCATGCTC
1 CCCATGCTC
66124592 ATGGCCGGCC
Statistics
Matches: 260, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
84 83 0.32
85 177 0.68
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:66124588 original size:170 final size:169
Alignment explanation
Indices: 66124244--66124591 Score: 669
Period size: 169 Copynumber: 2.1 Consensus size: 169
66124234 TATTTTATTG
*
66124244 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66124309 TAGCCATAACATCTTGTCCACCCATCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAA
66 TAGCCATAACATCTTGTCCACCCATCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAA
*
66124374 CATGTTTATGACATGTTTTTAGCCATAACATCTTGTCCA
131 CATGTTTATAACATGTTTTTAGCCATAACATCTTGTCCA
66124413 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
66124478 TAGCCATAACATCTTGTCCACCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCA
66 TAGCCATAACATCTTGTCCACCCAT-CTCTTTATTTTATTAATCCTTACATAATGCACTACCCCA
66124543 ACATGTTTATAACATGTTTTTAGCCATAACATCTTGTCCA
130 ACATGTTTATAACATGTTTTTAGCCATAACATCTTGTCCA
66124583 CCCATGCTC
1 CCCATGCTC
66124592 ATGGCCGGCC
Statistics
Matches: 176, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
169 89 0.51
170 87 0.49
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (169 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCACCCATCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAA
CATGTTTATAACATGTTTTTAGCCATAACATCTTGTCCA
Found at i:66126217 original size:30 final size:30
Alignment explanation
Indices: 66126183--66126240 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
66126173 TTTTTGGGGA
* *
66126183 TAGGGGTAAAATGGTCATTTTATCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
66126213 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
66126241 ATATGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:66126724 original size:46 final size:45
Alignment explanation
Indices: 66126627--66126788 Score: 168
Period size: 46 Copynumber: 3.5 Consensus size: 45
66126617 ACTAGAGCTT
* * *
66126627 GTGTAAGGCCATGTCTGGGACATGGCATCGGCTTTGAGACG-AGTGCTA
1 GTGTAA-GACATGTCTGGGACAT-GCATCGGCCTCGAGACGTAGT-C-A
*
66126675 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGATACGTAAGTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGT-AGTCA
* * *
66126721 GTGTAAGACATGCCTGGGACATGCATC-GACTACGAGATGT-GTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAGTCA
*
66126765 ATGTAAGACCATGTCTGGGACATG
1 GTGTAAGA-CATGTCTGGGACATG
66126789 ACATTGGCAC
Statistics
Matches: 100, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
44 11 0.11
45 17 0.17
46 47 0.47
47 16 0.16
48 9 0.09
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAGTCA
Found at i:66139245 original size:44 final size:44
Alignment explanation
Indices: 66139197--66139291 Score: 147
Period size: 44 Copynumber: 2.2 Consensus size: 44
66139187 AATACCGATT
* *
66139197 TAGCTTCGGTTAATTGAGATAG-CACTAAGCGTGTGGAATTGTTC
1 TAGCTTCGGTTAATTAAGAT-GTCACTAAGCGAGTGGAATTGTTC
*
66139241 TAGCTTCGGTTAATTAAGATGTCACTAAGTGAGTGGAATTGTTC
1 TAGCTTCGGTTAATTAAGATGTCACTAAGCGAGTGGAATTGTTC
66139285 TAGCTTC
1 TAGCTTC
66139292 AGCTAACTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 1 0.02
44 46 0.98
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (44 bp):
TAGCTTCGGTTAATTAAGATGTCACTAAGCGAGTGGAATTGTTC
Found at i:66139311 original size:44 final size:42
Alignment explanation
Indices: 66139217--66139315 Score: 108
Period size: 44 Copynumber: 2.3 Consensus size: 42
66139207 TAATTGAGAT
* * * * *
66139217 AGCACTAAGCGTGTGGAATTGTTCTAGCTTCGGTTAATTAAG
1 AGCACTAAGTGAGTGGAATTGTTCTAGCTTCAGCTAATTAAC
*
66139259 ATGTCACTAAGTGAGTGGAATTGTTCTAGCTTCAGCTAACTGTTAC
1 A-G-CACTAAGTGAGTGGAATTGTTCTAGCTTCAGCTAA-T-TAAC
66139305 AGCACTAAGTG
1 AGCACTAAGTG
66139316 TACGGATGTT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
42 1 0.02
43 1 0.02
44 40 0.85
45 2 0.04
46 3 0.06
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (42 bp):
AGCACTAAGTGAGTGGAATTGTTCTAGCTTCAGCTAATTAAC
Found at i:66142747 original size:47 final size:47
Alignment explanation
Indices: 66142688--66143022 Score: 508
Period size: 47 Copynumber: 7.1 Consensus size: 47
66142678 GAAATGATAG
*
66142688 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66142735 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
66142784 TAAGGCCTAATGGCCAATGTGATGAAGGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66142831 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
66142878 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66142925 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
66142972 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66143019 TAAG
1 TAAG
66143023 TCCCGAAGGG
Statistics
Matches: 264, Mismatches: 22, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
47 220 0.83
49 44 0.17
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:66143197 original size:37 final size:37
Alignment explanation
Indices: 66143141--66143219 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
66143131 CCGAGCTCTA
* * *
66143141 AAGACCCGATGACTACGTGTGG-GAATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
66143178 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66143215 AAGAC
1 AAGAC
66143220 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66150356 original size:27 final size:27
Alignment explanation
Indices: 66150337--66150665 Score: 381
Period size: 27 Copynumber: 12.2 Consensus size: 27
66150327 ATTACCAAAG
*
66150337 TACCCTCGATTTATAGAATTACCGTTTT
1 TACCCTCGATTTATAGAATTACC-ATTT
*
66150365 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
66150392 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
66150419 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
66150446 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
66150473 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
66150500 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
66150527 TATCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * *
66150554 TACCCTCGATGTACAAAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
66150581 TACCCTCGATTTA-AGAAATATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* **
66150607 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
66150634 TACCATCAATTTATAAAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
66150661 TACCC
1 TACCC
66150666 CTAGGGTGTT
Statistics
Matches: 260, Mismatches: 40, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
26 20 0.08
27 218 0.84
28 22 0.08
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:66151206 original size:31 final size:31
Alignment explanation
Indices: 66151171--66151243 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
66151161 TTGTATTCAC
* * *
66151171 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
*
66151202 ATTCTGATTCTAATTCTGTCACCTAATTCTG
1 ATTCTGATTCTAATTCTGTCACCTAATACTG
66151233 ATTCTGATTCT
1 ATTCTGATTCT
66151244 GTCACCTGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTAATTCTGTCACCTAATACTG
Found at i:66151210 original size:6 final size:6
Alignment explanation
Indices: 66151171--66151289 Score: 57
Period size: 6 Copynumber: 19.3 Consensus size: 6
66151161 TTGTATTCAC
* * * *
66151171 ATTCTG ATTTTG ATTCTG -TTACCTA ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
66151220 -TCACCTA ATTCTG ATTCTG ATTCTG -TCACCTG ATTTTG ATTCTG ATTCTC
1 AT--TCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
66151270 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
66151290 AATGTTTCTT
Statistics
Matches: 82, Mismatches: 20, Indels: 22
0.66 0.16 0.18
Matches are distributed among these distances:
5 5 0.06
6 66 0.80
7 8 0.10
8 3 0.04
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:66151230 original size:25 final size:25
Alignment explanation
Indices: 66151202--66151268 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
66151192 CCTAATACTG
*
66151202 ATTCTGATTCTAATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
*
66151227 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
*
66151252 ATTTTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
66151269 CATTTTGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.19, C:0.21, G:0.12, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:66151262 original size:31 final size:28
Alignment explanation
Indices: 66151171--66151268 Score: 94
Period size: 31 Copynumber: 3.4 Consensus size: 28
66151161 TTGTATTCAC
* *
66151171 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTCTGATTCTGTCACCT-AT--TG
*
66151202 ATTCTGATTCTAATTCTGTCACCTA---
1 ATTCTGATTCTGATTCTGTCACCTATTG
66151227 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGATTCTGTCACCT-A--TTG
66151258 ATTCTGATTCT
1 ATTCTGATTCT
66151269 CATTTTGATT
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
25 23 0.40
26 1 0.02
30 1 0.02
31 32 0.56
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (28 bp):
ATTCTGATTCTGATTCTGTCACCTATTG
Found at i:66152519 original size:30 final size:30
Alignment explanation
Indices: 66152463--66152519 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
66152453 TTTCAGGCCT
* **
66152463 AGGGGTAAAATTGTCATTTTGTCAAAGTCG
1 AGGGGTAAAATGGTCATTTTACCAAAGTCG
*
66152493 AGGGGTAAACTGGTCATTTTACCAAAG
1 AGGGGTAAAATGGTCATTTTACCAAAG
66152520 ATATGAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (30 bp):
AGGGGTAAAATGGTCATTTTACCAAAGTCG
Found at i:66153833 original size:37 final size:37
Alignment explanation
Indices: 66153776--66153915 Score: 244
Period size: 37 Copynumber: 3.8 Consensus size: 37
66153766 CGAATAGTCC
* * *
66153776 CCACACGTAGTTATCAGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
66153813 CCAGACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
66153850 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
66153887 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
66153916 ATATATTTCC
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:66154113 original size:28 final size:28
Alignment explanation
Indices: 66154080--66154161 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 28
66154070 TCACACTAGC
66154080 CATTCAGCTTTACCACATATACATATCT
1 CATTCAGCTTTACCACATATACATATCT
** *
66154108 CATTCATATTT--CAC----AC-TAGC-
1 CATTCAGCTTTACCACATATACATATCT
*
66154128 CATTCGGCTTTACCACATATACATATCT
1 CATTCAGCTTTACCACATATACATATCT
66154156 CATTCA
1 CATTCA
66154162 TATTTCACAC
Statistics
Matches: 38, Mismatches: 8, Indels: 16
0.61 0.13 0.26
Matches are distributed among these distances:
20 8 0.21
21 3 0.08
22 5 0.13
26 5 0.13
27 3 0.08
28 14 0.37
ACGTcount: A:0.30, C:0.29, G:0.05, T:0.35
Consensus pattern (28 bp):
CATTCAGCTTTACCACATATACATATCT
Found at i:66154116 original size:48 final size:48
Alignment explanation
Indices: 66154056--66154903 Score: 1369
Period size: 48 Copynumber: 17.9 Consensus size: 48
66154046 ATATACACAC
* *
66154056 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66154104 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66154152 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66154200 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
66154248 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66154294 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAGACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66154342 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
66154390 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66154436 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
66154484 ATCTCATACATATTTCACACTAGCCATTCGGCTTGACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66154530 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66154578 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
66154626 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66154672 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
66154720 ATCTCATACATATTTCACACTAGCCATTCGGCTTGACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
66154766 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAGATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
66154814 ATCTCATATATATTTCACATTATCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
66154860 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATAT
66154904 TCACTACAAG
Statistics
Matches: 742, Mismatches: 46, Indels: 24
0.91 0.06 0.03
Matches are distributed among these distances:
46 257 0.35
48 485 0.65
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:66154360 original size:94 final size:95
Alignment explanation
Indices: 66154056--66154903 Score: 1361
Period size: 94 Copynumber: 9.0 Consensus size: 95
66154046 ATATACACAC
* * *
66154056 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATTCATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
66154121 CACTAGCCATTCGGCTTTACCACATATACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
*
66154152 ATCTCATTCATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
66154217 CACTAGCCATTCGGCTTTACCACATATACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
* * *
66154248 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC-ACACATATCTCATACATATTTCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
*
66154312 ACTAGCCATTCGGCTTTACCACATAGACAT
66 ACTAGCCATTCGGCTTTACCACATATACAT
* *
66154342 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
* *
66154407 CATTAGCCATTCGGCTTTACCAC--ACACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
*
66154436 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
* *
66154501 CACTAGCCATTCGGCTTGACCAC--ACACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
66154530 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAGATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA-ATACATATCTCATACATATTTCA
66154595 CACTAGCCATTCGGCTTTACCACATATACAT
65 CACTAGCCATTCGGCTTTACCACATATACAT
* * *
66154626 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC-ACACATATCTCATACATATTTCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
*
66154690 ACTAGCCATTTGGCTTTACCACATATACAT
66 ACTAGCCATTCGGCTTTACCACATATACAT
* *
66154720 ATCTCATACATATTTCACACTAGCCATTCGGCTTGACCAC-ACACATATCTCATACATATTTCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
*
66154784 ACTAGCCATTCGGCTTTACCACAGATACAT
66 ACTAGCCATTCGGCTTTACCACATATACAT
* * * *
66154814 ATCTCATATATATTTCACATTATCCATTCGGCTTTACCAC-ACACATATCTCATACATATTTCAC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
66154878 ACTAGCCATTCGGCTTTACCACATAT
66 ACTAGCCATTCGGCTTTACCACATAT
66154904 TCACTACAAG
Statistics
Matches: 709, Mismatches: 39, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
94 494 0.70
96 215 0.30
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (95 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAATACATATCTCATACATATTTCAC
ACTAGCCATTCGGCTTTACCACATATACAT
Found at i:66154371 original size:142 final size:143
Alignment explanation
Indices: 66154056--66154903 Score: 1374
Period size: 142 Copynumber: 6.0 Consensus size: 143
66154046 ATATACACAC
* *
66154056 ATCTCCTACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCAT-TCATATTTC
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT-ATATTTC
* *
66154120 ACACTAGCCATTCGGCTTTACCACATATACATATCTCATTCATATTTCACACTAGCCATTCGGCT
65 ACACTAGCCATTCGGCTTTACCACA-ACACATATCTCATACATATTTCACACTAGCCATTCGGCT
66154185 TTACCACATATACAT
129 TTACCACATATACAT
66154200 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
*
66154265 CATTAGCCATTCGGCTTTACCAC-ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
66 CACTAGCCATTCGGCTTTACCACAACACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
*
66154329 ACCACATAGACAT
131 ACCACATATACAT
*
66154342 ATCTCATACATATCTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
* *
66154407 CATTAGCCATTCGGCTTTACCAC-ACACATATCTCATACATATTTCACACTAGCCATTTGGCTTT
66 CACTAGCCATTCGGCTTTACCACAACACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
66154471 ACCACATATACAT
131 ACCACATATACAT
* * *
66154484 ATCTCATACATATTTCACACTAGCCATTCGGCTTGACCAC--ACACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
*
66154547 CACTAGCCATTCGGCTTTACCACAGATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACA-ACACATATCTCATACATATTTCACACTAGCCATTCGGCTT
66154612 TACCACATATACAT
130 TACCACATATACAT
* * * *
66154626 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
* *
66154689 CACTAGCCATTTGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTT
66 CACTAGCCATTCGGCTTTACCACA-ACACATATCTCATACATATTTCACACTAGCCATTCGGCTT
* *
66154754 GACCAC--ACACAT
130 TACCACATATACAT
*
66154766 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACAGATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
* *
66154831 CATTATCCATTCGGCTTTACCAC-ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
66 CACTAGCCATTCGGCTTTACCACAACACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
66154895 ACCACATAT
131 ACCACATAT
66154904 TCACTACAAG
Statistics
Matches: 664, Mismatches: 33, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
140 130 0.20
142 450 0.68
144 83 0.12
145 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (143 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCA
CACTAGCCATTCGGCTTTACCACAACACATATCTCATACATATTTCACACTAGCCATTCGGCTTT
ACCACATATACAT
Found at i:66194412 original size:96 final size:96
Alignment explanation
Indices: 66194248--66194493 Score: 393
Period size: 96 Copynumber: 2.6 Consensus size: 96
66194238 GATGGCACCG
* *
66194248 AAGAAGCTTGGTTTGAGCAAGGGTAAAGCCGAAGCTAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
1 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
* *
66194313 CGAAGGGAACGATGGAGTAGACAAGGACCCC
66 CGAAGGGAACGATGGAGCAGACAAAGACCCC
* * *
66194344 AAGAAGCTTGGTTCGAGCAAGAGTAAAGCCGAAGCCAAGAAGGCAAAGAGGAGCAAGTCTGTTAT
1 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
*
66194409 CGAAGGGAACGATGGAGCAGACAAAGAGCCC
66 CGAAGGGAACGATGGAGCAGACAAAGACCCC
* * *
66194440 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCAAAGGCAAGAGGGCTAAGAGGAGC
1 AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66194494 TGAAAGCACA
Statistics
Matches: 137, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 137 1.00
ACGTcount: A:0.37, C:0.17, G:0.34, T:0.12
Consensus pattern (96 bp):
AAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGTCTGTCAT
CGAAGGGAACGATGGAGCAGACAAAGACCCC
Found at i:66200571 original size:40 final size:39
Alignment explanation
Indices: 66200514--66200703 Score: 204
Period size: 40 Copynumber: 4.8 Consensus size: 39
66200504 GGATATAACT
* *
66200514 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-GAGTA
* *
66200554 ACTCGCACAATTTCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAA-TGCCTTCGGGACTTAGCCCGGATTGAGTA
** * *
66200594 ACTCGCACAAATGCCTTCTAGACTTAGCCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTGAGTA
* *
66200634 ACTCACACAGATGCCTTCGGGACTTAGCCCGGATT-AGTC
1 ACTCGCACA-ATGCCTTCGGGACTTAGCCCGGATTGAGTA
* *
66200673 ACTAGCGCAGATGCCTTCGGGACTTAGCCCG
1 ACTCGCACA-ATGCCTTCGGGACTTAGCCCG
66200704 ATTTTCATCC
Statistics
Matches: 130, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
39 34 0.26
40 92 0.71
41 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTGAGTA
Found at i:66200635 original size:80 final size:80
Alignment explanation
Indices: 66200514--66200703 Score: 242
Period size: 80 Copynumber: 2.4 Consensus size: 80
66200504 GGATATAACT
* * * *
66200514 ACTCGCTCAAATGCCTTCGGGACATAGCCC-GGTTAGAGTAACTCGCACA-ATTTCCTTCGGGAC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTAGAGTAACTCACACAGA-TGCCTTCGGGAC
66200577 TTAGCCCGGATTTAGTA
65 TTAGCCCGGA-TTAGTA
** *
66200594 ACTCGCACAAATGCCTTCTAGACTTAGCCCGGGTT-TAGTAACTCACACAGATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTAGAGTAACTCACACAGATGCCTTCGGGACT
*
66200658 TAGCCCGGATTAGTC
66 TAGCCCGGATTAGTA
* * *
66200673 ACTAGCGCAGATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
66200704 ATTTTCATCC
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 31 0.33
80 59 0.62
81 5 0.05
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTAGAGTAACTCACACAGATGCCTTCGGGACT
TAGCCCGGATTAGTA
Found at i:66208790 original size:40 final size:40
Alignment explanation
Indices: 66208735--66208928 Score: 223
Period size: 40 Copynumber: 4.9 Consensus size: 40
66208725 GGATATAACT
* * *
66208735 ACTCGCTCAAATGCCTTCGGGACATAGCCC-GGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGGTT-TAGTA
* *
66208775 ACTCGCACAATTGCCTTCGGGACTTAGCCCAGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGGTTTAGTA
*
66208815 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGGTTTAGTA
* ** *
66208855 ACTCGCACAGATGCCTTCGGGACTTAGCCC-GAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGGTTTAGTA
* * * * *
66208894 AGTAGCGCAGATTCCTTCGGGACTTAGCCC-GGTTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCAGGTTT
66208929 TCATCCAAAT
Statistics
Matches: 135, Mismatches: 18, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
39 35 0.26
40 97 0.72
41 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCAGGTTTAGTA
Found at i:66208870 original size:80 final size:80
Alignment explanation
Indices: 66208735--66208925 Score: 253
Period size: 80 Copynumber: 2.4 Consensus size: 80
66208725 GGATATAACT
* *
66208735 ACTCGCTCAAATGCCTTCGGGACATAGCCC-GGTTAGAGTAACTCGCACAATTGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTAGAGTAACTCGCACAATTGCCTTCGGGACT
*
66208799 TAGCCCAGATTTAGTA
66 TAGCCC-GAATTAGTA
*
66208815 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTT-TAGTAACTCGCACAGA-TGCCTTCGGGAC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTAGAGTAACTCGCACA-ATTGCCTTCGGGAC
*
66208878 TTAGCCCGAATTAGTC
65 TTAGCCCGAATTAGTA
* * * * *
66208894 AGTAGCGCAGATTCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
66208926 TTTTCATCCA
Statistics
Matches: 99, Mismatches: 10, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
79 34 0.34
80 60 0.61
81 5 0.05
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.24
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGGTTAGAGTAACTCGCACAATTGCCTTCGGGACT
TAGCCCGAATTAGTA
Found at i:66212397 original size:33 final size:32
Alignment explanation
Indices: 66212355--66212420 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 32
66212345 ATCGAAACGG
66212355 GTAGTTTGG-TTTAAAAAAAATTTTAGATGATTT
1 GTAGTTTGGTTTTAAAAAAAA--TTAGATGATTT
66212388 GTAGTTTGGTTTTTAAAAAAAATTAGATGATTT
1 GTAGTTTGG-TTTTAAAAAAAATTAGATGATTT
66212421 ACCTTGTAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 20 0.65
35 11 0.35
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (32 bp):
GTAGTTTGGTTTTAAAAAAAATTAGATGATTT
Found at i:66220549 original size:43 final size:43
Alignment explanation
Indices: 66220483--66220566 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
66220473 AAATCGTAAA
* *
66220483 ATGCCAATGTCCTAGACGTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTAC-TCGTAAACACATATCG
*
66220526 ATGCCACTGTCCCAGACAG-GGTCTTACTCGTAAACACATAT
1 ATGCCAATGTCCCAGAC-GTGGTCTTACTCGTAAACACATAT
66220567 TGGAACCACA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 1 0.03
43 34 0.94
44 1 0.03
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACTCGTAAACACATATCG
Found at i:66229852 original size:46 final size:46
Alignment explanation
Indices: 66229780--66230001 Score: 211
Period size: 46 Copynumber: 4.8 Consensus size: 46
66229770 TATTTGGGCA
* *
66229780 TCCGAAATCGTTG-GTTTGAGTCCGAGTTCCCTTATGGATGCGAATG
1 TCCGAACTCGTTGAG-TTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66229826 TCCGAACTCGTTGAGTTGAGTTCGAGTTGACTTATAGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
66229872 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
66229919 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66229965 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66230002 GCGGGTTACA
Statistics
Matches: 143, Mismatches: 24, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 2 0.01
46 101 0.71
47 31 0.22
48 1 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66229945 original size:93 final size:93
Alignment explanation
Indices: 66229826--66229994 Score: 250
Period size: 93 Copynumber: 1.8 Consensus size: 93
66229816 GATGCGAATG
* * *
66229826 TCCGAACTCGTTGAGTTGAGTTCGAGTTGACTTATAGATGCGAATG-TCCGAACTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCT-CGAACTCGTTGAGTTG
*
66229890 AGTCTGAGTTCGAGAGATGTAACTAGGCA
65 AGTCCGAGTTCGAGAGATGTAACTAGGCA
* * * *
66229919 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCTCGAGCTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCTCGAACTCGTTGAGTTGA
66229984 GTCCGAGTTCG
66 GTCCGAGTTCG
66229995 CTTATGGGCG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 66 0.99
94 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.30
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCTCGAACTCGTTGAGTTGA
GTCCGAGTTCGAGAGATGTAACTAGGCA
Found at i:66236072 original size:26 final size:26
Alignment explanation
Indices: 66236042--66236149 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
66236032 TGAAATTCCC
66236042 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
66236068 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
**
66236094 ATCATAAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
66236120 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
66236146 ATCA
1 ATCA
66236150 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:66246775 original size:23 final size:23
Alignment explanation
Indices: 66246749--66246795 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
66246739 CATTCTCTTG
*
66246749 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
66246772 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
66246795 T
1 T
66246796 AATGTCATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:66253137 original size:40 final size:40
Alignment explanation
Indices: 66253101--66253330 Score: 347
Period size: 40 Copynumber: 5.8 Consensus size: 40
66253091 GGATATAGCT
*
66253101 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
** *
66253141 GTTAGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
66253181 ACTCGCACAAATGCCTTCGGGACTTATCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
66253221 ACTCTCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
66253261 ATTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
66253301 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
66253331 CGTTATCATC
Statistics
Matches: 174, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 172 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:66253230 original size:80 final size:80
Alignment explanation
Indices: 66253075--66253330 Score: 367
Period size: 80 Copynumber: 3.2 Consensus size: 80
66253065 AAACCAAGTA
* * *
66253075 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATAT
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-T
**
66253137 AGTAGTTAGCACAAATG
64 AGTAACTAGCACAAATG
*
66253154 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
**
66253219 TAACTCTCACAAATG
66 TAACTAGCACAAATG
*
66253234 CCTTCGGGACTTAGCCCGGA-ATTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
*
66253298 GTCACTAGCACAAATG
65 GTAACTAGCACAAATG
66253314 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
66253331 CGTTATCATC
Statistics
Matches: 160, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
79 14 0.09
80 144 0.90
81 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
TAACTAGCACAAATG
Found at i:66261213 original size:40 final size:41
Alignment explanation
Indices: 66261151--66261405 Score: 348
Period size: 40 Copynumber: 6.4 Consensus size: 41
66261141 AAACCAAGTA
* * *
66261151 CCTTCGGGATTTA-ACCGGATA-TAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATTAG-TAACTCGCACAAATG
**
66261190 CCTTCGGGACTTAGCCCGGATA-TAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
66261230 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
66261270 CCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
66261310 CCTTCGGGACTTAGCCCGGA-ATTAGTAA-TCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
* * * * *
66261349 CCTTCGGGACTTAGCCC-AAAATTAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
66261389 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
66261406 CGTTATCATC
Statistics
Matches: 200, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.00
39 49 0.25
40 150 0.75
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATTAGTAACTCGCACAAATG
Done.