Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 197 of 345
Found at i:66700308 original size:29 final size:27
Alignment explanation
Indices: 66700290--66700359 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
66700280 ATATTAAGTC
*
66700290 CGCATACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
66700317 CGCACACTTAGTGCTATATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
66700345 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
66700360 GTACAATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:66700353 original size:28 final size:28
Alignment explanation
Indices: 66700290--66700387 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
66700280 ATATTAAGTC
* *
66700290 CGCATACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
66700317 CGCACACTTAGTGCTATATAGTCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
66700345 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
66700374 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66700388 CAATCTCAGG
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 20 0.33
28 22 0.36
29 19 0.31
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:66701994 original size:21 final size:21
Alignment explanation
Indices: 66701970--66702036 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
66701960 TATGCAAGTA
66701970 TGAATGATGATTTTATCTAAG
1 TGAATGATGATTTTATCTAAG
*
66701991 TGAAT-ACT--TTGTATGC-AAG
1 TGAATGA-TGATTTTAT-CTAAG
*
66702010 TATGAATGATGATTTTATCTGAG
1 --TGAATGATGATTTTATCTAAG
66702033 TGAA
1 TGAA
66702037 AGTATGTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 16
0.65 0.06 0.30
Matches are distributed among these distances:
19 8 0.23
20 2 0.06
21 16 0.46
22 2 0.06
23 7 0.20
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.40
Consensus pattern (21 bp):
TGAATGATGATTTTATCTAAG
Found at i:66702003 original size:42 final size:42
Alignment explanation
Indices: 66701956--66702036 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
66701946 AATCAGATAG
66701956 TTTGTATGCAAGTATGAATGATGATTTTATCTAAGTGAATAC
1 TTTGTATGCAAGTATGAATGATGATTTTATCTAAGTGAATAC
*
66701998 TTTGTATGCAAGTATGAATGATGATTTTATCTGAGTGAA
1 TTTGTATGCAAGTATGAATGATGATTTTATCTAAGTGAA
66702037 AGTATGTTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.32, C:0.06, G:0.21, T:0.41
Consensus pattern (42 bp):
TTTGTATGCAAGTATGAATGATGATTTTATCTAAGTGAATAC
Found at i:66704416 original size:27 final size:27
Alignment explanation
Indices: 66704399--66704576 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
66704389 ATATTAAGTC
66704399 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
66704426 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
66704454 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
66704481 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
66704508 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
66704535 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
66704562 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
66704577 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:66704538 original size:54 final size:54
Alignment explanation
Indices: 66704399--66704575 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
66704389 ATATTAAGTC
* * *
66704399 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-T
* ** * *
66704454 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
66704508 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
66704562 CGCACACTTAGTGC
1 CGCACACTTAGTGC
66704576 TGTACAATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:66704565 original size:81 final size:82
Alignment explanation
Indices: 66704420--66704575 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
66704410 TGCTATATAA
* *
66704420 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
66704485 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
66704502 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
66704565 ACACTTAGTGC
65 ACACTTAGTGC
66704576 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 42 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:66719236 original size:40 final size:40
Alignment explanation
Indices: 66719192--66719382 Score: 220
Period size: 40 Copynumber: 4.8 Consensus size: 40
66719182 ATAACCACAA
** *
66719192 GCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACTC
* * * *
66719232 GCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACTG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACTC
* * * * **
66719272 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACTC
* *
66719312 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACTC
* * *
66719352 GCACAATTGCCTTCGTGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
66719383 TCATTCAAAT
Statistics
Matches: 123, Mismatches: 28, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 123 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACTC
Found at i:66719311 original size:80 final size:80
Alignment explanation
Indices: 66719163--66719383 Score: 293
Period size: 80 Copynumber: 2.8 Consensus size: 80
66719153 ACCCAAGTTT
* * * * * *
66719163 CTTCGGAAT-TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAG
1 CTTCGG-ATCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAG
*
66719226 TAACTCGCACAAATGC
65 CAACTCGCACAAATGC
* * *
66719242 CTTCGGATCTTAGTCCGGATAAAATCACTGGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGC
66719307 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* * * *
66719322 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGTGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATAT
66719384 CATTCAAATG
Statistics
Matches: 124, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
78 2 0.02
79 10 0.08
80 112 0.90
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGATATAGC
AACTCGCACAAATGC
Found at i:66721325 original size:37 final size:37
Alignment explanation
Indices: 66721269--66721347 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
66721259 CCGAGCTCTA
* * *
66721269 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
66721306 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66721343 AAGAC
1 AAGAC
66721348 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66722803 original size:40 final size:40
Alignment explanation
Indices: 66722766--66722951 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
66722756 GCTACTCGTT
* *
66722766 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
66722806 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
66722846 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
66722886 CAAATGCCTTC-GGATCTTAGTCCGGA-TAAGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTA-GTAAC-TCGCA
*
66722927 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
66722952 CATCATTCGA
Statistics
Matches: 131, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
39 5 0.04
40 113 0.86
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:66724443 original size:56 final size:56
Alignment explanation
Indices: 66724376--66724496 Score: 233
Period size: 56 Copynumber: 2.2 Consensus size: 56
66724366 TATTAGTTTA
66724376 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
66724432 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
66724488 TTGCCCATG
1 TTGCCCATG
66724497 ATCCCTTGTC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:66728296 original size:37 final size:37
Alignment explanation
Indices: 66728246--66728320 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
66728236 AAGTATGCTA
66728246 TTACAACCATCTCGTGATTGATCTTTAGGCATACTCT
1 TTACAACCATCTCGTGATTGATCTTTAGGCATACTCT
66728283 TTACAACCATCTCGTGATTGATCTTTAGGCATACTCT
1 TTACAACCATCTCGTGATTGATCTTTAGGCATACTCT
66728320 T
1 T
66728321 ACACTAACTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (37 bp):
TTACAACCATCTCGTGATTGATCTTTAGGCATACTCT
Found at i:66733154 original size:19 final size:19
Alignment explanation
Indices: 66733130--66733166 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
66733120 CTTGGGTTGT
66733130 GAATAGGCCAAATGGGCCA
1 GAATAGGCCAAATGGGCCA
*
66733149 GAATAGGCTAAATGGGCC
1 GAATAGGCCAAATGGGCC
66733167 CGAGGGGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.32, T:0.14
Consensus pattern (19 bp):
GAATAGGCCAAATGGGCCA
Found at i:66733285 original size:29 final size:28
Alignment explanation
Indices: 66733244--66733389 Score: 136
Period size: 29 Copynumber: 5.1 Consensus size: 28
66733234 GTGAGCATGA
*
66733244 ATAT-AATGTGATTTGGGCCGGATGGGCA
1 ATATAAATGTGA-TTGGGCCGGATGGGCC
* *
66733272 ATATAAATGAGATTGGG-CGTAATGGGCC
1 ATATAAATGTGATTGGGCCG-GATGGGCC
* * *
66733300 ACATGAATGTGAATTGGGCCAGATGGGCC
1 ATATAAATGTG-ATTGGGCCGGATGGGCC
* *
66733329 ATATGAACGTGAATTGGGCCGGATGGGCC
1 ATATAAATGTG-ATTGGGCCGGATGGGCC
* *
66733358 ATATAAATGAGATTGGGCC-TAGTGGGCC
1 ATATAAATGTGATTGGGCCGGA-TGGGCC
66733386 ATAT
1 ATAT
66733390 GTTGGTATGT
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
27 3 0.03
28 41 0.42
29 53 0.54
30 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.25
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCGGATGGGCC
Found at i:66737512 original size:47 final size:47
Alignment explanation
Indices: 66737441--66738125 Score: 1201
Period size: 47 Copynumber: 14.6 Consensus size: 47
66737431 CCCTTCGGGA
* * * * * * *
66737441 CTTATCACATTTATACAGTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66737488 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
66737535 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66737582 CTTATCACATATATACACTTTCACATTCATAACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66737629 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66737676 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66737723 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66737770 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66737817 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66737864 CTTATCACATATATACACTTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66737911 CTTATCACATATATACACTTTCACATTCGTCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
66737958 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
66738005 CTTATCACATATATACACTTTCACAGTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66738052 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
66738099 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
66738126 TATTCAAATA
Statistics
Matches: 611, Mismatches: 25, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 610 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:66737519 original size:25 final size:25
Alignment explanation
Indices: 66737491--66737569 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
66737481 ACTCGGCCCT
66737491 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * *
66737516 ATCACAT-T-GGC-CATTCAGCCTT-
1 ATCACATATATACACTTTCA-CATTC
66737538 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
66737563 ATCACAT
1 ATCACAT
66737570 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 12 0.29
23 5 0.12
24 5 0.12
25 19 0.46
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:66741784 original size:42 final size:42
Alignment explanation
Indices: 66741721--66741847 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
66741711 CTTCGTTTTC
** * *
66741721 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
66741764 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
66741805 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
66741846 TC
1 TC
66741848 TCACTGATGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:66744070 original size:34 final size:34
Alignment explanation
Indices: 66744010--66744090 Score: 92
Period size: 34 Copynumber: 2.4 Consensus size: 34
66744000 TTAGCCCCTC
*
66744010 TTTCAGTAGCAGTAGCAATCTAGGCCTGAGCCCA
1 TTTCAGTAACAGTAGCAATCTAGGCCTGAGCCCA
* * * * *
66744044 TTTCAGTAACAGTGGCAGTCTGGGCCTTAGCCTA
1 TTTCAGTAACAGTAGCAATCTAGGCCTGAGCCCA
*
66744078 TTTTAGT-ACAGTA
1 TTTCAGTAACAGTA
66744091 TGCACACAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
33 5 0.13
34 34 0.87
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (34 bp):
TTTCAGTAACAGTAGCAATCTAGGCCTGAGCCCA
Found at i:66751556 original size:40 final size:40
Alignment explanation
Indices: 66751495--66751720 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
66751485 CTAACGGGGT
* * * * *
66751495 TAAGTCCCGAAGACATGTGTGCTAGTGATTAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* * *
66751535 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCTGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
66751575 TAAGTCCCGAAGGCATTGGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
*
66751615 TAAGTCCTGAAGGCATTTGTGCGAGTTG-CT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAG-TGACTAAT-TCCGGGC
* * * *
66751655 TAAGACCCGAAGGCATTTATGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
* *
66751695 TAAGACCCGAAGG-ACTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTG
66751721 GTTATATCCG
Statistics
Matches: 163, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 14 0.09
40 148 0.91
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:66759817 original size:40 final size:40
Alignment explanation
Indices: 66759756--66759981 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
66759746 CTAACGGGGT
* * * *
66759756 TAAGTCCCGAAGACATGTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
66759796 TAAGTCCCGAAGGCATTTGTGCGAGTTACAAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
66759836 TAAGTCCCGAAGGCATTGGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
66759876 TAAGTCCCGAAGGCATTTGTGCGAGTTG-CT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAG-TGACTAAT-TCCGGGC
* * * *
66759916 TAAGACCCGAAGGCATTTATGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
* *
66759956 TAAGACCCGAAGGC-CTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTG
66759982 GTTATATACG
Statistics
Matches: 166, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 13 0.08
40 152 0.92
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:66768998 original size:14 final size:14
Alignment explanation
Indices: 66768981--66769007 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
66768971 AATCACTTAG
66768981 TAAAAGTGGTTTAA
1 TAAAAGTGGTTTAA
66768995 TAAAAGTGGTTTA
1 TAAAAGTGGTTTA
66769008 CCATCCTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.37
Consensus pattern (14 bp):
TAAAAGTGGTTTAA
Found at i:66771365 original size:49 final size:50
Alignment explanation
Indices: 66771234--66771369 Score: 159
Period size: 49 Copynumber: 2.7 Consensus size: 50
66771224 CACCATTTGC
* * * * *
66771234 GGACAAGCCACCACTGATTTGCAAATAAACTGCCAATGATAATACTTTGT
1 GGACAAGCCACCACTGATTTGCAGATAAACTACCACTGATAACACTCTGT
* * * *
66771284 AGACAAGCCACCACTAATATGC-GTATATACTACCACTGA-AACACTCTGT
1 GGACAAGCCACCACTGATTTGCAG-ATAAACTACCACTGATAACACTCTGT
*
66771333 GGACAAGCCACCATTGATTTGCAGATAAACTACCACT
1 GGACAAGCCACCACTGATTTGCAGATAAACTACCACT
66771370 TACTTTGTAA
Statistics
Matches: 70, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
49 38 0.54
50 32 0.46
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.24
Consensus pattern (50 bp):
GGACAAGCCACCACTGATTTGCAGATAAACTACCACTGATAACACTCTGT
Found at i:66771404 original size:16 final size:16
Alignment explanation
Indices: 66771383--66771414 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
66771373 TTTGTAACGC
*
66771383 CCCAAAAATCTCAAAA
1 CCCAAAAATCCCAAAA
66771399 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
66771415 TCCTGAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.34, G:0.00, T:0.09
Consensus pattern (16 bp):
CCCAAAAATCCCAAAA
Found at i:66772871 original size:29 final size:29
Alignment explanation
Indices: 66772839--66772910 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
66772829 TTAACGGGCT
*
66772839 ATATAAATGTGATTTGGGGCTAATAGGCC
1 ATATAAATGTGATTTGGGCCTAATAGGCC
* * *
66772868 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATAGGCC
* *
66772897 ATATGAATATGATT
1 ATATAAATGTGATT
66772911 AGGCTTAGTG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.32
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATAGGCC
Found at i:66783675 original size:30 final size:29
Alignment explanation
Indices: 66783639--66783696 Score: 107
Period size: 30 Copynumber: 2.0 Consensus size: 29
66783629 AACGGAAGTT
66783639 TTGGCACTAAGTGTGCGATTTAAACTAGCC
1 TTGGCACTAAGTGTGCGATTT-AACTAGCC
66783669 TTGGCACTAAGTGTGCGATTTAACTAGC
1 TTGGCACTAAGTGTGCGATTTAACTAGC
66783697 TCCGGCTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (29 bp):
TTGGCACTAAGTGTGCGATTTAACTAGCC
Found at i:66784060 original size:14 final size:15
Alignment explanation
Indices: 66784041--66784070 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
66784031 GTTTATTATA
66784041 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
66784055 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
66784070 T
1 T
66784071 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:66786152 original size:40 final size:41
Alignment explanation
Indices: 66785949--66786151 Score: 142
Period size: 40 Copynumber: 4.9 Consensus size: 41
66785939 AAATGTTTTA
* * * * *
66785949 TCGGGCTTCAAGCCTAGCAAGCTTTAA-GCTGGTGAATAATAT
1 TCGGGCTTAAAGCCTAGCAGGC-TAAATGCCGGTGAATGA-AT
**
66785991 TACCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATG-AT
1 T--CGGGCTTAAAGCCTAGCAGGCTA-AATGCCGGTG-AATGAAT
* * * *
66786035 ATCGGGCTTCAAGCCTAGCAGGCGAAATGCCAGTGAATGAGT
1 -TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGAATGAAT
* * * *** *
66786077 TCAGACTTAAAGTCTAGCAGGCTTCGTGCTGGTG-ATGAAT
1 TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGAATGAAT
* *
66786117 TCGGGTTTAAAACCTAGCAGGCTAAATGCCGGTGA
1 TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGA
66786152 TTTGATAAAA
Statistics
Matches: 124, Mismatches: 29, Indels: 17
0.73 0.17 0.10
Matches are distributed among these distances:
40 30 0.24
41 28 0.23
42 11 0.09
43 22 0.18
44 23 0.19
45 7 0.06
46 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (41 bp):
TCGGGCTTAAAGCCTAGCAGGCTAAATGCCGGTGAATGAAT
Found at i:66787314 original size:180 final size:180
Alignment explanation
Indices: 66787107--66787463 Score: 642
Period size: 180 Copynumber: 2.0 Consensus size: 180
66787097 AAATCTGCTA
66787107 TTGATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATAGAAGATATTTGAGTCTATTTCCACA
1 TTGATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATAGAAGATATTTGAGTCTATTTCCACA
66787172 TAAAATTAACAGAAATTTATTTGGAGCTTAGTATCTCCAATTATAAACAATTTAGTGACTGTTGC
66 TAAAATTAACAGAAATTTATTTGGAGCTTAGTATCTCCAATTATAAACAATTTAGTGACTGTTGC
* * *
66787237 TCAGGAAGACAACTTGTAGTGAATTTGTGATTATGTTATAAACATTGGTC
131 CCAGGAAGACAACTTGTAGTGAAGTTGTGATTATATTATAAACATTGGTC
* * *
66787287 TTGATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATATAAGATATTTGAGTCTATTTTCAGA
1 TTGATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATAGAAGATATTTGAGTCTATTTCCACA
* *
66787352 TAAAATTAACGGAAATTTATTTGGAGTTTAGTATCTCCAATTATAAACAATTTAGTGACTGTTGC
66 TAAAATTAACAGAAATTTATTTGGAGCTTAGTATCTCCAATTATAAACAATTTAGTGACTGTTGC
66787417 CCAGGAAGACAACTTGTAGTGAAGTTGTGATTATATTATAAACATTG
131 CCAGGAAGACAACTTGTAGTGAAGTTGTGATTATATTATAAACATTG
66787464 ATTAAACTTG
Statistics
Matches: 169, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
180 169 1.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (180 bp):
TTGATTGGCCAAACCAAAAATTCTGAAAATTTTATGGATAGAAGATATTTGAGTCTATTTCCACA
TAAAATTAACAGAAATTTATTTGGAGCTTAGTATCTCCAATTATAAACAATTTAGTGACTGTTGC
CCAGGAAGACAACTTGTAGTGAAGTTGTGATTATATTATAAACATTGGTC
Found at i:66790708 original size:29 final size:29
Alignment explanation
Indices: 66790676--66790747 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
66790666 CTAACACGCT
**
66790676 ATATAAATGTGATTTGGGGCTAATGGGCC
1 ATATAAATGTGATTTGGACCTAATGGGCC
* *
66790705 ATATACAGGTGATTTGGACCTAATGGGCC
1 ATATAAATGTGATTTGGACCTAATGGGCC
* *
66790734 ATATGAATATGATT
1 ATATAAATGTGATT
66790748 GAGCTTAATG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.32
Consensus pattern (29 bp):
ATATAAATGTGATTTGGACCTAATGGGCC
Found at i:66795144 original size:17 final size:17
Alignment explanation
Indices: 66795120--66795167 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
66795110 AAATTGTACG
*
66795120 GAATAAATTATTTTATT
1 GAATAAATTATTATATT
* *
66795137 GTATAAATTAATATATT
1 GAATAAATTATTATATT
66795154 GAATGAAATTATTA
1 GAAT-AAATTATTA
66795168 ATTTAGATCA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 17 0.68
18 8 0.32
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (17 bp):
GAATAAATTATTATATT
Found at i:66797387 original size:12 final size:12
Alignment explanation
Indices: 66797366--66797395 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
66797356 GTCAGGTTTT
*
66797366 ACACGACCTAGC
1 ACACGGCCTAGC
66797378 ACACGGCCTAGC
1 ACACGGCCTAGC
66797390 ACACGG
1 ACACGG
66797396 GTGTGTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.40, G:0.23, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:66799293 original size:259 final size:259
Alignment explanation
Indices: 66798700--66800747 Score: 3978
Period size: 259 Copynumber: 7.9 Consensus size: 259
66798690 CCATGGGCCT
66798700 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTA---TAACAATTTA
1 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
66798762 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66798827 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
131 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTT-AA
*
66798892 AAATTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
195 AACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
66798957 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
1 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
*
66799022 GTCCCAAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66799087 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
131 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
66799152 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
196 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
66799216 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
1 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
66799281 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
*
66799346 CAAATTCATCATTTAACATAAAAAAATCACTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
131 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
66799411 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
196 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
66799475 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
1 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
66799540 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66799605 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
131 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
66799670 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
196 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
66799734 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
1 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
66799799 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66799864 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
131 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
66799929 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
196 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
66799993 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
1 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
*
66800058 GTCCCTAATCGATAAATTTATCAAAAATTACTTAATAAAATACATTTAAATAACAAATAATATTA
66 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66800123 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
131 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
*
66800188 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGGCCTA-TTGCAAGAGTGAGTATTCATGGCAGAC
196 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
66800251 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
1 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
*
66800316 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATGTTA
66 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
*
66800381 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAATATCTTTAAA
131 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
66800446 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
196 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
66800510 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
1 AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
*
66800575 GTCCCTAATAGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
66 GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
*
66800640 CAAATTCATCATTTAACATAAAAAATTCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
131 CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
66800705 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAA
196 ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAA
66800748 CGATCTTAAA
Statistics
Matches: 1772, Mismatches: 15, Indels: 6
0.99 0.01 0.00
Matches are distributed among these distances:
257 52 0.03
258 254 0.14
259 1330 0.75
260 136 0.08
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (259 bp):
AAAACAACCCACATTTGTAATAATTTCATATCCAATCCTTGTATTTTTACTACTTTAACAATTTA
GTCCCTAATCGATAAATTTATCAAAAATTACTTAACAAAATACATTTAAATAACAAATAATATTA
CAAATTCATCATTTAACATAAAAAAATCATTAGATTCATTAATGGAATCATTAAAAATCTTTAAA
ACTTTCAAAATCGAAGGTACGGGCTAGCTAGACCTAGTTGCAAGAGTGAGTATTCATGGCAGAC
Found at i:66801415 original size:21 final size:21
Alignment explanation
Indices: 66801391--66801430 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
66801381 GACGGTTGTG
*
66801391 ATATTATATTATAATGGTTTT
1 ATATTATATTATAAAGGTTTT
* *
66801412 ATATTTTATTCTAAAGGTT
1 ATATTATATTATAAAGGTT
66801431 AAATTTGTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.55
Consensus pattern (21 bp):
ATATTATATTATAAAGGTTTT
Found at i:66808232 original size:8 final size:8
Alignment explanation
Indices: 66808221--66808263 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
66808211 GCAAATCCCA
*
66808221 AAATGCCG
1 AAATGCTG
66808229 AAATGCTG
1 AAATGCTG
66808237 AAATGCTG
1 AAATGCTG
*
66808245 AAATG-TCA
1 AAATGCT-G
66808253 AAATGCTG
1 AAATGCTG
66808261 AAA
1 AAA
66808264 AGTCGAAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
7 1 0.03
8 28 0.93
9 1 0.03
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (8 bp):
AAATGCTG
Found at i:66808240 original size:16 final size:16
Alignment explanation
Indices: 66808213--66808263 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
66808203 CTATATCAGC
* *
66808213 AAATCCCAAAATGCCG
1 AAATGCCAAAATGCTG
**
66808229 AAATGCTGAAATGCTG
1 AAATGCCAAAATGCTG
*
66808245 AAATGTCAAAATGCTG
1 AAATGCCAAAATGCTG
66808261 AAA
1 AAA
66808264 AGTCGAAAGA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.20
Consensus pattern (16 bp):
AAATGCCAAAATGCTG
Found at i:66808240 original size:24 final size:24
Alignment explanation
Indices: 66808213--66808263 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
66808203 CTATATCAGC
*
66808213 AAATCCCAAAATGCCGAAATGCTG
1 AAATCCCAAAATGCCAAAATGCTG
* ** *
66808237 AAATGCTGAAATGTCAAAATGCTG
1 AAATCCCAAAATGCCAAAATGCTG
66808261 AAA
1 AAA
66808264 AGTCGAAAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.20
Consensus pattern (24 bp):
AAATCCCAAAATGCCAAAATGCTG
Found at i:66810235 original size:49 final size:49
Alignment explanation
Indices: 66810160--66810257 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
66810150 AAAATGCCAA
* * *
66810160 AATTCTGGCATTTCGTGGGCTTGTGAGTGTGAGAGTGCTCAGAAGACGT
1 AATTCTGGCATTTCATGGGCTCGTGAGTGTGAGAGTGCTCACAAGACGT
*
66810209 AATTCTGGCATTTCATGGGCTCGTGAGTGTGCGAGTGCTCACAAGACGT
1 AATTCTGGCATTTCATGGGCTCGTGAGTGTGAGAGTGCTCACAAGACGT
66810258 TTAGAAATCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (49 bp):
AATTCTGGCATTTCATGGGCTCGTGAGTGTGAGAGTGCTCACAAGACGT
Found at i:66810833 original size:65 final size:65
Alignment explanation
Indices: 66810729--66810860 Score: 246
Period size: 65 Copynumber: 2.0 Consensus size: 65
66810719 CCCCTAGGGT
66810729 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATAACATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATAACATGTTATTATTATCTGA
**
66810794 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATAACATGTTATTATTATCTGA
66810859 TA
1 TA
66810861 CATGGGACTG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATAACATGTTATTATTATCTGA
Found at i:66817064 original size:27 final size:27
Alignment explanation
Indices: 66817027--66817230 Score: 257
Period size: 27 Copynumber: 7.6 Consensus size: 27
66817017 TAAATTGTAC
66817027 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
66817054 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
66817081 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66817107 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
66817135 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
66817162 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66817189 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66817216 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66817231 GACTAATATA
Statistics
Matches: 155, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66824938 original size:27 final size:27
Alignment explanation
Indices: 66824901--66825098 Score: 196
Period size: 27 Copynumber: 7.6 Consensus size: 27
66824891 TAAATTGTAC
66824901 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
66824928 AGCACTAAGTGTGCGATTTGAC----T
1 AGCACTAAGTGTGCGATTTGACTATGT
** *
66824951 A-CACT-A-TGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
66824974 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
* *
66825002 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66825029 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * * *
66825057 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
66825084 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
66825099 GACTTAATAT
Statistics
Matches: 143, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
20 10 0.07
21 1 0.01
22 4 0.03
23 3 0.02
25 4 0.03
26 1 0.01
27 96 0.67
28 24 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:66826465 original size:49 final size:50
Alignment explanation
Indices: 66826373--66826471 Score: 132
Period size: 49 Copynumber: 2.0 Consensus size: 50
66826363 TAAATTTTAT
*
66826373 AAGGGGTTAAAGTCAGTTAACACCTCGTGTTCGACCCCGGTCGGTTTCGG
1 AAGGGGTTAAAGTCAGTTAACACCTCGTGTTCGACCCCGGTCGGTCTCGG
* *
66826423 AAGGGTTTAAAGTC-GTTAA-ACCTCGTGTTCG-CTCCGATGTCGGTCTCGG
1 AAGGGGTTAAAGTCAGTTAACACCTCGTGTTCGACCCCG--GTCGGTCTCGG
66826472 TATTCGGGGT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
47 4 0.09
48 12 0.27
49 15 0.34
50 13 0.30
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.28
Consensus pattern (50 bp):
AAGGGGTTAAAGTCAGTTAACACCTCGTGTTCGACCCCGGTCGGTCTCGG
Found at i:66828448 original size:47 final size:48
Alignment explanation
Indices: 66828228--66828800 Score: 381
Period size: 44 Copynumber: 12.3 Consensus size: 48
66828218 ATCGGCCCTG
*
66828228 TCACATA-ATTACACTCTTCACATTCATCACA-CGGCCATTAGGCCTTA
1 TCACATATAATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTA
* *
66828275 TCAC-TAT-AT-CAAATTT-ACATGTCAAC-CA-CGGCCATTAGG-CTTA
1 TCACATATAATAC-ACTTTCACAT-TCATCACATCGGCCATTAGGCCTTA
*
66828318 GTCACAT-T-ATACA-TTT-ACATT-ATCGAGCATCGGCTA-TA-GCCTTA
1 -TCACATATAATACACTTTCACATTCATC-A-CATCGGCCATTAGGCCTTA
* *
66828362 TCGACATAT-ATA-AC-TTCGCATTCATCACTTCGG-CATTAGGCCTTA
1 TC-ACATATAATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
66828407 TCACATATAATACACTTTTCACA-TCATCAC-TCGGCCGTTAGGCC-TA
1 TCACATATAATACAC-TTTCACATTCATCACATCGGCCATTAGGCCTTA
* * * *
66828453 TAAGATATGATACTACTTTTCACATT-ATCACATC-G-CGTTAGG-CTTA
1 TCACATATAATAC-AC-TTTCACATTCATCACATCGGCCATTAGGCCTTA
*
66828499 TCAC--ATAATAC-CATTCACATTCATCACATC-GCCATTAGG-CTTA
1 TCACATATAATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* * * *
66828542 TCATA-ATATATAAAC-TTCACATTCAGCAGCATCGGCCGTTAGGCCTTA
1 TCACATATA-ATACACTTTCACATTCATCA-CATCGGCCATTAGGCCTTA
*
66828590 TTCACATAT-ATAATCAC-TTCAAATTCATCACATCGGCCATTAGGCCTTTTA
1 -TCACATATAAT-A-CACTTTCACATTCATCACATCGGCCATTAGGCC--TTA
66828641 TCACATAT-ATAC-CTTTCACATATCATCACAT-GGCCATTTAGG-CTTA
1 TCACATATAATACACTTTCACAT-TCATCACATCGGCCA-TTAGGCCTTA
66828687 T-AGGCATATAAATAC-CTTTCACAATTCATACACATCGGCCATTAGGCCTTA
1 TCA--CATAT-AATACACTTTCAC-ATTCAT-CACATCGGCCATTAGGCCTTA
* * * * *
66828738 TGGATAATATATATCCCCTTTCACATTCA-CACATC-GCCATTAAGGCGTTA
1 T-CA-CATATA-ATACACTTTCACATTCATCACATCGGCCATT-AGGCCTTA
66828788 TCACATAT-ATACA
1 TCACATATAATACA
66828801 TTCCTCACGT
Statistics
Matches: 433, Mismatches: 36, Indels: 115
0.74 0.06 0.20
Matches are distributed among these distances:
41 10 0.02
42 11 0.03
43 28 0.06
44 62 0.14
45 51 0.12
46 49 0.11
47 49 0.11
48 31 0.07
49 57 0.13
50 51 0.12
51 14 0.03
52 12 0.03
53 8 0.02
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (48 bp):
TCACATATAATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:66828535 original size:136 final size:139
Alignment explanation
Indices: 66828356--66828799 Score: 373
Period size: 136 Copynumber: 3.1 Consensus size: 139
66828346 ATCGGCTATA
* * * *
66828356 GCCTTATCGACATATATAACTTCGCATTCATCACTTCGGCATTAGGCCTTATCACATATAATACA
1 GCCTTATC-ACATATATACCTTCACATTCATCACATCGCCATTAGG-CTTATCACATATAATACA
* * *
66828421 CTTTTCACA-TCATCAC-TCGGCCGTTAGGCCTA-TAAGATATGATACT-ACTTTTCACATT-AT
64 C-TTTCACATTCATCACATCGGCCGTTAGGCCTATTAACATAT-ATAATCAC--TTCAAATTCAT
*
66828481 CACATC-G-CGTTAG
125 CACATCGGCCATTAG
* *
66828494 G-CTTATCACATA-ATACCATTCACATTCATCACATCGCCATTAGGCTTATCATA-ATATATAAA
1 GCCTTATCACATATATACC-TTCACATTCATCACATCGCCATTAGGCTTATCACATATA-ATACA
* *
66828556 C-TTCACATTCAGCAGCATCGGCCGTTAGGCCTTATTCACATATATAATCACTTCAAATTCATCA
64 CTTTCACATTCATCA-CATCGGCCGTTAGGCC-TATTAACATATATAATCACTTCAAATTCATCA
66828620 CATCGGCCATTAG
127 CATCGGCCATTAG
*
66828633 GCCTTTTATCACATATATACCTTTCACATATCATCACATGGCCATTTAGGCTTAT-AGGCATATA
1 GCC--TTATCACATATATACC-TTCACAT-TCATCACATCGCCA-TTAGGCTTATCA--CATAT-
* * *
66828697 AATAC-CTTTCACAATTCATACACATCGGCCATTAGGCCTTATGGATA-ATATAT-ATCCCCTTT
58 AATACACTTTCAC-ATTCAT-CACATCGGCCGTTAGGCC-TAT-TA-ACATATATAAT-CAC-TT
*
66828759 CACATTCA-CACATC-GCCATTAAG
116 CAAATTCATCACATCGGCCATT-AG
*
66828782 GCGTTATCACATATATAC
1 GCCTTATCACATATATAC
66828800 ATTCCTCACG
Statistics
Matches: 254, Mismatches: 23, Indels: 49
0.78 0.07 0.15
Matches are distributed among these distances:
133 6 0.02
134 8 0.03
135 18 0.07
136 49 0.19
137 20 0.08
138 10 0.04
139 6 0.02
140 1 0.00
142 10 0.04
143 12 0.05
144 14 0.06
145 10 0.04
146 2 0.01
147 25 0.10
148 33 0.13
149 20 0.08
150 10 0.04
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (139 bp):
GCCTTATCACATATATACCTTCACATTCATCACATCGCCATTAGGCTTATCACATATAATACACT
TTCACATTCATCACATCGGCCGTTAGGCCTATTAACATATATAATCACTTCAAATTCATCACATC
GGCCATTAG
Found at i:66828749 original size:99 final size:95
Alignment explanation
Indices: 66828503--66828798 Score: 279
Period size: 99 Copynumber: 3.0 Consensus size: 95
66828493 GGCTTATCAC
*
66828503 ATAATACCATTCAC-ATTCATCACATC-GCCATTAGG-CTTATCATAATATATAAAC-TTCACAT
1 ATAATACC-TTCACAATTCATCACATCGGCCATTAGGCCTTATCATAATATAT-ACCTTTCACAT
* *
66828564 TCAGCAGCATCGGCC-GTTAGGCCTTATTCACATAT
64 TCA-CA-CAT-GGCCATTTAGG-CTTATACACATAT
*
66828599 ATAAT-CACTTCA-AATTCATCACATCGGCCATTAGGCCTTTTATCA-CATATATACCTTTCACA
1 ATAATAC-CTTCACAATTCATCACATCGGCCATTAGGCC--TTATCATAATATATACCTTTCACA
**
66828661 TATCATCACATGGCCATTTAGGCTTATAGGCATAT
63 T-TCA-CACATGGCCATTTAGGCTTATACACATAT
*
66828696 A-AATACCTTTCACAATTCATACACATCGGCCATTAGGCCTTATGGATAATATATATCCCCTTTC
1 ATAATACC-TTCACAATTCAT-CACATCGGCCATTAGGCCTTAT-CATAATATATA---CCTTTC
* *
66828760 ACATTCACACATCGCCATTAAGGCGTTAT-CACATAT
60 ACATTCACACATGGCCATTTAGGC-TTATACACATAT
66828796 ATA
1 ATA
66828799 CATTCCTCAC
Statistics
Matches: 167, Mismatches: 13, Indels: 35
0.78 0.06 0.16
Matches are distributed among these distances:
95 17 0.10
96 19 0.11
97 27 0.16
98 29 0.17
99 36 0.22
100 21 0.13
101 8 0.05
102 10 0.06
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (95 bp):
ATAATACCTTCACAATTCATCACATCGGCCATTAGGCCTTATCATAATATATACCTTTCACATTC
ACACATGGCCATTTAGGCTTATACACATAT
Found at i:66830171 original size:48 final size:49
Alignment explanation
Indices: 66830100--66830532 Score: 609
Period size: 47 Copynumber: 9.0 Consensus size: 49
66830090 NNNNNNNNNN
*
66830100 ATATGTGATAAGGCCTAACGGCCGATGTGATGAATGT-AAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66830148 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
66830197 ATATGTGATAAGGCCTAACGGCCGACTGTGTATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGA-TGTG-ATGAATGTGAAAGTGTATAT
*
66830248 ATATGTGATTAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATATGTGA-TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * *
66830296 ATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGCGAAGGT-TGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
66830344 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
66830391 ATATGTGATAAGGCCTAATGGCCGATGTTATGAATGTGAAAGTG--TAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66830438 ATAT-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * *
66830484 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTTGAAAGTGTATA
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATG-TGAAAGTGTATA
66830533 AATTTGATAA
Statistics
Matches: 354, Mismatches: 20, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
46 45 0.13
47 107 0.30
48 97 0.27
49 35 0.10
50 21 0.06
51 32 0.09
52 17 0.05
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (49 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
Found at i:66830326 original size:47 final size:47
Alignment explanation
Indices: 66830100--66830543 Score: 622
Period size: 48 Copynumber: 9.3 Consensus size: 47
66830090 NNNNNNNNNN
*
66830100 ATATGTGATAAGGCCTAACGGCCGATGTGATGAATGT-AAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
66830148 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
66830197 ATATGTGATAAGGCCTAACGGCCGACTGTGTATGAATGTGAAAGTGTATAT
1 ATATGTGATAAGGCCTAATGGCCGA-TGTG-ATGAATGTGAAAGTG--TAT
*
66830248 ATATGTGATTAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGA-TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
66830296 ATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGCGAAGGTTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-TGTAT
*
66830344 ATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
66830391 ATATGTGATAAGGCCTAATGGCCGATGTTATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
66830438 ATAT-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
66830484 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTTGAAAGTGTAT
1 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATG-TGAAAGTGTAT
* *
66830532 AAATTTGATAAG
1 ATATGTGATAAG
66830544 TCCCGAAGCG
Statistics
Matches: 365, Mismatches: 24, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
46 45 0.12
47 108 0.30
48 109 0.30
49 35 0.10
50 19 0.05
51 32 0.09
52 17 0.05
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:66830385 original size:95 final size:96
Alignment explanation
Indices: 66830100--66830532 Score: 624
Period size: 95 Copynumber: 4.5 Consensus size: 96
66830090 NNNNNNNNNN
66830100 ATATGTGATAAGGCCTAACGGCCGATGTGATGAATGT-AAAGTGTATATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66830164 AATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 AATGGCCGATGTGATGAATGTGAAAGTG--TAT
66830197 ATATGTGATAAGGCCTAACGGCCGACTGTGTATGAATGTGAAAGTGTATATATATGTGATTAAGG
1 ATATGTGATAAGGCCTAACGGCCGA-TGTG-ATGAATGTGAAAGTGTATATATATGTGA-TAAGG
*
66830262 CCTAACGGCCGATGTGATGAATGTGAAAGTGTAT
63 CCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * *
66830296 ATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGCGAAGGT-TGTATATATGTGATAAGGCCT
1 ATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
*
66830360 AATAGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
66830391 ATATGTGATAAGGCCTAATGGCCGATGTTATGAATGTGAAAGTG--TATATAT-TGATAAGGCCT
1 ATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
66830453 AATGGCCGATGTGATGAATGTGAAAGTGTAT
66 AATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * ** * * *
66830484 ATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTTGAAAGTGTATA
1 ATATGTGATAAGGCCTAACGGCCGATGTGATGAATG-TGAAAGTGTATA
66830533 AATTTGATAA
Statistics
Matches: 307, Mismatches: 21, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
93 69 0.22
94 15 0.05
95 76 0.25
96 14 0.05
97 37 0.12
98 7 0.02
99 35 0.11
100 19 0.06
101 35 0.11
ACGTcount: A:0.32, C:0.10, G:0.29, T:0.29
Consensus pattern (96 bp):
ATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:66830707 original size:34 final size:37
Alignment explanation
Indices: 66830664--66830739 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 37
66830654 CCGAGCTCTA
*
66830664 AAGACCCGATGACTACGTGTGG-GATT-TGTCC-GGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
66830698 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
66830735 AAGAC
1 AAGAC
66830740 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 20 0.54
35 4 0.11
36 5 0.14
37 8 0.22
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:66833657 original size:39 final size:38
Alignment explanation
Indices: 66833614--66833863 Score: 220
Period size: 39 Copynumber: 6.7 Consensus size: 38
66833604 GCTCCTCGTT
*
66833614 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAATCGCA
*
66833653 CAAATGCCTTCGGGACTT-----GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAA-TCGCA
66833687 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAA-TCGCA
* *
66833726 CAAATGCCTTC-GGACTTA--CCGGATTAGTACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAATCGCA
* *
66833761 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA-ATCGCA
* * * * *
66833799 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGT-A-ATCGCA
66833840 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
66833864 ACATCATTCA
Statistics
Matches: 184, Mismatches: 13, Indels: 27
0.82 0.06 0.12
Matches are distributed among these distances:
33 6 0.03
34 30 0.16
35 18 0.10
36 10 0.05
37 11 0.06
38 27 0.15
39 42 0.23
40 28 0.15
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAATCGCA
Found at i:66833806 original size:38 final size:38
Alignment explanation
Indices: 66833614--66833817 Score: 223
Period size: 39 Copynumber: 5.5 Consensus size: 38
66833604 GCTCCTCGTT
* *
66833614 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAA-TCGCA
1 CAAATGCCTTC-GGACTTA-CCCGGAAT-TAGTAACTCGCA
*
66833653 CAAATGCCTTCGGGACTT-----GATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTACCCGGAATTAGTAACTCGCA
*
66833687 CAAATGCCTTCGGGACTTACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTACCCGGAATTAGTAACTCGCA
66833726 CAAATGCCTTCGGACTTA-CCGG-ATTAGT-ACTCGCA
1 CAAATGCCTTCGGACTTACCCGGAATTAGTAACTCGCA
*
66833761 CAAATGCCTTCGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTA-CCCGGAATTAGTAACTCGCA
66833799 CAAATGCCTTCGGATCTTA
1 CAAATGCCTTCGGA-CTTA
66833818 GTCCGGATAT
Statistics
Matches: 149, Mismatches: 3, Indels: 25
0.84 0.02 0.14
Matches are distributed among these distances:
33 7 0.05
34 29 0.19
35 20 0.13
36 9 0.06
37 10 0.07
38 26 0.17
39 44 0.30
40 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTACCCGGAATTAGTAACTCGCA
Found at i:66833812 original size:73 final size:75
Alignment explanation
Indices: 66833614--66833864 Score: 288
Period size: 73 Copynumber: 3.3 Consensus size: 75
66833604 GCTCCTCGTT
* *
66833614 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATCGCACAAATGCCTTCGGGACTT----GAT
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTACTCGCACAAATGCCTTC-GGACTTACCGGA-
66833674 TTAGTAACTCGCA
63 TTAGTAACTCGCA
66833687 CAAATGCCTTCGGGACTTA-CCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTACCGGATT
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAATGCCTTCGGACTTACCGGATT
66833751 AGT-ACTCGCA
65 AGTAACTCGCA
*
66833761 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAATGCCTTCGGA-CTTA--CCGG
* * *
66833824 ATATGGTCACTTAGCA
62 AT-TAGTAAC-TCGCA
66833840 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66833865 CATCATTCAA
Statistics
Matches: 157, Mismatches: 5, Indels: 25
0.84 0.03 0.13
Matches are distributed among these distances:
72 20 0.13
73 70 0.45
74 22 0.14
75 5 0.03
76 8 0.05
77 3 0.02
78 8 0.05
79 10 0.06
80 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (75 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAATGCCTTCGGACTTACCGGATTA
GTAACTCGCA
Found at i:66841704 original size:37 final size:39
Alignment explanation
Indices: 66841530--66841789 Score: 295
Period size: 40 Copynumber: 6.7 Consensus size: 39
66841520 GCTCCTCGTT
* *
66841530 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGT-ATCTCGCA
* *
66841570 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTATCTCGCA
66841610 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTA--TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTATCTCGCA
*
66841648 CAAATGCCTTC-GGATCTTAGTCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTATCTCGCA
*
66841687 CAAATGCCTTC-GG-CTTAGTCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTATCTCGCA
* * *
66841724 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGT-ATC-TCGCA
66841765 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66841790 CATCATTCAA
Statistics
Matches: 199, Mismatches: 9, Indels: 24
0.86 0.04 0.10
Matches are distributed among these distances:
37 47 0.24
38 25 0.13
39 31 0.16
40 82 0.41
41 14 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTATCTCGCA
Found at i:66843517 original size:27 final size:26
Alignment explanation
Indices: 66843471--66843565 Score: 84
Period size: 27 Copynumber: 3.6 Consensus size: 26
66843461 ACATAGCCAT
* *
66843471 CAGCGATGGT-AATATAATCGACACA
1 CAGCCATGGTAAATATGATCGACACA
66843496 CAGCCATGGGTAAATATGATCGACACA
1 CAGCCAT-GGTAAATATGATCGACACA
* * * * *
66843523 GAGTCATTGATAAATATGATAGGCACA
1 CAGCCA-TGGTAAATATGATCGACACA
*
66843550 TAGCCACTGGTAAATA
1 CAGCCA-TGGTAAATA
66843566 CGATTTGCAT
Statistics
Matches: 56, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
25 6 0.11
26 3 0.05
27 46 0.82
28 1 0.02
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.22
Consensus pattern (26 bp):
CAGCCATGGTAAATATGATCGACACA
Found at i:66845897 original size:43 final size:42
Alignment explanation
Indices: 66845790--66845897 Score: 123
Period size: 41 Copynumber: 2.6 Consensus size: 42
66845780 ATTCGGGGTG
* *
66845790 TTACATGTAAGACCATGTTTGGGACATCGGCATCATATTTGA
1 TTACATGTAAGACCACGTTTGGGACATCGGCATCATATGTGA
* * *
66845832 TT-CGTGTAAGACC-CTGTCTGGGATAGT-GGCATCGATATGTGA
1 TTACATGTAAGACCAC-GTTTGGGACA-TCGGCATC-ATATGTGA
66845874 TTACATGTAAGACCACGTTTGGGA
1 TTACATGTAAGACCACGTTTGGGA
66845898 GTAGGATATG
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
41 24 0.44
42 12 0.22
43 17 0.31
44 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCACGTTTGGGACATCGGCATCATATGTGA
Found at i:66852176 original size:14 final size:14
Alignment explanation
Indices: 66852157--66852184 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
66852147 TTTCTGAAAA
66852157 GTATGATGTTCTGT
1 GTATGATGTTCTGT
66852171 GTATGATGTTCTGT
1 GTATGATGTTCTGT
66852185 TTCTGTATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.29, T:0.50
Consensus pattern (14 bp):
GTATGATGTTCTGT
Found at i:66852408 original size:27 final size:26
Alignment explanation
Indices: 66852370--66852429 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
66852360 ATATATATAT
* *
66852370 ATATATGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
66852396 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
66852423 ATATCTG
1 ATATCTG
66852430 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:66858774 original size:46 final size:46
Alignment explanation
Indices: 66858724--66859036 Score: 431
Period size: 46 Copynumber: 6.8 Consensus size: 46
66858714 TGTTTAGGCA
66858724 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
66858770 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
66858816 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
66858862 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
66858908 TCCGAACTCATTGAGTTGAGTCCGAGTT---TGA-GAGATG-TAACTGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T-G
* * *
66858952 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
66859000 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66859037 GCGGGTTACA
Statistics
Matches: 240, Mismatches: 16, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
42 3 0.01
43 7 0.03
44 1 0.00
45 1 0.00
46 219 0.91
48 1 0.00
49 5 0.02
50 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:66868693 original size:7 final size:7
Alignment explanation
Indices: 66868665--66868695 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
66868655 AATGATGAAT
*
66868665 GATGAGG
1 GATGATG
66868672 GATGATG
1 GATGATG
66868679 GATGATG
1 GATGATG
66868686 GATGATG
1 GATGATG
66868693 GAT
1 GAT
66868696 TAGGAAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.45, T:0.26
Consensus pattern (7 bp):
GATGATG
Found at i:66873527 original size:50 final size:52
Alignment explanation
Indices: 66873442--66873538 Score: 135
Period size: 50 Copynumber: 1.9 Consensus size: 52
66873432 GCTTGATTTG
****
66873442 ATTTAATGATGCAAACTTTAACTAACATGGGAGTTACATAATACATGTCATA
1 ATTTAATGATGCAAACTTTAACTAACACAACAGTTACATAATACATGTCATA
*
66873494 ATTT-ATGATGCAAAC-TTAACTAACACAACAGTTACATAATGCATG
1 ATTTAATGATGCAAACTTTAACTAACACAACAGTTACATAATACATG
66873539 ACTTTATTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 25 0.62
51 11 0.28
52 4 0.10
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.31
Consensus pattern (52 bp):
ATTTAATGATGCAAACTTTAACTAACACAACAGTTACATAATACATGTCATA
Found at i:66879560 original size:31 final size:31
Alignment explanation
Indices: 66879522--66879585 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
66879512 CCTTTTCATA
66879522 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
66879553 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
66879584 TT
1 TT
66879586 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:66879828 original size:24 final size:24
Alignment explanation
Indices: 66879792--66879872 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 24
66879782 CTGGAGAACT
* *
66879792 AGCCTCTTTTAATAATTGGGGAAAA
1 AGCC-CTTTTAATAATTGGGGCATA
*
66879817 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAATTGGGGCATA
66879841 AGCCC-TTTAATAATTGGGGCATA
1 AGCCCTTTTAATAATTGGGGCATA
66879864 AGCCCTTTT
1 AGCCCTTTT
66879873 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
23 22 0.43
24 25 0.49
25 4 0.08
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32
Consensus pattern (24 bp):
AGCCCTTTTAATAATTGGGGCATA
Found at i:66879853 original size:23 final size:23
Alignment explanation
Indices: 66879799--66879871 Score: 110
Period size: 23 Copynumber: 3.1 Consensus size: 23
66879789 ACTAGCCTCT
* *
66879799 TTTAATAATTGGGGAAAAAGCCC
1 TTTAATAATTGGGGCATAAGCCC
*
66879822 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAATTGGGGCATAAGCCC
66879846 TTTAATAATTGGGGCATAAGCCC
1 TTTAATAATTGGGGCATAAGCCC
66879869 TTT
1 TTT
66879872 TGCACTTCCT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
23 25 0.56
24 20 0.44
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (23 bp):
TTTAATAATTGGGGCATAAGCCC
Found at i:66879947 original size:20 final size:20
Alignment explanation
Indices: 66879922--66879988 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
66879912 TTATGAATAC
66879922 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
66879942 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
66879962 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
66879982 ATCATGT
1 ATCATGT
66879989 TTACTAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:66884637 original size:4 final size:4
Alignment explanation
Indices: 66884628--66884652 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
66884618 AATGCGAGTG
66884628 AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA A
66884653 GAATGCTATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:66887304 original size:46 final size:46
Alignment explanation
Indices: 66887251--66887423 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
66887241 TTGAGCATCT
66887251 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCC
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCC
* * * * *
66887297 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATG---CGA-GCGTCC
* * *
66887344 GAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCC
*
66887390 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
66887424 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 62 0.58
47 32 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCC
Found at i:66887404 original size:93 final size:93
Alignment explanation
Indices: 66887245--66887415 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
66887235 GGATAGTTGA
* * * *
66887245 GCATCTGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
66887310 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
66887338 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
*
66887403 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
66887416 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:66890371 original size:15 final size:15
Alignment explanation
Indices: 66890351--66890419 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
66890341 GTATCTTGGG
66890351 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
66890366 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
66890381 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
66890396 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
66890411 TTTCTTTAT
1 TTTCTTTAT
66890420 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:66890420 original size:30 final size:30
Alignment explanation
Indices: 66890342--66890429 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
66890332 GATAGTATCG
* * * *
66890342 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
66890372 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
66890402 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
66890430 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:66893166 original size:40 final size:39
Alignment explanation
Indices: 66893121--66893314 Score: 244
Period size: 40 Copynumber: 4.9 Consensus size: 39
66893111 GGATATAACT
* * *
66893121 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
*
66893161 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
*
66893201 ACTCGGACAAATGCCTTCGGGACTTAGCCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GGTTTAGTA
* * * * *
66893241 ACTCGCATAGATGCCTTCGGGACTTAGCCCGGATTATTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
* * *
66893280 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGGTTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTT
66893315 TCATCCAAAT
Statistics
Matches: 136, Mismatches: 16, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.27
40 95 0.70
41 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:66901347 original size:40 final size:39
Alignment explanation
Indices: 66901303--66901496 Score: 262
Period size: 40 Copynumber: 4.9 Consensus size: 39
66901293 GGATATAACT
* * *
66901303 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTT-TAGTA
*
66901343 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGTA
66901383 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG-GTTTAGTA
* * * *
66901423 ACTCGCACAGATGCCTTCAGGACTTAGCCCGGATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
* * *
66901462 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGGTTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTT
66901497 TCATCCAAAT
Statistics
Matches: 139, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.27
40 99 0.71
41 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGTA
Found at i:66904465 original size:46 final size:46
Alignment explanation
Indices: 66904412--66904584 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
66904402 TTGAGCATCC
66904412 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
* * *
66904458 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG-GTATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGAGCG--TCT
* * * *
66904505 GAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
*
66904551 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66904585 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 4 0.04
45 3 0.03
46 62 0.58
47 31 0.29
48 3 0.03
50 4 0.04
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCT
Found at i:66907304 original size:27 final size:27
Alignment explanation
Indices: 66907267--66907329 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
66907257 CCATTTCAAA
66907267 TGTC-CACACGGCCTATGACACGAGCG
1 TGTCTCACACGGCCTATGACACGAGCG
*
66907293 TGTCTCACACGGCCTATGACACGGGCG
1 TGTCTCACACGGCCTATGACACGAGCG
66907320 TGTCTCACAC
1 TGTCTCACAC
66907330 AGTCGTGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
26 4 0.11
27 31 0.89
ACGTcount: A:0.21, C:0.35, G:0.25, T:0.19
Consensus pattern (27 bp):
TGTCTCACACGGCCTATGACACGAGCG
Found at i:66909574 original size:40 final size:40
Alignment explanation
Indices: 66909537--66909761 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
66909527 GCTACTCGTT
*
66909537 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
66909577 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
66909617 CAAATGCCTTCGAG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
66909656 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
66909696 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
66909737 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
66909762 CATCATTCAA
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.20
40 118 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:66909648 original size:79 final size:79
Alignment explanation
Indices: 66909537--66909761 Score: 276
Period size: 79 Copynumber: 2.8 Consensus size: 79
66909527 GCTACTCGTT
* * * *
66909537 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGAG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
66909602 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* *
66909617 CAAATGCCTTCGAGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGAGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
66909680 GATTTAGTATCTCGCA
64 GATTTAGTAACTCGCA
* * * * *
66909696 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTC-GAGCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
66909760 GA
64 GA
66909762 CATCATTCAA
Statistics
Matches: 125, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.03
79 64 0.51
80 45 0.36
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGAGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:66909721 original size:119 final size:120
Alignment explanation
Indices: 66909537--66909761 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
66909527 GCTACTCGTT
66909537 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
66909602 ATTTAGTAAC-TCGCACAAATGCCTTCGAG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGAGACTTAGCCCGGAATTAGTATCTCGCA
* * * **
66909656 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* * *
66909718 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGAGACTTAGCCCGGA
66909762 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 6 0.07
119 64 0.70
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGAGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:66913460 original size:48 final size:48
Alignment explanation
Indices: 66913211--66913583 Score: 239
Period size: 48 Copynumber: 7.8 Consensus size: 48
66913201 GTAGGATTCT
* ** * * *
66913211 GATGCCATGCCCCAGACATGGTCTTACACTTTCTCATA-CATC-AAGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATC-TCGAGGCC
* ** * * * *
66913258 GATGTCACATCCCAGACATGGTCTTACA-TTGACTATCGCA-ATCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAG-C--TCACATCTCGAGGCC
* * * * * *
66913307 GACGCCATGTCTCAAACATGGTCTTACACTGGCTCTCACATATCCG-TGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAG--CTCACATCT-CGAGGCC
* * * *
66913357 AATGCCATGTCCTA-AGCATGGTCTTACACT-G-ACACATCTC-ATAGCC
1 GATGCCATGTCCCAGA-CATGGTCTTACACTAGCTCACATCTCGA-GGCC
66913403 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAGGCC
* * ** * * *
66913451 GATGCCATGTCCTAGACATGGTCCTACACTAGCTCTTATCTCAATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAGGCC
* * * * *
66913499 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-CTCGAGGCC
* *
66913547 GATG-CATGTCACAGACAT-GTCTTACACTAGCACACAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT
66913584 GTCACGCAAT
Statistics
Matches: 258, Mismatches: 52, Indels: 33
0.75 0.15 0.10
Matches are distributed among these distances:
45 1 0.00
46 53 0.21
47 40 0.16
48 96 0.37
49 35 0.14
50 30 0.12
51 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATCTCGAGGCC
Found at i:66913551 original size:96 final size:95
Alignment explanation
Indices: 66913209--66913580 Score: 304
Period size: 96 Copynumber: 3.9 Consensus size: 95
66913199 GGGTAGGATT
* * ** * * ** *
66913209 CTGATGCCATGCCCCAGACATGGTCTTACACT--TTCTCATACATC-AAGTCGATGTCACATCCC
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATCGTGGCCGATGCCATGTCCT
* *
66913271 AGACATGGTCTTACA-TTG-ACTATCGCAATCGAGG
65 AGACATGGTCTTACACTAGCAC-ATCTC-AT--A-G
* * * * *
66913305 CTGACGCCATGTCTCAAACATGGTCTTACACTGGCTCTCACATATCCGT-GCCAATGCCATGTCC
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-AT-CGTGGCCGATGCCATGTCC
66913369 TA-AGCATGGTCTTACACT-GACACATCTCATAG
64 TAGA-CATGGTCTTACACTAG-CACATCTCATAG
* * * * *
66913401 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-CTCGAGGCCGATGCCATGTCCTA
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCCATGTCCTA
* *
66913465 GACATGGTCCTACACTAGCTCTTATCTCA-ATG
66 GACATGGTCTTACACTAGCAC--ATCTCATA-G
*
66913497 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATG-CATGTCAC-
1 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCCATGTC-CT
66913559 AGACAT-GTCTTACACTAGCACA
65 AGACATGGTCTTACACTAGCACA
66913581 CATGTCACGC
Statistics
Matches: 225, Mismatches: 35, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
92 1 0.00
93 2 0.01
94 45 0.20
95 15 0.07
96 117 0.52
97 2 0.01
98 9 0.04
99 27 0.12
100 5 0.02
101 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (95 bp):
CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGTGGCCGATGCCATGTCCTA
GACATGGTCTTACACTAGCACATCTCATAG
Found at i:66918217 original size:49 final size:51
Alignment explanation
Indices: 66918082--66918229 Score: 246
Period size: 52 Copynumber: 2.9 Consensus size: 51
66918072 TCCTTATAGT
* *
66918082 CAAAGCTACCTTCTTCACAAAGTGGCCTTCACATAGTACCGCACTTGTGAC
1 CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
66918133 CAAAGCTATCTTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
1 CAAAGCTATC-TTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
*
66918185 C-AAGCTATC-TCTTCTCAAAGTGGCCTTCACATAGTACCACACTTG
1 CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTG
66918230 AGTCACTAGT
Statistics
Matches: 93, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
49 35 0.38
51 17 0.18
52 41 0.44
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (51 bp):
CAAAGCTATCTTCTTCACAAAGTGGCCTTCACATAGTACCACACTTGTGAC
Found at i:66924859 original size:15 final size:14
Alignment explanation
Indices: 66924818--66924857 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
66924808 AATAAAACCC
66924818 AAATTTAATTTTAAA
1 AAATTT-ATTTTAAA
*
66924833 AAAATTATTTTAAA
1 AAATTTATTTTAAA
66924847 AAATTTATTTT
1 AAATTTATTTT
66924858 TATACAAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.78
15 5 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAATTTATTTTAAA
Found at i:66925387 original size:12 final size:12
Alignment explanation
Indices: 66925370--66925394 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66925360 CTATAAAATG
66925370 AGATAAAACCTA
1 AGATAAAACCTA
66925382 AGATAAAACCTA
1 AGATAAAACCTA
66925394 A
1 A
66925395 CCTAAGTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AGATAAAACCTA
Found at i:66929647 original size:6 final size:6
Alignment explanation
Indices: 66929638--66929664 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
66929628 AATATAATAA
66929638 TAAATT TAAATT TAAATT TAAATT TAA
1 TAAATT TAAATT TAAATT TAAATT TAA
66929665 TATTAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TAAATT
Found at i:66943002 original size:11 final size:11
Alignment explanation
Indices: 66942986--66943011 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
66942976 ATTAAAGAGT
66942986 AATTTGTATGA
1 AATTTGTATGA
66942997 AATTTGTATGA
1 AATTTGTATGA
66943008 AATT
1 AATT
66943012 GCTTTAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (11 bp):
AATTTGTATGA
Found at i:66950570 original size:39 final size:40
Alignment explanation
Indices: 66950527--66950749 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
66950517 TCCTCGTTCA
* * * * *
66950527 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66950566 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66950606 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
66950646 AATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGGACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
66950686 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
66950726 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
66950750 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 116 0.73
41 7 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:66950741 original size:120 final size:119
Alignment explanation
Indices: 66950527--66950749 Score: 281
Period size: 120 Copynumber: 1.9 Consensus size: 119
66950517 TCCTCGTTCA
* * * *
66950527 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
* *
66950592 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
66950646 AATGCCTTCGGGACTTAACCCGGATTTAGTACCTCGGACA-AAGGCCTTC-GGATCTTAATCCGG
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTC--ACACAAGGCCTTCGGGA-CTTAACCCGG
* * *
66950709 ATATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
63 ATATAATAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
66950750 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
119 34 0.39
120 46 0.52
121 8 0.09
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
TAATAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:66953339 original size:13 final size:14
Alignment explanation
Indices: 66953321--66953351 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
66953311 TATGAAATCA
66953321 CCAAAA-TTAAAGT
1 CCAAAATTTAAAGT
66953334 CCAAAATTTAAAGT
1 CCAAAATTTAAAGT
66953348 CCAA
1 CCAA
66953352 TGTCCATTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.52, C:0.19, G:0.06, T:0.23
Consensus pattern (14 bp):
CCAAAATTTAAAGT
Found at i:66954560 original size:15 final size:15
Alignment explanation
Indices: 66954540--66954569 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
66954530 TGATGTAGAG
66954540 CTTTAACAGAGACAA
1 CTTTAACAGAGACAA
66954555 CTTTAACAGAGACAA
1 CTTTAACAGAGACAA
66954570 AGTATGCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (15 bp):
CTTTAACAGAGACAA
Found at i:66957809 original size:63 final size:63
Alignment explanation
Indices: 66957707--66957836 Score: 206
Period size: 63 Copynumber: 2.1 Consensus size: 63
66957697 AACAAAGGAA
* * *
66957707 GGACTTAAACTTGAATCAACCAAGAAGAAGGATCCTATCATATGCTATGAATGCAAGAAGCCG
1 GGACTCAAACTTGAATCAACCAAGAAGAAGGATCATATCATATGCTATGAATGAAAGAAGCCG
* * *
66957770 GGACTCAAGCTTGAATCTACCAAGAAGATGGATCATATCATATGCTATGAATGAAAGAAGCCG
1 GGACTCAAACTTGAATCAACCAAGAAGAAGGATCATATCATATGCTATGAATGAAAGAAGCCG
66957833 GGAC
1 GGAC
66957837 ACATCAAGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.38, C:0.18, G:0.22, T:0.21
Consensus pattern (63 bp):
GGACTCAAACTTGAATCAACCAAGAAGAAGGATCATATCATATGCTATGAATGAAAGAAGCCG
Found at i:66961805 original size:34 final size:34
Alignment explanation
Indices: 66961762--66961864 Score: 147
Period size: 34 Copynumber: 3.0 Consensus size: 34
66961752 TGTGGTTGAT
66961762 TGATTTATTTTGACCTTATCTTGTCTAGCATAAC
1 TGATTTATTTTGACCTTATCTTGTCTAGCATAAC
66961796 TGATTTATTTTGACCTTATCTTGTCTAGCATAAC
1 TGATTTATTTTGACCTTATCTTGTCTAGCATAAC
* *
66961830 TTATTT-TTTATG-CCATTAAACTTGTCTAGCATAAC
1 TGATTTATTT-TGACC-TT-ATCTTGTCTAGCATAAC
66961865 CTATTATGCC
Statistics
Matches: 64, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
33 5 0.08
34 43 0.67
35 16 0.25
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (34 bp):
TGATTTATTTTGACCTTATCTTGTCTAGCATAAC
Found at i:66963496 original size:50 final size:50
Alignment explanation
Indices: 66963425--66963606 Score: 244
Period size: 50 Copynumber: 3.7 Consensus size: 50
66963415 GGGTTATGTT
*
66963425 TGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGTATCGAGATATG
1 TGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGAGATATG
* * * *
66963475 TGATCCCATGTAAGACCATGTCTGGGATATGGTATTAGCATTGATATATG
1 TGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGAGATATG
* * *
66963525 TGATCCCATGTAAGACCATATCTGAGATATGGCATTGGCATC--GATATA
1 TGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGAGATATG
* * *
66963573 TGATCTCGTGTAAGACCATG-CTGGGACATGGCAT
1 TGATCCCATGTAAGACCATGTCTGGGATATGGCAT
66963607 CGATATGAGA
Statistics
Matches: 115, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
47 12 0.10
48 21 0.18
50 82 0.71
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
TGATCCCATGTAAGACCATGTCTGGGATATGGCATTGGCATCGAGATATG
Found at i:66969244 original size:40 final size:40
Alignment explanation
Indices: 66969186--66969351 Score: 242
Period size: 40 Copynumber: 4.2 Consensus size: 40
66969176 ACTCGAATTC
*
66969186 TCGCACACTAAGTTCCATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* *
66969226 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAG
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* * *
66969266 TCGCACATTAAGTGCCATACATAGCTGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* * * *
66969306 TCGCACACCAAGTGCCATACAGAGTCGAAGCTATCTTAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
66969346 TCGCAC
1 TCGCAC
66969352 GTAGTCGAAT
Statistics
Matches: 113, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 113 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.22
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:66977223 original size:27 final size:27
Alignment explanation
Indices: 66977183--66977294 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
66977173 AGGAAGCGTC
*
66977183 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* * *
66977210 CCGGTGGCTCTGCCACATATT-TTTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
66977237 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* * *
66977265 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
66977291 CTGG
1 CTGG
66977295 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
26 8 0.12
27 43 0.62
28 18 0.26
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:66977291 original size:54 final size:54
Alignment explanation
Indices: 66977183--66977294 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
66977173 AGGAAGCGTC
* * *
66977183 CTGGTGGCTATGCCACAATTATCTGATCCGGTGGCTCTGCCACATATTTTTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCCGGTGACTCTGCCACATATATCTGTT
* * * * *
66977237 CTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCCGGTGACTCTGCCACATATATCTGTT
66977291 CTGG
1 CTGG
66977295 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 32 0.65
55 17 0.35
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCCGGTGACTCTGCCACATATATCTGTT
Found at i:66985044 original size:27 final size:26
Alignment explanation
Indices: 66985004--66985109 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 26
66984994 AGGAAGCGTC
*
66985004 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
66985031 CAGGTGGCTCTGCCAC-TTATTTCTGTT
1 CTGGTGGCTCTGCCACATTA--TCTGAT
66985058 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
66985086 CTCGTGACTCTGTCACATTATCTG
1 CTGGTGGCTCTGCCACATTATCTG
66985110 TTCTAGCAGC
Statistics
Matches: 66, Mismatches: 8, Indels: 10
0.79 0.10 0.12
Matches are distributed among these distances:
25 3 0.05
27 46 0.70
28 14 0.21
29 3 0.05
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:66985110 original size:54 final size:53
Alignment explanation
Indices: 66985004--66985113 Score: 132
Period size: 54 Copynumber: 2.0 Consensus size: 53
66984994 AGGAAGCGTC
* *
66985004 CTGGTGGCTATGCCACAATTATCTGATCAGGTGGCTCTGCCACTTATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCACGTGACTCTGCCACTTA-TTCTGTT
* * * *
66985058 CTGGTGGCTCTGCCACGATTATCTGTATCTCGTGACTCTGTCACATTA-TCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCACGTGACTCTGCCAC-TTATTCTGTT
66985112 CT
1 CT
66985114 AGCAGCCATG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
54 31 0.65
55 14 0.29
56 3 0.06
ACGTcount: A:0.15, C:0.25, G:0.21, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCACGTGACTCTGCCACTTATTCTGTT
Found at i:66985444 original size:20 final size:20
Alignment explanation
Indices: 66985419--66985461 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
66985409 GGATTCGGAG
66985419 TGGCCACTCGTTCTGCACTA
1 TGGCCACTCGTTCTGCACTA
66985439 TGGCCACTCGTTCTGCACTA
1 TGGCCACTCGTTCTGCACTA
66985459 TGG
1 TGG
66985462 TTTTCTTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.14, C:0.33, G:0.23, T:0.30
Consensus pattern (20 bp):
TGGCCACTCGTTCTGCACTA
Found at i:66991105 original size:45 final size:44
Alignment explanation
Indices: 66991050--66991134 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
66991040 CCAAAACATG
* *
66991050 TGTCATATATATCACGAACTCAGACCATAACTCAATGAGTTTGGA
1 TGTCACATATATCACGAACTCAGA-CACAACTCAATGAGTTTGGA
* *
66991095 TGTCACATATATCATGAACTCAGACACAATTCAATGAGTT
1 TGTCACATATATCACGAACTCAGACACAACTCAATGAGTT
66991135 CAGATCATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 14 0.39
45 22 0.61
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.29
Consensus pattern (44 bp):
TGTCACATATATCACGAACTCAGACACAACTCAATGAGTTTGGA
Found at i:66994295 original size:22 final size:22
Alignment explanation
Indices: 66994257--66994306 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
66994247 TTTGAGTAAA
*
66994257 TTATTTAATTGAGAAATCA-AT
1 TTATTTAATTAAGAAATCATAT
* *
66994278 TTATTTAAATTAATAAATTATAT
1 TTATTT-AATTAAGAAATCATAT
66994301 TTATTT
1 TTATTT
66994307 TGGAAAATAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.25
22 10 0.42
23 8 0.33
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (22 bp):
TTATTTAATTAAGAAATCATAT
Found at i:67001045 original size:21 final size:21
Alignment explanation
Indices: 67001020--67001072 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
67001010 TTTTATTTTT
*
67001020 CACACGGGCGTGTGCCTTAGA
1 CACACGGGCGTGTCCCTTAGA
* *
67001041 CACACGGCCGTGTCCCTTAGC
1 CACACGGGCGTGTCCCTTAGA
*
67001062 CACACGAGCGT
1 CACACGGGCGT
67001073 ATAAGATTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.17
Consensus pattern (21 bp):
CACACGGGCGTGTCCCTTAGA
Found at i:67006503 original size:47 final size:47
Alignment explanation
Indices: 67006439--67006528 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 47
67006429 ATATGCTGGA
* *
67006439 ATATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATAATAT
1 ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATAATAT
* * *
67006486 ATATATCCGGGTTAAATCGCGCAGGCTTAGTGTTGGTACTATA
1 ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATA
67006529 TCCGGGCTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (47 bp):
ATATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTAATATAATAT
Found at i:67006717 original size:40 final size:40
Alignment explanation
Indices: 67006671--67006754 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
67006661 GTATGATACA
*
67006671 TGATAATGACCAGGTACGTATTATGTACTTATATGTTAAT
1 TGATAATGACCAGGTACGCATTATGTACTTATATGTTAAT
67006711 TGATAATGACCAGGTACGCATTATGTACTTATATGTTAAT
1 TGATAATGACCAGGTACGCATTATGTACTTATATGTTAAT
67006751 TGAT
1 TGAT
67006755 TTCAAGGTGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (40 bp):
TGATAATGACCAGGTACGCATTATGTACTTATATGTTAAT
Found at i:67007047 original size:14 final size:14
Alignment explanation
Indices: 67007028--67007063 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
67007018 ATTTAAAGTT
67007028 CGTTTTAAATGACA
1 CGTTTTAAATGACA
67007042 CGTTTTAAATGACA
1 CGTTTTAAATGACA
67007056 CGTTTTAA
1 CGTTTTAA
67007064 TTGTTTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (14 bp):
CGTTTTAAATGACA
Found at i:67014412 original size:47 final size:47
Alignment explanation
Indices: 67014348--67014437 Score: 144
Period size: 47 Copynumber: 1.9 Consensus size: 47
67014338 ATATGCTGGA
* *
67014348 ATATATCCGGGTTAAATCCCGCAGGCTTCGTACTGGTAATATAATAT
1 ATATATCCGGGTTAAATCCCACAGGCTTAGTACTGGTAATATAATAT
* *
67014395 ATATATCCGGGTTAAATCCCACAGGCTTAGTGCTGGTACTATA
1 ATATATCCGGGTTAAATCCCACAGGCTTAGTACTGGTAATATA
67014438 TCCGGGCTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (47 bp):
ATATATCCGGGTTAAATCCCACAGGCTTAGTACTGGTAATATAATAT
Found at i:67016185 original size:28 final size:28
Alignment explanation
Indices: 67016145--67016204 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
67016135 TTAATTATCA
67016145 AATCATGTAAGACATAAACAAAGACAAT
1 AATCATGTAAGACATAAACAAAGACAAT
67016173 AATCATGTAAGACATAAACAAAGACAAT
1 AATCATGTAAGACATAAACAAAGACAAT
67016201 AATC
1 AATC
67016205 TATTCTAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.57, C:0.15, G:0.10, T:0.18
Consensus pattern (28 bp):
AATCATGTAAGACATAAACAAAGACAAT
Found at i:67016274 original size:33 final size:33
Alignment explanation
Indices: 67016232--67016295 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
67016222 AAACATCAAT
*
67016232 TGGTAAGATTAACGAAAGATAAATAAAAGAAAC
1 TGGTAAGATTAACAAAAGATAAATAAAAGAAAC
67016265 TGGTAAGATTAACAAAAGATAAATAAAAGAA
1 TGGTAAGATTAACAAAAGATAAATAAAAGAA
67016296 TAGAAGAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.59, C:0.05, G:0.17, T:0.19
Consensus pattern (33 bp):
TGGTAAGATTAACAAAAGATAAATAAAAGAAAC
Found at i:67016668 original size:5 final size:6
Alignment explanation
Indices: 67016653--67016677 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
67016643 TTAAACTGAA
67016653 AAAAAG AAAAAG AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG A
67016678 GAGAGCTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:67022017 original size:46 final size:45
Alignment explanation
Indices: 67021967--67022142 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
67021957 TGTTTGGGCA
67021967 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
67022013 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
67022060 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
67022106 CCCGAGCTCGTTGAGTTGAGTCCGGGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67022143 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:67025004 original size:20 final size:20
Alignment explanation
Indices: 67024976--67025022 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
67024966 CGACAATGTT
*
67024976 TAAGTTGTGAAGGACTATGG
1 TAAGTTGTGAAAGACTATGG
* *
67024996 TATGTTGTGAAAGATTATGG
1 TAAGTTGTGAAAGACTATGG
67025016 TAAGTTG
1 TAAGTTG
67025023 CAAGTTAGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.32, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGG
Found at i:67025897 original size:13 final size:13
Alignment explanation
Indices: 67025881--67025914 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
67025871 CAGGGACATA
67025881 GGCGTGTGTCCAG
1 GGCGTGTGTCCAG
67025894 GGCGTGTGTCCAG
1 GGCGTGTGTCCAG
67025907 GGCGTGTG
1 GGCGTGTG
67025915 AAGTTTGCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.06, C:0.21, G:0.50, T:0.24
Consensus pattern (13 bp):
GGCGTGTGTCCAG
Found at i:67027307 original size:46 final size:46
Alignment explanation
Indices: 67027257--67027432 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
67027247 TGGTTGAGCA
*
67027257 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
67027303 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
67027350 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
67027396 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67027433 GCGGTTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 63 0.59
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:67027413 original size:93 final size:93
Alignment explanation
Indices: 67027254--67027424 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67027244 GGATGGTTGA
* * *
67027254 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
67027319 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
*
67027347 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
67027412 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
67027425 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:67027689 original size:19 final size:20
Alignment explanation
Indices: 67027654--67027691 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67027644 ATAAGGTGGT
67027654 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
67027674 AAGAT-ATGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
67027692 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:67034519 original size:49 final size:50
Alignment explanation
Indices: 67034439--67034684 Score: 316
Period size: 49 Copynumber: 4.9 Consensus size: 50
67034429 ATCTATTGTA
*
67034439 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
67034489 -GGTCTCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
67034539 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
67034589 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
67034639 -GGCCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
67034685 GCTTTGGCTA
Statistics
Matches: 168, Mismatches: 26, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 48 0.29
51 38 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:67034576 original size:28 final size:28
Alignment explanation
Indices: 67034544--67034627 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
67034534 AACTTCGATC
67034544 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
67034572 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
67034594 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
67034622 ACGTGT
1 ACGTGT
67034628 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:67037061 original size:46 final size:46
Alignment explanation
Indices: 67037011--67037186 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67037001 TGGTTGAGCA
67037011 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67037057 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
67037102 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
67037150 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
67037187 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:67037167 original size:93 final size:93
Alignment explanation
Indices: 67037008--67037179 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67036998 GGATGGTTGA
* *
67037008 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67037073 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67037101 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
67037166 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
67037180 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67041934 original size:43 final size:43
Alignment explanation
Indices: 67041878--67041993 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
67041868 TAAGACATAT
* * * *
67041878 CGATGCCATTGTCCCAGATAGGGTCTTACACGA-AATCGATT-A-A
1 CGATACCAATGTCCCAGACATGGTCTTACAC-ATAATC--TTAATA
67041921 CGATACCAATGTCCCAGACATGGTCTTACACATAATCTTAATA
1 CGATACCAATGTCCCAGACATGGTCTTACACATAATCTTAATA
* *
67041964 CAATTCCAATGTCCCAGACATGGTCTTACA
1 CGATACCAATGTCCCAGACATGGTCTTACA
67041994 TGTAATCACA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
41 2 0.03
42 2 0.03
43 60 0.94
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (43 bp):
CGATACCAATGTCCCAGACATGGTCTTACACATAATCTTAATA
Found at i:67043176 original size:40 final size:40
Alignment explanation
Indices: 67043092--67043272 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 40
67043082 TTGAATGCTG
* *
67043092 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTA-AGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGA-T-ACTAAT
**
67043131 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGATACTAAT
67043172 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
* * ** *
67043212 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACT-AAT
67043252 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
67043273 ATTGAATGAG
Statistics
Matches: 126, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
39 3 0.02
40 109 0.87
41 13 0.10
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
Found at i:67043296 original size:39 final size:39
Alignment explanation
Indices: 67043172--67043322 Score: 135
Period size: 40 Copynumber: 3.8 Consensus size: 39
67043162 AGATACTAAT
* ** * *
67043172 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACT-AAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTA-TAAAA
** *
67043212 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTATAAAA
* *
67043252 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTAATATAA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-ATAAAA
* *
67043292 -CCGGGATATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
67043323 GAGCTAAATC
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 29 0.31
40 66 0.69
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTATAAAA
Found at i:67050401 original size:40 final size:40
Alignment explanation
Indices: 67050317--67050497 Score: 201
Period size: 40 Copynumber: 4.5 Consensus size: 40
67050307 TTGAATGCTG
* *
67050317 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTA-AGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGA-T-ACTAAT
**
67050356 ATCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGATACTAAT
67050397 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
* * ** *
67050437 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACT-AAT
67050477 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
67050498 ATTGAATGAG
Statistics
Matches: 126, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
39 3 0.02
40 109 0.87
41 13 0.10
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
Done.