Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 198 of 345
Found at i:67050521 original size:39 final size:39
Alignment explanation
Indices: 67050397--67050547 Score: 135
Period size: 40 Copynumber: 3.8 Consensus size: 39
67050387 AGATACTAAT
* ** * *
67050397 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACT-AAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTA-TAAAA
** *
67050437 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTATAAAA
* *
67050477 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTAATATAA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-ATAAAA
* *
67050517 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
67050548 GAGCTAAATC
Statistics
Matches: 95, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 29 0.31
40 66 0.69
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTATAAAA
Found at i:67056978 original size:17 final size:17
Alignment explanation
Indices: 67056956--67056990 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
67056946 AACTGATAAC
67056956 AACCCCATATCAAATCT
1 AACCCCATATCAAATCT
*
67056973 AACCCCATCTCAAATCT
1 AACCCCATATCAAATCT
67056990 A
1 A
67056991 TCTTTGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (17 bp):
AACCCCATATCAAATCT
Found at i:67060304 original size:40 final size:40
Alignment explanation
Indices: 67060225--67060428 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
67060215 CGGGATTTAA
* *
67060225 CCGGATATAGCT-ACTCGCTC-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
67060264 CCGGATATAGTAACTCGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
67060304 CCGGATATAGTAACTCGCACAAATGCCTT-GAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCG-GGACTTAGC
* * * *
67060344 CCGGATGTAATAACTCGCGCAAATGCCTTCGGAACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
67060384 CCGGA-ACTAGTCACTAGTGCA-AAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACT--CGCACAAATGCCTTCGGGACTTAGC
67060425 CCGG
1 CCGG
67060429 TTATCATCCA
Statistics
Matches: 144, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 18 0.12
40 99 0.69
41 24 0.17
42 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:67068299 original size:40 final size:40
Alignment explanation
Indices: 67068206--67068382 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
67068196 AAGCCAAGTA
* * *
67068206 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
67068244 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
67068284 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
67068324 CCTT-GAGGACTTAGCCCGGATGTAATAACTCGCGCAAATG
1 CCTTCG-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
67068364 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
67068383 TTATCATCCA
Statistics
Matches: 123, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
38 12 0.10
39 18 0.15
40 93 0.76
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:67073586 original size:38 final size:39
Alignment explanation
Indices: 67073515--67073680 Score: 183
Period size: 38 Copynumber: 4.3 Consensus size: 39
67073505 ATTTGATGTG
* * ** *
67073515 TATCCGGGCTTAAAGACCCACAGGCTTTATGCTGGAATTA
1 TATCCGGG-TTAAAGTCCCGCAGGCTTCGTGCTGGTATTA
67073555 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTA
* *
67073593 TATCCGGGTTAAA-TCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTA
* * * *
67073631 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCTGGTGTTA
1 TATCCG-GGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTA
* *
67073671 TGTTCGGGTT
1 TATCCGGGTT
67073681 TTATACCTTG
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
38 61 0.57
39 14 0.13
40 32 0.30
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.33
Consensus pattern (39 bp):
TATCCGGGTTAAAGTCCCGCAGGCTTCGTGCTGGTATTA
Found at i:67077463 original size:46 final size:46
Alignment explanation
Indices: 67077396--67077570 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
67077386 TGTAACCCGC
67077396 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
67077442 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCACAT
* * * * *
67077492 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
*
67077535 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
67077571 ATGCCCAAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 1 0.01
46 63 0.57
47 26 0.24
48 1 0.01
49 1 0.01
50 6 0.05
51 4 0.04
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
Found at i:67077516 original size:93 final size:93
Alignment explanation
Indices: 67077404--67077575 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
67077394 GCCCATAAGT
* *
67077404 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
67077469 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
67077497 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
67077562 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
67077576 CAAATATCCT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:67080336 original size:43 final size:43
Alignment explanation
Indices: 67080282--67080395 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 43
67080272 ACACATATCG
* * * * *
67080282 ATGCCACTGTCCCAAACAAGGTCTTACACGAAAT-TGATTAACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAT-ACA
* * *
67080325 ATGCTAATGTCCCAGACATGGTCTCACACGTAATCTCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
*
67080368 ATGCCAATGTCCTAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
67080396 TGTGATCACT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 56 0.95
44 3 0.05
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
Found at i:67103326 original size:42 final size:43
Alignment explanation
Indices: 67103229--67103442 Score: 233
Period size: 43 Copynumber: 5.0 Consensus size: 43
67103219 ATATGGTACA
* * * *
67103229 ATGCCAATGTCCCTGAC-GTGGTCTTACATGTAATCTCATATCG
1 ATGCCAACGTCCCAGACAG-GGTCTTACACGTAATCACATATCG
* *
67103272 ATGCC-ACTGTCCCAGACAGGGTCTTACTCGTAA-CACATATAG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACACGTAATCACATATCG
*
67103314 ATGCCAACGTCCCAGACAAGGTCTTACACGT-ATCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACACGTAATCACATATCG
*
67103356 ATGCCAACGTCCTA-A-ATGTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACA-G-GGTCTTACACGTAATCACATATCG
* ** **
67103399 ATGCCAATGTTTCAGACTTGGTCTTACACGTAATCACATATCG
1 ATGCCAACGTCCCAGACAGGGTCTTACACGTAATCACATATCG
67103442 A
1 A
67103443 CGTCTATATA
Statistics
Matches: 145, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
40 1 0.01
41 2 0.01
42 67 0.46
43 73 0.50
44 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTCTTACACGTAATCACATATCG
Found at i:67115261 original size:28 final size:28
Alignment explanation
Indices: 67115229--67115282 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
67115219 AAAGATACCC
67115229 AGATTAAAATACTTATAACTTAGAATTT
1 AGATTAAAATACTTATAACTTAGAATTT
*
67115257 AGATTAAAATACTTGTAACTTAGAAT
1 AGATTAAAATACTTATAACTTAGAAT
67115283 CTAATAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.37
Consensus pattern (28 bp):
AGATTAAAATACTTATAACTTAGAATTT
Found at i:67115518 original size:34 final size:33
Alignment explanation
Indices: 67115475--67115539 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
67115465 CGCATCAGTA
* *
67115475 ACAGTTCAGTTTCAGT-TAGGGCCTTAGCCCATT
1 ACAGTTCAGTATCAGTAT-GGGACTTAGCCCATT
67115508 ACAGTATCAGTATCAGTATGGGACTTAGCCCA
1 ACAGT-TCAGTATCAGTATGGGACTTAGCCCA
67115540 GTTTAGAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 5 0.18
34 22 0.79
35 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (33 bp):
ACAGTTCAGTATCAGTATGGGACTTAGCCCATT
Found at i:67118388 original size:25 final size:25
Alignment explanation
Indices: 67118354--67118403 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
67118344 TAACAACAGC
*
67118354 AGAACTACAATCATCACACTCAGAT
1 AGAACTACAATCAGCACACTCAGAT
*
67118379 AGAACTACAATTAGCACACTCAGAT
1 AGAACTACAATCAGCACACTCAGAT
67118404 GCACCCACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.44, C:0.26, G:0.10, T:0.20
Consensus pattern (25 bp):
AGAACTACAATCAGCACACTCAGAT
Found at i:67126180 original size:28 final size:28
Alignment explanation
Indices: 67126115--67126293 Score: 288
Period size: 28 Copynumber: 6.4 Consensus size: 28
67126105 GAGATTGGCG
* * * *
67126115 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
67126144 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
67126172 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
67126200 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
67126228 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
67126256 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
67126283 TTGAGTGTGCG
1 CTAAGTGTGCG
67126294 GACTTAATAT
Statistics
Matches: 144, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
27 23 0.16
28 106 0.74
29 15 0.10
ACGTcount: A:0.27, C:0.11, G:0.27, T:0.35
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:67128172 original size:17 final size:17
Alignment explanation
Indices: 67128150--67128182 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
67128140 ATAAGTACAC
*
67128150 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
67128167 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
67128183 CATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:67134051 original size:2 final size:2
Alignment explanation
Indices: 67134046--67134071 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
67134036 GTTTTTTTTC
67134046 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
67134072 TATATAGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:67143350 original size:11 final size:11
Alignment explanation
Indices: 67143334--67143358 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
67143324 TTTAAAAACT
67143334 AAAATTTAAAG
1 AAAATTTAAAG
67143345 AAAATTTAAAG
1 AAAATTTAAAG
67143356 AAA
1 AAA
67143359 GTAATATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (11 bp):
AAAATTTAAAG
Found at i:67153700 original size:13 final size:13
Alignment explanation
Indices: 67153664--67153700 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
67153654 ATTCCGTATT
*
67153664 ACTTAGTTGGAAA
1 ACTTAGTTGGTAA
67153677 ACTTAGTTGGTAA
1 ACTTAGTTGGTAA
67153690 ACTTAGTTGGT
1 ACTTAGTTGGT
67153701 GTTGTAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (13 bp):
ACTTAGTTGGTAA
Found at i:67187942 original size:40 final size:39
Alignment explanation
Indices: 67187910--67188216 Score: 375
Period size: 40 Copynumber: 7.7 Consensus size: 39
67187900 CCAGCATGAT
* * * *
67187910 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTC-AGACTTAGCCCGGATACATCACTAGCACGAA
** * *
67187950 TGCTCTTCAGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCA-GACTTAGCCCGGATACATCACTAGCACGAA
*
67187990 TGCTCTTCAGAGCTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCAGA-CTTAGCCCGGATACATCACTAGCACGAA
*
67188030 TGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCA-GACTTAGCCCGGATACATCACTAGCACGAA
* *
67188070 TGCTCTTCAGAACTTAGCTCGGATACATCAACTAGCATGAA
1 TGCTCTTCAG-ACTTAGCCCGGATACATC-ACTAGCACGAA
* * *
67188111 TGCTCTTCGGACTTAGCCCAGATACATCACTAGCATGAA
1 TGCTCTTCAGACTTAGCCCGGATACATCACTAGCACGAA
*
67188150 TGCTCTTCGGGACTTAGCCC-GATACATCACTAGCACGAA
1 TGCTCTTC-AGACTTAGCCCGGATACATCACTAGCACGAA
*
67188189 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTC-AGACTTAGCCCGGATACATC
67188217 GTCGAGACCT
Statistics
Matches: 240, Mismatches: 20, Indels: 15
0.87 0.07 0.05
Matches are distributed among these distances:
39 64 0.27
40 155 0.65
41 21 0.09
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (39 bp):
TGCTCTTCAGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:67188047 original size:80 final size:80
Alignment explanation
Indices: 67187910--67188212 Score: 416
Period size: 80 Copynumber: 3.8 Consensus size: 80
67187900 CCAGCATGAT
* * * * ** *
67187910 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCAGGGTTTAGCACGGATA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATA
67187975 TATCACTAGCACGAA
66 TATCACTAGCACGAA
*
67187990 TGCTCTTC-AGAGCTTAGCCCGGATACATCACTAGCATGAATGCTCTTCAGGACTTAGCCCGGAT
1 TGCTCTTCGAGA-CTTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGAT
67188054 ATATCACTAGCACGAA
65 ATATCACTAGCACGAA
* * *
67188070 TGCTCTTC-AGAACTTAGCTCGGATACATCAACTAGCATGAATGCTCTTC-GGACTTAGCCCAGA
1 TGCTCTTCGAG-ACTTAGCCCGGATACATC-ACTAGCACGAATGCTCTTCAGGACTTAGCCCGGA
* *
67188133 TACATCACTAGCATGAA
64 TATATCACTAGCACGAA
* *
67188150 TGCTCTTCGGGACTTAGCCC-GATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGAT
67188213 CATCGTCGAG
Statistics
Matches: 202, Mismatches: 16, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
78 18 0.09
79 25 0.12
80 138 0.68
81 21 0.10
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATA
TATCACTAGCACGAA
Found at i:67188126 original size:120 final size:119
Alignment explanation
Indices: 67187897--67188216 Score: 439
Period size: 120 Copynumber: 2.7 Consensus size: 119
67187887 CGAATACACG
* * * * * *
67187897 TCACCAGCATGATTGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCAGGG
1 TCACTAGCATGAATGCTCTTCG-GACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGGA
* * *
67187962 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCAGAGCTTAGCCCGGATACA
65 CTTAGCACGGATACATCACTAGCACGAATGCTCTTCAGAGCTTAGCCCAGATACA
*
67188017 TCACTAGCATGAATGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGAA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGGA
* * *
67188082 CTTAGCTCGGATACATCAACTAGCATGAATGCTCTTCGGA-CTTAGCCCAGATACA
65 CTTAGCACGGATACATC-ACTAGCACGAATGCTCTTCAGAGCTTAGCCCAGATACA
* *
67188137 TCACTAGCATGAATGCTCTTCGGGACTTAGCCC-GATACATCACTAGCACGAATGCTCTTCGGGA
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGGA
*
67188201 CTTAGCCCGGAT-CATC
65 CTTAGCACGGATACATC
67188217 GTCGAGACCT
Statistics
Matches: 180, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
118 4 0.02
119 39 0.22
120 116 0.64
121 21 0.12
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (119 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGGAC
TTAGCACGGATACATCACTAGCACGAATGCTCTTCAGAGCTTAGCCCAGATACA
Found at i:67190822 original size:47 final size:47
Alignment explanation
Indices: 67190759--67191433 Score: 1154
Period size: 47 Copynumber: 14.4 Consensus size: 47
67190749 CCCTTCGGGA
* *
67190759 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67190806 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
67190853 CTTATCACATATATAC-CTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
67190899 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67190946 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67190993 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
67191040 CTTATGACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
67191087 CTTATCACATATAAACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
67191134 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67191181 CTTATCACATATATACACTTTCACAGTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67191228 CTTATCACATATATACACTTTCACAGTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67191275 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
67191322 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
67191369 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
67191416 CTTATCACATATACACAC
1 CTTATCACATATATACAC
67191434 CTTGTACACC
Statistics
Matches: 600, Mismatches: 27, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
46 46 0.08
47 554 0.92
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:67191143 original size:22 final size:22
Alignment explanation
Indices: 67191115--67191190 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
67191105 TTTCACATTC
67191115 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
67191137 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
67191161 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
67191184 ATCACAT
1 ATCACAT
67191191 ATATACACTT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:67191284 original size:22 final size:22
Alignment explanation
Indices: 67191256--67191378 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
67191246 TTTCACAGTC
67191256 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
67191278 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
*
67191302 CATCACATCGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
** * * *
67191325 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
67191349 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
67191372 ATCACAT
1 ATCACAT
67191379 ATACACACTT
Statistics
Matches: 69, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 29 0.42
23 9 0.13
24 9 0.13
25 22 0.32
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:67198318 original size:29 final size:29
Alignment explanation
Indices: 67198275--67198400 Score: 148
Period size: 29 Copynumber: 4.4 Consensus size: 29
67198265 GAAAGCATGT
* *
67198275 ATATGAATGTCATTTGGGGCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
* * *
67198304 GTATGAATTTGATTTGGGCCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
* *
67198333 ATACGAATGTAATTTAGGCCTAATGGGCC
1 ATATGAATGTAATTTGGGCCTAATGGGCC
*
67198362 ATATGAATG-AGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTA-ATTTGGGCCTAATGGGCC
*
67198390 ATATGTATGTA
1 ATATGAATGTA
67198401 TGTAGACTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
28 23 0.28
29 59 0.72
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATGAATGTAATTTGGGCCTAATGGGCC
Found at i:67198400 original size:57 final size:58
Alignment explanation
Indices: 67198275--67198400 Score: 164
Period size: 58 Copynumber: 2.2 Consensus size: 58
67198265 GAAAGCATGT
* * * * **
67198275 ATATGAATGTCATTTGGGGCTAATGGGCCGTATGAATTTGATTTGGGCCTAATGGGCC
1 ATATGAATGTAATTTAGGCCTAATGGGCCATATGAATGAGATTTGGGCCTAATGGGCC
* *
67198333 ATACGAATGTAATTTAGGCCTAATGGGCCATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGTAATTTAGGCCTAATGGGCCATATGAATGAGATTTGGGCCTAATGGGCC
*
67198390 ATATGTATGTA
1 ATATGAATGTA
67198401 TGTAGACTTT
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
57 24 0.41
58 34 0.59
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.31
Consensus pattern (58 bp):
ATATGAATGTAATTTAGGCCTAATGGGCCATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:67202661 original size:16 final size:16
Alignment explanation
Indices: 67202620--67202662 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
67202610 GTAGATCGGC
*
67202620 AAAAGCCGAAATGCCG
1 AAAAGCCAAAATGCCG
* * *
67202636 AGAAGTCAAAATGTCG
1 AAAAGCCAAAATGCCG
67202652 AAAAGCCAAAA
1 AAAAGCCAAAA
67202663 GTTTGGCTAC
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.09
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:67202943 original size:29 final size:29
Alignment explanation
Indices: 67202872--67202967 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
67202862 GAAAGCATGT
*
67202872 ATATGAATGTGATTTGGGCCTAATGGGCT
1 ATATGAATGTGATTTGGGCCTAATGGGCC
67202901 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
** * *
67202930 ATATGAATAAGA-TTAGGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
67202958 ATATGTATGT
1 ATATGAATGT
67202968 CTGTAGACTT
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
28 21 0.36
29 38 0.64
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:67205458 original size:46 final size:45
Alignment explanation
Indices: 67205407--67205531 Score: 178
Period size: 46 Copynumber: 2.7 Consensus size: 45
67205397 GGTTGAGCAT
* *
67205407 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAACG
* *
67205452 TTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 -CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAACG
* *
67205498 CCTGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 CC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67205532 GGGGCGGGTT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
45 1 0.01
46 70 0.99
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAACG
Found at i:67208093 original size:25 final size:25
Alignment explanation
Indices: 67208059--67208107 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
67208049 TCATTTTATT
*
67208059 AGAGACTGCCTAGAGAGAGTTGAGC
1 AGAGACTGCCTAGAGAGAGCTGAGC
67208084 AGAGACTGCCTAGAGAGAGCTGAG
1 AGAGACTGCCTAGAGAGAGCTGAG
67208108 AAAGAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.37, T:0.14
Consensus pattern (25 bp):
AGAGACTGCCTAGAGAGAGCTGAGC
Found at i:67213125 original size:93 final size:93
Alignment explanation
Indices: 67212961--67213130 Score: 252
Period size: 93 Copynumber: 1.8 Consensus size: 93
67212951 GGATGGTTGA
* *
67212961 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTACGGATACGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTACGGATACGAAGGGTCGAACTCGTTGAGT
67213026 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * * *
67213054 GCATTCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGGGT-GAGCTTGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTACGGATACGAA-GGGTCGAACTCGTTGAG
67213118 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
67213131 TACTTTGGGG
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
93 66 0.97
94 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTACGGATACGAAGGGTCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67221334 original size:39 final size:39
Alignment explanation
Indices: 67221280--67221636 Score: 545
Period size: 39 Copynumber: 9.2 Consensus size: 39
67221270 TAATGGAGAA
67221280 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67221319 TTATATCCAGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
67221358 TTATATCCGGGCTAAGTCTCAAAGGCATTCTTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67221397 TTATATCCGGCCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
67221436 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
67221475 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
67221514 TTATATCCGGGCTAAGCCCCGATGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
67221553 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
67221592 TTATATCTGGGTTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
67221631 TTATAT
1 TTATAT
67221637 TCAGGCTTAA
Statistics
Matches: 295, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 284 0.96
40 11 0.04
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:67227077 original size:39 final size:39
Alignment explanation
Indices: 67227023--67227379 Score: 545
Period size: 39 Copynumber: 9.2 Consensus size: 39
67227013 TAATGGAGAA
67227023 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67227062 TTATATCCAGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
67227101 TTATATCCGGGCTAAGTCTCAAAGGCATTCTTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67227140 TTATATCCGGCCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
67227179 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
67227218 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
67227257 TTATATCCGGGCTAAGCCCCGATGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
67227296 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
67227335 TTATATCTGGGTTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
67227374 TTATAT
1 TTATAT
67227380 TCAGGCTTAA
Statistics
Matches: 295, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 284 0.96
40 11 0.04
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:67232815 original size:39 final size:39
Alignment explanation
Indices: 67232761--67233115 Score: 536
Period size: 39 Copynumber: 9.2 Consensus size: 39
67232751 TAATGGAGAA
67232761 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67232800 TTATATCCAGGCTAAGTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
67232839 TTATATCCGGGCTAAGTCTCAAAGGCATTCTTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67232878 TTATATCCGGCCTAAGTCTCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
67232917 TTATATCCGGGCTAAGT-CCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
67232955 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
67232994 TTATATCCGGGCTAAGCCCCGATGGCATTCGTGCTAGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
67233033 TTATATCCGGGCTAAG-CCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * *
67233071 TTATATCTGGGTTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
67233110 TTATAT
1 TTATAT
67233116 TCAGGCTTAA
Statistics
Matches: 292, Mismatches: 21, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
38 67 0.23
39 217 0.74
40 8 0.03
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:67232995 original size:116 final size:116
Alignment explanation
Indices: 67232761--67233115 Score: 532
Period size: 116 Copynumber: 3.1 Consensus size: 116
67232751 TAATGGAGAA
*
67232761 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCAGGCTAAGTCCCGAAGGC
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGT-CCGAAGGC
* * * *
67232826 ATTCATGCTGGTGTTATATCCGGGCTAAGTCTCAAAGGCATTCTTGCTGGTG
65 ATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
67232878 TTATATCCGGCCTAAGTCTCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGGCA
*
67232943 TTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
66 TTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
67232994 TTATATCCGGGCTAAGCCCCGATGGCATTCGTGCTAGTGTTATATCCGGGCTAAGCCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGGCA
* * * * *
67233059 TTCGTGCTGGTGTTATATCTGGGTTAAAGTCCCGTAGGC-TTTGTGCTGGTA
66 TTCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
67233110 TTATAT
1 TTATAT
67233116 TCAGGCTTAA
Statistics
Matches: 217, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
116 153 0.71
117 64 0.29
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.30
Consensus pattern (116 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCGAAGGCA
TTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:67233140 original size:40 final size:39
Alignment explanation
Indices: 67233062--67233148 Score: 120
Period size: 40 Copynumber: 2.2 Consensus size: 39
67233052 GAAGGCATTC
* * *
67233062 GTGCTGGTGTTATATCTGGGTTAAAGTCCCGTAGGCTTT
1 GTGCTGGTATTATATCAGGCTTAAAGTCCCGTAGGCTTT
*
67233101 GTGCTGGTATTATATTCAGGCTTAAAGTCCCGTATGCTTT
1 GTGCTGGTATTATA-TCAGGCTTAAAGTCCCGTAGGCTTT
*
67233141 GTGGTGGT
1 GTGCTGGT
67233149 GATTTGATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 13 0.31
40 29 0.69
ACGTcount: A:0.16, C:0.15, G:0.30, T:0.39
Consensus pattern (39 bp):
GTGCTGGTATTATATCAGGCTTAAAGTCCCGTAGGCTTT
Found at i:67234985 original size:39 final size:39
Alignment explanation
Indices: 67234931--67235186 Score: 336
Period size: 39 Copynumber: 6.6 Consensus size: 39
67234921 AAATTACATG
* *
67234931 GGCATTCATGCTGGTGTTATATCCGGGCTAAGTCTCAAA
1 GGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCTCGAA
* *
67234970 GGCATTCTTGCTGGTGTTATATCCGGCCTAAGTCTCGAA
1 GGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCTCGAA
*
67235009 GGCATTCGTGCTGGTGTTATATCCGAGCTAAGT-TCCGAA
1 GGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCT-CGAA
* *
67235048 GGCATTCGTGCTGGTGTTATATCCGGGCTAAGCCCCGAA
1 GGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCTCGAA
* * * * *
67235087 GGCATTCGTGATGCTGTTATATCCGGGCTAAGCCCCGAT
1 GGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCTCGAA
* *
67235126 GGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGTA
1 GGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCTCGAA
* *
67235166 GGC-TTTGTGCTGGTATTATAT
1 GGCATTCGTGCTGGTGTTATAT
67235187 TCGGTGTTAA
Statistics
Matches: 195, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 184 0.94
40 10 0.05
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (39 bp):
GGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCTCGAA
Found at i:67235211 original size:40 final size:39
Alignment explanation
Indices: 67234939--67235219 Score: 180
Period size: 39 Copynumber: 7.2 Consensus size: 39
67234929 TGGGCATTCA
* * **
67234939 TGCTGGTGTTATATCCGGGCT-AAGTCTCAAAGGCATTCT-
1 TGCTGGTATTATATCCGGGCTAAAGTCCCGCAGGC-TT-TG
* * * * *
67234978 TGCTGGTGTTATATCCGGCCT-AAGTCTCGAAGGCATTCG
1 TGCTGGTATTATATCCGGGCTAAAGTCCCGCAGGC-TTTG
* * * * *
67235017 TGCTGGTGTTATATCCGAGCT-AAGTTCCGAAGGCATTCG
1 TGCTGGTATTATATCCGGGCTAAAGTCCCGCAGGC-TTTG
* * * *
67235056 TGCTGGTGTTATATCCGGGCT-AAGCCCCGAAGGCATTCG
1 TGCTGGTATTATATCCGGGCTAAAGTCCCGCAGGC-TTTG
* * * * *
67235095 TGATGCTGTTATATCCGGGCT-AAGCCCCG-ATGGCATTCG
1 TGCTGGTATTATATCCGGGCTAAAGTCCCGCA-GGC-TTTG
* *
67235134 TGCTGGTGTTATATCCGGGCTAAAGTCCCGTAGGCTTTG
1 TGCTGGTATTATATCCGGGCTAAAGTCCCGCAGGCTTTG
* * *
67235173 TGCTGGTATTATATTCGGTGTTAAAGTCCCGCATGCTTTG
1 TGCTGGTATTATATCCGG-GCTAAAGTCCCGCAGGCTTTG
*
67235213 TGGTGGT
1 TGCTGGT
67235220 GATTGGATTT
Statistics
Matches: 215, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
38 1 0.00
39 179 0.83
40 34 0.16
41 1 0.00
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.32
Consensus pattern (39 bp):
TGCTGGTATTATATCCGGGCTAAAGTCCCGCAGGCTTTG
Found at i:67241818 original size:42 final size:42
Alignment explanation
Indices: 67241763--67241891 Score: 197
Period size: 42 Copynumber: 3.1 Consensus size: 42
67241753 AGGATGTCAT
* *
67241763 TTCGTGTAAGACCATGCCTGGGACATTGGCATCAATATGAGA
1 TTCGTATAAGACCATGTCTGGGACATTGGCATCAATATGAGA
* *
67241805 TTCGTATATGACCATGTCTGGGACATTGGCATCAATATCAGA
1 TTCGTATAAGACCATGTCTGGGACATTGGCATCAATATGAGA
*
67241847 TTCGTGA-AAGACCATGTCTGGGACATTGGCATCGATATGAGA
1 TTCGT-ATAAGACCATGTCTGGGACATTGGCATCAATATGAGA
67241889 TTC
1 TTC
67241892 ATGAAGACCG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
42 78 0.99
43 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (42 bp):
TTCGTATAAGACCATGTCTGGGACATTGGCATCAATATGAGA
Found at i:67242874 original size:33 final size:33
Alignment explanation
Indices: 67242832--67242896 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
67242822 TGGTAAGATT
*
67242832 GTTGTGGAAATGGTGATGGTTTAGTGGTTATGA
1 GTTGTGGAAATGGTGATGGTTTAGTGATTATGA
67242865 GTTGTGGAAATGGTGATGGTTTAGTGATTATG
1 GTTGTGGAAATGGTGATGGTTTAGTGATTATG
67242897 GGTTTATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.22, C:0.00, G:0.38, T:0.40
Consensus pattern (33 bp):
GTTGTGGAAATGGTGATGGTTTAGTGATTATGA
Found at i:67248847 original size:42 final size:42
Alignment explanation
Indices: 67248796--67248999 Score: 238
Period size: 42 Copynumber: 4.9 Consensus size: 42
67248786 TACCGAGATG
67248796 TGAT-TTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
1 TGATATTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
* *
67248837 TGATATTCATGTAAGACCATGTCTGGGACATTGGCATTGACA
1 TGATATTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
* * *
67248879 TGAGATTCGTGTAAGATCATGTCTGGGACATTGGCATCGATA
1 TGATATTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
* * *
67248921 TGAGATTCGTGTAAGACAATAG-CTGGG-CTATTGGCATCGATA
1 TGATATTCATGTAAGACCAT-GTCTGGGAC-ATTGGCATCGATA
* * *
67248963 T-ACTATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 TGA-TAT-TCATGTAAGACCATGTCTGGGACATTGGCAT
67249000 AGTATGAGTT
Statistics
Matches: 141, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
41 6 0.04
42 117 0.83
43 18 0.13
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGATATTCATGTAAGACCATGTCTGGGACATTGGCATCGATA
Found at i:67261392 original size:47 final size:47
Alignment explanation
Indices: 67261244--67261412 Score: 154
Period size: 48 Copynumber: 3.6 Consensus size: 47
67261234 TTATTTGTGT
* * *
67261244 GCCAGTGTAAGA-CATGTCTGGGACATGTATCAGCCACATTATGAG--A
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCA--ATGAGATA
* * *
67261290 GCCAGTGTAAGACCATGAT-TGGGACATGGCATTGGCATTGAGATGAG-T-
1 GCCAGTGTAAGACCATG-TCTGGGACAT-GCATCGGC-CTCA-ATGAGATA
*
67261338 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCAATGACGATA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCAATGA-GATA
*
67261385 GCCAGTGTAAGACCATGTCTGAGACATG
1 GCCAGTGTAAGACCATGTCTGGGACATG
67261413 ATATCAACAA
Statistics
Matches: 100, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
44 4 0.04
45 3 0.03
46 21 0.21
47 35 0.35
48 36 0.36
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCAATGAGATA
Found at i:67264524 original size:38 final size:38
Alignment explanation
Indices: 67264468--67264547 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
67264458 GATGTGTATT
* * *
67264468 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
67264506 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
67264544 CGGG
1 CGGG
67264548 TCTTCGTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:67264600 original size:43 final size:43
Alignment explanation
Indices: 67264519--67264707 Score: 265
Period size: 43 Copynumber: 4.4 Consensus size: 43
67264509 GATAAATCCC
* * * *
67264519 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGTCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
67264560 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
67264603 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* * * *
67264646 GCAGGCTTCGTGCTGGTGATGTGTATTTGGGCCTTCATGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
67264689 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
67264708 AATGATATGT
Statistics
Matches: 132, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
41 15 0.11
42 2 0.02
43 115 0.87
ACGTcount: A:0.13, C:0.22, G:0.34, T:0.31
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:67266490 original size:93 final size:93
Alignment explanation
Indices: 67266383--67266554 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
67266373 CGCCCATAAG
* *
67266383 CGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67266448 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
67266476 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67266541 ATGAGTTCGGATGC
66 ACGAGTTCGGATGC
67266555 TCAACCATCA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67266551 original size:46 final size:46
Alignment explanation
Indices: 67266376--67266551 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
67266366 TGTAACCCGC
* * * *
67266376 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
67266422 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
67266472 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
67266515 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
67266552 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67266570 original size:46 final size:45
Alignment explanation
Indices: 67266384--67266570 Score: 136
Period size: 46 Copynumber: 4.0 Consensus size: 45
67266374 GCCCATAAGC
* * ***
67266384 GAACTCGAACTCAACTCAACGAGCTCGG--GCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCAAC-CAT-CAT-AGT
*
67266430 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATC-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCAT-AGT
* *
67266477 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A-AGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCATAGT
*
67266523 GAACTCGGACTCAACTCAATGAGTTCGGATGCTCAACCATCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCATAGT
67266569 GA
1 GA
67266571 CATGTCACTT
Statistics
Matches: 113, Mismatches: 14, Indels: 28
0.73 0.09 0.18
Matches are distributed among these distances:
44 9 0.08
45 2 0.02
46 58 0.51
47 31 0.27
48 4 0.04
49 5 0.04
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCATAGT
Found at i:67277133 original size:41 final size:41
Alignment explanation
Indices: 67277083--67277212 Score: 179
Period size: 41 Copynumber: 3.2 Consensus size: 41
67277073 CGCGTATATG
* * * *
67277083 AATTTAGAGGTACCGAAGTACAACCAGGGGCACATATTTGC
1 AATTCAGAGGTACCGAAGTACAATCAAGGGCACATATGTGC
* *
67277124 AATTCAGAGGTACTGAAGTACAATCAAGGGCATATATGTGC
1 AATTCAGAGGTACCGAAGTACAATCAAGGGCACATATGTGC
* * *
67277165 AATTCAGGGGTACCGAAGTACAATTAAGGGCACGTATGTGC
1 AATTCAGAGGTACCGAAGTACAATCAAGGGCACATATGTGC
67277206 AATTCAG
1 AATTCAG
67277213 GGAATAATTA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 78 1.00
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (41 bp):
AATTCAGAGGTACCGAAGTACAATCAAGGGCACATATGTGC
Found at i:67277214 original size:20 final size:21
Alignment explanation
Indices: 67277158--67277214 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
67277148 CAAGGGCATA
*
67277158 TATGTGCAATTCAGGGGTACCG
1 TATGTGCAATTCA-GGGCACCG
* * *
67277180 -AAGTACAATTAAGGGCA-CG
1 TATGTGCAATTCAGGGCACCG
67277199 TATGTGCAATTCAGGG
1 TATGTGCAATTCAGGG
67277215 AATAATTAAC
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
19 2 0.07
20 16 0.59
21 9 0.33
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (21 bp):
TATGTGCAATTCAGGGCACCG
Found at i:67283494 original size:47 final size:47
Alignment explanation
Indices: 67283425--67283634 Score: 157
Period size: 46 Copynumber: 4.5 Consensus size: 47
67283415 AGGGTAAGGT
* * *
67283425 GTCGATGCTATGTCCTAGACATGGAATTACACTGGCTCAT-ATCTC-AA
1 GTCGATGCCATGTCCCAGACATGG-ATTACACTGACT-ATCATCTCGAA
* *
67283472 GTCGATGCCATGTCCCAGACATGGTTTACACTGACTATCATCTCGTA
1 GTCGATGCCATGTCCCAGACATGGATTACACTGACTATCATCTCGAA
** * *
67283519 G-CTGATG-CATGTCCCAGACATGTCTTACACTGACT-TACATCTTGAG
1 GTC-GATGCCATGTCCCAGACATGGATTACACTGACTAT-CATCTCGAA
* * ** * *
67283565 GCCAATG-CATGTCCCAGACATGTCTTACACTAGCCT-TCATTTC-AA
1 GTCGATGCCATGTCCCAGACATGGATTACACT-GACTATCATCTCGAA
* *
67283610 TGCCGATGCCATTTCCCAGACATGG
1 -GTCGATGCCATGTCCCAGACATGG
67283635 TCTTACATTA
Statistics
Matches: 137, Mismatches: 18, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
45 4 0.03
46 86 0.63
47 47 0.34
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGATTACACTGACTATCATCTCGAA
Found at i:67283530 original size:46 final size:45
Alignment explanation
Indices: 67283475--67283641 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 45
67283465 ATCTCAAGTC
67283475 GATGCCATGTCCCAGACATGGT-TTACACTGACTATCATCTCGTAGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCG-AGCT
* *
67283522 GATGCATGTCCCAGACATGTCTTACACTGACT-TACATCTTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGA-GCT
* * * * *
67283568 AATGCATGTCCCAGACATGTCTTACACTAGCCT-TCATTTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACT-GACTATCATCTCGA-GCT
*
67283614 GATGCCATTTCCCAGACATGGTCTTACA
1 GATG-CATGTCCCAGACAT-GTCTTACA
67283642 TTAGCTCACA
Statistics
Matches: 104, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
45 4 0.04
46 71 0.68
47 21 0.20
48 8 0.08
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCGAGCT
Found at i:67288796 original size:29 final size:28
Alignment explanation
Indices: 67288744--67288798 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
67288734 TCATTAATCT
*
67288744 TTATTATAATCCCATGCGTGATAAAACC
1 TTATTATAATCCAATGCGTGATAAAACC
* *
67288772 TTATTATAAATCCAATGGGTTATAAAA
1 TTATTAT-AATCCAATGCGTGATAAAA
67288799 ATGGCACGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.35
Consensus pattern (28 bp):
TTATTATAATCCAATGCGTGATAAAACC
Found at i:67288870 original size:23 final size:23
Alignment explanation
Indices: 67288843--67288891 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
67288833 AAAAAATTAC
*
67288843 AAAGCTTTAGCATGTCATCCACA
1 AAAGCTTTACCATGTCATCCACA
67288866 AAAGCTTTACCATGTCATCCACA
1 AAAGCTTTACCATGTCATCCACA
67288889 AAA
1 AAA
67288892 CAAAACTATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (23 bp):
AAAGCTTTACCATGTCATCCACA
Found at i:67289326 original size:6 final size:6
Alignment explanation
Indices: 67289317--67289376 Score: 120
Period size: 6 Copynumber: 10.0 Consensus size: 6
67289307 AAATCAATAC
67289317 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
67289365 ATGTAT ATGTAT
1 ATGTAT ATGTAT
67289377 GTGCATGCAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:67289417 original size:37 final size:37
Alignment explanation
Indices: 67289376--67289449 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
67289366 TGTATATGTA
67289376 TGTGCATGCATGAAAGAATGTCAAGACCATTATTCAT
1 TGTGCATGCATGAAAGAATGTCAAGACCATTATTCAT
67289413 TGTGCATGCATGAAAGAATGTCAAGACCATTATTCAT
1 TGTGCATGCATGAAAGAATGTCAAGACCATTATTCAT
67289450 ACTTTGGTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (37 bp):
TGTGCATGCATGAAAGAATGTCAAGACCATTATTCAT
Found at i:67290580 original size:22 final size:22
Alignment explanation
Indices: 67290555--67290599 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
67290545 TTTAATAAAA
67290555 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
67290577 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
67290599 A
1 A
67290600 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:67295172 original size:22 final size:22
Alignment explanation
Indices: 67295147--67295191 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
67295137 TTTAATAAAA
67295147 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
67295169 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
67295191 A
1 A
67295192 CATTTATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:67298066 original size:3 final size:3
Alignment explanation
Indices: 67298058--67298114 Score: 60
Period size: 3 Copynumber: 19.0 Consensus size: 3
67298048 TTTTTGCCTT
* * * * * *
67298058 TGC TGC TGC TGC TGC TGC TGG TGT TGT TGC TGC TGC TGG TGT TGT TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
67298106 TGC TGC TGC
1 TGC TGC TGC
67298115 AGTTGCTGCG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.00, C:0.23, G:0.37, T:0.40
Consensus pattern (3 bp):
TGC
Found at i:67298119 original size:18 final size:18
Alignment explanation
Indices: 67298067--67298113 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
67298057 TTGCTGCTGC
67298067 TGCTGCTGCTGGTGTTGT
1 TGCTGCTGCTGGTGTTGT
67298085 TGCTGCTGCTGGTGTTGT
1 TGCTGCTGCTGGTGTTGT
67298103 TGCTGCTGCTG
1 TGCTGCTGCTG
67298114 CAGTTGCTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.00, C:0.19, G:0.38, T:0.43
Consensus pattern (18 bp):
TGCTGCTGCTGGTGTTGT
Found at i:67298806 original size:19 final size:19
Alignment explanation
Indices: 67298760--67298807 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
67298750 GTATATATTT
*
67298760 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGCTAGA
*
67298778 TAAATCTTATTTAGCTAGA
1 TAAATTTTATTTAGCTAGA
*
67298797 TAAGTTTTATT
1 TAAATTTTATT
67298808 AATATTCTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGCTAGA
Found at i:67302141 original size:19 final size:19
Alignment explanation
Indices: 67302095--67302142 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
67302085 GTATATATTT
67302095 TAAA-TTTATTTAAGTAAA
1 TAAATTTTATTTAAGTAAA
* * *
67302113 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAAGTAAA
*
67302132 TAAGTTTTATT
1 TAAATTTTATT
67302143 AATATTCTAG
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 4 0.17
19 20 0.83
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAAGTAAA
Found at i:67305296 original size:28 final size:28
Alignment explanation
Indices: 67305256--67305311 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
67305246 TTGTGCTGAT
67305256 AGTATGTCATAAATGTGCAAGCAATCAA
1 AGTATGTCATAAATGTGCAAGCAATCAA
67305284 AGTATGTCATAAATGTGCAAGCAATCAA
1 AGTATGTCATAAATGTGCAAGCAATCAA
67305312 TCACTGGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.18, T:0.25
Consensus pattern (28 bp):
AGTATGTCATAAATGTGCAAGCAATCAA
Found at i:67307199 original size:28 final size:28
Alignment explanation
Indices: 67307167--67307236 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
67307157 ATAGTAAGTC
67307167 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
67307195 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
67307223 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67307237 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:67310238 original size:18 final size:18
Alignment explanation
Indices: 67310217--67310264 Score: 96
Period size: 18 Copynumber: 2.7 Consensus size: 18
67310207 AAAATGTGAG
67310217 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
67310235 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTC
67310253 AAATGATGTTCA
1 AAATGATGTTCA
67310265 AATTGATGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
AAATGATGTTCACATTTC
Found at i:67310815 original size:71 final size:72
Alignment explanation
Indices: 67310692--67310928 Score: 374
Period size: 71 Copynumber: 3.3 Consensus size: 72
67310682 AAATACTAAA
*
67310692 CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
67310757 GTGTAAT
66 GTGTAAT
* *
67310764 CTAGTTTTACCAATGGTTGTTTATGTTT-GTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
67310828 GTGTAAT
66 GTGTAAT
* *
67310835 CTAGTTTTATTAATAGTTGTTTATGTTTGGTATTTGGATATTG-ATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
67310899 ACT-AAAT
66 -GTGTAAT
67310906 -TAGTTTTATCAATAGTTGTTTAT
1 CTAGTTTTATCAATAGTTGTTTAT
67310929 ATATGATTTT
Statistics
Matches: 153, Mismatches: 10, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
70 22 0.14
71 92 0.60
72 39 0.25
ACGTcount: A:0.24, C:0.06, G:0.15, T:0.55
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTGTAAT
Found at i:67312798 original size:19 final size:19
Alignment explanation
Indices: 67312749--67312805 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 19
67312739 TTACTTAGAA
*
67312749 ATATTTAAA-ATTAATATTAT
1 ATATTAAAATATTAATA--AT
67312769 ATATTAAAATATTAATAAT
1 ATATTAAAATATTAATAAT
67312788 ATATTAAAATATTAATAA
1 ATATTAAAATATTAATAA
67312806 AAAGTTATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
19 20 0.57
20 8 0.23
21 7 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATATTAAAATATTAATAAT
Found at i:67313022 original size:13 final size:13
Alignment explanation
Indices: 67313006--67313031 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67312996 TTTCACAGCG
67313006 CTTTTCAAAAGTA
1 CTTTTCAAAAGTA
67313019 CTTTTCAAAAGTA
1 CTTTTCAAAAGTA
67313032 TTGCCAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (13 bp):
CTTTTCAAAAGTA
Found at i:67314994 original size:21 final size:21
Alignment explanation
Indices: 67314968--67315016 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
67314958 GGGTATACGG
*
67314968 CCGTGTGAAAGAGGCACACGC
1 CCGTGTGAAAGAGCCACACGC
67314989 CCGTGTGAAAGAGCCACACGC
1 CCGTGTGAAAGAGCCACACGC
67315010 CCGTGTG
1 CCGTGTG
67315017 GCCAATTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.31, G:0.33, T:0.12
Consensus pattern (21 bp):
CCGTGTGAAAGAGCCACACGC
Found at i:67317129 original size:28 final size:28
Alignment explanation
Indices: 67317041--67317140 Score: 87
Period size: 28 Copynumber: 3.6 Consensus size: 28
67317031 TCGATGTCTC
* * * * *
67317041 GCACACTATGTACCATACTCGATACCTC
1 GCACACTAAGTGCCATTCTCGATACTTT
* * * *
67317069 GTACACTAAGTGCTATTCTGGAT-GTTT
1 GCACACTAAGTGCCATTCTCGATACTTT
*
67317096 CACACACTAAGTGCCATTCTCGATACTTT
1 -GCACACTAAGTGCCATTCTCGATACTTT
67317125 GCACACTAAGT-CCATT
1 GCACACTAAGTGCCATT
67317141 TATATATATA
Statistics
Matches: 55, Mismatches: 15, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
27 6 0.11
28 46 0.84
29 3 0.05
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCGATACTTT
Found at i:67319194 original size:47 final size:48
Alignment explanation
Indices: 67319120--67319344 Score: 189
Period size: 47 Copynumber: 4.8 Consensus size: 48
67319110 GGGTAAGGCA
* * * * *
67319120 CCGAGGCCATGTCCTAGACACGATCTTACATTGGCTCATATCTC-AAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAG
* * *
67319167 TCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCGAAG
* * ** *
67319215 CCGAT-ACATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAG
* * *
67319261 CCAATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTCGT-T-TC-AATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATATCTCGAA-G
* *
67319307 TCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
67319345 CACACGAATG
Statistics
Matches: 144, Mismatches: 25, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
45 1 0.01
46 59 0.41
47 66 0.46
48 18 0.12
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCGAAG
Found at i:67319257 original size:46 final size:47
Alignment explanation
Indices: 67319174--67319342 Score: 168
Period size: 46 Copynumber: 3.6 Consensus size: 47
67319164 AAGTCGATGC
* *
67319174 CATGTCCCAGACATGGTCTTACACTGAC-TATCATCTCGTA-GCCGATA
1 CATGTCCCAGACATGGTCTTACACTGGCTTA-CGTCTCG-AGGCCGATA
* *
67319221 CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTCGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATA
* * * * * * *
67319267 CATGTCCCAGACAT-GTCTTACACTAGCCCT-CGTTTCAATGTCGATGT
1 CATGTCCCAGACATGGTCTTACACT-GGCTTACGTCTCGAGGCCGAT-A
67319314 CATGTCCCAGACATGGTCTTACACTGGCT
1 CATGTCCCAGACATGGTCTTACACTGGCT
67319343 CACACACGAA
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.01
46 57 0.55
47 35 0.34
48 10 0.10
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACGTCTCGAGGCCGATA
Found at i:67323605 original size:42 final size:42
Alignment explanation
Indices: 67323541--67323629 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
67323531 TATTATAGTC
* *
67323541 AGGCCGTGTAACTCTCGTAATAGCCCCACACGCCTGTGTGCT
1 AGGCCGTGTAACTCTCGAAATAGCCCCACACGCCTATGTGCT
**
67323583 AGGCCGTGTAACTCTCGAAATAGCTTCACACGCCTATGTGCT
1 AGGCCGTGTAACTCTCGAAATAGCCCCACACGCCTATGTGCT
67323625 AGGCC
1 AGGCC
67323630 ATATACTACC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.24
Consensus pattern (42 bp):
AGGCCGTGTAACTCTCGAAATAGCCCCACACGCCTATGTGCT
Found at i:67326143 original size:44 final size:44
Alignment explanation
Indices: 67326091--67326177 Score: 156
Period size: 44 Copynumber: 2.0 Consensus size: 44
67326081 TTACATGTAA
* *
67326091 TCACATATCGATGCCATGGTCTTACTCGTACACATATATCGGAG
1 TCACATATCGATGCCATGGTCTTACTCGCACACATAAATCGGAG
67326135 TCACATATCGATGCCATGGTCTTACTCGCACACATAAATCGGA
1 TCACATATCGATGCCATGGTCTTACTCGCACACATAAATCGGA
67326178 ATCCTATGTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (44 bp):
TCACATATCGATGCCATGGTCTTACTCGCACACATAAATCGGAG
Found at i:67328039 original size:36 final size:36
Alignment explanation
Indices: 67327983--67328087 Score: 115
Period size: 36 Copynumber: 2.9 Consensus size: 36
67327973 AAATCCCACC
* *
67327983 AAAACACACCAGATGCTCATAAGAGCTAGTCCATCT
1 AAAACACACCAAATGCTCATAAGAGCTAATCCATCT
*
67328019 AAAACACACCAAATGGTCATAAGAGCTAATCCAT-T
1 AAAACACACCAAATGCTCATAAGAGCTAATCCATCT
** **
67328054 CGGAACACACC-AATGGCTCCGAAGAGCTAATCCA
1 -AAAACACACCAAAT-GCTCATAAGAGCTAATCCA
67328088 ACCGATATAC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
35 4 0.07
36 55 0.93
ACGTcount: A:0.40, C:0.28, G:0.15, T:0.17
Consensus pattern (36 bp):
AAAACACACCAAATGCTCATAAGAGCTAATCCATCT
Found at i:67337348 original size:29 final size:29
Alignment explanation
Indices: 67337314--67337387 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
67337304 TAATCAACCA
*
67337314 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
67337343 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
67337372 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
67337388 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:67345447 original size:29 final size:29
Alignment explanation
Indices: 67345413--67345486 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
67345403 TAATCAACCA
*
67345413 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
67345442 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
67345471 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
67345487 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:67349853 original size:25 final size:24
Alignment explanation
Indices: 67349790--67349895 Score: 83
Period size: 25 Copynumber: 4.3 Consensus size: 24
67349780 CCACAACTCT
* * *
67349790 TATGAGCTTACCGGTTTCATCTCT
1 TATGAGCTTACCGATTTCAGCTCG
*
67349814 TGA-GAGCTTATCGATTCTCAGCTCG
1 T-ATGAGCTTACCGATT-TCAGCTCG
*
67349839 TATGAGCTTACCGATTTACAACTCG
1 TATGAGCTTACCGATTT-CAGCTCG
*
67349864 TGA-GAGCATACCGA-TTCATAGCTCG
1 T-ATGAGCTTACCGATTTC--AGCTCG
67349889 TATGAGC
1 TATGAGC
67349896 ATACATGTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
23 1 0.02
24 17 0.26
25 47 0.71
26 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (24 bp):
TATGAGCTTACCGATTTCAGCTCG
Found at i:67349880 original size:50 final size:49
Alignment explanation
Indices: 67349790--67349895 Score: 142
Period size: 50 Copynumber: 2.1 Consensus size: 49
67349780 CCACAACTCT
* * * * *
67349790 TATGAGCTTACCGGTTTCATCTCTTGAGAGCTTATCGATTC-TCAGCTCG
1 TATGAGCTTACCGATTTCAACTCGTGAGAGCATACCGATTCAT-AGCTCG
67349839 TATGAGCTTACCGATTTACAACTCGTGAGAGCATACCGATTCATAGCTCG
1 TATGAGCTTACCGATTT-CAACTCGTGAGAGCATACCGATTCATAGCTCG
67349889 TATGAGC
1 TATGAGC
67349896 ATACATGTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
49 16 0.32
50 33 0.66
51 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (49 bp):
TATGAGCTTACCGATTTCAACTCGTGAGAGCATACCGATTCATAGCTCG
Found at i:67350098 original size:30 final size:31
Alignment explanation
Indices: 67350041--67350099 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
67350031 TATACATGAA
67350041 ATACATGGAAATGATATTACATGATATATTG
1 ATACATGGAAATGATATTACATGATATATTG
67350072 ATACAT-GAAATGGATGA-TACAT-ATATAT
1 ATACATGGAAAT-GAT-ATTACATGATATAT
67350100 GAAACTTGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
30 11 0.42
31 14 0.54
32 1 0.04
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (31 bp):
ATACATGGAAATGATATTACATGATATATTG
Found at i:67351607 original size:14 final size:14
Alignment explanation
Indices: 67351588--67351621 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
67351578 TACTGGTGAA
67351588 TACAGATTATAACT
1 TACAGATTATAACT
67351602 TACAGATTATAACT
1 TACAGATTATAACT
*
67351616 TGCAGA
1 TACAGA
67351622 CAGTGAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (14 bp):
TACAGATTATAACT
Found at i:67365325 original size:30 final size:30
Alignment explanation
Indices: 67365270--67365352 Score: 91
Period size: 30 Copynumber: 2.9 Consensus size: 30
67365260 CCAGATATAT
* *
67365270 TGACGAAGTCACCAG---ATATAGATATTG
1 TGACGAAGCCACCAGAACATATATATATTG
* * *
67365297 TGGCTAGGCCACCAGAACATATATATATTG
1 TGACGAAGCCACCAGAACATATATATATTG
*
67365327 TGACGAAGCCACCAGAACAGATATAT
1 TGACGAAGCCACCAGAACATATATAT
67365353 GTGGCGAGCC
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
27 11 0.25
30 33 0.75
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.23
Consensus pattern (30 bp):
TGACGAAGCCACCAGAACATATATATATTG
Found at i:67365351 original size:32 final size:32
Alignment explanation
Indices: 67365282--67365352 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 32
67365272 ACGAAGTCAC
* * * *
67365282 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATATATATTGTGACGAAGCCACCAGAA
67365314 C--ATATATATATTGTGACGAAGCCACCAGAA
1 CAGATATATATATTGTGACGAAGCCACCAGAA
67365344 CAGATATAT
1 CAGATATAT
67365353 GTGGCGAGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 26 0.79
32 7 0.21
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (32 bp):
CAGATATATATATTGTGACGAAGCCACCAGAA
Found at i:67371004 original size:25 final size:24
Alignment explanation
Indices: 67370934--67371005 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
67370924 CCATAGCCCG
* ** *
67370934 TATGAGCTTACCGATTTCAATTCC
1 TATGAGCTTATCGATTTCAGCTCA
*
67370958 TAGGAGCTTATCGATTCTCAGCTCA
1 TATGAGCTTATCGATT-TCAGCTCA
67370983 TATGAGCTTATCGATTTACAGCT
1 TATGAGCTTATCGATTT-CAGCT
67371006 TGTGAGAGCA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 15 0.38
25 25 0.62
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (24 bp):
TATGAGCTTATCGATTTCAGCTCA
Found at i:67371229 original size:30 final size:30
Alignment explanation
Indices: 67371190--67371251 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
67371180 TACATGAAAT
67371190 ACATGGAAAT-GAT-ATTACATGATATATTGAA
1 ACATGGAAATGGATGA-TACATG-TATA-TGAA
67371221 ACAT-GAAATGGATGATACATGTATATGAA
1 ACATGGAAATGGATGATACATGTATATGAA
67371250 AC
1 AC
67371252 TTCCTTAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
29 6 0.21
30 9 0.31
31 13 0.45
32 1 0.03
ACGTcount: A:0.45, C:0.08, G:0.18, T:0.29
Consensus pattern (30 bp):
ACATGGAAATGGATGATACATGTATATGAA
Found at i:67374507 original size:29 final size:29
Alignment explanation
Indices: 67374454--67374547 Score: 102
Period size: 28 Copynumber: 3.3 Consensus size: 29
67374444 ATTGAATGAC
* *
67374454 TATGAATGTGATTGGGGCC-GATGGGCCA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
67374482 TATGAATGTGATTTGGGCCTAATGGGCCG
1 TATGAATGTGATTTGGGCCTAATGGGCCA
* * * *
67374511 TATGTATGAGA-TTGGGCCTAGTGGGCGA
1 TATGAATGTGATTTGGGCCTAATGGGCCA
*
67374539 TATGTATGT
1 TATGAATGT
67374548 ATGCAGACTT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 40 0.71
29 16 0.29
ACGTcount: A:0.21, C:0.12, G:0.36, T:0.31
Consensus pattern (29 bp):
TATGAATGTGATTTGGGCCTAATGGGCCA
Found at i:67379542 original size:12 final size:12
Alignment explanation
Indices: 67379525--67379549 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
67379515 GTCAGCGATG
67379525 ATAATCTACAAA
1 ATAATCTACAAA
67379537 ATAATCTACAAA
1 ATAATCTACAAA
67379549 A
1 A
67379550 ATTGATAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAATCTACAAA
Found at i:67379728 original size:40 final size:42
Alignment explanation
Indices: 67379658--67379755 Score: 94
Period size: 41 Copynumber: 2.4 Consensus size: 42
67379648 GTATAATAAG
* * * * *
67379658 GGGCACGAAAGTGCAA-TCAGGGTTACCGAAG-TACAAACAA
1 GGGCACGAGAGTGTAATTAAGGGTTACCGAAGAAAAAAACAA
* *
67379698 GGGCACGAGAGTGTAATTAAGGG-TATCGAAGAAAAAAACAT
1 GGGCACGAGAGTGTAATTAAGGGTTACCGAAGAAAAAAACAA
* *
67379739 CGGCATGAGAGTGTAAT
1 GGGCACGAGAGTGTAAT
67379756 CATTCAATAA
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
40 21 0.45
41 26 0.55
ACGTcount: A:0.40, C:0.14, G:0.30, T:0.16
Consensus pattern (42 bp):
GGGCACGAGAGTGTAATTAAGGGTTACCGAAGAAAAAAACAA
Found at i:67386392 original size:20 final size:20
Alignment explanation
Indices: 67386367--67386431 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 20
67386357 TACATTATCT
67386367 ACATTACTGGTGGCTTGTCC
1 ACATTACTGGTGGCTTGTCC
* * *
67386387 ACATTACTGGTAGCTTTTCT
1 ACATTACTGGTGGCTTGTCC
* * *
67386407 ACAATACTGGTGGCTAGTTC
1 ACATTACTGGTGGCTTGTCC
67386427 ACATT
1 ACATT
67386432 TCTTACAATT
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (20 bp):
ACATTACTGGTGGCTTGTCC
Found at i:67388163 original size:13 final size:13
Alignment explanation
Indices: 67388142--67388183 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
67388132 AAGGAGGAGT
*
67388142 TTTTACATGGGGA
1 TTTTGCATGGGGA
*
67388155 TTTTGCATGAGGA
1 TTTTGCATGGGGA
*
67388168 TTTTGGATGGGGA
1 TTTTGCATGGGGA
67388181 TTT
1 TTT
67388184 GGGAGAGTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.19, C:0.05, G:0.33, T:0.43
Consensus pattern (13 bp):
TTTTGCATGGGGA
Found at i:67389684 original size:14 final size:14
Alignment explanation
Indices: 67389667--67389697 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
67389657 AAAAACTAGA
*
67389667 AAATAAAGTAAAAT
1 AAATAAAATAAAAT
67389681 AAATAAAATAAAAT
1 AAATAAAATAAAAT
67389695 AAA
1 AAA
67389698 GTTCTAATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:67391599 original size:5 final size:5
Alignment explanation
Indices: 67391585--67391617 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
67391575 GAAAACAAAG
67391585 TAAAA T-AAA TAAAA TAAAA TAAAA TAAAA TAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAA
67391618 TTTCTAATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:67393170 original size:22 final size:22
Alignment explanation
Indices: 67393143--67393185 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
67393133 GAAAATAATA
*
67393143 AAAATTAATC-AAAATTTATTAT
1 AAAATT-ATCTAAAATTCATTAT
67393165 AAAATTATCTAAAATTCATTA
1 AAAATTATCTAAAATTCATTA
67393186 GGTTAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAATTATCTAAAATTCATTAT
Found at i:67403274 original size:20 final size:20
Alignment explanation
Indices: 67403249--67403287 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
67403239 TAATTTAAAA
* *
67403249 AATGAGCTAGAATTGAGCTC
1 AATGAGCTACAAATGAGCTC
67403269 AATGAGCTACAAATGAGCT
1 AATGAGCTACAAATGAGCT
67403288 AAATTAACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (20 bp):
AATGAGCTACAAATGAGCTC
Found at i:67403276 original size:9 final size:11
Alignment explanation
Indices: 67403248--67403288 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
67403238 CTAATTTAAA
*
67403248 AAATGAGCTAG
1 AAATGAGCTAC
*
67403259 AATTGAGCT-C
1 AAATGAGCTAC
67403269 -AATGAGCTAC
1 AAATGAGCTAC
67403279 AAATGAGCTA
1 AAATGAGCTA
67403289 AATTAACTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 7 0.28
10 1 0.04
11 17 0.68
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (11 bp):
AAATGAGCTAC
Found at i:67405305 original size:38 final size:38
Alignment explanation
Indices: 67405125--67405296 Score: 281
Period size: 38 Copynumber: 4.5 Consensus size: 38
67405115 TACATCGGTG
* *
67405125 CAAAGCCTGCTAGGGACATAGCCCGAATATCATCGGCA
1 CAAAGCCTGCTAGGCACATAGCCCGAATATCACCGGCA
* *
67405163 CAAAGCCTACTAGGCACATAGCCTGAATATCACCGGCA
1 CAAAGCCTGCTAGGCACATAGCCCGAATATCACCGGCA
*
67405201 CAAAGCCTGCTAGGCACATAGCCCGAATATCACCGGAA
1 CAAAGCCTGCTAGGCACATAGCCCGAATATCACCGGCA
* *
67405239 CAAAGCCTGCTAAGCACATAACCCGAATATCACCGGCA
1 CAAAGCCTGCTAGGCACATAGCCCGAATATCACCGGCA
67405277 CAAAGCCTGCTAGGCACATA
1 CAAAGCCTGCTAGGCACATA
67405297 CCTTGAATAG
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 123 1.00
ACGTcount: A:0.34, C:0.31, G:0.20, T:0.15
Consensus pattern (38 bp):
CAAAGCCTGCTAGGCACATAGCCCGAATATCACCGGCA
Found at i:67408518 original size:19 final size:20
Alignment explanation
Indices: 67408486--67408531 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
67408476 CGAAAAATAA
67408486 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
67408506 TTTCTGG-AAATGATTTACT
1 TTTCTGGAAAATGATTTACT
67408525 TTTCTGG
1 TTTCTGG
67408532 TGTTTGGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:67408886 original size:18 final size:19
Alignment explanation
Indices: 67408846--67408886 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
67408836 TGTTATAAAA
67408846 AAATAAAAAACAAGGATTG
1 AAATAAAAAACAAGGATTG
67408865 AAATAAAAAACAAGGATT-
1 AAATAAAAAACAAGGATTG
67408883 AAAT
1 AAAT
67408887 GCCATCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.66, C:0.05, G:0.12, T:0.17
Consensus pattern (19 bp):
AAATAAAAAACAAGGATTG
Found at i:67414281 original size:19 final size:19
Alignment explanation
Indices: 67414257--67414294 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
67414247 GTGAAAGGGA
67414257 ATGGTATCGATTAGTCCTT
1 ATGGTATCGATTAGTCCTT
*
67414276 ATGGTATTGATTAGTCCTT
1 ATGGTATCGATTAGTCCTT
67414295 CAGGATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.45
Consensus pattern (19 bp):
ATGGTATCGATTAGTCCTT
Found at i:67414635 original size:95 final size:95
Alignment explanation
Indices: 67414461--67414662 Score: 275
Period size: 95 Copynumber: 2.1 Consensus size: 95
67414451 GAGGTTTAAG
* * * **
67414461 GTGTAAGACCAT-TGCTTGACTATGGTAGCATATGGAGTTTGTCGGGACAATAAATATGTTGTAG
1 GTGTAAGACCATAAGCTTGACTATGGTAGCATATGGAGTCTGTCGGGACAATAAACATGGGGTAG
* *
67414525 TCTGCCATGATGTTAAACATGGGGTTAGATT
66 TCTACCATGAAGTTAAACATGGGG-TAGATT
* *
67414556 GTGTAAGACCATAAG-TTGGCTTTGGTAGCATATGGAGTCTGTCGGGACAATAAACATGGGGTAG
1 GTGTAAGACCATAAGCTTGACTATGGTAGCATATGGAGTCTGTCGGGACAATAAACATGGGGTAG
67414620 TCTACCAAT-AAGTTAAACATGGGGTAGATT
66 TCTACC-ATGAAGTTAAACATGGGGTAGATT
*
67414650 ATGTAAGACCATA
1 GTGTAAGACCATA
67414663 GCTCAGCTAT
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
94 18 0.19
95 74 0.78
96 3 0.03
ACGTcount: A:0.30, C:0.12, G:0.27, T:0.30
Consensus pattern (95 bp):
GTGTAAGACCATAAGCTTGACTATGGTAGCATATGGAGTCTGTCGGGACAATAAACATGGGGTAG
TCTACCATGAAGTTAAACATGGGGTAGATT
Found at i:67415154 original size:21 final size:21
Alignment explanation
Indices: 67415128--67415167 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
67415118 CTCAAGGCTA
*
67415128 ATTGATCAATAAATTCCACTG
1 ATTGATCAATAAAGTCCACTG
67415149 ATTGATCAATAAAGTCCAC
1 ATTGATCAATAAAGTCCAC
67415168 CAAAGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (21 bp):
ATTGATCAATAAAGTCCACTG
Found at i:67423654 original size:27 final size:27
Alignment explanation
Indices: 67423623--67423790 Score: 212
Period size: 27 Copynumber: 6.2 Consensus size: 27
67423613 TAGTTTACCA
*
67423623 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
67423650 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
67423677 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
67423704 AATTA-TCGAAATACCCTTGTAGGATAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
67423731 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
67423758 AATTACAGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
67423785 AATTAC
1 AATTAC
67423791 CATTTTGCCC
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 121 0.99
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:67424064 original size:27 final size:26
Alignment explanation
Indices: 67423992--67424108 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 26
67423982 ATGGAGGAAG
*
67423992 TGTTCTGGTGGCTATGCCATAGATATC
1 TGTTCTGGTGGCTATGCCACA-ATATC
67424019 TGTTTCTGGTGGCTATGCCACAAATATC
1 TG-TTCTGGTGGCTATGCCAC-AATATC
*
67424047 TGTTCTGGTGGCTCTGCCACAATATC
1 TGTTCTGGTGGCTATGCCACAATATC
* * *
67424073 TGTATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGGCTATGCCACAATATC
*
67424100 TGTGCTGGT
1 TGTTCTGGT
67424109 AGCCATGTTG
Statistics
Matches: 82, Mismatches: 5, Indels: 7
0.87 0.05 0.07
Matches are distributed among these distances:
26 14 0.17
27 43 0.52
28 24 0.29
29 1 0.01
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (26 bp):
TGTTCTGGTGGCTATGCCACAATATC
Found at i:67426312 original size:42 final size:43
Alignment explanation
Indices: 67426203--67426359 Score: 122
Period size: 43 Copynumber: 3.7 Consensus size: 43
67426193 AGCTCATATA
* *
67426203 ATGCCAATGTCCCT-GACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGT-CCTAGACATGGTCTTACATGAAATCAAATATCG
* * * * *
67426246 ATGCCACTGTCCCAAACAGGGTCTTACATGAAATTAAATAT-G
1 ATGCCAATGTCCTAGACATGGTCTTACATGAAATCAAATATCG
** * * *
67426288 ATGGTAATGTCCTAGACATGGTCTTACACGTAAATCATAA-GTCA
1 ATGCCAATGTCCTAGACATGGTCTTACATG-AAATCA-AATATCG
* * **
67426332 ATGCCAACGTCCCAGATGTGGTCTTACA
1 ATGCCAATGTCCTAGACATGGTCTTACA
67426360 CAAAAACACA
Statistics
Matches: 87, Mismatches: 23, Indels: 7
0.74 0.20 0.06
Matches are distributed among these distances:
42 26 0.30
43 37 0.43
44 24 0.28
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCTAGACATGGTCTTACATGAAATCAAATATCG
Found at i:67428654 original size:12 final size:12
Alignment explanation
Indices: 67428637--67428662 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67428627 AAAGTTATAT
67428637 GGCCTAGCACAC
1 GGCCTAGCACAC
67428649 GGCCTAGCACAC
1 GGCCTAGCACAC
67428661 GG
1 GG
67428663 GCGTGTGGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.38, G:0.31, T:0.08
Consensus pattern (12 bp):
GGCCTAGCACAC
Found at i:67431570 original size:46 final size:46
Alignment explanation
Indices: 67431503--67431669 Score: 201
Period size: 46 Copynumber: 3.6 Consensus size: 46
67431493 TATTTGGGCA
67431503 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG
* ** * * * *
67431549 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAT-TTATGGATGCGA-GCG
* * *
67431596 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG
* *
67431642 CCCGAGCTCGTTGAGTTGAGTCCGAGTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT
67431670 TGCTTATGGG
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
46 64 0.64
47 36 0.36
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG
Found at i:67431658 original size:93 final size:93
Alignment explanation
Indices: 67431499--67431669 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67431489 GGGATATTTG
* * *
67431499 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67431564 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
67431592 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
67431657 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
67431670 TGCTTATGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:67438452 original size:29 final size:28
Alignment explanation
Indices: 67438365--67438588 Score: 145
Period size: 29 Copynumber: 8.0 Consensus size: 28
67438355 TATAAGTGAT
* * *
67438365 CCTTTGTGGCTATCT-T-TGAATGGAAA
1 CCTTTGTGGCTATCTCTGTTAAAGGAAG
* * *
67438391 CATTTGTAGCTATCTCTG--AAAGGTAG
1 CCTTTGTGGCTATCTCTGTTAAAGGAAG
* *
67438417 CCGTTGTGGCAATCTCTGTTATAAGGAAG
1 CCTTTGTGGCTATCTCTGTTA-AAGGAAG
* *
67438446 CCTTTGTGG-TGATCTCTATTAAGAGGATG
1 CCTTTGTGGCT-ATCTCTGTTAA-AGGAAG
* * *
67438475 CCTTTATGGTTATCT-TAGTTAAAAGAATG
1 CCTTTGTGGCTATCTCT-GTTAAAGGAA-G
* * *
67438504 TCTTTGTGGCGATCTCTGTTAAAGGGATG
1 CCTTTGTGGCTATCTCTGTTAAA-GGAAG
* * *
67438533 CCTTTGTCGCTATCTCAGTTAAATGAATG
1 CCTTTGTGGCTATCTCTGTTAAAGGAA-G
* * *
67438562 CTTTTGTAGCTATCTCAGTTAAAGGAA
1 CCTTTGTGGCTATCTCTGTTAAAGGAA
67438589 TGTCTTGCGT
Statistics
Matches: 152, Mismatches: 33, Indels: 23
0.73 0.16 0.11
Matches are distributed among these distances:
26 32 0.21
27 1 0.01
28 8 0.05
29 107 0.70
30 4 0.03
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (28 bp):
CCTTTGTGGCTATCTCTGTTAAAGGAAG
Found at i:67439080 original size:4 final size:4
Alignment explanation
Indices: 67439071--67439095 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
67439061 AAATGGTTCT
67439071 AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG A
67439096 TGGTAACCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:67442648 original size:46 final size:46
Alignment explanation
Indices: 67442596--67442770 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
67442586 GATGGTTGAG
* *
67442596 CATCCGAACTTGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * *
67442642 TC-TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGG
1 -CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
*
67442689 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
** * *
67442735 CGCCCGAGCCCGTTGAGTTGAGTCCGAGTTCACTTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67442771 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 20, Indels: 13
0.76 0.15 0.10
Matches are distributed among these distances:
45 1 0.01
46 65 0.64
47 35 0.34
48 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:67442754 original size:93 final size:93
Alignment explanation
Indices: 67442595--67442765 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
67442585 GGATGGTTGA
* * * *
67442595 GCATCCGAACTTGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATCTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCCCCGAACCCGTTGAGT
67442660 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
67442688 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAA-CGCCCGAGCCCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATC-CCCGAACCCGTTGAG
67442752 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
67442766 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATCCCCGAACCCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:67452414 original size:48 final size:48
Alignment explanation
Indices: 67452343--67452626 Score: 478
Period size: 48 Copynumber: 5.9 Consensus size: 48
67452333 CAAGAAAAAT
* * *
67452343 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAACATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
67452391 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
67452439 ATATATATATGTGGTGAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
67452487 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
67452535 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
67452583 ATATGTATATTTGGTAAAGCAGAATGGCTAATGTGAAATATGTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
67452627 GTGGATGTGT
Statistics
Matches: 222, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 222 1.00
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:67452823 original size:37 final size:37
Alignment explanation
Indices: 67452773--67452875 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
67452763 GGAAATATAT
*
67452773 TCCGGGTAAGACCCGATAACTGCGTGTGGAGATCATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATCATG
* **
67452810 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATCATG
67452847 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATAACTACGTGTGG
67452876 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATCATG
Found at i:67460321 original size:17 final size:17
Alignment explanation
Indices: 67460299--67460375 Score: 57
Period size: 17 Copynumber: 4.2 Consensus size: 17
67460289 TATATGTCAT
67460299 ACATAATAAATTTATCA
1 ACATAATAAATTTATCA
*
67460316 ACATAATTAATTTAT-A
1 ACATAATAAATTTATCA
* *
67460332 AGTCATACATACCAATATGTCA
1 A--CATA-ATA--AATTTATCA
*
67460354 TATATAATAAATTTATCA
1 -ACATAATAAATTTATCA
67460372 ACAT
1 ACAT
67460376 TATTAATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 14
0.67 0.12 0.21
Matches are distributed among these distances:
16 2 0.04
17 17 0.38
18 11 0.24
19 2 0.04
20 3 0.07
21 8 0.18
22 1 0.02
23 1 0.02
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.36
Consensus pattern (17 bp):
ACATAATAAATTTATCA
Found at i:67460368 original size:56 final size:56
Alignment explanation
Indices: 67460290--67460405 Score: 205
Period size: 56 Copynumber: 2.1 Consensus size: 56
67460280 ACTATCACAT
*
67460290 ATATGTCATACATAATAAATTTATCAACATAATTAATTTATAAGTCATACATACCA
1 ATATGTCATACATAATAAATTTATCAACATAATTAATTCATAAGTCATACATACCA
* *
67460346 ATATGTCATATATAATAAATTTATCAACATTATTAATTCATAAGTCATACATACCA
1 ATATGTCATACATAATAAATTTATCAACATAATTAATTCATAAGTCATACATACCA
67460402 ATAT
1 ATAT
67460406 TCGACTAATT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (56 bp):
ATATGTCATACATAATAAATTTATCAACATAATTAATTCATAAGTCATACATACCA
Found at i:67462801 original size:78 final size:78
Alignment explanation
Indices: 67462672--67462829 Score: 316
Period size: 78 Copynumber: 2.0 Consensus size: 78
67462662 AAAGTCCAAA
67462672 GGCGATCACCGTGGCCACTCTGAATCCCCTCCGGCCCAAGTCCCCACATCAAGACTCACCTGCAA
1 GGCGATCACCGTGGCCACTCTGAATCCCCTCCGGCCCAAGTCCCCACATCAAGACTCACCTGCAA
67462737 GGTTAAGGAAAGG
66 GGTTAAGGAAAGG
67462750 GGCGATCACCGTGGCCACTCTGAATCCCCTCCGGCCCAAGTCCCCACATCAAGACTCACCTGCAA
1 GGCGATCACCGTGGCCACTCTGAATCCCCTCCGGCCCAAGTCCCCACATCAAGACTCACCTGCAA
67462815 GGTTAAGGAAAGG
66 GGTTAAGGAAAGG
67462828 GG
1 GG
67462830 GGTGAGTTTG
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.25, C:0.35, G:0.24, T:0.15
Consensus pattern (78 bp):
GGCGATCACCGTGGCCACTCTGAATCCCCTCCGGCCCAAGTCCCCACATCAAGACTCACCTGCAA
GGTTAAGGAAAGG
Found at i:67463237 original size:24 final size:24
Alignment explanation
Indices: 67463173--67463318 Score: 161
Period size: 25 Copynumber: 6.0 Consensus size: 24
67463163 GCTTTATCAT
*
67463173 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
67463198 ATAACTGGGG-AAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
67463221 ATAAATGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
67463245 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* * *
67463270 GTAATTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
* *
67463295 ATAATTAGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
67463319 CACTTTCTCC
Statistics
Matches: 107, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
23 15 0.14
24 40 0.37
25 52 0.49
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:67463290 original size:49 final size:48
Alignment explanation
Indices: 67463187--67463318 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 48
67463177 CTGGAGGCCT
*
67463187 AGCCTCTTTTAATAACTGGGG-AAAAGCCCTTTTAATAAATGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAAATGGGGCATA
** *
67463235 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTATCGTAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTT-TAATAAATGGGGCATA
* * *
67463284 AGCCCTTTATCATAATTAGGGCATAAGCCCTTTTA
1 AGCCCTTT-TAATAACTGGGGCATAAGCCCTTTTA
67463319 CACTTTCTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
47 16 0.22
48 14 0.19
49 22 0.30
50 21 0.29
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAAATGGGGCATA
Found at i:67463395 original size:20 final size:20
Alignment explanation
Indices: 67463367--67463433 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
67463357 TTATGAATAC
67463367 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67463387 ATTATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67463407 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
67463427 ACCATGT
1 ATCATGT
67463434 TTATCGAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:67465503 original size:13 final size:13
Alignment explanation
Indices: 67465485--67465510 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
67465475 ATATTATAAT
67465485 TATTTTATGTTAA
1 TATTTTATGTTAA
67465498 TATTTTATGTTAA
1 TATTTTATGTTAA
67465511 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:67466932 original size:40 final size:40
Alignment explanation
Indices: 67466884--67467129 Score: 388
Period size: 40 Copynumber: 6.2 Consensus size: 40
67466874 GGACTAAGAT
67466884 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
67466924 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
*
67466964 CCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
67467004 CCGAAGGCATCTGTGCTAGTGACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
67467044 CCGAAGGCATCTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* * *
67467084 CCGAAGGCATTTGTGCGAGTTG-CTATATTC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
*
67467123 TCGAAGG
1 CCGAAGG
67467130 TACTTGGGTT
Statistics
Matches: 195, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 14 0.07
40 180 0.92
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:67470121 original size:30 final size:30
Alignment explanation
Indices: 67470087--67470143 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
67470077 TTTTTGAGCA
* * *
67470087 TAGGGGTAAAATGGTCATTTTGCCAAAGTC
1 TAGGGGCAAAATGATCATTTTACCAAAGTC
67470117 TAGGGGCAAAATGATCATTTTACCAAA
1 TAGGGGCAAAATGATCATTTTACCAAA
67470144 AATGTGAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGATCATTTTACCAAAGTC
Done.