Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 199 of 345
Found at i:67471455 original size:55 final size:55
Alignment explanation
Indices: 67471372--67471493 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 55
67471362 GCACTTAAAA
* * ** ** *
67471372 TTTT-AAGTCATTGTTGTACATGGGCAGGCCACACGGGTGTGTGCCATGGTCGTG
1 TTTTAAAGTCAGTATTGTACATGGGCAGGCCACACAAGCATGTGCCATGGCCGTG
*
67471426 TTTTAAAGTCAGTATTGTACATGGGCAGGCCACATAAGCATGTGCCATGGCCGTG
1 TTTTAAAGTCAGTATTGTACATGGGCAGGCCACACAAGCATGTGCCATGGCCGTG
67471481 TTTTAAAGTCAGT
1 TTTTAAAGTCAGT
67471494 GTTGCACACG
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 4 0.07
55 55 0.93
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (55 bp):
TTTTAAAGTCAGTATTGTACATGGGCAGGCCACACAAGCATGTGCCATGGCCGTG
Found at i:67474260 original size:23 final size:24
Alignment explanation
Indices: 67474230--67474277 Score: 89
Period size: 23 Copynumber: 2.0 Consensus size: 24
67474220 TGGAAGAAGG
67474230 CTTCCTTGGCCTCT-CTCCTCGAC
1 CTTCCTTGGCCTCTCCTCCTCGAC
67474253 CTTCCTTGGCCTCTCCTCCTCGAC
1 CTTCCTTGGCCTCTCCTCCTCGAC
67474277 C
1 C
67474278 CTTAGATACG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.04, C:0.50, G:0.12, T:0.33
Consensus pattern (24 bp):
CTTCCTTGGCCTCTCCTCCTCGAC
Found at i:67477854 original size:53 final size:53
Alignment explanation
Indices: 67477791--67477897 Score: 187
Period size: 53 Copynumber: 2.0 Consensus size: 53
67477781 ATTAAGAGAA
* *
67477791 AACTATTGAGAGTGAGAGAGGAATGTTGAGTGATGAAGGATGATGGAAAAGTG
1 AACTATTGAGACTGAGAGAGGAATGTTGAGTGATGAAGGATAATGGAAAAGTG
*
67477844 AACTATTGAGACTGAGAGAGGAATGTTGAGTGATGAGGGATAATGGAAAAGTG
1 AACTATTGAGACTGAGAGAGGAATGTTGAGTGATGAAGGATAATGGAAAAGTG
67477897 A
1 A
67477898 GGAATGGCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.38, C:0.03, G:0.36, T:0.22
Consensus pattern (53 bp):
AACTATTGAGACTGAGAGAGGAATGTTGAGTGATGAAGGATAATGGAAAAGTG
Found at i:67480814 original size:6 final size:6
Alignment explanation
Indices: 67480793--67480850 Score: 82
Period size: 6 Copynumber: 9.7 Consensus size: 6
67480783 ATTAAATAAA
* *
67480793 TAAAAC TAACAT TAAAAT TAAAAT TAAAGAT TAAAAT TAAAAT T-AAAT
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAA-AT TAAAAT TAAAAT TAAAAT
67480841 TAAAAT TAAA
1 TAAAAT TAAA
67480851 GACAAATAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
5 5 0.11
6 36 0.77
7 6 0.13
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (6 bp):
TAAAAT
Found at i:67480827 original size:19 final size:17
Alignment explanation
Indices: 67480793--67480850 Score: 80
Period size: 19 Copynumber: 3.2 Consensus size: 17
67480783 ATTAAATAAA
*
67480793 TAAAACTAACATTAAAAT
1 TAAAATTAA-ATTAAAAT
67480811 TAAAATTAAAGATTAAAAT
1 TAAAATT-AA-ATTAAAAT
67480830 TAAAATTAAATTAAAAT
1 TAAAATTAAATTAAAAT
67480847 TAAA
1 TAAA
67480851 GACAAATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
17 12 0.32
18 8 0.22
19 17 0.46
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (17 bp):
TAAAATTAAATTAAAAT
Found at i:67490488 original size:15 final size:17
Alignment explanation
Indices: 67490468--67490500 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
67490458 GGAGTTTTGG
67490468 GTTTTC-TTATG-TTTT
1 GTTTTCTTTATGCTTTT
67490483 GTTTTCTTTATGCTTTT
1 GTTTTCTTTATGCTTTT
67490500 G
1 G
67490501 AGATGTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 5 0.31
17 5 0.31
ACGTcount: A:0.06, C:0.09, G:0.15, T:0.70
Consensus pattern (17 bp):
GTTTTCTTTATGCTTTT
Found at i:67492626 original size:43 final size:43
Alignment explanation
Indices: 67492537--67492653 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
67492527 GATTATTTGA
*
67492537 AAGACCATGTCTGGGACATTGGCATC-ATATTGCGATTACGTGT
1 AAGACCATGTCTGGGACATTGGCATCGATATT-CGATTACGTAT
* * * *
67492580 AAGATCATGTTTGGGACATTGGCATCGTTATAT-GATTTCGTAT
1 AAGACCATGTCTGGGACATTGGCATCGATAT-TCGATTACGTAT
* * *
67492623 AAGACCATATCTAGGACATTGGAATCGATAT
1 AAGACCATGTCTGGGACATTGGCATCGATAT
67492654 GTTATAACAT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
43 57 0.93
44 3 0.05
45 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATCGATATTCGATTACGTAT
Found at i:67494812 original size:37 final size:37
Alignment explanation
Indices: 67494749--67494893 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
67494739 GCTCAGATGG
* * * *
67494749 AATCTCCACACGAAGTTATCGTGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
67494786 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
67494823 AATCTCCACACGTAGTCATCGGGTCTTACCCGAACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
67494860 AATCTCCACACGTAATCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
67494894 ATATATTTCC
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:67495093 original size:48 final size:48
Alignment explanation
Indices: 67495035--67495419 Score: 653
Period size: 48 Copynumber: 8.0 Consensus size: 48
67495025 TATACACACG
* * * *
67495035 TCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* *
67495083 TCTCATACATATTTCACACTAGGCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* *
67495131 TCTCATATATATTTCACATTAGCCATTCGGCTTTATCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
67495179 TCACATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* *
67495227 TCTCATGCATATTTCATATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
67495275 TCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
67495323 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
67495371 TCTCATACATATTTCACATTAGCCATGCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
67495419 T
1 T
67495420 ATTTATCTTG
Statistics
Matches: 318, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 318 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (48 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
Found at i:67499069 original size:40 final size:40
Alignment explanation
Indices: 67499025--67499380 Score: 505
Period size: 40 Copynumber: 8.8 Consensus size: 40
67499015 GAATACACAT
* * * *
67499025 CACCAGCATGATTGCTCTTTGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
67499065 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
* * * * *
67499105 CATCAGCACGAGTGCTCTTCGGAACTTAGCCCAGCTATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCC-G-GATATAA
* *
67499147 CACTAGCACGAATGCTCTTTGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
67499187 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGG--ATATAA
*
67499229 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
67499269 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGG--ATATAA
* *
67499311 CACTAGCACGAATGCTCTTCGGGACTTAACCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
*
67499351 CACCAGCACGAATGCTCTTCAGGACTTAGC
1 CACCAGCACGAATGCTCTTCGGGACTTAGC
67499381 TCGACTATAT
Statistics
Matches: 281, Mismatches: 29, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
40 172 0.61
41 2 0.01
42 107 0.38
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
Found at i:67499158 original size:82 final size:82
Alignment explanation
Indices: 67499025--67499393 Score: 589
Period size: 82 Copynumber: 4.5 Consensus size: 82
67499015 GAATACACAT
* * * * * *
67499025 CACCAGCATGATTGCTCTTTGGGACCTAGCCCGG--ATATAACACCAGCACGAATGCTCTTCGGG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATATCACTAGCACGAATGCTCTTCGGG
67499088 ACTTAGCCCGGATATAA
66 ACTTAGCCCGGATATAA
* * * * *
67499105 CATCAGCACGAGTGCTCTTCGGAACTTAGCCCAGCTATATATCACTAGCACGAATGCTCTTTGGG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATATCACTAGCACGAATGCTCTTCGGG
67499170 ACTTAGCCCGGATATAA
66 ACTTAGCCCGGATATAA
67499187 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATATCACTAGCACGAATGCTCTTCGGG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATATCACTAGCACGAATGCTCTTCGGG
67499252 ACTTAGCCCGGATATAA
66 ACTTAGCCCGGATATAA
67499269 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATATCACTAGCACGAATGCTCTTCGGG
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATATCACTAGCACGAATGCTCTTCGGG
*
67499334 ACTTAACCCGGATATAA
66 ACTTAGCCCGGATATAA
* * *
67499351 CACCAGCACGAATGCTCTTCAGGACTTAGCTCGACTATATATC
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATATC
67499394 TCTCAATTCT
Statistics
Matches: 268, Mismatches: 19, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
80 27 0.10
82 241 0.90
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (82 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGCTATATATCACTAGCACGAATGCTCTTCGGG
ACTTAGCCCGGATATAA
Found at i:67500723 original size:37 final size:37
Alignment explanation
Indices: 67500664--67500809 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
67500654 AGCTCAGATG
* *
67500664 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
67500701 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
67500738 TAATCTCCACACATAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
67500775 TAATCTCCACACGTAATCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
67500810 ATATATTTCC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:67501009 original size:48 final size:48
Alignment explanation
Indices: 67500951--67501287 Score: 557
Period size: 48 Copynumber: 7.0 Consensus size: 48
67500941 TATACACACG
* * * *
67500951 TCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACGTA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* * *
67500999 TCTCATACATATTTCACACTAGGCATTCGGCTTTAGCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* * *
67501047 TCTCATATATATTTCACATTAGCCATTCGGCTTTATCAAATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
67501095 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
*
67501143 TCTCATACATATTTCAGATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
67501191 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
* *
67501239 TCTCATACATATTTCACATTAACCATTCGGCTATACCACATATACATA
1 TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
67501287 T
1 T
67501288 ATTTATCTTG
Statistics
Matches: 272, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 272 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.35
Consensus pattern (48 bp):
TCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA
Found at i:67508343 original size:12 final size:12
Alignment explanation
Indices: 67508326--67508352 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
67508316 ATTCCGAAGT
67508326 ATATATATATAC
1 ATATATATATAC
67508338 ATATATATATAC
1 ATATATATATAC
67508350 ATA
1 ATA
67508353 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:67508883 original size:27 final size:28
Alignment explanation
Indices: 67508799--67508896 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
67508789 CATGAGATTG
* * * *
67508799 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
67508828 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
67508856 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67508883 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
67508897 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:67508907 original size:27 final size:27
Alignment explanation
Indices: 67508827--67508909 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
67508817 TAAATTGTAC
* *
67508827 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
67508855 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
67508882 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
67508909 A
1 A
67508910 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:67517160 original size:27 final size:28
Alignment explanation
Indices: 67517076--67517173 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
67517066 CATGAGATTG
* * * *
67517076 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
67517105 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
67517133 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
67517160 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
67517174 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:67517184 original size:27 final size:27
Alignment explanation
Indices: 67517104--67517186 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
67517094 TAAATTGTAC
* *
67517104 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
67517132 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
67517159 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
67517186 A
1 A
67517187 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:67525256 original size:39 final size:40
Alignment explanation
Indices: 67525079--67525256 Score: 254
Period size: 40 Copynumber: 4.5 Consensus size: 40
67525069 CGGATGATAA
* *
67525079 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
67525119 CTGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67525159 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
67525199 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
67525239 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67525257 TACTTGGTTT
Statistics
Matches: 127, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 109 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67533380 original size:40 final size:40
Alignment explanation
Indices: 67533323--67533540 Score: 318
Period size: 40 Copynumber: 5.5 Consensus size: 40
67533313 TGGATGATAA
* *
67533323 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
67533363 TCGGGCTAAG-CCACGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCC-CGAAGGCATTTGTGCGAGTTACTATAT
* *
67533403 CCGAGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
67533443 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
67533483 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
67533523 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
67533541 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
39 19 0.12
40 142 0.87
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:67535436 original size:43 final size:43
Alignment explanation
Indices: 67535385--67535555 Score: 161
Period size: 43 Copynumber: 4.0 Consensus size: 43
67535375 CATAGGATTT
67535385 TCGATATGTGTATT-CATGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTG-ATTACATGTAAGACCACGTCTGGGACATTGGCA
* * * * * *
67535428 TTGATATGTGATTCCGTGTAAGACCATGTCTGGGACATCGGTA
1 TCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
* ** * *
67535471 TCG-TATTTGATT-TGTGTAAGACC-CTATCTGGGACAGTGGCA
1 TCGATATGTGATTACATGTAAGACCAC-GTCTGGGACATTGGCA
* * * *
67535512 TCGAGATATGATTACATGTAAGACCATGTCTGGGACGTTGGCA
1 TCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
67535555 T
1 T
67535556 TGTACGTTAT
Statistics
Matches: 102, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
41 25 0.25
42 18 0.18
43 59 0.58
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TCGATATGTGATTACATGTAAGACCACGTCTGGGACATTGGCA
Found at i:67538519 original size:43 final size:42
Alignment explanation
Indices: 67538451--67538612 Score: 170
Period size: 43 Copynumber: 3.9 Consensus size: 42
67538441 TAACGAGGTG
*
67538451 TGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATAT-
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATATA
67538492 TGCAATTACGTGTAAGACCATGTCTGGGAC--TGGCATCATTATA
1 TG--ATTACGTGTAAGACCATGTCTGGGACATTGGCATCA-TATA
* * * *
67538535 TGATTTCATGTAAGACCATGTCTGAGACATTGGCATCGATATG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATC-ATATA
* * * * *
67538578 TGATAACATGTAAGGCCATATCTGGGATA-TGGCAT
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCAT
67538613 TGTATGAGCT
Statistics
Matches: 103, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
41 33 0.32
42 9 0.09
43 60 0.58
44 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATATA
Found at i:67543755 original size:45 final size:45
Alignment explanation
Indices: 67543691--67544183 Score: 733
Period size: 45 Copynumber: 11.0 Consensus size: 45
67543681 GGAAAGAACT
*
67543691 GGTGAAATGTTATTCGGGCCTTTGTGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
67543736 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * *
67543781 AGTGAAATATTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
67543826 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
*
67543871 GGTGAAATGTTATTCGGGCTTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * * *
67543916 AGTGAAATGTTATTCTGGCCTTTGAGCCTAGTAGGCTATAATGCT
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
*
67543961 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGTC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* * *
67544006 GGTGAGATATTATTCGGGCCTTTGAGCCTAACAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
* *
67544051 GGTGAGATATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
** * ** *
67544096 AATGAGATACTATTCGGG-CTTTCGAGCCTAACAGGCTATAATGCC
1 GGTGAAATGTTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCC
* * *
67544141 GGTGAAATGATA-TCGGGCC-TCGAGCCTAGCAGGCGA-AATGCC
1 GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
67544183 G
1 G
67544184 ATGATTTGAG
Statistics
Matches: 411, Mismatches: 35, Indels: 7
0.91 0.08 0.02
Matches are distributed among these distances:
42 7 0.02
43 13 0.03
44 10 0.02
45 381 0.93
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (45 bp):
GGTGAAATGTTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCC
Found at i:67547039 original size:27 final size:27
Alignment explanation
Indices: 67546974--67547040 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 27
67546964 TATAGGGCCA
*
67546974 TAATGCCCC-GT-AGGTAAAATGACTG
1 TAATGCCCCTGTAAGGTAAAATAACTG
* * * *
67546999 -AATGCCCTTATAAGGTATAATAATTG
1 TAATGCCCCTGTAAGGTAAAATAACTG
67547025 TAATGCCCCTGTAAGG
1 TAATGCCCCTGTAAGG
67547041 CGAAATGATC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
24 7 0.22
25 1 0.03
26 11 0.34
27 13 0.41
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (27 bp):
TAATGCCCCTGTAAGGTAAAATAACTG
Found at i:67551107 original size:38 final size:38
Alignment explanation
Indices: 67551065--67551152 Score: 113
Period size: 38 Copynumber: 2.3 Consensus size: 38
67551055 TTATGCTGAA
* * * *
67551065 GATATTCGGGCTATGTGCTTAGTAGGCTTTGTGTCGGT
1 GATATTCGGGCTATGTGCCTAGCAAGCTTTATGTCGGT
*
67551103 GATATTCGGGCTATGTGCCTGGCAAGCTTTATGTCGGT
1 GATATTCGGGCTATGTGCCTAGCAAGCTTTATGTCGGT
* *
67551141 GTTATTCAGGCT
1 GATATTCGGGCT
67551153 TTATTCCTAG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.15, C:0.16, G:0.32, T:0.38
Consensus pattern (38 bp):
GATATTCGGGCTATGTGCCTAGCAAGCTTTATGTCGGT
Found at i:67560996 original size:96 final size:95
Alignment explanation
Indices: 67560791--67561037 Score: 261
Period size: 96 Copynumber: 2.6 Consensus size: 95
67560781 GTCCCGTCAG
* * * * *
67560791 ACTCCAGATGTTGCCATAATCAAGTTATGGTCTTACACAATCTACCCTTATG-TT-AACATCTTG
1 ACTCCATATATTGCCAT-ATTAAGCTATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTG
* * *
67560854 GCAAAATACCCTATGTTTATTGTCCTGATGG
65 GCAAAATACCATATGTTTATTCTCCTGATGA
* *
67560885 ACACCATA-AGCTGCCATAGTTAAGCTATGGTCTTACACAATCTACCCTCATGTTTAAACATCTT
1 ACTCCATATA-TTGCCATA-TTAAGCTATGGTCTTACACAATCTACCCTCATGTTTAAACATCTT
** * *
67560949 GGTGAACTACCATGTGTTTATTCTCCT-AGTGA
64 GGCAAAATACCATATGTTTATTCTCCTGA-TGA
* *
67560981 ACTCCATATATTGCCATATTCGAGCTATGTTCTTACACAATCTAACCC-CATGTTTAA
1 ACTCCATATATTGCCATATT-AAGCTATGGTCTTACACAATCT-ACCCTCATGTTTAA
67561038 CGTTTTGGTG
Statistics
Matches: 127, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
93 1 0.01
94 42 0.33
95 5 0.04
96 74 0.58
97 5 0.04
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.34
Consensus pattern (95 bp):
ACTCCATATATTGCCATATTAAGCTATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTGG
CAAAATACCATATGTTTATTCTCCTGATGA
Found at i:67561101 original size:95 final size:96
Alignment explanation
Indices: 67560816--67561113 Score: 265
Period size: 96 Copynumber: 3.1 Consensus size: 96
67560806 ATAATCAAGT
* ** * *
67560816 TATGGTCTTACACAATCTACCCTTATG-TT-AACATCTTGGCAAAATACC-CTATGTTTATTGTC
1 TATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTGGTGAACTACCAC-ATGTTTATTATC
* * * *
67560878 CT-GATGGACACCATAAGCTGCCATAGTTA-AGC
65 CTAG-TGAACTCCATATGCTTCCATAG-TAGAGC
** *
67560910 TATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTGGTGAACTACCATGTGTTTATTCTCC
1 TATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTGGTGAACTACCACATGTTTATTATCC
* * *
67560975 TAGTGAACTCCATAT-ATTGCCATATTCGAGC
66 TAGTGAACTCCATATGCTT-CCATAGTAGAGC
* * * * * *
67561006 TATGTTCTTACACAATCTAACCC-CATGTTT-AACGTTTTGGTGGATTACCCCATGTTTATTAT-
1 TATGGTCTTACACAATCT-ACCCTCATGTTTAAACATCTTGGTGAACTACCACATGTTTATTATC
*
67561068 CTCG-GTAGACTCCATATGCTTCCATAGTAGAGC
65 CTAGTG-A-ACTCCATATGCTTCCATAGTAGAGC
67561101 TATGGTCTTACAC
1 TATGGTCTTACAC
67561114 CTTAAACCTC
Statistics
Matches: 166, Mismatches: 28, Indels: 19
0.78 0.13 0.09
Matches are distributed among these distances:
93 1 0.01
94 30 0.18
95 59 0.36
96 71 0.43
97 5 0.03
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (96 bp):
TATGGTCTTACACAATCTACCCTCATGTTTAAACATCTTGGTGAACTACCACATGTTTATTATCC
TAGTGAACTCCATATGCTTCCATAGTAGAGC
Found at i:67563988 original size:12 final size:12
Alignment explanation
Indices: 67563956--67563997 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
67563946 CCACACACGC
*
67563956 CCATGTGCCAGG
1 CCATGTGCTAGG
* *
67563968 CCGTATGCTAGG
1 CCATGTGCTAGG
67563980 CCATGTGCTAGG
1 CCATGTGCTAGG
67563992 CCATGT
1 CCATGT
67563998 AACAACCTGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.17, C:0.29, G:0.31, T:0.24
Consensus pattern (12 bp):
CCATGTGCTAGG
Found at i:67568835 original size:26 final size:26
Alignment explanation
Indices: 67568806--67568861 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
67568796 CATTCCGACC
* *
67568806 CACAGCTCGTGCGAGTAGGCCCATTT
1 CACAGCTCGTGCGAGCAGACCCATTT
* * *
67568832 CACAGCTTGTGTGAGCAGACTCATTT
1 CACAGCTCGTGCGAGCAGACCCATTT
67568858 CACA
1 CACA
67568862 ACTTGTGTGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (26 bp):
CACAGCTCGTGCGAGCAGACCCATTT
Found at i:67569176 original size:28 final size:28
Alignment explanation
Indices: 67569136--67569191 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
67569126 AATTTAAATG
67569136 AATGATGTTTAAGTATGCTAACATGTTT
1 AATGATGTTTAAGTATGCTAACATGTTT
67569164 AATGATGTTTAAGTATGCTAACATGTTT
1 AATGATGTTTAAGTATGCTAACATGTTT
67569192 GTGTTGGTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (28 bp):
AATGATGTTTAAGTATGCTAACATGTTT
Found at i:67576662 original size:68 final size:65
Alignment explanation
Indices: 67576590--67576739 Score: 160
Period size: 71 Copynumber: 2.2 Consensus size: 65
67576580 ATACTATGTA
* * * *
67576590 GTAGCTAGGTCACATGTGTGAT-ACGGGATGTATCCCATGTAGACAAGAGAGCTACAGGAAAGAT
1 GTAGCTAGGTCACATGTGTGATCAAGGGAAGGATACCATGTAGACAAGAGAGCTAC--G--AGAT
67576654 AAAT
62 AAAT
* * *
67576658 GTAGCTAGGTCGCATATGTGATCCCAAGTGAAGGATACCATGTAGACAAGAGAGCTACGAGATAA
1 GTAGCTAGGTCACATGTGTGAT--CAAGGGAAGGATACCATGTAGACAAGAGAGCTACGAGATAA
67576723 AT
64 AT
*
67576725 -TGGCTAGGTCACATG
1 GTAGCTAGGTCACATG
67576740 GGTGGTACTA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
66 12 0.17
67 8 0.12
68 20 0.29
69 1 0.01
71 28 0.41
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (65 bp):
GTAGCTAGGTCACATGTGTGATCAAGGGAAGGATACCATGTAGACAAGAGAGCTACGAGATAAAT
Found at i:67585844 original size:40 final size:39
Alignment explanation
Indices: 67585797--67585964 Score: 133
Period size: 40 Copynumber: 4.2 Consensus size: 39
67585787 GGGCTAAGTC
*
67585797 CCGAAGGCTTTTATGCTAGTGACTATATCCGGACAGAGAT
1 CCGAAGGCATTTATGCTAGTGACTATATCCGGACA-AGAT
* * * * ** *
67585837 CCAAAGGCATTTGTGCGAGTTG-CTATATCTGGGTTAAGAC
1 CCGAAGGCATTTATGCTAG-TGACTATATC-CGGACAAGAT
* * * *
67585877 CCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-T
1 CCGAAGGCATTTATGCTAGTGACTATATCCGGAC-AAGAT
* * *
67585916 CCCGAAGGCATTTATGCTAGTGACCATATCCGGGCTAAGAC
1 -CCGAAGGCATTTATGCTAGTGACTATATCCGGAC-AAGAT
67585957 CCGAAGGC
1 CCGAAGGC
67585965 CTTGTGCGAG
Statistics
Matches: 101, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTATGCTAGTGACTATATCCGGACAAGAT
Found at i:67585924 original size:80 final size:79
Alignment explanation
Indices: 67585781--67586000 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
67585771 CATTCGAATG
* * * *
67585781 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGAC-AGAGAT-CCAAAGG
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTA-AG-TCCCGAAGG
* *
67585844 CATTTGTGCGAGTTG-CT
63 CATTTATGCGAG-TGACC
* * * *
67585861 ATATCTGGGTTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCA
*
67585926 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * * *
67585941 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GACTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAG
67586001 ATACTTGGGT
Statistics
Matches: 117, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
78 13 0.11
79 20 0.17
80 83 0.71
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGACTAAGTCCCGAAGGCAT
TTATGCGAGTGACC
Found at i:67593991 original size:40 final size:40
Alignment explanation
Indices: 67593931--67594114 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
67593921 TATTTGAATG
*
67593931 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
67593971 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * * *
67594011 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
67594051 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
67594091 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
67594115 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:67594064 original size:80 final size:80
Alignment explanation
Indices: 67593931--67594150 Score: 279
Period size: 80 Copynumber: 2.8 Consensus size: 80
67593921 TATTTGAATG
* * * *
67593931 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
* *
67593995 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
*
67594011 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAG-TCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGC
*
67594075 ATTTATGCTAGTGACC
65 ATTTATGCGAGTGACC
* * *
67594091 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAG
67594151 ATACTTGGGT
Statistics
Matches: 124, Mismatches: 13, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 90 0.73
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGATCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:67600664 original size:39 final size:40
Alignment explanation
Indices: 67600619--67600827 Score: 116
Period size: 41 Copynumber: 5.2 Consensus size: 40
67600609 CGGGGTTTAG
* * *
67600619 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
67600658 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
67600698 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
67600738 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
** * * * *
67600779 CCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
*
67600820 CCAGATAT
1 CCGGATAT
67600828 CATTCGAGTA
Statistics
Matches: 149, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 18 0.12
40 61 0.41
41 67 0.45
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:67600769 original size:41 final size:41
Alignment explanation
Indices: 67600642--67600827 Score: 252
Period size: 41 Copynumber: 4.6 Consensus size: 41
67600632 CTCGCACAAG
* * * * * *
67600642 GCCTTCGGGTCTTAACCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
67600682 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
* *
67600722 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAA
67600763 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
*
67600804 GCCTTCGGGACTTAGCCCAGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
67600828 CATTCGAGTA
Statistics
Matches: 132, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
39 3 0.02
40 59 0.45
41 67 0.51
42 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (41 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAA
Found at i:67604681 original size:56 final size:56
Alignment explanation
Indices: 67604595--67604714 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
67604585 ACAAGGGATG
67604595 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
67604651 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
67604707 ATGGGCAA
1 ATGGGCAA
67604715 TAAACTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:67606082 original size:40 final size:40
Alignment explanation
Indices: 67605844--67606068 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
67605834 TCGAATGATG
* * * *
67605844 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
67605884 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67605924 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
67605963 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
67606003 TCCGGGTTACGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
67606044 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
67606069 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:67626130 original size:55 final size:54
Alignment explanation
Indices: 67626043--67626297 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
67626033 ATTAGGGTTT
* *
67626043 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAA-GTTTCATAAGGC
* * * * *
67626098 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACGATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * *
67626153 AAAGG-TCCCATGTAAGACCATGTCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * *
67626206 ATGGATACCATGTAAGACCATGTCAAGACATAGCAATGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * * *
67626255 AAGGATACCACGTACGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAG
67626298 GTACCCGTGT
Statistics
Matches: 168, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
49 37 0.22
52 5 0.03
53 44 0.26
54 12 0.07
55 66 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:67626249 original size:108 final size:110
Alignment explanation
Indices: 67626050--67626250 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
67626040 TTTAAGGATA
*
67626050 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* * *
67626115 CCATGTTAAGACATGGCATTGATAAGTTACGATAAGGCAAAGGTC
66 CCATGTCAAGACATAGCAATGATAAGTTACGATAAGGCAAAGGTC
* * * *
67626160 CCATGTAAGACCATGTCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCATGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
67626222 ACCATGTCAAGACATAGCAATGGTAAGTT
65 ACCATGTCAAGACATAGCAATGATAAGTT
67626251 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATAGCAATGATAAGTTACGATAAGGCAAAGGTC
Found at i:67626392 original size:23 final size:24
Alignment explanation
Indices: 67626366--67626413 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
67626356 AAGGTAAGGT
*
67626366 AAGGTAAGACGAGTT-ATACTAGA
1 AAGGTAAGACAAGTTCATACTAGA
*
67626389 AAGGTAAGACAAGTTCATGCTAGA
1 AAGGTAAGACAAGTTCATACTAGA
67626413 A
1 A
67626414 GAGCAAAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.44, C:0.10, G:0.25, T:0.21
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATACTAGA
Found at i:67626510 original size:16 final size:16
Alignment explanation
Indices: 67626489--67626519 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
67626479 ATAAATTTGA
67626489 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
67626505 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
67626520 AGTGTTGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:67626530 original size:20 final size:20
Alignment explanation
Indices: 67626490--67626530 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
67626480 TAAATTTGAT
*
67626490 TAAGTAAGTAAGTATTTAAG
1 TAAGTAAGTAAGTATTGAAG
* *
67626510 TAAGTGAGTAAGTGTTGAAG
1 TAAGTAAGTAAGTATTGAAG
67626530 T
1 T
67626531 TTAAAATATG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.34
Consensus pattern (20 bp):
TAAGTAAGTAAGTATTGAAG
Found at i:67627546 original size:37 final size:37
Alignment explanation
Indices: 67627486--67627563 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
67627476 TATTACGAAG
* * *
67627486 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
67627523 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
67627560 TCTT
1 TCTT
67627564 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:67627751 original size:47 final size:47
Alignment explanation
Indices: 67627682--67627953 Score: 429
Period size: 47 Copynumber: 5.7 Consensus size: 47
67627672 CCCTTCGGGA
* * * * *
67627682 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
67627729 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67627776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67627823 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67627872 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
67627919 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
67627954 AGAATCCTAA
Statistics
Matches: 212, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 164 0.77
49 47 0.22
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67627879 original size:96 final size:96
Alignment explanation
Indices: 67627682--67627932 Score: 425
Period size: 96 Copynumber: 2.6 Consensus size: 96
67627672 CCCTTCGGGA
* * * * *
67627682 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
67627745 ACTTTCACATTCATCACATCGACCATTAGGC
66 ACTTTCACATTCATCACATCGACCATTAGGC
67627776 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
67627841 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGACCATTAGGC
*
67627872 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
67627933 GCATGTTCAC
Statistics
Matches: 148, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
94 50 0.34
96 98 0.66
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGACCATTAGGC
Found at i:67627951 original size:143 final size:141
Alignment explanation
Indices: 67627682--67627953 Score: 438
Period size: 143 Copynumber: 1.9 Consensus size: 141
67627672 CCCTTCGGGA
* * *
67627682 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
67627747 TTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACATCCATCACATC
67627812 GGCCATTAGGC
131 GGCCATTAGGC
*
67627823 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATAC
* * *
67627888 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-TGTTCACATCCATCAC
64 ACTTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACT-TTCACATCCATCAC
67627952 AT
128 AT
67627954 AGAATCCTAA
Statistics
Matches: 120, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
141 10 0.08
142 2 0.02
143 108 0.90
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGACCATTAGGCCTTATCACATATATACACTTTCACATCCATCACATC
GGCCATTAGGC
Found at i:67633317 original size:20 final size:21
Alignment explanation
Indices: 67633294--67633332 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
67633284 TGAAAATATG
67633294 TAAAATTAATGAAA-AAATTC
1 TAAAATTAATGAAATAAATTC
* *
67633314 TAAATTTTATGAAATAAAT
1 TAAAATTAATGAAATAAAT
67633333 GGGCTATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (21 bp):
TAAAATTAATGAAATAAATTC
Found at i:67634158 original size:23 final size:22
Alignment explanation
Indices: 67634131--67634187 Score: 60
Period size: 26 Copynumber: 2.4 Consensus size: 22
67634121 AGCCTGGATA
*
67634131 AGCTTCCTAATAGGCTCTTTGTG
1 AGCTTCCTAAT-GGCTCTTTGCG
67634154 AGCTTCCCGATTAATGGCTCTTTGCG
1 AGCTT-CC---TAATGGCTCTTTGCG
67634180 AGCTTCCT
1 AGCTTCCT
67634188 GTTATATGGC
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
22 1 0.03
23 5 0.17
24 2 0.07
25 2 0.07
26 15 0.52
27 4 0.14
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (22 bp):
AGCTTCCTAATGGCTCTTTGCG
Found at i:67651840 original size:18 final size:17
Alignment explanation
Indices: 67651817--67651852 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
67651807 ATACATGCAC
67651817 ATAACATAACATTCATCA
1 ATAACATAACATT-ATCA
*
67651835 ATAACATAATATTATCA
1 ATAACATAACATTATCA
67651852 A
1 A
67651853 CTTTTATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.31
Consensus pattern (17 bp):
ATAACATAACATTATCA
Found at i:67653929 original size:46 final size:46
Alignment explanation
Indices: 67653809--67653934 Score: 216
Period size: 46 Copynumber: 2.7 Consensus size: 46
67653799 TGTAACCCGC
* * * *
67653809 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
67653855 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
67653901 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
67653935 AGATGCCCAA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:67658765 original size:47 final size:47
Alignment explanation
Indices: 67658687--67659046 Score: 576
Period size: 47 Copynumber: 7.6 Consensus size: 47
67658677 CCCTTCGAGA
* * * * * *
67658687 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67658734 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67658781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67658828 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67658877 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67658924 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
67658971 CTAATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
67659020 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
67659047 TATTCAAATA
Statistics
Matches: 292, Mismatches: 17, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 202 0.69
49 90 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:67658884 original size:96 final size:94
Alignment explanation
Indices: 67658687--67659046 Score: 576
Period size: 96 Copynumber: 3.8 Consensus size: 94
67658677 CCCTTCGAGA
* * * * * * * *
67658687 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
67658752 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
67658781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
67658846 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
67658877 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
67658942 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
67658971 CTAATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
67659036 ACTTTCACATT
64 ACTTTCACATT
67659047 TATTCAAATA
Statistics
Matches: 248, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
94 91 0.37
96 157 0.63
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:67658956 original size:143 final size:143
Alignment explanation
Indices: 67658687--67659046 Score: 625
Period size: 143 Copynumber: 2.5 Consensus size: 143
67658677 CCCTTCGAGA
* * * * *
67658687 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
67658750 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
67658815 TCGGCCATTAGGC
131 TCGGCCATTAGGC
67658828 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
67658893 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
67658958 TCGGCCATTAGGC
131 TCGGCCATTAGGC
* ** *
67658971 CTAATCACATATATATACACTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
67659036 ACTTTCACATT
66 ACTTTCACATT
67659047 TATTCAAATA
Statistics
Matches: 208, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
141 10 0.05
142 1 0.00
143 197 0.95
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:67661710 original size:27 final size:28
Alignment explanation
Indices: 67661666--67661747 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 28
67661656 GGAGGAAGTG
* **
67661666 TACTGTTACTGGTGGCTTTGCTAC-ATA
1 TACTGATACTGGCAGCTTTGCTACGATA
*
67661693 TACTGATACTGGCAGCTTTACTACGATA
1 TACTGATACTGGCAGCTTTGCTACGATA
* *
67661721 -A-T-ATTTCTGGCAGCTTTGCTAAGATA
1 TACTGA-TACTGGCAGCTTTGCTACGATA
67661747 T
1 T
67661748 TTGTGTGTTG
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
25 1 0.02
26 20 0.44
27 21 0.47
28 3 0.07
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (28 bp):
TACTGATACTGGCAGCTTTGCTACGATA
Found at i:67663949 original size:27 final size:26
Alignment explanation
Indices: 67663919--67664056 Score: 134
Period size: 27 Copynumber: 5.2 Consensus size: 26
67663909 GTTTACTAAT
* *
67663919 ATTATCGAAATACCGTCGATTTGTAAA
1 ATTA-CGAAATACCCTCGACTTGTAAA
* *
67663946 ATTACTAAAATACCTTCGACTTGTAAA
1 ATTAC-GAAATACCCTCGACTTGTAAA
* * * *
67663973 ATTACCAAAGTACCCCCGGCTTATAAA
1 ATTACGAAA-TACCCTCGACTTGTAAA
* *
67664000 ATTACCGAAATACCGTCGA-TTATAAA
1 ATTA-CGAAATACCCTCGACTTGTAAA
67664026 ATTACTGAAATACCCTCGACTTGTAAA
1 ATTAC-GAAATACCCTCGACTTGTAAA
67664053 ATTA
1 ATTA
67664057 TCAAAGTACC
Statistics
Matches: 92, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.01
26 27 0.29
27 60 0.65
28 4 0.04
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (26 bp):
ATTACGAAATACCCTCGACTTGTAAA
Found at i:67664062 original size:80 final size:81
Alignment explanation
Indices: 67663919--67664068 Score: 248
Period size: 80 Copynumber: 1.9 Consensus size: 81
67663909 GTTTACTAAT
* * *
67663919 ATTATCGAAATACCGTCGATTTGTAAAATTACTAAAATACCTTCGACTTGTAAAATTACCAAAGT
1 ATTACCGAAATACCGTCGATTTATAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGT
67663984 ACCCCCGGCTTATAAA
66 ACCCCCGGCTTATAAA
* *
67664000 ATTACCGAAATACCGTCGA-TTATAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGT
1 ATTACCGAAATACCGTCGATTTATAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGT
67664064 ACCCC
66 ACCCC
67664069 TGATTTACAG
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
80 46 0.72
81 18 0.28
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.29
Consensus pattern (81 bp):
ATTACCGAAATACCGTCGATTTATAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGT
ACCCCCGGCTTATAAA
Found at i:67664083 original size:80 final size:81
Alignment explanation
Indices: 67663919--67664113 Score: 241
Period size: 80 Copynumber: 2.4 Consensus size: 81
67663909 GTTTACTAAT
* * *
67663919 ATTATCGAAATACCGTCGATTTGTAAAATTACTAAAATACCTTCGACTTGTAAAATTACCAAAGT
1 ATTACCGAAATACCGTCGATTTATAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGT
* *
67663984 ACCCCCGGCTTATAAA
66 ACCCCCGACTTACAAA
* *
67664000 ATTACCGAAATACCGTCGA-TTATAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGT
1 ATTACCGAAATACCGTCGATTTATAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGT
* * *
67664064 ACCCCTGATTTACAGA
66 ACCCCCGACTTACAAA
** * *
67664080 ATTACC-ATTTTACCCTCGATTTATAGAATTACTA
1 ATTACCGA-AATACCGTCGATTTATAAAATTACTA
67664114 TTTTACCCTC
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 1 0.01
80 66 0.68
81 30 0.31
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (81 bp):
ATTACCGAAATACCGTCGATTTATAAAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGT
ACCCCCGACTTACAAA
Found at i:67664093 original size:27 final size:26
Alignment explanation
Indices: 67664066--67664208 Score: 160
Period size: 27 Copynumber: 5.3 Consensus size: 26
67664056 ATCAAAGTAC
*
67664066 CCCTGATTTACAGAATTACCATTTTA
1 CCCTGATTTACAAAATTACCATTTTA
* * *
67664092 CCCTCGATTTATAGAATTACTATTTTA
1 CCCT-GATTTACAAAATTACCATTTTA
* * *
67664119 CCCTCAGTTTACAAAATTATCGTTTTA
1 CCCTGA-TTTACAAAATTACCATTTTA
67664146 CCCTCGATTTACAAAATTACCATTTTA
1 CCCT-GATTTACAAAATTACCATTTTA
* *
67664173 CCCTCAGTTTACAAAATTACCGTTTTA
1 CCCTGA-TTTACAAAATTACCATTTTA
67664200 CCCTCGATT
1 CCCT-GATT
67664209 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 14, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
26 6 0.06
27 90 0.92
28 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (26 bp):
CCCTGATTTACAAAATTACCATTTTA
Found at i:67664110 original size:54 final size:53
Alignment explanation
Indices: 67664072--67664208 Score: 211
Period size: 54 Copynumber: 2.5 Consensus size: 53
67664062 GTACCCCTGA
* * *
67664072 TTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTATTTTACCCTCAG
1 TTTACAAAATTACCGTTTTACCCTCGATTTATAAAATTAC-ATTTTACCCTCAG
* *
67664126 TTTACAAAATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAG
1 TTTACAAAATTACCGTTTTACCCTCGATTTATAAAATTA-CATTTTACCCTCAG
67664180 TTTACAAAATTACCGTTTTACCCTCGATT
1 TTTACAAAATTACCGTTTTACCCTCGATT
67664209 GTGAAATTAC
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
54 75 0.99
55 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (53 bp):
TTTACAAAATTACCGTTTTACCCTCGATTTATAAAATTACATTTTACCCTCAG
Found at i:67664136 original size:81 final size:81
Alignment explanation
Indices: 67664050--67664204 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 81
67664040 CTCGACTTGT
* * * *
67664050 AAAATTATCAAAGTACCC-CTGATTTACAGAATTACCATTTTACCCTC-GATTTATAGAATTACT
1 AAAATTATCAAAGTACCCTC-GATTTACAAAATTACCATTTTACCCTCAG-TTTACAAAATTACC
67664113 ATTTTACCCTCAGTTTAC
64 ATTTTACCCTCAGTTTAC
**** *
67664131 AAAATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCGT
1 AAAATTATCAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCAT
67664196 TTTACCCTC
66 TTTACCCTC
67664205 GATTGTGAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
81 61 0.97
82 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.37
Consensus pattern (81 bp):
AAAATTATCAAAGTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTTTACAAAATTACCAT
TTTACCCTCAGTTTAC
Found at i:67664230 original size:27 final size:27
Alignment explanation
Indices: 67664207--67664363 Score: 174
Period size: 27 Copynumber: 5.8 Consensus size: 27
67664197 TTACCCTCGA
**
67664207 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTGAAATTACCAAAATACCCCTAGT
**
67664233 AGGATAGAA-TTACCAAAATACCCCTAGT
1 TTG-T-GAAATTACCAAAATACCCCTAGT
*
67664261 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTGAAATTACCAAAATACCCCTAGT
* *
67664288 TTGTAAAATTACCAAAATACCACTAGT
1 TTGTGAAATTACCAAAATACCCCTAGT
** * *
67664315 TTGTGAAATTACTGAAATACCCTTAAT
1 TTGTGAAATTACCAAAATACCCCTAGT
*
67664342 TTGTAAAATTACCAAAATACCC
1 TTGTGAAATTACCAAAATACCC
67664364 ATGATTTACA
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.03
27 101 0.92
28 6 0.05
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTGAAATTACCAAAATACCCCTAGT
Found at i:67664370 original size:27 final size:27
Alignment explanation
Indices: 67664240--67664417 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
67664230 TGTAGGATAG
*
67664240 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCATAGTTTGTAA
*
67664267 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCATAGTTTGTAA
*
67664294 AATTACCAAAATA-CCACTAGTTTGTGA
1 AATTACCAAAATACCCA-TAGTTTGTAA
** * *
67664321 AATTACTGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCATAGTTTGTAA
**
67664348 AATTACCAAAATACCCAT-GATTTACAA
1 AATTACCAAAATACCCATAG-TTTGTAA
** * * *
67664375 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCATAGTTTGTAA
* *
67664402 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
67664418 TTGTAGGATG
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
26 2 0.02
27 119 0.96
28 3 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCATAGTTTGTAA
Found at i:67664378 original size:54 final size:54
Alignment explanation
Indices: 67664207--67664417 Score: 221
Period size: 54 Copynumber: 3.9 Consensus size: 54
67664197 TTACCCTCGA
* * ** * *
67664207 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACTGAAATACCCTTAGTTTG-TAAAATTACCAAAATACCCATAGT
** *
67664261 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATA-CCACTAGT
1 TTGTAAAATTACTGAAATACCCTTAGTTTGTAAAATTACCAAAATACCCA-TAGT
* *
67664315 TTGTGAAATTACTGAAATACCCTTAATTTGTAAAATTACCAAAATACCCAT-GAT
1 TTGTAAAATTACTGAAATACCCTTAGTTTGTAAAATTACCAAAATACCCATAG-T
** * * * *
67664369 TTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCC
1 TTGTAAAATTACTGAAATACCCTTAGTTTGTAAAATTACCAAAATACCC
67664418 TTGTAGGATG
Statistics
Matches: 133, Mismatches: 20, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
53 3 0.02
54 124 0.93
55 6 0.05
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACTGAAATACCCTTAGTTTGTAAAATTACCAAAATACCCATAGT
Found at i:67664418 original size:81 final size:79
Alignment explanation
Indices: 67664212--67664419 Score: 213
Period size: 81 Copynumber: 2.6 Consensus size: 79
67664202 CTCGATTGTG
** * *
67664212 AAATTACTGAAATACCCCTGTAGGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAA
1 AAATTACTGAAATA-CCCTGTTTG-TAGAATTACCAAAATACCCTTAATTTGTAAAATTACCAAA
* **
67664277 ATACCCCTAGTTTGTA
64 ATACCCATAGTTTACA
** **
67664293 AAATTACCAAAATACCACTAGTTTGT-GAAATTACTGAAATACCCTTAATTTGTAAAATTACCAA
1 AAATTACTGAAATACC-CT-GTTTGTAG-AATTACCAAAATACCCTTAATTTGTAAAATTACCAA
67664357 AATACCCAT-GATTTACA
63 AATACCCATAG-TTTACA
* *
67664374 AAATTACTGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCTT
1 AAATTACTGAAATACCC-T-GTTTGTAGAATTACCAAAATACCCTT
67664420 GTAGGATGAA
Statistics
Matches: 103, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
80 5 0.05
81 94 0.91
82 4 0.04
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (79 bp):
AAATTACTGAAATACCCTGTTTGTAGAATTACCAAAATACCCTTAATTTGTAAAATTACCAAAAT
ACCCATAGTTTACA
Found at i:67665620 original size:24 final size:25
Alignment explanation
Indices: 67665561--67665621 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
67665551 GGAGGAAGTG
67665561 CTAAAAGGGCTATGCCCCAGTTTAT
1 CTAAAAGGGCTATGCCCCAGTTTAT
*
67665586 CGT-AAAGGGCTTTGCCCCAG-TTAT
1 C-TAAAAGGGCTATGCCCCAGTTTAT
67665610 -TAAAAGAGGCTA
1 CTAAAAG-GGCTA
67665622 GGCCTCGAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
22 1 0.03
23 4 0.13
24 8 0.26
25 17 0.55
26 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (25 bp):
CTAAAAGGGCTATGCCCCAGTTTAT
Found at i:67665873 original size:31 final size:31
Alignment explanation
Indices: 67665837--67665902 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
67665827 AGGCTTCGGT
*
67665837 CAGTGAAATGATTTTTGAAAAGACTTCGGCC
1 CAGTGAAATGATTTATGAAAAGACTTCGGCC
* *
67665868 CAGTGATATGATTTATGAAAAGGCTTCGGCC
1 CAGTGAAATGATTTATGAAAAGACTTCGGCC
67665899 CAGT
1 CAGT
67665903 ATATGTCGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (31 bp):
CAGTGAAATGATTTATGAAAAGACTTCGGCC
Found at i:67668223 original size:27 final size:26
Alignment explanation
Indices: 67668193--67668330 Score: 125
Period size: 27 Copynumber: 5.2 Consensus size: 26
67668183 GTTTACTAAT
* *
67668193 ATTATCGAAATACCGTCGATTTGTAAA
1 ATTA-CGAAATACCCTCGACTTGTAAA
* *
67668220 ATTACTAAAATACCTTCGACTTGTAAA
1 ATTAC-GAAATACCCTCGACTTGTAAA
* * ** *
67668247 ATTACCAAAGTACCCCCGGTTTATAAA
1 ATTACGAAA-TACCCTCGACTTGTAAA
* *
67668274 ATTACCGAAATACCGTTGA-TTGTAAA
1 ATTA-CGAAATACCCTCGACTTGTAAA
67668300 ATTACTGAAATACCCTCGACTTGTAAA
1 ATTAC-GAAATACCCTCGACTTGTAAA
67668327 ATTA
1 ATTA
67668331 TCAAAGTACC
Statistics
Matches: 89, Mismatches: 17, Indels: 10
0.77 0.15 0.09
Matches are distributed among these distances:
25 1 0.01
26 25 0.28
27 59 0.66
28 4 0.04
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (26 bp):
ATTACGAAATACCCTCGACTTGTAAA
Found at i:67668327 original size:53 final size:53
Alignment explanation
Indices: 67668193--67668340 Score: 156
Period size: 53 Copynumber: 2.8 Consensus size: 53
67668183 GTTTACTAAT
* *
67668193 ATTATCGAAATACCGTCGATTTGTAAAATTACTAAAATACCTTCGACTTGTAAA
1 ATTA-CGAAATACCCTCGATTTGTAAAATTACCAAAATACCTTCGACTTGTAAA
* * * * *
67668247 ATTACCAAAGTACCCCCGGTTTATAAAATTACCGAAATACCGTT-GA-TTGTAAA
1 ATTACGAAA-TACCCTCGATTTGTAAAATTACCAAAATACC-TTCGACTTGTAAA
* * *
67668300 ATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACC
1 ATTAC-GAAATACCCTCGATTTGTAAAATTACCAAAATACC
67668341 CCTGATTTAC
Statistics
Matches: 76, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
53 40 0.53
54 34 0.45
55 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (53 bp):
ATTACGAAATACCCTCGATTTGTAAAATTACCAAAATACCTTCGACTTGTAAA
Found at i:67668336 original size:80 final size:81
Alignment explanation
Indices: 67668183--67668360 Score: 250
Period size: 80 Copynumber: 2.2 Consensus size: 81
67668173 GAATACTTTA
* * *
67668183 GTTTACTAATATTATCGAAATACCGTCGATTTGTAAAATTACTAAAATACCTTCGACTTGTAAAA
1 GTTTA-TAAAATTACCGAAATACCGTCGATTTGTAAAATTACTAAAATACCCTCGACTTGTAAAA
67668248 TTACCAAAGTACCCCCG
65 TTACCAAAGTACCCCCG
* *
67668265 GTTTATAAAATTACCGAAATACCGTTGA-TTGTAAAATTACTGAAATACCCTCGACTTGTAAAAT
1 GTTTATAAAATTACCGAAATACCGTCGATTTGTAAAATTACTAAAATACCCTCGACTTGTAAAAT
* *
67668329 TATCAAAGTACCCCTG
66 TACCAAAGTACCCCCG
* * *
67668345 ATTTACAGAATTACCG
1 GTTTATAAAATTACCG
67668361 TTTTATCCTC
Statistics
Matches: 86, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
80 61 0.71
81 20 0.23
82 5 0.06
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (81 bp):
GTTTATAAAATTACCGAAATACCGTCGATTTGTAAAATTACTAAAATACCCTCGACTTGTAAAAT
TACCAAAGTACCCCCG
Found at i:67668374 original size:27 final size:27
Alignment explanation
Indices: 67668340--67668482 Score: 175
Period size: 27 Copynumber: 5.3 Consensus size: 27
67668330 ATCAAAGTAC
*
67668340 CCCT-GATTTACAGAATTACCGTTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
* * ***
67668366 TCCTCGATTTACAGAATTAATATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
*
67668393 CCCTC-AGTTTACAAAATTATCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
*
67668420 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCGTTTTA
67668447 CCCTC-AGTTTACAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCGTTTTA
67668474 CCCTCGATT
1 CCCTCGATT
67668483 GTGAAATTAC
Statistics
Matches: 100, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.05
27 93 0.93
28 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCGTTTTA
Found at i:67668384 original size:54 final size:54
Alignment explanation
Indices: 67668346--67668482 Score: 213
Period size: 54 Copynumber: 2.5 Consensus size: 54
67668336 GTACCCCTGA
* * *
67668346 TTTACAGAATTACCGTTTTATCCTCGATTTACAGAATTAAT-ATTTTACCCTCAG
1 TTTACAAAATTACCGTTTTACCCTCGATTTACAAAATT-ATCATTTTACCCTCAG
* *
67668400 TTTACAAAATTATCGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAG
1 TTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTATCATTTTACCCTCAG
67668454 TTTACAAAATTACCGTTTTACCCTCGATT
1 TTTACAAAATTACCGTTTTACCCTCGATT
67668483 GTGAAATTAC
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
53 1 0.01
54 75 0.99
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
TTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTATCATTTTACCCTCAG
Found at i:67668504 original size:27 final size:26
Alignment explanation
Indices: 67668474--67668643 Score: 155
Period size: 27 Copynumber: 6.3 Consensus size: 26
67668464 TACCGTTTTA
* **
67668474 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* *
67668501 CCCTG-TAGGATAGAATTACCAAAATAC
1 CCCTGAT-TG-TAAAATTACCAAAATAC
*
67668528 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
*
67668555 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTAAAATTACCAAAATAC
* * *
67668582 CACTGGTTTGTAAAATTACCGAAATA-
1 CCCT-GATTGTAAAATTACCAAAATAC
*
67668608 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTAAAATTACCAAAATAC
67668636 CCCTGATT
1 CCCTGATT
67668644 TACAAAATTA
Statistics
Matches: 121, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
25 1 0.01
26 7 0.06
27 106 0.88
28 6 0.05
29 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (26 bp):
CCCTGATTGTAAAATTACCAAAATAC
Found at i:67668644 original size:27 final size:27
Alignment explanation
Indices: 67668514--67668684 Score: 186
Period size: 27 Copynumber: 6.3 Consensus size: 27
67668504 TGTAGGATAG
67668514 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
67668541 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* *
67668568 AATTACCAAAATACCACTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
67668595 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
**
67668622 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
** * * *
67668649 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCCTGATTTGTAA
*
67668676 ATTTACCAA
1 AATTACCAA
67668685 GACACCCTTA
Statistics
Matches: 121, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.02
27 114 0.94
28 4 0.03
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:67668673 original size:54 final size:54
Alignment explanation
Indices: 67668481--67668684 Score: 216
Period size: 54 Copynumber: 3.8 Consensus size: 54
67668471 TTACCCTCGA
* * ** *
67668481 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCCCT-AGT
1 TTGTAAAATTACCGAAATACCCCTAGTTTG-TAAAATTACCAAAATACCCCTGA-T
* * *
67668535 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGAT
*
67668589 TTGTAAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCGAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGAT
** * * * * *
67668643 TTACAAAATTACTGAAATACCCTTGGTTTGTAGATTTACCAA
1 TTGTAAAATTACCGAAATACCCCTAGTTTGTAAAATTACCAA
67668685 GACACCCTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
53 4 0.03
54 116 0.92
55 6 0.05
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGAT
Found at i:67668692 original size:81 final size:80
Alignment explanation
Indices: 67668486--67668684 Score: 226
Period size: 81 Copynumber: 2.5 Consensus size: 80
67668476 CTCGATTGTG
** *
67668486 AAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATACCC-CTAGTTTGTAAAATTACCA
1 AAATTACTGAAATA-CCCTGGTTTG-TAGAATTACC-AAATACCCTCTAATTTGTAAAATTACCA
**
67668549 AAATACCCCTAGTTTGTA
63 AAATACCCCTAGTTTACA
** *
67668567 AAATTACCAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTC-AATTTGTAAAATTACCAA
1 AAATTACTGAAATACC-CTGGTTTGTAGAATTACC-AAATACCCTCTAATTTGTAAAATTACCAA
67668631 AATACCCCT-GATTTACA
64 AATACCCCTAG-TTTACA
*
67668648 AAATTACTGAAATACCCTTGGTTTGTAGATTTACCAA
1 AAATTACTGAAATACCC-TGGTTTGTAGAATTACCAA
67668685 GACACCCTTA
Statistics
Matches: 100, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
80 6 0.06
81 90 0.90
82 4 0.04
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (80 bp):
AAATTACTGAAATACCCTGGTTTGTAGAATTACCAAATACCCTCTAATTTGTAAAATTACCAAAA
TACCCCTAGTTTACA
Found at i:67669593 original size:25 final size:25
Alignment explanation
Indices: 67669555--67669624 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
67669545 AGGAAGTGCT
* *
67669555 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
67669580 AAAAGGGTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
67669605 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
67669625 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:67669637 original size:24 final size:24
Alignment explanation
Indices: 67669554--67669637 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
67669544 GAGGAAGTGC
* *
67669554 TAAAAGGGCTATGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* *
67669579 GAAAAGGGTTTTGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
67669603 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
67669627 TAAAAGAGGCT
1 TAAAAG-GGCT
67669638 AGGTCTCTAG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.16
25 37 0.74
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:67669880 original size:30 final size:31
Alignment explanation
Indices: 67669844--67669921 Score: 106
Period size: 31 Copynumber: 2.5 Consensus size: 31
67669834 CGCTCACAGT
*
67669844 AAAGGCTTCGG-TCAGTGACATGATTTATGA
1 AAAGGCTTCGGCCCAGTGACATGATTTATGA
*
67669874 AAAGGCTAT-GGCCCAGTGATATGATTTATGA
1 AAAGGCT-TCGGCCCAGTGACATGATTTATGA
*
67669905 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
67669922 ATATGTCGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
30 10 0.24
31 32 0.76
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGACATGATTTATGA
Found at i:67675074 original size:20 final size:20
Alignment explanation
Indices: 67675049--67675126 Score: 72
Period size: 20 Copynumber: 3.9 Consensus size: 20
67675039 GATGCATAAC
67675049 AGAGGCACCT-AAGTGCAAAT
1 AGAGGCA-CTAAAGTGCAAAT
*
67675069 AGAGGCA-TAAATGTG-TAAT
1 AGAGGCACTAAA-GTGCAAAT
*
67675088 CAGAGGCACTTAAGTGCAAAT
1 -AGAGGCACTAAAGTGCAAAT
* *
67675109 AAAGGCACTGAAGTGCAA
1 AGAGGCACTAAAGTGCAA
67675127 TCCCGTACAA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
18 1 0.02
19 5 0.10
20 36 0.75
21 6 0.12
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.18
Consensus pattern (20 bp):
AGAGGCACTAAAGTGCAAAT
Found at i:67681555 original size:11 final size:11
Alignment explanation
Indices: 67681539--67681571 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
67681529 GAAAAATTGT
67681539 AATTAAAGCAA
1 AATTAAAGCAA
*
67681550 AATTAAAACAA
1 AATTAAAGCAA
67681561 AATTAAAGCAA
1 AATTAAAGCAA
67681572 GAAAAACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.67, C:0.09, G:0.06, T:0.18
Consensus pattern (11 bp):
AATTAAAGCAA
Found at i:67684947 original size:6 final size:6
Alignment explanation
Indices: 67684891--67685009 Score: 66
Period size: 6 Copynumber: 19.3 Consensus size: 6
67684881 AAGAAACATT
* * * * *
67684891 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATTAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
67684940 ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCA-G-A
67684991 A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA AT
67685010 GTGAATGCAA
Statistics
Matches: 84, Mismatches: 18, Indels: 22
0.68 0.15 0.18
Matches are distributed among these distances:
5 5 0.06
6 67 0.80
7 9 0.11
8 3 0.04
ACGTcount: A:0.49, C:0.13, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:67684952 original size:25 final size:25
Alignment explanation
Indices: 67684912--67685009 Score: 106
Period size: 25 Copynumber: 3.7 Consensus size: 25
67684902 AATCAAAATG
* *
67684912 AGAATCAAAATTAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
67684937 AGAATCAGAATCAGAATCAAAATTAGGTGAC
1 AGAATCAGAATCAGAATC------AGGTGAC
* *
67684968 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGGTGAC
67684993 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
67685010 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
25 38 0.61
31 24 0.39
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:67685676 original size:27 final size:27
Alignment explanation
Indices: 67685638--67685863 Score: 308
Period size: 27 Copynumber: 8.4 Consensus size: 27
67685628 ACTTGCCCAT
*
67685638 AGGGGTATTTTGGTAATTCTACCCTAC
1 AGGGGTATTTTAGTAATTCTACCCTAC
* *
67685665 AGGGGTATTTTGGTATTTCTACCCTAC
1 AGGGGTATTTTAGTAATTCTACCCTAC
* * * *
67685692 AAGGGTATTTCAGTAATTCTATCCTAT
1 AGGGGTATTTTAGTAATTCTACCCTAC
67685719 AGGGGTATTTTAGTAATTCTACCCTAC
1 AGGGGTATTTTAGTAATTCTACCCTAC
* * *
67685746 AAGGGTATTTCAGTAATTCTACCATAC
1 AGGGGTATTTTAGTAATTCTACCCTAC
* * *
67685773 AGGGGTATTTCAGTAACTCTATCCTAC
1 AGGGGTATTTTAGTAATTCTACCCTAC
*
67685800 AAGGGTATTTTAGTAATTCTACCCTAC
1 AGGGGTATTTTAGTAATTCTACCCTAC
* *
67685827 AGGTGTATTTTAATAATTCTACCCTAC
1 AGGGGTATTTTAGTAATTCTACCCTAC
67685854 AGGGGTATTT
1 AGGGGTATTT
67685864 CAATAATTTT
Statistics
Matches: 173, Mismatches: 26, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 173 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTTAGTAATTCTACCCTAC
Found at i:67685723 original size:54 final size:54
Alignment explanation
Indices: 67685640--67686124 Score: 333
Period size: 54 Copynumber: 9.0 Consensus size: 54
67685630 TTGCCCATAG
** * *
67685640 GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAA
* *
67685694 GGGTATTTCAGTAATTCTATCCTATAGGGGTATTTTAGTAATTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAA
* * * *
67685748 GGGTATTTCAGTAATTCTACCATACAGGGGTATTTCAGTAACTCTATCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAA
* * * *
67685802 GGGTATTTTAGTAATTCTACCCTACAGGTGTATTTTAATAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAA
* ** * ***** *** **
67685856 GGGTATTTCAATAATT-T--TGTAAATCGAGGGTAAAACGGTAATTCTA-TAAATCGG
1 GGGTATTTCAGTAATTCTACCCTACA--G-GGGTATTTTAGTAATTCTACCCTA-CAA
* ** * * **
67685910 GGGTACTTCAGTAATTTCATA-AAT-CAGGGGTATTTTGGTAATTTTA-CAAACCAA
1 GGGTATTTCAGTAA-TTC-TACCCTACAGGGGTATTTTAGTAATTCTACCCTA-CAA
* ** * ** * * * **
67685964 TGGTATTTTGGTAATTTTA-CAAACCAGGGGTATTTTGGCAATTTTGTAAACTA-AA
1 GGGTATTTCAGTAATTCTACCCTA-CAGGGGTATTTTAGTAA--TTCTACCCTACAA
** * *
67686019 -GGTATTTTGGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTACCCTACAA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAA
* * *
67686072 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATGCTAGCCTACA
1 GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACA
67686125 GATATGAGAT
Statistics
Matches: 338, Mismatches: 77, Indels: 32
0.76 0.17 0.07
Matches are distributed among these distances:
51 3 0.01
52 10 0.03
53 7 0.02
54 303 0.90
55 7 0.02
56 4 0.01
57 3 0.01
58 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (54 bp):
GGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTACAA
Found at i:67685779 original size:81 final size:81
Alignment explanation
Indices: 67685636--67685871 Score: 348
Period size: 81 Copynumber: 2.9 Consensus size: 81
67685626 TCACTTGCCC
* * * * *
67685636 ATAGGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATT
1 ATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATT
67685701 TCAGTAATTCTATCCT
66 TCAGTAATTCTATCCT
* *
67685717 ATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCATACAGGGGTATT
1 ATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATT
*
67685782 TCAGTAACTCTATCCT
66 TCAGTAATTCTATCCT
* * *
67685798 ACAAGGGTATTTTAGTAATTCTACCCTAC-AGGTGTATTTTAATAATTCTACCCTACAGGGGTAT
1 ATAGGGGTATTTTAGTAATTCTACCCTACAAGG-GTATTTTAGTAATTCTACCCTACAGGGGTAT
*
67685862 TTCAATAATT
65 TTCAGTAATT
67685872 TTGTAAATCG
Statistics
Matches: 139, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 3 0.02
81 136 0.98
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (81 bp):
ATAGGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATT
TCAGTAATTCTATCCT
Found at i:67685950 original size:27 final size:27
Alignment explanation
Indices: 67685892--67686033 Score: 131
Period size: 27 Copynumber: 5.3 Consensus size: 27
67685882 AGGGTAAAAC
* * * * *
67685892 GGTAATTCTATAAATCGGGGGTACTTC
1 GGTAATTTTATAAACCAGGGGTATTTT
* * *
67685919 AGTAATTTCATAAATCAGGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
* **
67685946 GGTAATTTTACAAACCAATGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
*
67685973 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
* * * **
67686000 GGCAATTTTGTAAACTAAAGGTATTTT
1 GGTAATTTTATAAACCAGGGGTATTTT
67686027 GGTAATT
1 GGTAATT
67686034 CTACCCTACA
Statistics
Matches: 94, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTAATTTTATAAACCAGGGGTATTTT
Found at i:67686052 original size:27 final size:27
Alignment explanation
Indices: 67686019--67686125 Score: 160
Period size: 27 Copynumber: 4.0 Consensus size: 27
67686009 GTAAACTAAA
**
67686019 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
* *
67686046 GGCATTTCAGTAATTCTACCCTACAAG
1 GGTATTTCAGTAATTCTACCCTACAGG
67686073 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCAGTAATTCTACCCTACAGG
* *
67686100 GGTATTTCAGTAATGCTAGCCTACAG
1 GGTATTTCAGTAATTCTACCCTACAG
67686126 ATATGAGATT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (27 bp):
GGTATTTCAGTAATTCTACCCTACAGG
Found at i:67688015 original size:6 final size:6
Alignment explanation
Indices: 67688006--67688109 Score: 81
Period size: 6 Copynumber: 16.8 Consensus size: 6
67687996 AATAAAAATG
*
67688006 AGAATC AGAATC AGAATC AGGAGA-C AGAATC AGAATC AAAATC AGAATC
1 AGAATC AGAATC AGAATC A-GA-ATC AGAATC AGAATC AGAATC AGAATC
* * *
67688055 AGAATT AG-GTGAC AAAATC AGAATC A-ATATC AGGTAA-C AGAATC AGAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGA-ATC A-G-AATC AGAATC AGAATC
67688105 AGAAT
1 AGAAT
67688110 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 8, Indels: 22
0.72 0.07 0.20
Matches are distributed among these distances:
5 5 0.06
6 63 0.80
7 7 0.09
8 3 0.04
9 1 0.01
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:67688049 original size:37 final size:37
Alignment explanation
Indices: 67688008--67688100 Score: 125
Period size: 37 Copynumber: 2.5 Consensus size: 37
67687998 TAAAAATGAG
*
67688008 AATCAGAATCAGAATCAGGAGACAGAATCAGAATCAA
1 AATCAGAATCAGAATCAGGAGACAAAATCAGAATCAA
* *
67688045 AATCAGAATCAGAATTAGGTGACAAAATCAGAATCAA
1 AATCAGAATCAGAATCAGGAGACAAAATCAGAATCAA
*
67688082 TATCAGGTAA-CAGAATCAG
1 AATCA-G-AATCAGAATCAG
67688101 AATCAGAATG
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
37 38 0.78
38 9 0.18
39 2 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.17
Consensus pattern (37 bp):
AATCAGAATCAGAATCAGGAGACAAAATCAGAATCAA
Found at i:67688070 original size:25 final size:25
Alignment explanation
Indices: 67688030--67688109 Score: 94
Period size: 25 Copynumber: 3.2 Consensus size: 25
67688020 AATCAGGAGA
67688030 CAGAATCA-G-AATCAAAATCAGAAT
1 CAGAATCAGGTAA-CAAAATCAGAAT
* *
67688054 CAGAATTAGGTGACAAAATCAGAAT
1 CAGAATCAGGTAACAAAATCAGAAT
*
67688079 CA-ATATCAGGTAACAGAATCAGAAT
1 CAGA-ATCAGGTAACAAAATCAGAAT
67688104 CAGAAT
1 CAGAAT
67688110 GTGAATGCAA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
24 8 0.17
25 37 0.79
26 2 0.04
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (25 bp):
CAGAATCAGGTAACAAAATCAGAAT
Found at i:67688467 original size:22 final size:22
Alignment explanation
Indices: 67688439--67688503 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
67688429 GCAAATATGT
*
67688439 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
67688461 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
67688483 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
67688504 AATAATTGGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:67688954 original size:27 final size:27
Alignment explanation
Indices: 67688920--67689111 Score: 241
Period size: 27 Copynumber: 7.1 Consensus size: 27
67688910 GGTATCTTGG
*
67688920 AATTCTACCTTACAGGGGTATTTC-G-
1 AATTCTACCCTACAGGGGTATTTCAGT
*
67688945 ATATCTCTACCCTACAAGGGTATTTC-GAT
1 A-AT-TCTACCCTACAGGGGTATTTCAG-T
67688974 AATTCTACCCTACA-GGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCAGT
* * *
67689000 AATTCTACCTTACAGGGGTGTTTCGGT
1 AATTCTACCCTACAGGGGTATTTCAGT
*
67689027 AACTCTACCCTACAGGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCAGT
67689054 AATTCTA-CCTGACAGGGGTATTTCAGT
1 AATTCTACCCT-ACAGGGGTATTTCAGT
* *
67689081 AATTCTACCCTACAGAGGTATTTCAAT
1 AATTCTACCCTACAGGGGTATTTCAGT
67689108 AATT
1 AATT
67689112 TTGTAAATCA
Statistics
Matches: 147, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
25 1 0.01
26 28 0.19
27 112 0.76
28 5 0.03
29 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCAGT
Found at i:67689013 original size:80 final size:81
Alignment explanation
Indices: 67688920--67689109 Score: 278
Period size: 80 Copynumber: 2.4 Consensus size: 81
67688910 GGTATCTTGG
*
67688920 AATTCTACCTTACAGGGGTATTTCGATATCTCTACCCTACAAGGGTATTTC-GATAATTCTACCC
1 AATTCTACCTTACAGGGGTATTTCGATAACTCTACCCTACAAGGGTATTTCAG-TAATTCTA-CC
67688984 T-ACA-GGGTATTTCAGT
64 TGACAGGGGTATTTCAGT
* * *
67689000 AATTCTACCTTACAGGGGTGTTTCGGTAACTCTACCCTACAGGGGTATTTCAGTAATTCTACCTG
1 AATTCTACCTTACAGGGGTATTTCGATAACTCTACCCTACAAGGGTATTTCAGTAATTCTACCTG
67689065 ACAGGGGTATTTCAGT
66 ACAGGGGTATTTCAGT
* * *
67689081 AATTCTACCCTACAGAGGTATTTCAATAA
1 AATTCTACCTTACAGGGGTATTTCGATAA
67689110 TTTTGTAAAT
Statistics
Matches: 98, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 58 0.59
81 37 0.38
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (81 bp):
AATTCTACCTTACAGGGGTATTTCGATAACTCTACCCTACAAGGGTATTTCAGTAATTCTACCTG
ACAGGGGTATTTCAGT
Found at i:67689162 original size:27 final size:27
Alignment explanation
Indices: 67689132--67689300 Score: 155
Period size: 27 Copynumber: 6.3 Consensus size: 27
67689122 AAAGTAAAAC
** *
67689132 GGTAATTTTGTAAATCAGGGGTACTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
* * *
67689159 GGTAATTTTA-AAAGT-TGAGGGTGTTTC
1 GGTAATTTTACAAA-TCAG-GGGTATTTT
* *
67689186 AGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
*
67689213 GGTAATTTTACAAA-CTAAGGGTATTTT
1 GGTAATTTTACAAATC-AGGGGTATTTT
*
67689240 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
** * **
67689267 GGTAATTTTGTAAACCAATGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
67689294 GGTAATT
1 GGTAATT
67689301 CTGCCCTACA
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.04
27 108 0.92
28 5 0.04
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACAAATCAGGGGTATTTT
Found at i:67689191 original size:54 final size:54
Alignment explanation
Indices: 67689133--67689275 Score: 180
Period size: 54 Copynumber: 2.6 Consensus size: 54
67689123 AAGTAAAACG
** * * * *
67689133 GTAATTTTGTAAATCAGGGGTACTTTGGTAATTTTA-AAAGTTGAGGGTGTTTCA
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAA-CTAAGGGTATTTCA
* **
67689187 GTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTG
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCA
*
67689241 GTAATTTTACAAACCAGGGGTATTTTGGTAATTTT
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTT
67689276 GTAAACCAAT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 74 0.96
55 3 0.04
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.41
Consensus pattern (54 bp):
GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTCA
Found at i:67689290 original size:54 final size:54
Alignment explanation
Indices: 67689147--67689300 Score: 175
Period size: 54 Copynumber: 2.9 Consensus size: 54
67689137 TTTTGTAAAT
* *** * ** *
67689147 CAGGGGTACTTTGGTAATTTTA-AAAGTTGAGGGTGTTTCAGTAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAA-CCAAGGGTATTTTGGTAATTTCACAAAC
* *
67689201 CAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAAC
** *
67689255 CAGGGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATT
1 CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATT
67689301 CTGCCCTACA
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 84 0.97
55 3 0.03
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTCACAAAC
Found at i:67691901 original size:17 final size:18
Alignment explanation
Indices: 67691869--67691902 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67691859 ACAAGCCAGA
67691869 ATGGGCTATATGGGCCCT
1 ATGGGCTATATGGGCCCT
*
67691887 ATGGGCTGT-TGGGCCC
1 ATGGGCTATATGGGCCC
67691903 ATAATAGGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.12, C:0.24, G:0.38, T:0.26
Consensus pattern (18 bp):
ATGGGCTATATGGGCCCT
Found at i:67692009 original size:29 final size:29
Alignment explanation
Indices: 67691966--67692073 Score: 121
Period size: 29 Copynumber: 3.8 Consensus size: 29
67691956 CATGAATCTG
* **
67691966 AATGTGA-CTGGGCCTAACAGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
67691994 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* * *
67692023 CAGGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGATTTGGGCCTAATGGGCCATATA
* * *
67692052 AATATGA-TTGGTCTTAATGGGC
1 AATGTGATTTGGGCCTAATGGGC
67692074 TAGGTACAGG
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 20 0.29
29 48 0.71
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.29
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:67692545 original size:39 final size:39
Alignment explanation
Indices: 67692501--67692575 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
67692491 GGAAGAAGTA
* *
67692501 TATGGGGATTGTATGGTTGCCTGACAATCGTGGATCTAT
1 TATGGGGATCGCATGGTTGCCTGACAATCGTGGATCTAT
67692540 TATGGGGATCGCATGGTTGCCTGACAATCGTGGATC
1 TATGGGGATCGCATGGTTGCCTGACAATCGTGGATC
67692576 CACCTACGAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.32
Consensus pattern (39 bp):
TATGGGGATCGCATGGTTGCCTGACAATCGTGGATCTAT
Found at i:67696512 original size:29 final size:28
Alignment explanation
Indices: 67696457--67696571 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 28
67696447 GTGAGCAAGA
* * *
67696457 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
67696485 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
67696514 ATATACAA-GTGATTTGGGCCTAATGGGCC
1 ATATA-AATGTGA-TTGGGCCTAATGGGCC
* * * *
67696543 ATATGAATATGATTGGGCTTACTGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
67696571 A
1 A
67696572 GATACAGGTA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 28 0.36
29 47 0.61
30 2 0.03
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:67700601 original size:29 final size:29
Alignment explanation
Indices: 67700559--67700643 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 29
67700549 GCATGACTAT
* *
67700559 GAATGTGATTTGGGCTTAATGGGCCATAC
1 GAATGTGGTTTGGGCCTAATGGGCCATAC
*
67700588 GAATGTGGTTTGGGCCTAATGGGCCATAT
1 GAATGTGGTTTGGGCCTAATGGGCCATAC
* * *
67700617 GAATG-AGATTGGGCCTAGTGGGCCATA
1 GAATGTGGTTTGGGCCTAATGGGCCATA
67700644 TGCATGTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 19 0.38
29 31 0.62
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (29 bp):
GAATGTGGTTTGGGCCTAATGGGCCATAC
Found at i:67707130 original size:29 final size:30
Alignment explanation
Indices: 67707083--67707142 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
67707073 CAAAGATCTA
* *
67707083 AAAGCTGAAATCCCTTGTTCTTCCTCTCTT
1 AAAGCCGAAATCCATTGTTCTTCCTCTCTT
67707113 AAAGCCGAAA-CCATTGTTCTTCCTCTCTT
1 AAAGCCGAAATCCATTGTTCTTCCTCTCTT
67707142 A
1 A
67707143 CTTTGTGCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.23, C:0.30, G:0.10, T:0.37
Consensus pattern (30 bp):
AAAGCCGAAATCCATTGTTCTTCCTCTCTT
Found at i:67708136 original size:28 final size:29
Alignment explanation
Indices: 67708054--67708143 Score: 112
Period size: 29 Copynumber: 3.1 Consensus size: 29
67708044 AAAGCATGAC
* * *
67708054 TATGAATGTGATTTAGGCCTAATAGGCCA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
*
67708083 TACGAATGTA-ATTTGGGCCTAATGGGCCA
1 TATGAATG-AGATTTGGGCCTAATGGGCCA
*
67708112 TATGAATGAGA-TTGGGCCTAGTGGGCCA
1 TATGAATGAGATTTGGGCCTAATGGGCCA
67708140 TATG
1 TATG
67708144 CATGTATGTA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
28 21 0.40
29 32 0.60
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (29 bp):
TATGAATGAGATTTGGGCCTAATGGGCCA
Found at i:67709194 original size:17 final size:18
Alignment explanation
Indices: 67709161--67709194 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
67709151 TCTTTTTAAG
67709161 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
67709179 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
67709195 TTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:67710385 original size:26 final size:26
Alignment explanation
Indices: 67710351--67710431 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
67710341 AACACACCAA
* *
67710351 TATCCCAGCAATGCTGCCAGTAACAG
1 TATCACAGCAAAGCTGCCAGTAACAG
** * *
67710377 TATTGCAGCAAAGCTGCTAGTAATAG
1 TATCACAGCAAAGCTGCCAGTAACAG
*
67710403 TATCACAGCAAAGCTGTCAGTAACAG
1 TATCACAGCAAAGCTGCCAGTAACAG
67710429 TAT
1 TAT
67710432 ATGTGGCAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (26 bp):
TATCACAGCAAAGCTGCCAGTAACAG
Found at i:67710621 original size:26 final size:28
Alignment explanation
Indices: 67710584--67710637 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
67710574 ATCATAGCAC
*
67710584 AAATCAGTCA-TTTACCCTCGAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
*
67710611 AAAT-AGTCATTTTACCCTATAGGGGTA
1 AAATCAGTCATTTTACCCTAGAGGGGTA
67710638 TTTTAGTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 19 0.79
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (28 bp):
AAATCAGTCATTTTACCCTAGAGGGGTA
Found at i:67714241 original size:26 final size:26
Alignment explanation
Indices: 67714212--67714272 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
67714202 AGCCTGCCAC
*
67714212 TAACAGTATCGCAGTAAAGCTACC-G
1 TAACAGTATCGCAGCAAAGCTACCAG
*
67714237 ATAACAGTATCGCAGCAAAGCTGCCAG
1 -TAACAGTATCGCAGCAAAGCTACCAG
67714264 TAACAGTAT
1 TAACAGTAT
67714273 ATGTGGCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 31 0.97
27 1 0.03
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (26 bp):
TAACAGTATCGCAGCAAAGCTACCAG
Found at i:67714290 original size:27 final size:27
Alignment explanation
Indices: 67714251--67714318 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
67714241 CAGTATCGCA
** *
67714251 GCAAAGCTGCCAGTAACAGTATATGTG
1 GCAAAGCCACCAGTAACAGTATATATG
* *
67714278 GCAAAGCCACCAGAAATAGTATATATG
1 GCAAAGCCACCAGTAACAGTATATATG
*
67714305 GCGAAGCCACCAGT
1 GCAAAGCCACCAGT
67714319 TTAATACAGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTATATATG
Found at i:67718608 original size:26 final size:26
Alignment explanation
Indices: 67718572--67718652 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
67718562 AAGACACCAA
* * *
67718572 TATCGCAGCAAGGTTGCTAGTAAAAG
1 TATCGCAGCAAGGCTACCAGTAAAAG
* *
67718598 TATCGCAGCAAAGCTACCAGTAACAG
1 TATCGCAGCAAGGCTACCAGTAAAAG
* *
67718624 TATCGTAGCAAGGCTACCAGTAACAG
1 TATCGCAGCAAGGCTACCAGTAAAAG
67718650 TAT
1 TAT
67718653 ATGTGGCAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (26 bp):
TATCGCAGCAAGGCTACCAGTAAAAG
Found at i:67718669 original size:27 final size:27
Alignment explanation
Indices: 67718605--67718694 Score: 101
Period size: 27 Copynumber: 3.4 Consensus size: 27
67718595 AAGTATCGCA
* * *
67718605 GCAAAGCTACCAGTAACAGTAT-CGTA
1 GCAAAGCCACCAGTAACAGTATATGTG
* *
67718631 GCAAGGCTACCAGTAACAGTATATGTG
1 GCAAAGCCACCAGTAACAGTATATGTG
* *
67718658 GCAAAGCCACCAGAAATAGTATATGTG
1 GCAAAGCCACCAGTAACAGTATATGTG
*
67718685 GCGAAGCCAC
1 GCAAAGCCAC
67718695 TTGTATGCTA
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 21 0.38
27 34 0.62
ACGTcount: A:0.37, C:0.22, G:0.23, T:0.18
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTATATGTG
Found at i:67723415 original size:30 final size:30
Alignment explanation
Indices: 67723380--67723440 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
67723370 TCCTTAACTC
67723380 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
67723410 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
67723440 A
1 A
67723441 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:67727068 original size:27 final size:26
Alignment explanation
Indices: 67727051--67727120 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
67727041 ATATTAAGTC
67727051 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
67727078 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
67727106 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
67727121 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:67727114 original size:28 final size:28
Alignment explanation
Indices: 67727051--67727148 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
67727041 ATATTAAGTC
*
67727051 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
67727078 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
67727106 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
67727135 CGCACACTTAGTGC
1 CGCACACTTAGTGC
67727149 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:67727612 original size:12 final size:12
Alignment explanation
Indices: 67727595--67727620 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67727585 TGGGCATACT
67727595 TATGTATATATA
1 TATGTATATATA
67727607 TATGTATATATA
1 TATGTATATATA
67727619 TA
1 TA
67727621 CTTTGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:67729182 original size:12 final size:12
Alignment explanation
Indices: 67729165--67729190 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
67729155 AACATCACCA
67729165 AAATAAATGTCC
1 AAATAAATGTCC
67729177 AAATAAATGTCC
1 AAATAAATGTCC
67729189 AA
1 AA
67729191 TGTCCATTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (12 bp):
AAATAAATGTCC
Found at i:67733896 original size:138 final size:138
Alignment explanation
Indices: 67733744--67734063 Score: 498
Period size: 138 Copynumber: 2.3 Consensus size: 138
67733734 TATAATTGTT
* * * * *
67733744 TATATACAAATAATAATTTGCATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATA
1 TATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTAAATTCTTTCCAAAAGAAAA
* * * * *
67733809 TTAATTTTCATGTCTTTTATATTTTGACCA-AAATTAATTAATATAATTTTTTATATTAATAAAT
66 GTAATTTCCATGTCATTTATATTTTGA-CAGAAATTAATTAATATAACTGTTTATATTAATAAAT
67733873 TCAATAAAA
130 TCAATAAAA
*
67733882 TATATACAATTAATATTTTGTATGAATCAAATTCATATATTAACTAAATTCTTTCCAAAAGAAAA
1 TATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTAAATTCTTTCCAAAAGAAAA
*
67733947 GTAATTTCCATGTCATTTATATTTTGACAGAAATTAATTAATATAACTGTTTATATTAATAGATT
66 GTAATTTCCATGTCATTTATATTTTGACAGAAATTAATTAATATAACTGTTTATATTAATAAATT
**
67734012 TGATAAAA
131 CAATAAAA
67734020 TATATACAATTAATATTTTGTATGAATCAAATTCATATATTAAT
1 TATATACAATTAATATTTTGTATGAATCAAATTCATATATTAAT
67734064 CTATGTTTTC
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
137 2 0.01
138 164 0.99
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.43
Consensus pattern (138 bp):
TATATACAATTAATATTTTGTATGAATCAAATTCATATATTAATTAAATTCTTTCCAAAAGAAAA
GTAATTTCCATGTCATTTATATTTTGACAGAAATTAATTAATATAACTGTTTATATTAATAAATT
CAATAAAA
Found at i:67735767 original size:46 final size:46
Alignment explanation
Indices: 67735700--67735877 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
67735690 TGTAATCCGC
*
67735700 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGATGTTAGCAT
* * * * *
67735746 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTTAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG-TTAG-CAT
*** * ** *
67735794 ATTTCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
*
67735839 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG
67735878 CCCAAATATC
Statistics
Matches: 103, Mismatches: 25, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
45 6 0.06
46 64 0.62
47 29 0.28
48 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTAGCAT
Found at i:67735815 original size:93 final size:93
Alignment explanation
Indices: 67735707--67735879 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
67735697 CGCCCATAAG
**
67735707 CGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
*
67735771 AACAAGTTCGGATGCCTAGTTATATTTCA
65 AACAAGCTCGGATGCCTAGTTATATTTCA
*
67735800 CGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
67735865 ACGAGCTCGGATGCC
66 ACAAGCTCGGATGCC
67735880 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGCTCGGATGCCTAGTTATATTTCA
Done.