Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 200 of 345
Found at i:67761199 original size:30 final size:30
Alignment explanation
Indices: 67761163--67761223 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
67761153 TCCTTAACTC
67761163 AAACTTTTGA-AAATTTACAATTTTGCCCCT
1 AAACTTTT-ACAAATTTACAATTTTGCCCCT
* *
67761193 AAACTTTTACATATTTACACTTTTGCCCCT
1 AAACTTTTACAAATTTACAATTTTGCCCCT
67761223 A
1 A
67761224 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 27 0.96
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTACAAATTTACAATTTTGCCCCT
Found at i:67766831 original size:46 final size:46
Alignment explanation
Indices: 67766775--67766947 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
67766765 TGGTTGAGCA
* *
67766775 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
67766821 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
67766866 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
67766914 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
67766948 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 60 0.56
47 29 0.27
48 4 0.04
50 6 0.06
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:67766931 original size:93 final size:93
Alignment explanation
Indices: 67766772--67766942 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
67766762 GGATGGTTGA
* * *
67766772 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
67766837 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
67766865 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
67766930 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
67766943 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:67770660 original size:44 final size:46
Alignment explanation
Indices: 67770594--67770725 Score: 173
Period size: 44 Copynumber: 2.9 Consensus size: 46
67770584 TATATATACA
* *
67770594 CATCTCATACA-ATTCTCACATTAGCCATTTGGCTTTACCACA-ATC
1 CATCTCATACACATT-TCGCATTAGCCATTCGGCTTTACCACATATC
* *
67770639 CAT-TCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
67770684 TATCTCATACACATTTCGCATTAG-CATTCGGCCTTACCACAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACAT
67770726 TATATAAATG
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
44 31 0.41
45 26 0.34
46 19 0.25
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:67770783 original size:46 final size:46
Alignment explanation
Indices: 67770733--67770907 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
67770723 CATTATATAA
* * *
67770733 ATGTTCACATTCATCAAATTGGCCATTCGCCTTATCTCATATATGC
1 ATGTTCACATTCATCACATTGGCCATTCGCCTTATCTCACATACGC
* *
67770779 ATGTTCACATTCAT-ACATTGGGCCATTCGACTTATCACACATACGC
1 ATGTTCACATTCATCACATT-GGCCATTCGCCTTATCTCACATACGC
67770825 ATGTTCTCACATTCAATCACATTGG-CATTCGGGCC-TA--TCACATACGC
1 ATG-T-TCACATTC-ATCACATTGGCCATTC--GCCTTATCTCACATACGC
*
67770872 ATGTTCACATTCATCACATTGGCCATTCGCTTTATC
1 ATGTTCACATTCATCACATTGGCCATTCGCCTTATC
67770908 AATGCATATA
Statistics
Matches: 110, Mismatches: 8, Indels: 22
0.79 0.06 0.16
Matches are distributed among these distances:
43 2 0.02
44 12 0.11
45 17 0.15
46 40 0.36
47 13 0.12
48 13 0.12
49 6 0.05
50 7 0.06
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (46 bp):
ATGTTCACATTCATCACATTGGCCATTCGCCTTATCTCACATACGC
Found at i:67796657 original size:93 final size:93
Alignment explanation
Indices: 67796545--67796716 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
67796535 CGCCCATAAG
* *
67796545 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67796610 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
67796638 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
67796703 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
67796717 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67796713 original size:46 final size:46
Alignment explanation
Indices: 67796538--67796713 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
67796528 TGTAACCCGC
* * *
67796538 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
67796584 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
67796634 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67796677 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
67796714 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67804198 original size:93 final size:93
Alignment explanation
Indices: 67804086--67804257 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
67804076 CCGCCATAAG
* *
67804086 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
67804151 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
67804179 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
67804244 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
67804258 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:67804254 original size:46 final size:46
Alignment explanation
Indices: 67804079--67804254 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
67804069 ATGTAACCCG
* * *
67804079 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
67804125 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
67804175 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
67804218 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
67804255 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.57
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:67806009 original size:40 final size:40
Alignment explanation
Indices: 67805950--67806551 Score: 817
Period size: 40 Copynumber: 15.1 Consensus size: 40
67805940 TGAGAGTTAT
67805950 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * *
67805990 ATGTATCCGGGCTACGTCCCGAACAGCATTCGTGCTAATG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* **
67806030 ATATATCTGGGCTAAGTTACGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
67806070 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAATG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
67806110 ATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
67806150 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAATG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
67806190 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
67806230 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
67806270 ATGTATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
67806310 ATATATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
67806350 ATATATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * **
67806390 ATATATCCGGGCTAAATCCCGAAGGGCATTCGTGCCGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * * * * **
67806430 TTATATCTGAGCTAAATCCTGAAGGGCATTCGTGCCGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * * * * *
67806470 TTATATCCGGGCTAAATCCCGAAGGGTATTCGTGCCAATG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* ** * * *
67806510 TTATATCTTGGCTAAGTCCCGAAGGGTATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
67806550 AT
1 AT
67806552 GTATTTTCGG
Statistics
Matches: 509, Mismatches: 53, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 509 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:67810835 original size:22 final size:22
Alignment explanation
Indices: 67810808--67810882 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
67810798 CATGCGTATG
67810808 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
67810830 TGTGATGAATG-TGAACAT-GCGCATG
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
67810855 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
67810877 TGTGAT
1 TGTGAT
67810883 GAATTTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 13 0.32
23 10 0.25
24 10 0.25
25 7 0.17
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:67810835 original size:47 final size:47
Alignment explanation
Indices: 67810782--67811117 Score: 501
Period size: 47 Copynumber: 7.1 Consensus size: 47
67810772 TTAGGATTTT
*
67810782 ATGTGATTAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
67810829 ATGTGATGAATGTGAACATGCGCATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* ** * *
67810876 ATGTGATGAATTTGAACATGTATATATATGCGTGATAAAGCCGAATGGCCA
1 ATGTGATGAATGTGAACATG----CGTATGTGTGATAAGGCCGAATGGCCA
67810927 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
67810974 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
67811021 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
67811068 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
67811115 ATG
1 ATG
67811118 CGAAATGTGT
Statistics
Matches: 265, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 224 0.85
51 41 0.15
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:67810954 original size:23 final size:23
Alignment explanation
Indices: 67810927--67811001 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
67810917 CGAATGGCCA
67810927 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
67810950 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
67810974 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
67810997 ATGTG
1 ATGTG
67811002 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:67810958 original size:145 final size:141
Alignment explanation
Indices: 67810782--67811117 Score: 537
Period size: 145 Copynumber: 2.4 Consensus size: 141
67810772 TTAGGATTTT
*
67810782 ATGTGATTAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* * *
67810847 TGCGCATGTGTGATAAGGCCGAATGGCCAATGTGATGAATTTGAACATGTATATATATGCGTGAT
66 TGCGCATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG--CATATAT--GAGAT
67810912 AAAGCCGAATGGCCA
127 AAAGCCGAATGGCCA
67810927 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
* *
67810992 TGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGG
66 TGCGCATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAAG
67811057 CCGAATGGCCA
131 CCGAATGGCCA
** * * *
67811068 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTAATG
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATG
67811118 CGAAATGTGT
Statistics
Matches: 180, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
141 63 0.35
143 6 0.03
145 111 0.62
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.26
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
TGCGCATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAAG
CCGAATGGCCA
Found at i:67811227 original size:46 final size:46
Alignment explanation
Indices: 67811091--67811227 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
67811081 GAACATGTAT
* *
67811091 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
67811137 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * * *
67811183 ATCTGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
67811228 TGTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:67812174 original size:3 final size:3
Alignment explanation
Indices: 67812166--67812191 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
67812156 CTTATTTCAA
67812166 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
67812192 ATTTTACTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:67825225 original size:6 final size:6
Alignment explanation
Indices: 67825214--67825242 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
67825204 CTATTCAAGA
67825214 ATGCAT ATGCAT ATGCAT ATGCAT ATGCA
1 ATGCAT ATGCAT ATGCAT ATGCAT ATGCA
67825243 AAGAGTTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (6 bp):
ATGCAT
Found at i:67825266 original size:20 final size:20
Alignment explanation
Indices: 67825241--67825286 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
67825231 TATGCATATG
67825241 CAAAGAGTTGTGACCGATGT
1 CAAAGAGTTGTGACCGATGT
67825261 CAAAGAGTTGTGACCGATGT
1 CAAAGAGTTGTGACCGATGT
67825281 CAAAGA
1 CAAAGA
67825287 TCATTGAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22
Consensus pattern (20 bp):
CAAAGAGTTGTGACCGATGT
Found at i:67826653 original size:20 final size:20
Alignment explanation
Indices: 67826628--67826667 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
67826618 TTGATAATAC
67826628 AATTATAATCT-TTAATATAT
1 AATTAT-ATCTATTAATATAT
*
67826648 AATTATATCTATTTATATAT
1 AATTATATCTATTAATATAT
67826668 TAATCTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (20 bp):
AATTATATCTATTAATATAT
Found at i:67838503 original size:50 final size:50
Alignment explanation
Indices: 67838299--67838519 Score: 194
Period size: 50 Copynumber: 4.4 Consensus size: 50
67838289 ACGCATGGTT
* *
67838299 GCCTGCACTTACTACCACACATGCGACCTAA-AATCCTG-TACACGTAGTA
1 GCCTGCACTTAGTACTACACATGCGACCTAACAAT-CTGATACACGTAGTA
* *** *
67838348 GCCTGCACTTAGTATTACACACATGACCTAACCATCTGATACACGTAGTA
1 GCCTGCACTTAGTACTACACATGCGACCTAACAATCTGATACACGTAGTA
* * * * * * * * ** * * ** *
67838398 GCCTACATTTTGTACTACAAACGTGATCGAAGCTGTCGGGTATGCATAGTA
1 GCCTGCACTTAGTACTACACATGCGACCTAA-CAATCTGATACACGTAGTA
*
67838449 GCCTGCACTTAGTACTACACGTGCGACCTAACAATCTGATACACGTAGTA
1 GCCTGCACTTAGTACTACACATGCGACCTAACAATCTGATACACGTAGTA
*
67838499 GCCTGCACTTAGTAGTACACA
1 GCCTGCACTTAGTACTACACA
67838520 CGTGACTAAA
Statistics
Matches: 129, Mismatches: 40, Indels: 5
0.74 0.23 0.03
Matches are distributed among these distances:
49 28 0.22
50 67 0.52
51 34 0.26
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
GCCTGCACTTAGTACTACACATGCGACCTAACAATCTGATACACGTAGTA
Found at i:67838523 original size:101 final size:101
Alignment explanation
Indices: 67838343--67838524 Score: 265
Period size: 101 Copynumber: 1.8 Consensus size: 101
67838333 CCTGTACACG
* * * *
67838343 TAGTAGCCTGCACTTAGTATTACACACATGACCTAACCATCTGATACACGTAGTAGCCTACATTT
1 TAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGCCTACACTT
*
67838408 TGTACTACAAACGTGATCGAAGCTGTCGGGTATGCA
66 AGTACTACAAACGTGATCGAAGCTGTCGGGTATGCA
*** *
67838444 TAGTAGCCTGCACTTAGTACTACACGTGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGCCTACACTT
* *
67838509 AGTAGTACACACGTGA
66 AGTACTACAAACGTGA
67838525 CTAAAAATCG
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGCCTACACTT
AGTACTACAAACGTGATCGAAGCTGTCGGGTATGCA
Found at i:67838554 original size:52 final size:50
Alignment explanation
Indices: 67838299--67838571 Score: 138
Period size: 50 Copynumber: 5.4 Consensus size: 50
67838289 ACGCATGGTT
* * * * *
67838299 GCCTGCACTTACTACCACACATGCGACCT-AAAATCCTG-TACACGTAGTA
1 GCCTGCACTTAGTACTACACACGCGACCTAAAAAT-CTGAAACACATAGTA
* ** ** * *
67838348 GCCTGCACTTAGTATTACACACATGACCTAACCATCTGATACACGTAGTA
1 GCCTGCACTTAGTACTACACACGCGACCTAAAAATCTGAAACACATAGTA
* * * * * * * *** * ** **
67838398 GCCTACATTTTGTACTACAAACGTGATCGAAGCTGTCGGGTATGCATAGTA
1 GCCTGCACTTAGTACTACACACGCGACCTAA-AAATCTGAAACACATAGTA
** * * *
67838449 GCCTGCACTTAGTACTACACGTGCGACCTAACAATCTGATACACGTAGTA
1 GCCTGCACTTAGTACTACACACGCGACCTAAAAATCTGAAACACATAGTA
* * *
67838499 GCCTGCACTTAGTAGTACACACGTGA-CTAAAAATCGTCTTAAACACATAGTA
1 GCCTGCACTTAGTACTACACACGCGACCTAAAAA---TCTGAAACACATAGTA
* * *
67838551 GCCTGTACATAATACTACACA
1 GCCTGCACTTAGTACTACACA
67838572 TGTGTTCTCA
Statistics
Matches: 167, Mismatches: 51, Indels: 9
0.74 0.22 0.04
Matches are distributed among these distances:
49 32 0.19
50 71 0.43
51 34 0.20
52 30 0.18
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (50 bp):
GCCTGCACTTAGTACTACACACGCGACCTAAAAATCTGAAACACATAGTA
Found at i:67844750 original size:105 final size:105
Alignment explanation
Indices: 67844547--67844763 Score: 294
Period size: 105 Copynumber: 2.1 Consensus size: 105
67844537 CTAGAGCACA
*
67844547 GGCGTGTGACTTGGTCGTGTGTCTTCAATTTGTTCTTAGGTGACAAACAAAGAGTTACACGGGGT
1 GGCGTGTGACTTGCTCGTGTGTCTTCAATTTGTTCTTAGGTGACAAACAAAGAGTTACACGGGGT
* ** * *
67844612 CGGGACACGGGCGTGTGTGACTACACAGGCTGCCCACACG
66 CGGGACACGAGCGTGTGACACCACACAGCCTGCCCACACG
* * *
67844652 GGCGTGTGACTTCGCT-GTGTGTCTTCACTTTGTTCTTGGGTGACAAACAGAGAGTTACACGGGG
1 GGCGTGTGACTT-GCTCGTGTGTCTTCAATTTGTTCTTAGGTGACAAACAAAGAGTTACACGGGG
* *
67844716 TTGGGACACGAGCGTGTGACACCACAC-GACCTGCCCACATG
65 TCGGGACACGAGCGTGTGACACCACACAG-CCTGCCCACACG
*
67844757 GTCGTGT
1 GGCGTGT
67844764 CCCATATCCA
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
104 1 0.01
105 95 0.97
106 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.32, T:0.25
Consensus pattern (105 bp):
GGCGTGTGACTTGCTCGTGTGTCTTCAATTTGTTCTTAGGTGACAAACAAAGAGTTACACGGGGT
CGGGACACGAGCGTGTGACACCACACAGCCTGCCCACACG
Found at i:67852633 original size:42 final size:43
Alignment explanation
Indices: 67852556--67852682 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
67852546 TCTCAGATGT
* * * *
67852556 GGTCGTACATGTAATCAAATATCGATGCCACTGTCCCATACAG
1 GGTCTTACATGAAATCAAATATCGATGCCAATGTCCCAGACAG
* *
67852599 GGTCTTACATGAAATCATATAT-GATGCCAATGTCCCAGACAT
1 GGTCTTACATGAAATCAAATATCGATGCCAATGTCCCAGACAG
* * *
67852641 GGTTTTACACAT-AAATCACAA-ATCGATGCCGACGTCCCAGAC
1 GGTCTT--ACATGAAATCA-AATATCGATGCCAATGTCCCAGAC
67852683 GAGAACTAGA
Statistics
Matches: 70, Mismatches: 10, Indels: 7
0.80 0.11 0.08
Matches are distributed among these distances:
42 22 0.31
43 27 0.39
44 21 0.30
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCAATGTCCCAGACAG
Found at i:67856287 original size:42 final size:43
Alignment explanation
Indices: 67856204--67856320 Score: 128
Period size: 42 Copynumber: 2.7 Consensus size: 43
67856194 TCTCAGTCGT
* * *
67856204 GGTCTTACATGTAATCAAATATCGATGCCACTGCCCCAGACAC
1 GGTCTTACAAGAAATCAAATATCGATGCCAATGCCCCAGACAC
* * * *
67856247 GGTCTTACAAGAAATCATATA-CGATGCCAATGTCCTAGACAT
1 GGTCTTACAAGAAATCAAATATCGATGCCAATGCCCCAGACAC
* * *
67856289 GGTCTTACACGTAAATGAAAAATCGATGCCAA
1 GGTCTTACAAG-AAATCAAATATCGATGCCAA
67856321 CATCCTAGAC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 27 0.44
43 25 0.41
44 9 0.15
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (43 bp):
GGTCTTACAAGAAATCAAATATCGATGCCAATGCCCCAGACAC
Found at i:67859893 original size:45 final size:45
Alignment explanation
Indices: 67859788--67860009 Score: 228
Period size: 45 Copynumber: 5.0 Consensus size: 45
67859778 AAGTTATCTC
*
67859788 ATATCGATGCC-ACTATCCCAGACAG-GGTCTT--ACATAAATCA-A-
1 ATATCGATGCCAAC-GTCCCAGAC-GTGGTCTTACACATAAA-CACAT
* * * * * *
67859830 ATA-CGATGCCGATGTCCCAGACATGGTCTTACTCATAACCATAT
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACATAAACACAT
67859874 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGA-AAACACAT
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACAC-ATAAACACAT
* * *
67859919 ATATCGATGCCAACGTACCAGACGCGGTCTTACACAAAAACACAT
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACATAAACACAT
* *
67859964 ATATCGATGCCAATGTTCCAGACGTGGTCTTACACGA-AAACACAT
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACAC-ATAAACACAT
67860009 A
1 A
67860010 GCATAATCCT
Statistics
Matches: 154, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
41 21 0.14
42 6 0.04
43 6 0.04
44 4 0.03
45 115 0.75
46 2 0.01
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (45 bp):
ATATCGATGCCAACGTCCCAGACGTGGTCTTACACATAAACACAT
Found at i:67859969 original size:90 final size:89
Alignment explanation
Indices: 67859788--67860009 Score: 256
Period size: 90 Copynumber: 2.5 Consensus size: 89
67859778 AAGTTATCTC
* * * * * *
67859788 ATATCGATGCC-ACTATCCCAGACAG-GGTCTTACA-TAAATCA-A-ATACGATGCCGATGTCCC
1 ATATCGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAAACACATATACGATGCCAACGTACC
* * * * *
67859848 AGACATGGTCTTACTCATAACCATAT
64 AGACACGGTCTTACACAAAAACACAT
67859874 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATATCGATGCCAACGTACCA
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATA-CGATGCCAACGTACCA
*
67859939 GACGCGGTCTTACACAAAAACACAT
65 GACACGGTCTTACACAAAAACACAT
* *
67859964 ATATCGATGCCAATGTTCCAGACGTGGTCTTACACGAAAACACATA
1 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATA
67860010 GCATAATCCT
Statistics
Matches: 116, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
85 1 0.01
86 28 0.24
87 7 0.06
88 1 0.01
89 3 0.03
90 76 0.66
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (89 bp):
ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACATATACGATGCCAACGTACCAG
ACACGGTCTTACACAAAAACACAT
Found at i:67860581 original size:15 final size:15
Alignment explanation
Indices: 67860558--67860588 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
67860548 TCAAAAATTC
67860558 CAATACAAAACATAT
1 CAATACAAAACATAT
*
67860573 CAATCCAAAACATAT
1 CAATACAAAACATAT
67860588 C
1 C
67860589 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:67861120 original size:14 final size:14
Alignment explanation
Indices: 67861094--67861131 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
67861084 AAAATTAAAG
*
67861094 CACAAA-AATTTCA
1 CACAAATAAATTCA
67861107 CACAAATAAATTCA
1 CACAAATAAATTCA
67861121 CACATAATAAA
1 CACA-AATAAA
67861132 CATAGAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 6 0.27
14 10 0.45
15 6 0.27
ACGTcount: A:0.58, C:0.21, G:0.00, T:0.21
Consensus pattern (14 bp):
CACAAATAAATTCA
Found at i:67866392 original size:53 final size:53
Alignment explanation
Indices: 67866198--67866404 Score: 171
Period size: 53 Copynumber: 3.8 Consensus size: 53
67866188 ATTAGGGTTT
* * * ** * * *
67866198 AAGGATACCAAGTAATACCACGCCAAGGCATGGCATTGGTAAGTTTTACAAGGA
1 AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGTAAG-TTCACAAGGC
* * * * * * * *
67866252 AAGGAAATCATGTAAGACCATGTCAAAACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGT-AAGTTC-ACAAGGC
* * ** *
67866307 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGTAAGTTCACAAGGC
* * *
67866360 AAGGATACCACGTAAGACCATGTCAAAACATGGAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGTAAGTT
67866405 TAAAAAGGAA
Statistics
Matches: 116, Mismatches: 35, Indels: 5
0.74 0.22 0.03
Matches are distributed among these distances:
53 43 0.37
54 35 0.30
55 38 0.33
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAAACATGGCAATGGTAAGTTCACAAGGC
Found at i:67868457 original size:30 final size:30
Alignment explanation
Indices: 67868421--67868511 Score: 164
Period size: 30 Copynumber: 3.0 Consensus size: 30
67868411 GTAAGATCAC
67868421 AGTGACTGAATATGAACGTGAATTTGTCAG
1 AGTGACTGAATATGAACGTGAATTTGTCAG
* *
67868451 AGTGACTGAATATGAACGTGAATTTATTAG
1 AGTGACTGAATATGAACGTGAATTTGTCAG
67868481 AGTGACTGAATATGAACGTGAATTTGTCAG
1 AGTGACTGAATATGAACGTGAATTTGTCAG
67868511 A
1 A
67868512 CTTAGTAATT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 57 1.00
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (30 bp):
AGTGACTGAATATGAACGTGAATTTGTCAG
Found at i:67873475 original size:53 final size:53
Alignment explanation
Indices: 67873399--67873503 Score: 147
Period size: 53 Copynumber: 2.0 Consensus size: 53
67873389 ATAAACTATT
* * * *
67873399 ATAAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTCAGTTC
* * *
67873452 ATAAGGCAAGGATACTACGTAAGACCATGTCAAGACATGGCAATGGTCAGTT
1 ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTCAGTT
67873504 TAAAAAGGAA
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACGTAAGACCATGCCAAGACATGGCAATGGTCAGTTC
Found at i:67875577 original size:42 final size:43
Alignment explanation
Indices: 67875475--67875615 Score: 160
Period size: 43 Copynumber: 3.3 Consensus size: 43
67875465 AGCTCGTACA
* * * * *
67875475 ATGCTAATGTCCCAAACATGGTCTTACATGTAATCAAATATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
67875518 ATGCCACTGTCCCAGACAAGGTCTTACACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
67875560 ATGCCAATGTCCTAGACATGGTCTTACACATAAATCACAA-ATCG
1 ATGCCAATGTCCCAGACATGGTCTTACAC-GAAATCA-AATATCG
*
67875604 ATGCCAACGTCC
1 ATGCCAATGTCC
67875616 TAAATGTGAT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
42 27 0.33
43 41 0.49
44 15 0.18
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:67875629 original size:44 final size:46
Alignment explanation
Indices: 67875490--67875637 Score: 124
Period size: 43 Copynumber: 3.4 Consensus size: 46
67875480 AATGTCCCAA
* * *
67875490 ACATGGTCTTACATG-T-AAT--CAAATATCAATGCC-ACTGTCCCAG
1 ACATGGTCTTACACGATAAATCACAAATA-CGATGCCAAC-GTCCTAG
* *
67875533 ACAAGGTCTTACACG--AAAT--CAAATACGATGCCAATGTCCTAG
1 ACATGGTCTTACACGATAAATCACAAATACGATGCCAACGTCCTAG
67875575 ACATGGTCTTACAC-ATAAATCACAAAT-CGATGCCAACGTCCTA-
1 ACATGGTCTTACACGATAAATCACAAATACGATGCCAACGTCCTAG
67875618 A-ATGTGATCTTACACGATAA
1 ACATG-G-TCTTACACGATAA
67875638 CACACATCGA
Statistics
Matches: 89, Mismatches: 7, Indels: 16
0.79 0.06 0.14
Matches are distributed among these distances:
42 28 0.31
43 29 0.33
44 23 0.26
45 9 0.10
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.25
Consensus pattern (46 bp):
ACATGGTCTTACACGATAAATCACAAATACGATGCCAACGTCCTAG
Found at i:67879027 original size:28 final size:29
Alignment explanation
Indices: 67878972--67879098 Score: 150
Period size: 28 Copynumber: 4.3 Consensus size: 29
67878962 AAGTCTACAT
* * *
67878972 ACATGCATATGGCCTACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
67879000 TCATTCATATGGCCCATTA-GCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
67879028 ATATTCATATGGCTGCCCATTAGGCCCAAATC
1 ACATTCATAT-G--GCCCATTAGGCCCAAATC
* *
67879060 ACATTCATACGACCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
67879089 ACATTCATAT
1 ACATTCATAT
67879099 ACATGTTTTC
Statistics
Matches: 84, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
27 4 0.05
28 27 0.32
29 27 0.32
31 9 0.11
32 17 0.20
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:67879085 original size:29 final size:28
Alignment explanation
Indices: 67878989--67879097 Score: 123
Period size: 29 Copynumber: 3.8 Consensus size: 28
67878979 TATGGCCTAC
* *
67878989 TAGGCCC-AATCTCATTCATATGGCCCAT
1 TAGGCCCAAATCACATTCATA-CGCCCAT
*
67879017 TA-GCCCAAATCATATTCATATGGCTGCCCAT
1 TAGGCCCAAATCACATTCATA---C-GCCCAT
67879048 TAGGCCCAAATCACATTCATACGACCCAT
1 TAGGCCCAAATCACATTCATACG-CCCAT
67879077 TAGGCCCAAATCACATTCATA
1 TAGGCCCAAATCACATTCATA
67879098 TACATGTTTT
Statistics
Matches: 70, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
27 4 0.06
28 14 0.20
29 27 0.39
31 8 0.11
32 17 0.24
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.26
Consensus pattern (28 bp):
TAGGCCCAAATCACATTCATACGCCCAT
Found at i:67890433 original size:20 final size:20
Alignment explanation
Indices: 67890401--67890439 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
67890391 ATGAAATAGA
67890401 TTTTTAAAAAATTA-AACAC
1 TTTTTAAAAAATTATAACAC
*
67890420 TTTTTACAACAATTATAACA
1 TTTTTA-AAAAATTATAACA
67890440 TAAATAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (20 bp):
TTTTTAAAAAATTATAACAC
Found at i:67899085 original size:49 final size:47
Alignment explanation
Indices: 67898969--67899279 Score: 210
Period size: 46 Copynumber: 6.7 Consensus size: 47
67898959 GGTATAATGC
*
67898969 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
*
67899016 CGATGCCATGTCCCAGACATGGT-TTACACTAGCTC-TCACATATCTATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-C--ATC-AAGT
* * *
67899065 CGATGCCATGTCCCAGACATGGTCTTACACTAACACAT-C-TCGTAG-
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATC-AAGT
* * * *
67899110 CTGATG-CATGTCTCACACAT-GTCTTACACTGGCTTACAT-C-TCGAGGT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTAGC-T-CATCCATC-AAGT
* * *
67899157 CGATG-CATGTCCCAAAC-TTGTATTACACTAGCTC-TCGTC-TCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC--CATCAA-GT
* *
67899203 TGATGCCATGTCCCAGACATGATCTTACAC-AGGCTC-T-CAT-AATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTA-GCTCATCCATCAA-GT
67899248 GGCCGATG-CATGTCCCAGACAT-GTCTTACACT
1 ---CGATGCCATGTCCCAGACATGGTCTTACACT
67899280 GGCACACAAA
Statistics
Matches: 215, Mismatches: 26, Indels: 46
0.75 0.09 0.16
Matches are distributed among these distances:
43 1 0.00
44 12 0.06
45 24 0.11
46 70 0.33
47 50 0.23
48 20 0.09
49 27 0.13
50 10 0.05
51 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
Found at i:67899231 original size:94 final size:95
Alignment explanation
Indices: 67898969--67899279 Score: 227
Period size: 94 Copynumber: 3.3 Consensus size: 95
67898959 GGTATAATGC
* * ** * *
67898969 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATC-AAG-TCGATGCCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTATTACACTAACACAT-C-TCGTAGCT-GATGCCATGTCCCAG
* * *
67899032 ACATGGT-TTACACTAGCTCTCACATATCTATGT
63 ACAT-GTCTTACACTGGCTCTCACATATCGAGGT
* * * *
67899065 CGATGCCATGTCCCAGACATGGTCTTACACTAACACATCTCGTAGCTGATG-CATGTCTCACACA
1 CGATGCCATGTCCCAAACATGGTATTACACTAACACATCTCGTAGCTGATGCCATGTCCCAGACA
*
67899129 TGTCTTACACTGGCT-T-ACATCTCGAGGT
66 TGTCTTACACTGGCTCTCACATATCGAGGT
* * * *
67899157 CGATG-CATGTCCCAAAC-TTGTATTACACTAGCTC-TCGTC-TCAATGTTGATGCCATGTCCCA
1 CGATGCCATGTCCCAAACATGGTATTACACTAACACATC-TCGT--A-GCTGATGCCATGTCCCA
* * * *
67899218 GACATGATCTTACACAGGCTCTCATA-AT-GTGGC
62 GACATG-TCTTACACTGGCTCTCACATATCGAGGT
* *
67899251 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAAACATGGTATTACACT
67899280 GGCACACAAA
Statistics
Matches: 178, Mismatches: 25, Indels: 26
0.78 0.11 0.11
Matches are distributed among these distances:
89 3 0.02
90 15 0.08
91 12 0.07
92 20 0.11
93 16 0.09
94 64 0.36
95 10 0.06
96 38 0.21
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (95 bp):
CGATGCCATGTCCCAAACATGGTATTACACTAACACATCTCGTAGCTGATGCCATGTCCCAGACA
TGTCTTACACTGGCTCTCACATATCGAGGT
Found at i:67899256 original size:140 final size:139
Alignment explanation
Indices: 67898967--67899282 Score: 349
Period size: 140 Copynumber: 2.2 Consensus size: 139
67898957 AGGGTATAAT
*
67898967 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAA
* *
67899032 ACATGGTTTACACTAGCTCTCACATATCTATGTCGATGCCATGTCCCAGACATGGTCTTACACTA
64 ACATGGTTTACACTAGCTCT-ACATATCAATGTCGATGCCATGTCCCAGACATGATCTTACACTA
67899097 ACACATCTCGTA
128 ACACATCTCGTA
* * * *
67899109 GCTGATGCATGTCTCACACATGTCTTACACTGGCTTACAT-C-TCGAGGTCGATG-CATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-T-CATCCATC-AAGTCGATGCCATGTCCCA
* * * *
67899171 AAC-TTGTATTACACTAGCTCT-CGTCTCAATGTTGATGCCATGTCCCAGACATGATCTTACAC-
63 AACATGGT-TTACACTAGCTCTACATATCAATGTCGATGCCATGTCCCAGACATGATCTTACACT
* * * *
67899233 AGGCTC-TCATAATGTG
127 A-ACACATC-T--CGTA
67899249 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
67899283 ACACAAATAA
Statistics
Matches: 148, Mismatches: 18, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
137 3 0.02
138 39 0.26
139 3 0.02
140 72 0.49
141 22 0.15
142 9 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (139 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCATCCATCAAGTCGATGCCATGTCCCAAAC
ATGGTTTACACTAGCTCTACATATCAATGTCGATGCCATGTCCCAGACATGATCTTACACTAACA
CATCTCGTA
Found at i:67905009 original size:47 final size:47
Alignment explanation
Indices: 67904944--67905309 Score: 261
Period size: 47 Copynumber: 7.7 Consensus size: 47
67904934 TTTGTCTGCT
*
67904944 AGTGTAAGA-CATGTCTGGGACAT-GCACCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCC
* *
67904990 AGTGTAAGACCATGTCTGGGACATGGCATCGG--CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCC
* * * * * **
67905038 AGAGTAAGA-CATGTCTGGGACAT-GCATCAGC-TATGA-GATGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGA-GAGCC
* * * * * *
67905082 AGTGTAAGACCATGTTTGGGACACGGCATCGACACGTATAT-AGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAT-TATGA-GAGCC
* * *
67905130 AGTGTAAGACCATGTCTGGGACATGGCATCAGCACGAATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--AT-TATGAGAGCC
** * * * *
67905180 AGTGTAAGACCATGTCTCAGACATGGCATCGGCCATGATTTTGAAAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CA-CATTATGAGAGCC
* *
67905229 AGTGTAAGATCATGTCTGGGACATGGCAT-TG-AC-TTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT-AT-GA-GAGCC
*
67905276 AGTGTAAGACCATGTCTGGGACATGGTATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
67905310 TTTTACCCTA
Statistics
Matches: 251, Mismatches: 47, Indels: 41
0.74 0.14 0.12
Matches are distributed among these distances:
43 2 0.01
44 14 0.06
45 17 0.07
46 24 0.10
47 61 0.24
48 60 0.24
49 33 0.13
50 37 0.15
51 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCC
Found at i:67916037 original size:42 final size:42
Alignment explanation
Indices: 67915925--67916088 Score: 177
Period size: 42 Copynumber: 3.9 Consensus size: 42
67915915 TAAGATGCCA
* * ** *
67915925 ATGCCATATCCCAGATATGGTCTTACATGGGACCACATATCG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCG
* ** * *
67915967 ATGCCGATATCCTAG-CTATGGTCTTACACGATGTCTCATGTCG
1 ATGCC-ATATCCCAGAC-ATGGTCTTACACGAAATCACATATCG
* *
67916010 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATTG
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCG
* *
67916052 ATTCCATATCCCAGATATGGTCTTACACGAAATCACA
1 ATGCCATATCCCAGACATGGTCTTACACGAAATCACA
67916089 CATAACCCTA
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 67 0.67
43 33 0.33
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAATCACATATCG
Found at i:67916049 original size:85 final size:84
Alignment explanation
Indices: 67915925--67916081 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 84
67915915 TAAGATGCCA
* * ** * *
67915925 ATGCCATATCCCAGATATGGTCTTACATGGGACCACATATCGATGCCGATATCCTAGCTATGGTC
1 ATGCCATATCCCAGACATGGTCTTACACGAAACCACATATCGATGCC-ATATCCCAGATATGGTC
67915990 TTACACGATGTCTCATGTCG
65 TTACACGATGTCTCATGTCG
* * * *
67916010 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATTGATTCCATATCCCAGATATGGTCT
1 ATGCCATATCCCAGACATGGTCTTACACGAAACCACATATCGATGCCATATCCCAGATATGGTCT
67916075 TACACGA
66 TACACGA
67916082 AATCACACAT
Statistics
Matches: 62, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
84 23 0.37
85 39 0.63
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTCTTACACGAAACCACATATCGATGCCATATCCCAGATATGGTCT
TACACGATGTCTCATGTCG
Found at i:67922042 original size:40 final size:40
Alignment explanation
Indices: 67921998--67922081 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
67921988 TGAGGAATTG
**
67921998 TATCCAAAATTAAAGACCCGTAGGCTATATGCTGGAATGT
1 TATCCAAAATTAAAGACCCACAGGCTATATGCTGGAATGT
**** *
67922038 TATCCGGGCTTAAAGACCCACAGGCTATATGTTGGAATGT
1 TATCCAAAATTAAAGACCCACAGGCTATATGCTGGAATGT
67922078 TATC
1 TATC
67922082 TGGGCTTAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (40 bp):
TATCCAAAATTAAAGACCCACAGGCTATATGCTGGAATGT
Found at i:67922087 original size:40 final size:40
Alignment explanation
Indices: 67922007--67922143 Score: 170
Period size: 40 Copynumber: 3.5 Consensus size: 40
67921997 GTATCCAAAA
*
67922007 TTAAAGACCCGTAGGCTATATGCTGGAATGTTATCCGGGC
1 TTAAAGACCCGCAGGCTATATGCTGGAATGTTATCCGGGC
* * *
67922047 TTAAAGACCCACAGGCTATATGTTGGAATGTTATCTGGGC
1 TTAAAGACCCGCAGGCTATATGCTGGAATGTTATCCGGGC
* * * *
67922087 TTAAAGGCCCGCAGGCT-TCGTGCTAGAATGCTATCCGGGC
1 TTAAAGACCCGCAGGCTAT-ATGCTGGAATGTTATCCGGGC
*
67922127 -TAGAGACCCGCAGGCTA
1 TTAAAGACCCGCAGGCTA
67922144 CGAGCTGGTA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 15 0.18
40 67 0.82
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTAAAGACCCGCAGGCTATATGCTGGAATGTTATCCGGGC
Found at i:67926814 original size:19 final size:20
Alignment explanation
Indices: 67926790--67926827 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
67926780 GGTACCACCA
67926790 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
67926809 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
67926828 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:67927166 original size:93 final size:93
Alignment explanation
Indices: 67927056--67927226 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
67927046 GCCCCTAAGT
* *
67927056 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
67927121 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
67927149 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
67927214 CGAGTTCGGATGC
66 CGAGTTCGGATGC
67927227 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:67927223 original size:46 final size:46
Alignment explanation
Indices: 67927051--67927223 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
67927041 AACCCGCCCC
* * * *
67927051 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
67927097 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
67927145 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
67927190 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
67927224 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:67938503 original size:40 final size:41
Alignment explanation
Indices: 67938466--67938571 Score: 137
Period size: 40 Copynumber: 2.7 Consensus size: 41
67938456 TGAGGAATTG
* *
67938466 TATCTGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATGT
1 TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTGGAATGC
* * *
67938506 TATCCGGGCTTAAAGACCTGCAGGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTGGAATGC
*
67938546 TATCCGGGC-TAGAGACCCGCAGGCTA
1 TATCCGGGCTTAAAGACCCGCAGGCTA
67938572 CGAGCTGGTA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 15 0.26
40 42 0.74
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (41 bp):
TATCCGGGCTTAAAGACCCGCAGGCTATCATGCTGGAATGC
Found at i:67945066 original size:164 final size:165
Alignment explanation
Indices: 67944874--67945203 Score: 574
Period size: 164 Copynumber: 2.0 Consensus size: 165
67944864 GGAATGTCAT
*
67944874 AAGTGAACAGTTTGAGTCATTTTTTAGAATTTTGGACTTAATCAGATAAAAATATGATGAAGATA
1 AAGTGAACAATTTGAGTCATTTTTTAGAATTTTGGA-TTAATCAGATAAAAATATGATGAAGATA
* * *
67944939 -TTTTTTCATTGGCACTTATGGCTATTAATGTATTAGTGTTTATAAGCATGTGTGGTGATGGGAT
65 TTTTTTTCATTAGCACTTATGGCTATTAATGTATTAGTGTTTATAAGCATGTGTGGTGATAGGAG
*
67945003 GAAATTTTTATTTTTAAAACCAATTTT-ATATTGAA
130 GAAATTTTGATTTTTAAAACCAATTTTGATATTGAA
*
67945038 AAGTGAACAATTTGAGTCATTTTTTAGAATTTTGGATTAATCAGATAAAAATATGATGAGGATAT
1 AAGTGAACAATTTGAGTCATTTTTTAGAATTTTGGATTAATCAGATAAAAATATGATGAAGATAT
*
67945103 TTTTTTCATTAGCACTTATGGCTGTTAATGTATTAGTGTTTATAAGCATGTGTGGTGATAGGAGG
66 TTTTTTCATTAGCACTTATGGCTATTAATGTATTAGTGTTTATAAGCATGTGTGGTGATAGGAGG
67945168 AAATTTTGATTTTTAAAACCAATTTTGATATTGAA
131 AAATTTTGATTTTTAAAACCAATTTTGATATTGAA
67945203 A
1 A
67945204 GTTAATCACC
Statistics
Matches: 157, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
163 27 0.17
164 121 0.77
165 9 0.06
ACGTcount: A:0.33, C:0.06, G:0.19, T:0.42
Consensus pattern (165 bp):
AAGTGAACAATTTGAGTCATTTTTTAGAATTTTGGATTAATCAGATAAAAATATGATGAAGATAT
TTTTTTCATTAGCACTTATGGCTATTAATGTATTAGTGTTTATAAGCATGTGTGGTGATAGGAGG
AAATTTTGATTTTTAAAACCAATTTTGATATTGAA
Found at i:67948070 original size:38 final size:38
Alignment explanation
Indices: 67947978--67948102 Score: 160
Period size: 39 Copynumber: 3.2 Consensus size: 38
67947968 GGCACGAAGG
* * * *
67947978 CCCGAATATAATACCAGCACTAGGCCTGCGGGATATTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGAT-TTAA
67948017 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
** *
67948055 CCCGGATATTTTACCAGCACGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
67948094 GCCCGGATA
1 -CCCGGATA
67948103 CACATCAAAT
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 33 0.43
39 36 0.47
40 8 0.10
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:67955585 original size:42 final size:42
Alignment explanation
Indices: 67955431--67955597 Score: 140
Period size: 42 Copynumber: 4.0 Consensus size: 42
67955421 AATCATACCA
* **** ***
67955431 ATGCCATATCTCAGATATGGTCTTACATGTGATCTCATATTA
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAACG
* * * * *
67955473 ATGCCAATAGCCCAGCTATGGTCTTACAC-GATTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACAAAATCTCATAACG
* * *
67955515 ATGCCATGTCCCTGACATGGTCTTACACAAAATCTCATAACG
1 ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAACG
* *
67955557 ATGTCATATCCCAGATATGGTTTTACACATAAA-CTCATAAC
1 ATGCCATATCCCAGATATGGTCTTACACA-AAATCTCATAAC
67955598 CCTAATGTCA
Statistics
Matches: 100, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 18 0.18
42 60 0.60
43 22 0.22
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAATCTCATAACG
Found at i:67965933 original size:49 final size:49
Alignment explanation
Indices: 67965872--67965967 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
67965862 AACTCTTCCC
67965872 TGTTCTGCTGTTCGACAGTTTCAACTCTTCTTCACTAAAAATTAATCCT
1 TGTTCTGCTGTTCGACAGTTTCAACTCTTCTTCACTAAAAATTAATCCT
*
67965921 TGTTCTGTTGTTCGACAGTTTCAACTCTTCTTCACTAAAAATTAATC
1 TGTTCTGCTGTTCGACAGTTTCAACTCTTCTTCACTAAAAATTAATC
67965968 ATCTCCTAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (49 bp):
TGTTCTGCTGTTCGACAGTTTCAACTCTTCTTCACTAAAAATTAATCCT
Found at i:67966884 original size:48 final size:48
Alignment explanation
Indices: 67966813--67967085 Score: 264
Period size: 48 Copynumber: 5.7 Consensus size: 48
67966803 GGTAAAATGT
* * *
67966813 TGATGCCATATCCCAGACATGGTCTTACACTGGCTCACATGTTGAGGC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGATGAGGC
* * * * * *
67966861 TGATGCCGTATCCCAGACATGGTCTTACACTAGCTCTCAT-CTCAATGC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGAT-GAGGC
* * * * *
67966909 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGATGAGGC
* * * * * * *
67966957 CGATCCCATGTCCCAAACATGGTCTTACACTAGCGCATA-GATCATCGC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGATGA-GGC
** *
67967005 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTA-GC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGATG-AGGC
* *
67967053 CGATGCCATGTCCCAAACATGGTCTTACACTAG
1 TGATGCCATGTCCCAGACATGGTCTTACACTAG
67967086 TGCACATATC
Statistics
Matches: 187, Mismatches: 33, Indels: 10
0.81 0.14 0.04
Matches are distributed among these distances:
47 3 0.02
48 180 0.96
49 3 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGATGAGGC
Found at i:67966937 original size:96 final size:96
Alignment explanation
Indices: 67966814--67967085 Score: 352
Period size: 96 Copynumber: 2.8 Consensus size: 96
67966804 GTAAAATGTT
* * ** * * * *
67966814 GATGCCATATCCCAGACATGGTCTTACACTGGCTCACATGTTGAGGCTGATGCCGTATCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCGATGCCATGTCCCAAAC
* **
67966879 ATGGTCTTACACTAGCTC-TCATCTCAAT-GCC
66 ATGGTCTTACACTAGCGCAT-AGATC-ATCGCC
* *
67966910 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATCCCATGTCCCAAAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCGATGCCATGTCCCAAAC
*
67966975 ATGGTCTTACACTAGCGCATAGATCATCGCT
66 ATGGTCTTACACTAGCGCATAGATCATCGCC
* *
67967006 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTTATAATGTA-GCCGATGCCATGTCCCAAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATG-AGGCCGATGCCATGTCCCAAA
67967070 CATGGTCTTACACTAG
65 CATGGTCTTACACTAG
67967086 TGCACATATC
Statistics
Matches: 155, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
95 2 0.01
96 152 0.98
97 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGAGGCCGATGCCATGTCCCAAAC
ATGGTCTTACACTAGCGCATAGATCATCGCC
Found at i:67974374 original size:46 final size:46
Alignment explanation
Indices: 67974322--67974450 Score: 188
Period size: 46 Copynumber: 2.8 Consensus size: 46
67974312 TGTAACCCGC
* * *
67974322 CCATAAGTGAACTCGGAATCAACTCAACAAGCTC-GAGCGTTAGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CGTTAGCAT
* * *
67974368 CCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
67974414 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
67974451 TGCCTAGTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 72 0.97
47 2 0.03
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
Found at i:67979467 original size:46 final size:46
Alignment explanation
Indices: 67979400--67979528 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
67979390 TGTAACCCGC
* *
67979400 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA-CGTTCGCAT
*
67979446 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* *
67979492 CCATAAGTGAACTCAGACTCAACTCAACGTGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
67979529 TGCCTAGTTA
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
46 74 0.97
47 2 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:67985443 original size:40 final size:40
Alignment explanation
Indices: 67985399--67985630 Score: 279
Period size: 40 Copynumber: 5.8 Consensus size: 40
67985389 ATAACCACAA
67985399 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
67985439 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* ** * * *
67985479 GCACAATTGCCTTCGGGTCTTAAACCGGGTATAGCAATTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * * *
67985519 ACACAAATGCCTTCGGGTCTTAGCTCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
67985559 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
67985599 GCACAAATGCCTTCGGGTCTTAGCCCAGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
67985631 CATTCAAATG
Statistics
Matches: 156, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
39 6 0.04
40 143 0.92
41 7 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:67985524 original size:80 final size:80
Alignment explanation
Indices: 67985379--67985629 Score: 387
Period size: 80 Copynumber: 3.1 Consensus size: 80
67985369 TCTTCGGAAT
* * * * * * *
67985379 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
67985443 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * *
67985458 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAAACCGGGTATAGCAATTCACAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
67985523 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
67985538 TTAGCTCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
67985603 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
67985618 TTAGCCCAGATA
1 TTAGCCCGGATA
67985630 TCATTCAAAT
Statistics
Matches: 155, Mismatches: 16, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 4 0.03
80 151 0.97
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:67985613 original size:120 final size:120
Alignment explanation
Indices: 67985400--67985620 Score: 320
Period size: 120 Copynumber: 1.8 Consensus size: 120
67985390 TAACCACAAG
* * *
67985400 CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCC
1 CACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGCCTTCGGGTCTTAACCC
* *
67985465 GGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAAACCGGGTATAGCAATTCA
66 GGATAAAAGCACTAGCACAAATGCCTTCGGGTCTTAAACCGGGTATAGCAATTCA
* *
67985520 CACAAATGCCTTCGGGTCTTAGCTCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTCTTAACC
1 CACAAATGCCTTCGGGTCTTAGCCCGGAT-AAATCAACTAGCACAAATGCCTTCGGGTCTTAACC
* * *
67985584 CGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTA
65 CGGATAAAAGC-ACTAGCACAAATGCCTTCGGGTCTTA
67985621 GCCCAGATAT
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
119 3 0.03
120 82 0.92
121 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (120 bp):
CACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGCCTTCGGGTCTTAACCC
GGATAAAAGCACTAGCACAAATGCCTTCGGGTCTTAAACCGGGTATAGCAATTCA
Found at i:67987466 original size:18 final size:18
Alignment explanation
Indices: 67987443--67987478 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
67987433 TGCATAGGGA
67987443 CTTAGTTTTATGATAGAT
1 CTTAGTTTTATGATAGAT
67987461 CTTAGTTTTATGATAGAT
1 CTTAGTTTTATGATAGAT
67987479 GCTTTTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
CTTAGTTTTATGATAGAT
Found at i:67990170 original size:15 final size:15
Alignment explanation
Indices: 67990150--67990179 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
67990140 TATGATATTG
*
67990150 TATCTTGGATTTCTT
1 TATCTTGGACTTCTT
67990165 TATCTTGGACTTCTT
1 TATCTTGGACTTCTT
67990180 AATCCTAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.17, G:0.13, T:0.57
Consensus pattern (15 bp):
TATCTTGGACTTCTT
Found at i:67992965 original size:50 final size:50
Alignment explanation
Indices: 67992911--67993146 Score: 240
Period size: 50 Copynumber: 4.7 Consensus size: 50
67992901 TAAGATGGTT
*
67992911 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * * * *
67992961 TTAGGTCGCATGTGTAGTATTAAGTGCAGGCTACTATGCGTACCTGACAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAG
* * * * * *
67993012 TTCGATCATGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * *
67993062 TTACGTCATGTGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAAATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * *
67993112 TT-GGTCGCATGTGTAGTACTAAGTGCAGACTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
67993147 TGCGTACTAA
Statistics
Matches: 147, Mismatches: 38, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
49 27 0.18
50 83 0.56
51 37 0.25
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:67993098 original size:101 final size:101
Alignment explanation
Indices: 67992923--67993105 Score: 276
Period size: 101 Copynumber: 1.8 Consensus size: 101
67992913 AGGTCACGTG
* * *
67992923 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTATTAAGTGC
1 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTACGTCACATGTGTAGTACTAAGTGC
67992988 AGGCTACTATGCGTACCTGACAACTTCGATCATGTA
66 AGGCTACTATGCGTACCTGACAACTTCGATCATGTA
* * * ** *
67993024 TGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTACGTCATGTGTGTAGTACTAAGTGT
1 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTACGTCACATGTGTAGTACTAAGTGC
*
67993089 AGGCTACTATGTGTACC
66 AGGCTACTATGCGTACC
67993106 AAATTGTTGG
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (101 bp):
TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTACGTCACATGTGTAGTACTAAGTGC
AGGCTACTATGCGTACCTGACAACTTCGATCATGTA
Found at i:67993123 original size:101 final size:98
Alignment explanation
Indices: 67992921--67993146 Score: 258
Period size: 101 Copynumber: 2.3 Consensus size: 98
67992911 TTAGGTCACG
* * *
67992921 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTATTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTACGTCACATGTGTAGTACTAAGT
67992986 GCAGGCTACTATGCGTACCTGACAACTTCGATCA
66 GCAGGCTACTATGCGTACC-GACAACTTCGATCA
* * * **
67993020 TGTATGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTACGTCATGTGTGTAGTACTAA
1 TG--TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTACGTCACATGTGTAGTACTAA
* * * * *
67993085 GTGTAGGCTACTATGTGTACC-A-AATTGTTGGTCGCA
64 GTGCAGGCTACTATGCGTACCGACAACT-TCGAT--CA
*
67993121 TGTGTAGTACTAAGTGCAGACTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
67993147 TGCGTACTAA
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
98 3 0.03
99 29 0.27
101 76 0.70
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAGTTACGTCACATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCGACAACTTCGATCA
Found at i:68004545 original size:17 final size:19
Alignment explanation
Indices: 68004513--68004550 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
68004503 GGGCCGAAAT
*
68004513 GGGCTGTGTGGGTCCA-AC
1 GGGCTGTGTGGCTCCACAC
68004531 GGGCT-TGTGGCTCCACAC
1 GGGCTGTGTGGCTCCACAC
68004549 GG
1 GG
68004551 ATAAGTTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.11, C:0.26, G:0.42, T:0.21
Consensus pattern (19 bp):
GGGCTGTGTGGCTCCACAC
Found at i:68005013 original size:26 final size:26
Alignment explanation
Indices: 68004984--68005046 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
68004974 ACTGATACTG
* *
68004984 GCAGCTTTGCTGCATTACTATTATTA
1 GCAGCTTTGCTGCAATAATATTATTA
* *
68005010 GCAGCTTTGTTGCAATAATATTATTG
1 GCAGCTTTGCTGCAATAATATTATTA
68005036 GCAGCTTTGCT
1 GCAGCTTTGCT
68005047 ACGTTATTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.41
Consensus pattern (26 bp):
GCAGCTTTGCTGCAATAATATTATTA
Found at i:68007754 original size:26 final size:26
Alignment explanation
Indices: 68007685--68007780 Score: 111
Period size: 26 Copynumber: 3.7 Consensus size: 26
68007675 CTTTACATAT
* **
68007685 ATGCTCACACGAGTTACGAAAAGAGC
1 ATGCTCACACGAGCTGTGAAAAGAGC
* * *
68007711 ATGCTCACATGAGTTGTGAAAAGAGT
1 ATGCTCACACGAGCTGTGAAAAGAGC
* *
68007737 ATGCTCACACGAGCTGTGAAATGGGC
1 ATGCTCACACGAGCTGTGAAAAGAGC
*
68007763 CTGCTCACACGAGCTGTG
1 ATGCTCACACGAGCTGTG
68007781 GGTCAAAACG
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 60 1.00
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (26 bp):
ATGCTCACACGAGCTGTGAAAAGAGC
Found at i:68010276 original size:98 final size:97
Alignment explanation
Indices: 68010130--68010305 Score: 239
Period size: 98 Copynumber: 1.8 Consensus size: 97
68010120 GCACATCAAA
* * *
68010130 GTCGATGCCATGTCCCAGAAAGGTCTTGCACTGAATTTCATATATCGAGGCTGATGTCGTGTCCT
1 GTCGATGCCATGTCCCAGAAAGGTCTTACACTGAATTTCATATATCGAGGCCGATG-CATGTCCT
*
68010195 AGATAGGTCTTACATTGGCTCTCATCTATCGGT
65 AGACAGGTCTTACATTGGCTCTCATCTATCGGT
* * *
68010228 GTCGATGCCATGTCCCAGATAGGTCTTACACT-AGCTTGT-ATATCTCGAGGCCGATGCATGTCC
1 GTCGATGCCATGTCCCAGAAAGGTCTTACACTGA-ATT-TCATATATCGAGGCCGATGCATGTCC
*
68010291 TAGACATGTCTTACA
64 TAGACAGGTCTTACA
68010306 CTAGCTCTTG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
97 20 0.29
98 47 0.69
99 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (97 bp):
GTCGATGCCATGTCCCAGAAAGGTCTTACACTGAATTTCATATATCGAGGCCGATGCATGTCCTA
GACAGGTCTTACATTGGCTCTCATCTATCGGT
Found at i:68010283 original size:49 final size:48
Alignment explanation
Indices: 68010132--68010311 Score: 150
Period size: 49 Copynumber: 3.7 Consensus size: 48
68010122 ACATCAAAGT
* * *
68010132 CGATGCCATGTCCCAGAAAGGTCTTGCACT-GAATTTCATATATCGAGGC
1 CGATGCCATGTCCCAGATAGGTCTTACACTAG-CTTT-ATATATCGAGGC
* * * * * * * * *
68010181 TGATGTCGTGTCCTAGATAGGTCTTACATTGGCTCTCATCTATCG-GTGT
1 CGATGCCATGTCCCAGATAGGTCTTACACTAGCT-TTATATATCGAG-GC
*
68010230 CGATGCCATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTCGAGGC
1 CGATGCCATGTCCCAGATAGGTCTTACACTAGCTT-TATATATCGAGGC
* * *
68010279 CGATG-CATGTCCTAGACATGTCTTACACTAGCT
1 CGATGCCATGTCCCAGATAGGTCTTACACTAGCT
68010312 CTTGCCTCAA
Statistics
Matches: 102, Mismatches: 24, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
48 27 0.26
49 72 0.71
50 3 0.03
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (48 bp):
CGATGCCATGTCCCAGATAGGTCTTACACTAGCTTTATATATCGAGGC
Found at i:68010306 original size:48 final size:46
Alignment explanation
Indices: 68010230--68010402 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
68010220 CTATCGGTGT
* * *
68010230 CGATGCCATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTCTATATCTC-A-GC
* **
68010279 CGATGCATGTCCTAGACATGTCTTACACTAGC-TCT-TGCCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTCTATATCTC-A-GC
* * * * *
68010325 TGATGCATGTCCCAGACATGCCTTACACTGGCTCTCAATATGT-AGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TCTATATCTCAGC
*
68010371 CGATGCATGTCCTAGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
68010403 ACACGTATCA
Statistics
Matches: 101, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
46 65 0.64
47 3 0.03
48 26 0.26
49 7 0.07
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTCTATATCTCAGC
Found at i:68011083 original size:20 final size:21
Alignment explanation
Indices: 68011058--68011097 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
68011048 AGAATTTCAA
*
68011058 TTATTTCACACA-TTTACAAC
1 TTATTTCACAAACTTTACAAC
*
68011078 TTATTTTACAAACTTTACAA
1 TTATTTCACAAACTTTACAA
68011098 AATATCTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (21 bp):
TTATTTCACAAACTTTACAAC
Found at i:68012574 original size:42 final size:43
Alignment explanation
Indices: 68012462--68012618 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
68012452 ATGTGTTAAT
* * *
68012462 GTGTAAGACCATGTCTAGGACGTTGGCATCGCTTCTGTTTTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGCTTCTGATTTAC
*
68012505 GTGTAAGACCATGTCTGGAACATTGGCATCG-TATCTGATTTA-
1 GTGTAAGACCATGTCTGGGACATTGGCATCGCT-TCTGATTTAC
* * * * *
68012547 GTGTAAGACCCTGTTTGGGACAATGGCATCGATGTTTGA-TTAC
1 GTGTAAGACCATGTCTGGGACATTGGCATCGCT-TCTGATTTAC
* * * **
68012590 ATGTAAGAACACGTCTGGGATGTTGGCAT
1 GTGTAAGACCATGTCTGGGACATTGGCAT
68012619 TGTTTATGCT
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
42 31 0.33
43 62 0.67
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGGCATCGCTTCTGATTTAC
Found at i:68019830 original size:49 final size:49
Alignment explanation
Indices: 68019769--68019899 Score: 158
Period size: 49 Copynumber: 2.7 Consensus size: 49
68019759 ACATCAAAGT
* *
68019769 CGATGCCATGTCCCAGATAGGTCTTACATTGACT-TTCATATATCGAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTT-ATATATCG-GTGC
* * * *
68019818 CGATGCCGTGTCCCAGACAGATCTTACACTGACTCTTATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTTATATATCGGTGC
* *
68019867 CGATGTCATGTCCCAAACAGGTCTTACACTGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
68019900 ACACAATAAG
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 1 0.01
49 67 0.96
50 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTTATATATCGGTGC
Found at i:68020467 original size:38 final size:38
Alignment explanation
Indices: 68020425--68020500 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
68020415 CAATATAACC
68020425 AAAGCAAGATAGATTTCAAGTAATTTTAACAATAACAT
1 AAAGCAAGATAGATTTCAAGTAATTTTAACAATAACAT
*
68020463 AAAGCAAGATAGATTTCAATTAATTTTAACAATAACAT
1 AAAGCAAGATAGATTTCAAGTAATTTTAACAATAACAT
68020501 GGATAACATG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (38 bp):
AAAGCAAGATAGATTTCAAGTAATTTTAACAATAACAT
Found at i:68020649 original size:27 final size:28
Alignment explanation
Indices: 68020584--68020640 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
68020574 AACCTCGTAC
* *
68020584 TTCCCGATTTAAGTCCAAATCTGGGTTT
1 TTCCCGATCTAAGTCCAAATCTAGGTTT
68020612 TTCCCGATCTAAGTCCAAATCTAGGTTT
1 TTCCCGATCTAAGTCCAAATCTAGGTTT
68020640 T
1 T
68020641 CTTGCTCTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.39
Consensus pattern (28 bp):
TTCCCGATCTAAGTCCAAATCTAGGTTT
Found at i:68022010 original size:17 final size:17
Alignment explanation
Indices: 68021988--68022020 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
68021978 CAATTCAACC
68021988 CAAAATT-CATATTTTTA
1 CAAAATTACAT-TTTTTA
68022005 CAAAATTACATTTTTT
1 CAAAATTACATTTTTT
68022021 CCCCTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
CAAAATTACATTTTTTA
Found at i:68026269 original size:24 final size:24
Alignment explanation
Indices: 68026240--68026287 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
68026230 ATGTTAATTT
68026240 TACAACTTATCAAATATTCCCACA
1 TACAACTTATCAAATATTCCCACA
68026264 TACAACTTATCAAATATTCCCACA
1 TACAACTTATCAAATATTCCCACA
68026288 CTTAAGCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (24 bp):
TACAACTTATCAAATATTCCCACA
Found at i:68027929 original size:7 final size:7
Alignment explanation
Indices: 68027909--68027939 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
68027899 TAAGTTTAAG
68027909 AAAATAA
1 AAAATAA
68027916 TAAAATAA
1 -AAAATAA
68027924 AAAATAA
1 AAAATAA
68027931 AAAATAA
1 AAAATAA
68027938 AA
1 AA
68027940 CAAAAATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (7 bp):
AAAATAA
Found at i:68028111 original size:10 final size:10
Alignment explanation
Indices: 68028098--68028166 Score: 52
Period size: 13 Copynumber: 6.4 Consensus size: 10
68028088 TTAGTAAAAC
68028098 AAAAATAAAT
1 AAAAATAAAT
68028108 AAAAATAAAT
1 AAAAATAAAT
68028118 AATACTAATAAAT
1 AA-A--AATAAAT
68028131 AACACTAATAAAT
1 AA-A--AATAAAT
*
68028144 AAATA-AAAT
1 AAAAATAAAT
68028153 -AAAATAAAAT
1 AAAAAT-AAAT
68028163 AAAA
1 AAAA
68028167 GGGGTGGCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 17 0.34
11 4 0.08
12 1 0.02
13 21 0.42
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:68028127 original size:13 final size:13
Alignment explanation
Indices: 68028111--68028145 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
68028101 AATAAATAAA
*
68028111 AATAAATAATACT
1 AATAAATAACACT
68028124 AATAAATAACACT
1 AATAAATAACACT
68028137 AATAAATAA
1 AATAAATAA
68028146 ATAAAATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (13 bp):
AATAAATAACACT
Found at i:68030710 original size:17 final size:17
Alignment explanation
Indices: 68030688--68030721 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
68030678 AGCCTATCTT
68030688 TGTTACCTAACTACATA
1 TGTTACCTAACTACATA
*
68030705 TGTTACCTAACTCCATA
1 TGTTACCTAACTACATA
68030722 CTTAGCCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (17 bp):
TGTTACCTAACTACATA
Found at i:68040794 original size:27 final size:28
Alignment explanation
Indices: 68040736--68040847 Score: 115
Period size: 27 Copynumber: 4.1 Consensus size: 28
68040726 AGGAAGCGTC
* * * *
68040736 CTGGTGGCTATGCCATAAATTATCTGAT
1 CTGGTGGCTCTGCCACATATTATCTGTT
*
68040764 CTGGTGGCTCTGCCACATA-TATCTTTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
68040791 CTGGTGGCTCTGCCACA-ATTATCTGTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
* * **
68040818 ATGGTGACTCTGTTAC--ATTATCTGTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
68040844 CTGG
1 CTGG
68040848 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
26 14 0.19
27 42 0.58
28 16 0.22
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACATATTATCTGTT
Found at i:68040823 original size:54 final size:54
Alignment explanation
Indices: 68040736--68040847 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
68040726 AGGAAGCGTC
* * *
68040736 CTGGTGGCTATGCCATAAATTATCTGATCTGGTGGCTCTGCCACATATATCTTTT
1 CTGGTGGCTATGCCATAAATTATCTGATATGGTGACTCTGCCACAT-TATCTGTT
* * * **
68040791 CTGGTGGCTCTGCCA-CAATTATCTGTTATGGTGACTCTGTTACATTATCTGTT
1 CTGGTGGCTATGCCATAAATTATCTGATATGGTGACTCTGCCACATTATCTGTT
68040844 CTGG
1 CTGG
68040848 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 11 0.22
54 24 0.49
55 14 0.29
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCATAAATTATCTGATATGGTGACTCTGCCACATTATCTGTT
Found at i:68046271 original size:25 final size:25
Alignment explanation
Indices: 68046237--68046286 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
68046227 ATTTGAAGCG
* *
68046237 TAAGGAGATTGAGTGCTCAGTAGGT
1 TAAGGAGATTGAGTACTCAATAGGT
68046262 TAAGGAGATTGAGTACTCAATAGGT
1 TAAGGAGATTGAGTACTCAATAGGT
68046287 GATATGGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (25 bp):
TAAGGAGATTGAGTACTCAATAGGT
Found at i:68047282 original size:27 final size:27
Alignment explanation
Indices: 68047251--68047342 Score: 125
Period size: 27 Copynumber: 3.4 Consensus size: 27
68047241 TGCCATAAAT
* *
68047251 TATCTGATCTGGTGTCTCTGCCACATA
1 TATCTGTTCTGGTGACTCTGCCACATA
*
68047278 TATCTGTTCTGGTGGCTCTGCCACA-A
1 TATCTGTTCTGGTGACTCTGCCACATA
*
68047304 TTATCTGTTCTGGTGACTCTGTCACAT-
1 -TATCTGTTCTGGTGACTCTGCCACATA
68047331 TATCTGTTCTGG
1 TATCTGTTCTGG
68047343 CAGCCATGCT
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
26 13 0.22
27 46 0.78
ACGTcount: A:0.15, C:0.24, G:0.21, T:0.40
Consensus pattern (27 bp):
TATCTGTTCTGGTGACTCTGCCACATA
Found at i:68061387 original size:42 final size:42
Alignment explanation
Indices: 68061328--68061408 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
68061318 TCAATATCTT
*
68061328 GCACACTGAGTACCAAAGGATAGCCGAAGCTATTATAATGTC
1 GCACAATGAGTACCAAAGGATAGCCGAAGCTATTATAATGTC
* * *
68061370 GCACAATGAGTGCCAAAGTATAGTCGAAGCTATTATAAT
1 GCACAATGAGTACCAAAGGATAGCCGAAGCTATTATAAT
68061409 CTCAAACACT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (42 bp):
GCACAATGAGTACCAAAGGATAGCCGAAGCTATTATAATGTC
Found at i:68061424 original size:42 final size:42
Alignment explanation
Indices: 68061330--68061425 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 42
68061320 AATATCTTGC
* * **
68061330 ACACTGAGTACCAAAGGATAGCCGAAGCTATTATAATGTCGC
1 ACACTGAGTGCCAAAGGATAGCCGAAGCTATTATAATCTCAA
* * *
68061372 ACAATGAGTGCCAAAGTATAGTCGAAGCTATTATAATCTCAA
1 ACACTGAGTGCCAAAGGATAGCCGAAGCTATTATAATCTCAA
*
68061414 ACACTAAGTGCC
1 ACACTGAGTGCC
68061426 TTTCATAGTC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (42 bp):
ACACTGAGTGCCAAAGGATAGCCGAAGCTATTATAATCTCAA
Found at i:68061512 original size:40 final size:40
Alignment explanation
Indices: 68061468--68061544 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
68061458 CTAACTGCCA
*
68061468 TATATAGCC-AACGCTAT-TCCAAGTCGCACACTAAGTGTTC
1 TATATAGCCGAA-GCTATCTCCAA-TCGCACACAAAGTGTTC
68061508 TATATAGCCGAAGCTATCTCCAATCGCACACAAAGTG
1 TATATAGCCGAAGCTATCTCCAATCGCACACAAAGTG
68061545 CCAAACAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
40 27 0.79
41 7 0.21
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (40 bp):
TATATAGCCGAAGCTATCTCCAATCGCACACAAAGTGTTC
Found at i:68064883 original size:27 final size:27
Alignment explanation
Indices: 68064829--68064939 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
68064819 AGCATTGCTG
* *
68064829 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
68064855 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
68064882 CCAGAACAGAT-ATATATGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
68064909 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
68064936 CCAG
1 CCAG
68064940 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 15 0.20
27 59 0.79
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.23, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:68066386 original size:24 final size:24
Alignment explanation
Indices: 68066349--68066449 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 24
68066339 CCAACACTGT
*
68066349 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
*
68066373 TCTCCCTTACCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* * *
68066397 TATCCCTTATGATCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
68066421 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
68066445 TCTCC
1 TCTCC
68066450 TGACAGACTT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 68 1.00
ACGTcount: A:0.24, C:0.41, G:0.03, T:0.33
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:68072775 original size:27 final size:27
Alignment explanation
Indices: 68072718--68072826 Score: 91
Period size: 27 Copynumber: 4.1 Consensus size: 27
68072708 CATTACTGCT
* *
68072718 AGAACAGATAA-TGT-GACAGAGTCACT
1 AGAACAGATAATTGTGGA-AGAGCCACC
*
68072744 GGAACAGATAATTGTGGAAGAGCCACC
1 AGAACAGATAATTGTGGAAGAGCCACC
*
68072771 AGAACAGAT-ATATGTGGTAGAGCCACC
1 AGAACAGATAAT-TGTGGAAGAGCCACC
* * * *
68072798 A-AGTCAGATAAATGTGGCATAGCCACC
1 AGA-ACAGATAATTGTGGAAGAGCCACC
68072825 AG
1 AG
68072827 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 9, Indels: 10
0.78 0.10 0.11
Matches are distributed among these distances:
26 13 0.19
27 52 0.76
28 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.17
Consensus pattern (27 bp):
AGAACAGATAATTGTGGAAGAGCCACC
Found at i:68074270 original size:24 final size:24
Alignment explanation
Indices: 68074237--68074331 Score: 154
Period size: 24 Copynumber: 4.0 Consensus size: 24
68074227 AACACTATTC
* *
68074237 TCCCTAATCAACTCCTAAATCCTC
1 TCCCTTATCAACTCCTAAATCCTA
* *
68074261 TCTCTTATCAGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
68074285 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
68074309 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
68074332 TTCCTGATAG
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 65 1.00
ACGTcount: A:0.27, C:0.38, G:0.01, T:0.34
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:68078831 original size:43 final size:43
Alignment explanation
Indices: 68078783--68078945 Score: 131
Period size: 43 Copynumber: 3.8 Consensus size: 43
68078773 TATTAACAAG
*
68078783 ATGTGATTATGTGTAACACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * * * *
68078826 ATGTGATTACGTATAAGACCATGCCTGAGA-ATTGGCATCGTT
1 ATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATT
* * *
68078868 ATTTAATT-TCATGTAAGACCATAG-CTGGG-CTATTGGCATCGA-T
1 ATGTGATTAT-GTGTAAGACCAT-GTCTGGGAC-ATTGGCATC-ATT
* * *
68078911 ATGTGATAACT-TGTAAGACCATATCTGGGATATTG
1 ATGTGATTA-TGTGTAAGACCATGTCTGGGACATTG
68078946 CATTGTACGA
Statistics
Matches: 93, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
42 31 0.33
43 61 0.66
45 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGTCTGGGACATTGGCATCATT
Found at i:68079671 original size:21 final size:21
Alignment explanation
Indices: 68079645--68079692 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
68079635 AACCACATGG
68079645 CCAGGCCACACACCCGTGTCT
1 CCAGGCCACACACCCGTGTCT
* **
68079666 CCAGGCCGCATGCCCGTGTCT
1 CCAGGCCACACACCCGTGTCT
68079687 CCAGGC
1 CCAGGC
68079693 TGTGTCCCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.46, G:0.25, T:0.15
Consensus pattern (21 bp):
CCAGGCCACACACCCGTGTCT
Found at i:68080418 original size:5 final size:5
Alignment explanation
Indices: 68080408--68080434 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
68080398 TGAAAACACT
68080408 AAAGG AAAGG AAAGG AAAGG AAAGG AA
1 AAAGG AAAGG AAAGG AAAGG AAAGG AA
68080435 GGGAGTAAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (5 bp):
AAAGG
Found at i:68081635 original size:46 final size:47
Alignment explanation
Indices: 68081499--68081765 Score: 219
Period size: 46 Copynumber: 5.7 Consensus size: 47
68081489 GTATAATGCT
* * * * *
68081499 GATGCCATGTCCCAGACAGGGTCTTACACTAGCTCTCACATATCCATGCC
1 GATGCCATGTCCCAGACA-TGTCTTACACTGGCT-T-ACATCTCGAGGCC
* *
68081549 GATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCGTA-GCT
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGGCC
*
68081595 GATG-CATGTCCCAAACATGTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCC
* * * * * *
68081641 GATG-CATGTCCCAGACATGTCTAACACTAGCTCT-CGTCTCAATGTC
1 GATGCCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCC
* * * *
68081687 GATGCCATATCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCC
*
68081735 GATG-CATGTCCCAGACGTGTCTTACACTGGC
1 GATGCCATGTCCCAGACATGTCTTACACTGGC
68081766 ACACAAATAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
44 12 0.07
45 14 0.08
46 76 0.42
47 27 0.15
48 23 0.13
49 1 0.01
50 29 0.16
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGCC
Found at i:68081711 original size:94 final size:93
Alignment explanation
Indices: 68081496--68081768 Score: 281
Period size: 94 Copynumber: 2.9 Consensus size: 93
68081486 TGGGTATAAT
* * * *
68081496 GCTGATGCCATGTCCCAGACAGGGTCTTACACTAGCTCTCACATATCCATGCCGATGCCATGTCC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATATCGAGGCCGATG-CATGTCC
*
68081561 CAGACATGGTCTTACACTGACACATCTCGTA
64 CAGACAT-GTCTTACACTGACACATCTCATA
* *
68081592 GCTGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCGAGGCCGATGCATGTCCCA
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCA
* * * *
68081654 GACATGTCTAACACTAGCTCTCGTCTCA-A
66 GACATGTCTTACACT-G-ACACATCTCATA
* * *
68081683 TG-TCGATGCCATATCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGTCGATGCATGTC
1 -GCT-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-ATCGAGGCCGATGCATGTC
* *
68081745 CCAGACGTGTCTTACACTGGCACA
63 CCAGACATGTCTTACACTGACACA
68081769 CAAATAACTC
Statistics
Matches: 148, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
90 9 0.06
91 17 0.11
92 27 0.18
93 14 0.09
94 60 0.41
95 14 0.09
96 7 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (93 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCA
GACATGTCTTACACTGACACATCTCATA
Found at i:68083838 original size:85 final size:85
Alignment explanation
Indices: 68083695--68083874 Score: 342
Period size: 85 Copynumber: 2.1 Consensus size: 85
68083685 GGCCGGCCAT
68083695 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
68083760 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
68083780 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
68083845 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
* *
68083865 GGGAATGGGT
1 GAGCATGGGT
68083875 AATAAAATAT
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.27
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:68086211 original size:47 final size:47
Alignment explanation
Indices: 68086124--68086439 Score: 497
Period size: 47 Copynumber: 6.6 Consensus size: 47
68086114 GTATATTTGA
68086124 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* *
68086173 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
68086220 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
68086269 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
68086316 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * * *
68086363 ATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
68086410 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
68086440 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
47 190 0.76
49 59 0.24
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:68086234 original size:96 final size:96
Alignment explanation
Indices: 68086124--68086439 Score: 532
Period size: 96 Copynumber: 3.3 Consensus size: 96
68086114 GTATATTTGA
68086124 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
68086189 ATATATGTGATAAGGCCGAATGGCCAATGTG
66 ATATATGTGATAAGGCCGAATGGCCAATGTG
*
68086220 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
68086285 ATATATGTGATAAGGCCTAATGGCCGATGTG
66 ATATATGTGATAAGGCCGAATGGCCAATGTG
68086316 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * *
68086379 ATATATGTGACAGGGCCGAGTGGCCAACGTG
66 ATATATGTGATAAGGCCGAATGGCCAATGTG
*
68086410 ATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGAATGTGAAAGTGTATATATATGTGATAAG
68086440 TCCCGAAGGG
Statistics
Matches: 207, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
94 96 0.46
95 1 0.00
96 110 0.53
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGATAAGGCCGAATGGCCAATGTG
Found at i:68086384 original size:143 final size:141
Alignment explanation
Indices: 68086124--68086439 Score: 497
Period size: 143 Copynumber: 2.2 Consensus size: 141
68086114 GTATATTTGA
68086124 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
68086189 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
64 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGACAAGGC
* * *
68086254 CTAATAGCCGATGTG
127 CGAATAGCCAACGTG
68086269 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * *
68086334 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAG
66 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAA
*
68086399 TGGCCAACGTG
131 TAGCCAACGTG
* *
68086410 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
68086440 TCCCGAAGGG
Statistics
Matches: 160, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
141 53 0.33
143 92 0.57
145 15 0.09
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (141 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAA
TAGCCAACGTG
Found at i:68086608 original size:37 final size:37
Alignment explanation
Indices: 68086558--68086702 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
68086548 CCGAGCTCTA
* *
68086558 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
68086595 AAGACCCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
68086632 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* ** *
68086669 AAGACCCGATAACTTTGTGTGGAGATTTCGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
68086703 AGCTAAAGGT
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:68088355 original size:37 final size:37
Alignment explanation
Indices: 68088294--68088439 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
68088284 TACGTATGAT
* *
68088294 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
68088329 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
68088366 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
68088403 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
68088440 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:68088456 original size:46 final size:46
Alignment explanation
Indices: 68088403--68088625 Score: 248
Period size: 52 Copynumber: 4.6 Consensus size: 46
68088393 TAAGTGTAGC
* *
68088403 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* * * *
68088449 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAACCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
68088495 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
* *
68088547 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
*
68088599 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
68088626 AGTACTCAAA
Statistics
Matches: 159, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
46 67 0.42
49 1 0.01
50 1 0.01
51 3 0.02
52 87 0.55
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTAT
Found at i:68088522 original size:52 final size:52
Alignment explanation
Indices: 68088446--68088619 Score: 258
Period size: 52 Copynumber: 3.3 Consensus size: 52
68088436 TAGCTAAAGC
* * * *
68088446 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAACCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
68088499 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
* ** *
68088551 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
68088603 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
68088620 ATCAGAAGTA
Statistics
Matches: 111, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
52 93 0.84
53 18 0.16
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
Found at i:68088591 original size:98 final size:98
Alignment explanation
Indices: 68088402--68088625 Score: 251
Period size: 98 Copynumber: 2.3 Consensus size: 98
68088392 ATAAGTGTAG
* * * *
68088402 CCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
*
68088467 TTGATCAGATAAGTATAACCGAAGCTATCA-CTTA
66 TTGATCAGATAAGTATAACCGAAGCTA-AAGC-TA
* * *
68088501 TCACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT-CCAC
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
* ** *
68088564 TTG-TCACTTGATCAG-ATAAGTGTAGCTAAAGCTA
66 TTGATCA---GATAAGTATAACCGAAGCTAAAGCTA
*
68088598 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
68088626 AGTACTCAAA
Statistics
Matches: 105, Mismatches: 15, Indels: 11
0.80 0.11 0.08
Matches are distributed among these distances:
96 3 0.03
97 17 0.16
98 71 0.68
99 14 0.13
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (98 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGCCAC
TTGATCAGATAAGTATAACCGAAGCTAAAGCTA
Found at i:68092251 original size:50 final size:50
Alignment explanation
Indices: 68092197--68092310 Score: 149
Period size: 50 Copynumber: 2.3 Consensus size: 50
68092187 GTTTCGATAC
*
68092197 GTGATACCATGTAAAACCATGTCGGGGACATGGCATTAGCATCAATATGT
1 GTGATACCATGTAAAACCATGTCCGGGACATGGCATTAGCATCAATATGT
* * * * * *
68092247 GTGATCCCATGTTAGACCATGTCCGTGACATGGCATTGGCATCGATATGT
1 GTGATACCATGTAAAACCATGTCCGGGACATGGCATTAGCATCAATATGT
68092297 GTGA-ACCCATGTAA
1 GTGATA-CCATGTAA
68092311 GAGCACATCT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (50 bp):
GTGATACCATGTAAAACCATGTCCGGGACATGGCATTAGCATCAATATGT
Found at i:68092330 original size:50 final size:50
Alignment explanation
Indices: 68092203--68092339 Score: 143
Period size: 50 Copynumber: 2.7 Consensus size: 50
68092193 ATACGTGATA
* * * * * *
68092203 CCATGTAAAACCATGTCGGGGACATGGCATTAGCATCAATATGTGTGATC
1 CCATGTAAGACCATCTCAGTGACATGGCATTGGCATCAATATGTGTGAAC
* * * *
68092253 CCATGTTAGACCATGTCCGTGACATGGCATTGGCATCGATATGTGTGAAC
1 CCATGTAAGACCATCTCAGTGACATGGCATTGGCATCAATATGTGTGAAC
*
68092303 CCATGTAAGAGCACATCT-AG-GATATGGCATTGGCATC
1 CCATGTAAGA-C-CATCTCAGTGACATGGCATTGGCATC
68092340 TCACTATGTG
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
50 68 0.92
51 2 0.03
52 4 0.05
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (50 bp):
CCATGTAAGACCATCTCAGTGACATGGCATTGGCATCAATATGTGTGAAC
Found at i:68095228 original size:46 final size:45
Alignment explanation
Indices: 68095134--68095447 Score: 206
Period size: 46 Copynumber: 6.8 Consensus size: 45
68095124 GATATGTGCA
* *** * *
68095134 CCAGCGTAAGACATGTCTGGGACATGCATCGGCCACATAGTGAAAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGA-TGAGAG
*
68095180 CCAGTGTAAGACATGTCTGGGACATGCATCGGCTTTGAGACGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGC-TTGAGATGAGAG
* * ** *
68095226 CCAGTGTAAGACATTTATTAGACATGCATCGGCCTCGAG-T----G
1 CCAGTGTAAGACATGTCTGGGACATGCATCGG-CTTGAGATGAGAG
* * * * *
68095267 CTAGTGGAAGACCATGTCTGGGACATAGCATCAGCATTGAGAAGAGTG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TTGAGATGAGAG
* * * * * * * *
68095315 CTAGTGTAAGACGTGTCTAGGACACGCATCGACCTCGATAATGATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCG-GCTTGA-GATGAGAG
* * *
68095362 TCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTGAG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTGAGATGAGAG
* * *
68095409 CTAGTGTAAGACTATGTTTGGGACATGGCATTGGCTTGA
1 CCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCTTGA
68095448 CATGTGTTAG
Statistics
Matches: 205, Mismatches: 48, Indels: 29
0.73 0.17 0.10
Matches are distributed among these distances:
41 10 0.05
42 11 0.05
43 10 0.05
46 77 0.38
47 65 0.32
48 26 0.13
49 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGATGAGAG
Found at i:68095344 original size:89 final size:88
Alignment explanation
Indices: 68095182--68095425 Score: 226
Period size: 89 Copynumber: 2.7 Consensus size: 88
68095172 AGTGAAAGCC
* * * * * *
68095182 AGTGTAAGA-CATGTCTGGGACATGCATCGGCTTTGAGACGAGAGCCAGTGTAAGACATTTATTA
1 AGTGGAAGACCATGTCTGGGACATGCATC-GCATTGAGAAGAGAGCTAGTGTAAGACATGTACTA
* * * *
68095246 GACATGCATCGGCCTCG-AGTGCT
65 GACACGCATCGACCTCGAAATGAT
* *
68095269 AGTGGAAGACCATGTCTGGGACATAGCATCAGCATTGAGAAGAGTGCTAGTGTAAGACGTGT-CT
1 AGTGGAAGACCATGTCTGGGACAT-GCATC-GCATTGAGAAGAGAGCTAGTGTAAGACATGTACT
68095333 AGGACACGCATCGACCTCGATAATGAT
64 A-GACACGCATCGACCTCGA-AATGAT
* *
68095360 AGTCAGTGTAAGACCATGTCTGGGACATGGCATCG-ACTTGAGATGTGAGCTAGTGTAAGACTAT
1 AGT--G-G-AAGACCATGTCTGGGACAT-GCATCGCA-TTGAGAAGAGAGCTAGTGTAAGAC-AT
68095424 GT
59 GT
68095426 TTGGGACATG
Statistics
Matches: 128, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
87 8 0.06
88 16 0.12
89 45 0.35
91 7 0.05
93 2 0.02
94 23 0.18
95 27 0.21
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (88 bp):
AGTGGAAGACCATGTCTGGGACATGCATCGCATTGAGAAGAGAGCTAGTGTAAGACATGTACTAG
ACACGCATCGACCTCGAAATGAT
Found at i:68095415 original size:47 final size:46
Alignment explanation
Indices: 68095182--68095487 Score: 172
Period size: 47 Copynumber: 6.7 Consensus size: 46
68095172 AGTGAAAGCC
* * * *
68095182 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTTGAGACGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGATG-TAGCT
* * ** * * *
68095228 AGTGTAAGA-CATTTATTAGACAT-GCATCGGCCT-CGA-GT-GCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTAGCT
* * *
68095269 AGTGGAAGACCATGTCTGGGACATAGCATC-AGCATTGAGAAG-AGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TTGAGATGTA--GCT
* * * * *
68095317 AGTGTAAGA-CGTGTCTAGGACA-CGCATCGACCTCGATAATGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTTGA-GATG-TAGCT
68095363 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTGAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGT-AGCT
* * * * * *
68095411 AGTGTAAGACTATGTTTGGGACATGGCATTGGCTTGACATGT-GTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTAGCT
* *
68095456 AGTGTAAAACC-TGTCTAGGACATGGCATCGAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC
68095488 ACAGATGGAT
Statistics
Matches: 201, Mismatches: 41, Indels: 38
0.72 0.15 0.14
Matches are distributed among these distances:
41 10 0.05
42 10 0.05
43 7 0.03
44 20 0.10
45 14 0.07
46 38 0.19
47 67 0.33
48 27 0.13
49 8 0.04
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTAGCT
Found at i:68098981 original size:50 final size:50
Alignment explanation
Indices: 68098913--68099054 Score: 230
Period size: 50 Copynumber: 2.8 Consensus size: 50
68098903 ACATAGTGAG
* * * *
68098913 ATGCCAATGCCATATCCCAGATATGGTCTTACATGTGTTCACACATATCA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCA
*
68098963 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCA
*
68099013 ATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCAC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCAC
68099055 GTATTGAAAC
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 86 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACACATATCA
Found at i:68099573 original size:43 final size:43
Alignment explanation
Indices: 68099512--68099675 Score: 172
Period size: 43 Copynumber: 3.8 Consensus size: 43
68099502 TCGTACAATG
* * *
68099512 CAATATCCTAGATATGGTCTTACATGTTATCACATATCGATGC
1 CAATGTCCCAGATATGGTCTTACATGTAATCACATATCGATGC
* * * *
68099555 CAATAG-CCCAGCTATGGTCTTACATGAAATTA-ATTAACGATGC
1 CAAT-GTCCCAGATATGGTCTTACATGTAATCACA-TATCGATGC
*
68099598 CAATGTCCTAGATATGGTCTTACATGTAATCACATAAT-GATGC
1 CAATGTCCCAGATATGGTCTTACATGTAATCACAT-ATCGATGC
* * **
68099641 CAATGTCCCAGACATGGTGTTACACATAATCACAT
1 CAATGTCCCAGATATGGTCTTACATGTAATCACAT
68099676 CTCATTAATA
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
42 2 0.02
43 95 0.96
44 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.30
Consensus pattern (43 bp):
CAATGTCCCAGATATGGTCTTACATGTAATCACATATCGATGC
Found at i:68104210 original size:13 final size:13
Alignment explanation
Indices: 68104192--68104224 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
68104182 TCGACCGTGT
68104192 GGCCATGGCACAC
1 GGCCATGGCACAC
68104205 GGCCATGGCACAC
1 GGCCATGGCACAC
*
68104218 GGGCATG
1 GGCCATG
68104225 TATACCCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.21, C:0.33, G:0.36, T:0.09
Consensus pattern (13 bp):
GGCCATGGCACAC
Found at i:68109820 original size:29 final size:29
Alignment explanation
Indices: 68109760--68109849 Score: 114
Period size: 29 Copynumber: 3.1 Consensus size: 29
68109750 CACATACCTG
68109760 TATATAGCCCA-CTAGGCCC-AATCACATT
1 TATATAGCCCATC-AGGCCCAAATCACATT
* *
68109788 TATAT-GTCCCATTAGGTCCAAATCACATT
1 TATATAG-CCCATCAGGCCCAAATCACATT
*
68109817 TATATAGCCCATCAGGCCCAATTCACATT
1 TATATAGCCCATCAGGCCCAAATCACATT
68109846 TATA
1 TATA
68109850 GTCATGCTCA
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
27 1 0.02
28 14 0.26
29 37 0.70
30 1 0.02
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (29 bp):
TATATAGCCCATCAGGCCCAAATCACATT
Found at i:68118573 original size:52 final size:51
Alignment explanation
Indices: 68118453--68118600 Score: 219
Period size: 52 Copynumber: 2.9 Consensus size: 51
68118443 ACTAGTGACT
* *
68118453 CAAGTGTTGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
* *
68118502 CAAGGGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* *
68118554 CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAATAAGGTAGCTTTG
1 CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTG
68118601 ACTACAAGGG
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
49 32 0.36
51 18 0.20
52 39 0.44
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (51 bp):
CAAGTGTCGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:68118629 original size:51 final size:52
Alignment explanation
Indices: 68118461--68118621 Score: 206
Period size: 52 Copynumber: 3.2 Consensus size: 52
68118451 CTCAAGTGTT
* *
68118461 GTACTATGTGAAGGCCACTTTGAGAAG--AGATAGC-TTGGTCACAAGGGTG
1 GTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGCTCACAAGGGTG
* * *
68118510 GTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCACAAGTGTC
1 GTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGCTCACAAGGGTG
* * *
68118562 GTACTATGTGAAGGCCACTTTGTGAA-TAAGGTAGCTTTGACT-ACAAGGGAG
1 GTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTG-CTCACAAGGGTG
68118613 GTACTATGT
1 GTACTATGT
68118622 TCTGGCCATC
Statistics
Matches: 99, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 26 0.26
51 33 0.33
52 40 0.40
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.28
Consensus pattern (52 bp):
GTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGCTCACAAGGGTG
Found at i:68125182 original size:51 final size:50
Alignment explanation
Indices: 68125044--68125183 Score: 149
Period size: 49 Copynumber: 2.8 Consensus size: 50
68125034 AAGGTGGAAG
*
68125044 CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCAACAAAATTTAAT
1 CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCCACAAAATTTAAT
* * * * * * *
68125094 -AGTGGCGGTATATTTGCATATCAATGGTGGATCGTCCATAAAAGTGTT-AT
1 CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCCACAAAA-T-TTAAT
* * *
68125144 CAGTGGCAATTTATCTGCAAATCAGTGGTGGCTTGTCCAC
1 CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCCAC
68125184 TAATGGTGTT
Statistics
Matches: 70, Mismatches: 17, Indels: 5
0.76 0.18 0.05
Matches are distributed among these distances:
49 35 0.50
50 3 0.04
51 32 0.46
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (50 bp):
CAGTGGCAGTATATATGCAAATCAGTGGTGGCTTGTCCACAAAATTTAAT
Found at i:68126738 original size:16 final size:16
Alignment explanation
Indices: 68126699--68126731 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
68126689 AGTGAATAAG
68126699 TTACCTCATTTTGTTC
1 TTACCTCATTTTGTTC
68126715 TTACCTCATTTTGTTC
1 TTACCTCATTTTGTTC
68126731 T
1 T
68126732 AGCCTCAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.58
Consensus pattern (16 bp):
TTACCTCATTTTGTTC
Done.