Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 202 of 345
Found at i:68564986 original size:40 final size:40
Alignment explanation
Indices: 68564749--68564972 Score: 278
Period size: 40 Copynumber: 5.6 Consensus size: 40
68564739 CGAATGATGT
* * * *
68564749 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
68564789 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
* *
68564829 CCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68564867 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
68564908 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68564948 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
68564973 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:68564994 original size:119 final size:119
Alignment explanation
Indices: 68564748--68565005 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
68564738 TCGAATGATG
* **
68564748 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATTCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
* ***
68564813 GTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAA
66 GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * *
68564867 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* * *
68564930 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
68564987 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
68565006 TACGTGATTG
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 85 0.72
120 30 0.25
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:68572834 original size:28 final size:29
Alignment explanation
Indices: 68572723--68572834 Score: 131
Period size: 29 Copynumber: 3.9 Consensus size: 29
68572713 GTGAGCATGA
* *
68572723 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
68572751 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
68572780 ATAT-ACAGGTGATTTGGGCCTACTGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
68572809 ATATGAATATGA-TTGGGCTTAATGGG
1 ATATGAATGTGATTTGGGCCTAATGGG
68572835 TCACATACAG
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 24 0.33
29 47 0.65
30 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:68572847 original size:57 final size:58
Alignment explanation
Indices: 68572736--68572847 Score: 156
Period size: 57 Copynumber: 1.9 Consensus size: 58
68572726 TGAATGTGAC
* *
68572736 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCACATACAGGTGATT
* * *
68572794 TGGGCCT-ACTGGGCCATATGAATATGA-TTGGGCTTAATGGGTCACATACAGGTG
1 TGGGCCTAAC-GGGCCATATAAATATGATTTGGGCCTAATGGGCCACATACAGGTG
68572848 TGTGAAATTG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 26 0.54
58 22 0.46
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCACATACAGGTGATT
Found at i:68581017 original size:13 final size:13
Alignment explanation
Indices: 68580996--68581045 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
68580986 TTTAAACAAA
*
68580996 ACTTGTCAAAAAC
1 ACTTTTCAAAAAC
* *
68581009 ACTTCTCAAAAGC
1 ACTTTTCAAAAAC
68581022 ACTTTTCAAAAAC
1 ACTTTTCAAAAAC
68581035 ACTTTTCAAAA
1 ACTTTTCAAAA
68581046 GCAATTGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.44, C:0.24, G:0.04, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAAC
Found at i:68581030 original size:26 final size:26
Alignment explanation
Indices: 68580996--68581053 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
68580986 TTTAAACAAA
68580996 ACTTGTCAAAAACACTTCTCAAAAGC
1 ACTTGTCAAAAACACTTCTCAAAAGC
* *
68581022 ACTTTTCAAAAACACTTTTCAAAAGC
1 ACTTGTCAAAAACACTTCTCAAAAGC
*
68581048 AATTGT
1 ACTTGT
68581054 AAACTAGCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (26 bp):
ACTTGTCAAAAACACTTCTCAAAAGC
Found at i:68586497 original size:39 final size:39
Alignment explanation
Indices: 68586438--68586574 Score: 184
Period size: 39 Copynumber: 3.5 Consensus size: 39
68586428 TAAGCCTTCG
* **
68586438 GGACTTTAAGCCCGGATATATTTCCAGCACGTAGCCTGC
1 GGACTTTAAGTCCGGATATATTTCCAGCATATAGCCTGC
* * * * *
68586477 GGGCCTAAAGTCCGGATATATTTCCCGCATATAGCCTGT
1 GGACTTTAAGTCCGGATATATTTCCAGCATATAGCCTGC
* *
68586516 AGACTTTAAGTCCGGATATATTTCCTGCATATAGCCTGC
1 GGACTTTAAGTCCGGATATATTTCCAGCATATAGCCTGC
68586555 GGACTTTAAGTCCGGATATA
1 GGACTTTAAGTCCGGATATA
68586575 ATTTTCAAAT
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (39 bp):
GGACTTTAAGTCCGGATATATTTCCAGCATATAGCCTGC
Found at i:68590039 original size:6 final size:6
Alignment explanation
Indices: 68590028--68590052 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
68590018 GAAATGATGT
68590028 AAAGGA AAAGGA AAAGGA AAAGGA A
1 AAAGGA AAAGGA AAAGGA AAAGGA A
68590053 TGGTTTCGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:68591255 original size:140 final size:140
Alignment explanation
Indices: 68590985--68591273 Score: 409
Period size: 140 Copynumber: 2.1 Consensus size: 140
68590975 TGTCTCGGCT
* *
68590985 GTGTGTCCCGTGTAGGTTTTAAAGGTTTCTTTTTGAAAGTTACATGACCTAGCACATGGCCTGGC
1 GTGTGTCCCCTGTAGGTTTTAAAGGTTTCTTTTTGAAAGTTACACGACCTAGCACATGGCCTGGC
* * * *
68591050 ACATGGGCGTGTGGCTTGGCCATGTGACCCAAGTCAAAGAACTACATAGGCACAGACACACGCTG
66 ACATAGGCGTGTGGCTTGGCCATGTGACACAAGTCAAAGAACTACAGAGGCACAAACACACGCTG
* *
68591115 GGACATGGTC
131 GGACATAGCC
*
68591125 GTGTGTCCCCTGTAGGTTTTAAA-GTTTGCTTTTTGAAAGTTACACGACCTAGTACATGGCCTGG
1 GTGTGTCCCCTGTAGGTTTTAAAGGTTT-CTTTTTGAAAGTTACACGACCTAGCACATGGCCTGG
* * ** * * **
68591189 CACATAGGTGTGTGGCTTGGCCATGTGACATAAGTCAAAGAGTTACAGGGGCAGAAACACGGGCT
65 CACATAGGCGTGTGGCTTGGCCATGTGACACAAGTCAAAGAACTACAGAGGCACAAACACACGCT
68591254 GGGACATAGCC
130 GGGACATAGCC
68591265 GTGTGTCCC
1 GTGTGTCCC
68591274 TATTTTGAGT
Statistics
Matches: 131, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
139 4 0.03
140 127 0.97
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (140 bp):
GTGTGTCCCCTGTAGGTTTTAAAGGTTTCTTTTTGAAAGTTACACGACCTAGCACATGGCCTGGC
ACATAGGCGTGTGGCTTGGCCATGTGACACAAGTCAAAGAACTACAGAGGCACAAACACACGCTG
GGACATAGCC
Found at i:68592441 original size:23 final size:22
Alignment explanation
Indices: 68592384--68592442 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
68592374 AAAAGCTATC
*
68592384 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
*
68592405 TACAGAATCGTATCTTCTAAAGAT
1 TACA-AATCATATCTTCT-AAGAT
*
68592429 TACATATCATATCT
1 TACAAATCATATCT
68592443 AGGATTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 4 0.13
22 7 0.23
23 11 0.35
24 9 0.29
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:68593243 original size:34 final size:34
Alignment explanation
Indices: 68593205--68593273 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
68593195 GTCTGATGAG
* * *
68593205 ATAGCTCATTGCCATATGCTGGCATGCATGAACA
1 ATAGCTCATTGCAATATGCTAGCAAGCATGAACA
*
68593239 ATAGCTCATTGCAATATGCTAGCAAGCGTGAACA
1 ATAGCTCATTGCAATATGCTAGCAAGCATGAACA
68593273 A
1 A
68593274 CACTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (34 bp):
ATAGCTCATTGCAATATGCTAGCAAGCATGAACA
Found at i:68597091 original size:39 final size:39
Alignment explanation
Indices: 68597048--68597178 Score: 217
Period size: 39 Copynumber: 3.4 Consensus size: 39
68597038 TATTCAGGAA
68597048 AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT
1 AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT
* **
68597087 AAGTCCCGAAGGCATTCATGCTGGTGTTATATCTAGGCT
1 AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT
* *
68597126 AAATCCCGAAGGCATTCGTGCTGGTGTTATAGCCGGGCT
1 AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT
68597165 AAGTCCCGAAGGCA
1 AAGTCCCGAAGGCA
68597179 ATTATGTTGG
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
AAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT
Found at i:68599071 original size:47 final size:47
Alignment explanation
Indices: 68599000--68599790 Score: 1240
Period size: 47 Copynumber: 16.6 Consensus size: 47
68598990 CCCTTCGGGA
* * * * * *
68599000 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68599047 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68599094 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68599141 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68599190 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68599237 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68599284 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68599333 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68599380 CTTATCACATATATACACTTCCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68599427 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68599476 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68599525 CTTATCACATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68599572 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68599619 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68599668 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68599715 CTTATCACATATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68599764 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
68599791 ATTCAAATAT
Statistics
Matches: 696, Mismatches: 38, Indels: 20
0.92 0.05 0.03
Matches are distributed among these distances:
47 425 0.61
49 271 0.39
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68599078 original size:25 final size:25
Alignment explanation
Indices: 68599050--68599128 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
68599040 ACTCGGCCCT
68599050 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
68599075 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
68599097 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
68599122 ATCACAT
1 ATCACAT
68599129 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:68599197 original size:96 final size:94
Alignment explanation
Indices: 68599000--68599790 Score: 1258
Period size: 96 Copynumber: 8.3 Consensus size: 94
68598990 CCCTTCGGGA
* * * * * * *
68599000 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
68599065 TTTCACATTCATCACATTGGCCATTCGGC
66 TTTCACATTCATCACATTGGCCATTAGGC
68599094 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
68599159 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
*
68599190 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* *
68599255 TTCCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATTGGCCATTAGGC
* *
68599284 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
68599349 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
* *
68599380 CTTATCACATATATACACTTCCACATTCGTCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
68599445 ACTTTCACATTCATCACATTGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
* *
68599476 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
68599541 ACTTCCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
68599572 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
68599637 ACTTTCACATTCATCACATTGGCCATTAGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
68599668 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
68599733 ACATTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATTGGCCATTAGGC
68599764 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
68599791 ATTCAAATAT
Statistics
Matches: 653, Mismatches: 34, Indels: 18
0.93 0.05 0.03
Matches are distributed among these distances:
94 180 0.28
96 430 0.66
98 43 0.07
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATTGGCCATTAGGC
Found at i:68599269 original size:143 final size:143
Alignment explanation
Indices: 68599000--68599790 Score: 1365
Period size: 143 Copynumber: 5.5 Consensus size: 143
68598990 CCCTTCGGGA
* * * *
68599000 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
68599063 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATCACA
68599128 TCGGCCATTAGGC
131 TCGGCCATTAGGC
68599141 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
68599206 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTCCACATTCATCACA
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATCACA
68599271 TCGGCCATTAGGC
131 TCGGCCATTAGGC
68599284 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* * *
68599349 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTCCACATTCGTCACA
66 ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATCACA
68599414 TCGGCCATTAGGC
131 TCGGCCATTAGGC
*
68599427 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
*
68599492 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTCCACATTCATCA
64 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATCA
68599557 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
* *
68599572 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATAT
*
68599635 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATCA
68599700 CATCGGCCATTAGGC
129 CATCGGCCATTAGGC
*
68599715 CTTATCACATATATATACACATTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
68599780 ACTTTCACATT
66 ACTTTCACATT
68599791 ATTCAAATAT
Statistics
Matches: 624, Mismatches: 20, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
141 10 0.02
142 1 0.00
143 479 0.77
145 134 0.21
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTCCACATTCATCACA
TCGGCCATTAGGC
Found at i:68606831 original size:30 final size:29
Alignment explanation
Indices: 68606773--68606831 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
68606763 TTCCCGAGCC
*
68606773 TAGGGGCAAAAGTGTAATTATGCAAAGTT
1 TAGGGGCAAAAGTGTAATTATCCAAAGTT
*
68606802 TAGGGGCAAAAGTGTAATTTTTCCAAAGTT
1 TAGGGGCAAAAGTGTAA-TTATCCAAAGTT
68606832 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (29 bp):
TAGGGGCAAAAGTGTAATTATCCAAAGTT
Found at i:68607307 original size:46 final size:46
Alignment explanation
Indices: 68607257--68607426 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
68607247 TTGAGCATCC
* *
68607257 GAACTCGTTGAGTTGAGACCGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
* * * * *
68607303 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCT
*
68607350 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
*
68607396 GAACTCATTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
68607427 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 57 0.55
47 28 0.27
48 3 0.03
50 6 0.06
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
Found at i:68607410 original size:93 final size:93
Alignment explanation
Indices: 68607251--68607421 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
68607241 GGATGGTTGA
* * *
68607251 GCATCCGAACTCGTTGAGTTGAGACCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGACCGAGTTCACTTATGGATGCAAACGCCTGAACTCATTGAGT
68607316 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68607344 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGACCGAGTTCACTTATGGATGCAAACGCCTGAACTCATTGAGT
68607409 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
68607422 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGACCGAGTTCACTTATGGATGCAAACGCCTGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68612637 original size:40 final size:40
Alignment explanation
Indices: 68612561--68612961 Score: 597
Period size: 40 Copynumber: 10.1 Consensus size: 40
68612551 CGAATACACG
* * * * *
68612561 TCACTAGCATGATTGCTCTTCGGGACCTAGTCCGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * ** * *
68612601 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
** *
68612641 TCACTAGCACGAATGCTCTTCGAAACTTAGTCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* * *
68612681 TCACTAGCAAGAATGCTCTTCGAGACTTAGCTCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
68612721 TCACTAGCACAAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
68612761 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
68612801 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
68612841 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
*
68612881 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
68612921 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT-CA
1 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
68612960 TC
1 TC
68612962 GTCGAGACCT
Statistics
Matches: 330, Mismatches: 31, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
39 4 0.01
40 326 0.99
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:68613057 original size:38 final size:38
Alignment explanation
Indices: 68613015--68613089 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
68613005 GAATTTTAAT
*
68613015 CCGGACATAATCTCTGT-ACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCT-TCACATAGCCAGCGGGTCTTTAC
* *
68613053 CCGGACATAATCTCTTCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTA
68613090 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTTCACATAGCCAGCGGGTCTTTAC
Found at i:68615583 original size:47 final size:47
Alignment explanation
Indices: 68615520--68615865 Score: 482
Period size: 47 Copynumber: 7.3 Consensus size: 47
68615510 CCCTTCGGGA
* * *
68615520 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
68615567 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* * *
68615614 CTTATCTCATATATGCATGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68615661 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68615708 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68615755 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
68615802 CTTATCTCGCATATATATACT-TTCACATTCATCACATTGGCCACTCGGC
1 CTTA--TCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
68615851 CCTATCACATATATA
1 CTTATCACATATATA
68615866 TACTTGTACA
Statistics
Matches: 277, Mismatches: 18, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 236 0.85
49 39 0.14
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:68620440 original size:23 final size:23
Alignment explanation
Indices: 68620397--68620440 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
68620387 GAAAGGCTCC
* *
68620397 AAGAGGGAAAAGCAGTTAAGAGT
1 AAGAGGGAAAAGAAGTAAAGAGT
68620420 AAGAGGGAGAAAGAAG-AAAGA
1 AAGAGGGA-AAAGAAGTAAAGA
68620441 TTAAAGAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 12 0.67
24 6 0.33
ACGTcount: A:0.55, C:0.02, G:0.36, T:0.07
Consensus pattern (23 bp):
AAGAGGGAAAAGAAGTAAAGAGT
Found at i:68623570 original size:24 final size:24
Alignment explanation
Indices: 68623537--68623620 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
68623527 CTGGAGGCCT
68623537 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
* *
68623561 AGCCCGTTTTGATAAACTGGGGCAC
1 AGCCC-TTTTAATAAACTGGGGCAA
** *
68623586 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
68623611 AGCCCTTTTA
1 AGCCCTTTTA
68623621 GCACTTCCTC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
23 1 0.02
24 14 0.27
25 37 0.71
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:68623578 original size:25 final size:25
Alignment explanation
Indices: 68623550--68623619 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
68623540 CTCTTTTAAT
68623550 AACTGGGGCAAAGCCCGTTTT-GATA
1 AACTGGGGCAAAGCCC-TTTTCGATA
* *
68623575 AACTGGGGCACAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
68623600 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
68623620 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 4 0.10
25 37 0.90
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:68623671 original size:16 final size:16
Alignment explanation
Indices: 68623650--68623680 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
68623640 AACCTAACCC
*
68623650 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
68623666 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
68623681 CCCATAGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:68624463 original size:27 final size:26
Alignment explanation
Indices: 68624428--68624505 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
68624418 GGGCATATTC
68624428 GTCATTTTACCATATAGGGGTATTACG
1 GTCATTTTACC-TATAGGGGTATTACG
* *
68624455 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTA-CCTATAGGGG-TATTACG
*
68624482 GTCTTTTTACCTATTAGGGGTATT
1 GTCATTTTACCTA-TAGGGGTATT
68624506 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
26 5 0.12
27 34 0.81
28 3 0.07
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (26 bp):
GTCATTTTACCTATAGGGGTATTACG
Found at i:68624584 original size:27 final size:27
Alignment explanation
Indices: 68624550--68624631 Score: 80
Period size: 29 Copynumber: 3.0 Consensus size: 27
68624540 ATCTACAAAT
68624550 CAAGGGTATTTCAGTAATTTTGT-AAA
1 CAAGGGTATTTCAGTAATTTTGTAAAA
*
68624576 CAAATGGTATTTCTA-TAATTTT-TAGAAA
1 C-AAGGGTATTTC-AGTAATTTTGTA-AAA
*
68624604 GTCAAGGGTATTTCTGTAATTTTGTAAA
1 --CAAGGGTATTTCAGTAATTTTGTAAA
68624632 TTAGAGGTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
26 2 0.04
27 17 0.38
28 4 0.09
29 19 0.42
30 3 0.07
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAA
Found at i:68624649 original size:27 final size:27
Alignment explanation
Indices: 68624610--68624732 Score: 133
Period size: 27 Copynumber: 4.6 Consensus size: 27
68624600 GAAAGTCAAG
** *
68624610 GGTATTTCT-GTAATTTTGTAAATTAGA
1 GGTATTT-TGGTAATTTTACAAACTAGA
*
68624637 GGTATTTTGGTAATTTTACAAA-TTGA
1 GGTATTTTGGTAATTTTACAAACTAGA
* * * *
68624663 GGGTATTTCGGTAATTTCACAAACCAGT
1 -GGTATTTTGGTAATTTTACAAACTAGA
*
68624691 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGA
68624718 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
68624733 CTATCCTACA
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.05
27 76 0.94
28 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGA
Found at i:68624651 original size:56 final size:54
Alignment explanation
Indices: 68624543--68624712 Score: 166
Period size: 54 Copynumber: 3.1 Consensus size: 54
68624533 TTGGTAAATC
* *
68624543 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACAAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAACAGA-GGTATTT-TGGTAATTTT
* * *
68624598 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATTAGAGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAA-CAGAGGTATTTTGGTAATTTT
** * *** *
68624653 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAA-CAGAGGTATTTTGGTAATTTT
68624707 TACAAA
1 TACAAA
68624713 CTAGGGGTAT
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
54 45 0.46
55 14 0.14
56 36 0.37
57 2 0.02
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACAGAGGTATTTTGGTAATTTT
Found at i:68624750 original size:27 final size:27
Alignment explanation
Indices: 68624639--68624759 Score: 97
Period size: 27 Copynumber: 4.5 Consensus size: 27
68624629 AAATTAGAGG
* *
68624639 TATTTTGGTAATTTTACAAATTGAGGG-
1 TATTTTGGTAATTCTACAAACT-AGGGA
* *
68624666 TATTTCGGTAATT-TCACAAACCAGTGG-
1 TATTTTGGTAATTCT-ACAAACTAG-GGA
* *
68624693 TATTTTGGTAATTTTACAAACTAGGGG
1 TATTTTGGTAATTCTACAAACTAGGGA
**
68624720 TATTTTGGTAATTCTATCCTAC-AGGGA
1 TATTTTGGTAATTCTA-CAAACTAGGGA
*
68624747 TATTTTAGTAATT
1 TATTTTGGTAATT
68624760 TCACAATTGA
Statistics
Matches: 79, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.06
27 70 0.89
28 4 0.05
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (27 bp):
TATTTTGGTAATTCTACAAACTAGGGA
Found at i:68624786 original size:26 final size:26
Alignment explanation
Indices: 68624754--68624831 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
68624744 GGATATTTTA
68624754 GTAATTT-CACAATTGAGGGTAAAACG
1 GTAATTTGCA-AATTGAGGGTAAAACG
* *
68624780 GTAATTTTGTAAATTGAGGGTAAAATG
1 GTAA-TTTGCAAATTGAGGGTAAAACG
* *
68624807 GTAATTTTGTAAATCGAGGGTAAAA
1 GTAA-TTTGCAAATTGAGGGTAAAA
68624832 TGATAATTCT
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
26 4 0.09
27 42 0.89
28 1 0.02
ACGTcount: A:0.38, C:0.05, G:0.24, T:0.32
Consensus pattern (26 bp):
GTAATTTGCAAATTGAGGGTAAAACG
Found at i:68624794 original size:27 final size:27
Alignment explanation
Indices: 68624768--68624855 Score: 131
Period size: 27 Copynumber: 3.3 Consensus size: 27
68624758 TTTCACAATT
* *
68624768 GAGGGTAAAACGGTAATTTTGTAAATT
1 GAGGGTAAAATGGTAATTTTGTAAATC
68624795 GAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAATGGTAATTTTGTAAATC
* * *
68624822 GAGGGTAAAATGATAATTCTATAAATC
1 GAGGGTAAAATGGTAATTTTGTAAATC
68624849 GAGGGTA
1 GAGGGTA
68624856 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.39, C:0.05, G:0.26, T:0.31
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTTTGTAAATC
Found at i:68624880 original size:54 final size:53
Alignment explanation
Indices: 68624754--68624880 Score: 130
Period size: 54 Copynumber: 2.4 Consensus size: 53
68624744 GGATATTTTA
* * * * *
68624754 GTAATTTCACAATTGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATG
1 GTAATTTTACAATTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
* * ***
68624807 GTAATTTTGTA-AATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTACTTTG
1 GTAA-TTT-TACAATTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
68624861 GTAATTTTACAAGTTGAGGG
1 GTAATTTTACAA-TTGAGGG
68624881 CATTTCAATA
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
52 2 0.03
53 9 0.15
54 47 0.80
55 1 0.02
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.34
Consensus pattern (53 bp):
GTAATTTTACAATTGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATG
Found at i:68627005 original size:29 final size:29
Alignment explanation
Indices: 68626932--68627075 Score: 91
Period size: 29 Copynumber: 5.1 Consensus size: 29
68626922 ATACATACAA
* * * *
68626932 ATGGCCCACTAGGCCCAA-TCTCATTAAT
1 ATGGCCCATTAGACCCAATTCACATTCAT
* * ***
68626960 ATGTCCCATCCAG-CCCAATTCGTGTTCAT
1 ATGGCCCAT-TAGACCCAATTCACATTCAT
68626989 ATGGCCCATTAGACCCAATTCACATTCAT
1 ATGGCCCATTAGACCCAATTCACATTCAT
* * * * *
68627018 ATGTCCCATTAGGCCC-AGTCTCATTTAT
1 ATGGCCCATTAGACCCAATTCACATTCAT
* *
68627046 ATGGCCCATCT-GGCCCAAATCACATT-AT
1 ATGGCCCAT-TAGACCCAATTCACATTCAT
68627074 AT
1 AT
68627076 TCATGCTCAC
Statistics
Matches: 91, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
28 40 0.44
29 51 0.56
ACGTcount: A:0.26, C:0.31, G:0.13, T:0.29
Consensus pattern (29 bp):
ATGGCCCATTAGACCCAATTCACATTCAT
Found at i:68627073 original size:28 final size:28
Alignment explanation
Indices: 68626987--68627075 Score: 92
Period size: 28 Copynumber: 3.1 Consensus size: 28
68626977 ATTCGTGTTC
* *
68626987 ATATGGCCCATTAGACCCAATTCACATT
1 ATATGGCCCATTAGGCCCAAATCACATT
* * *
68627015 CATATGTCCCATTAGGCCC-AGTCTCATTT
1 -ATATGGCCCATTAGGCCCAAATCACA-TT
68627044 ATATGGCCCATCT-GGCCCAAATCACATT
1 ATATGGCCCAT-TAGGCCCAAATCACATT
68627072 ATAT
1 ATAT
68627076 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
28 26 0.52
29 24 0.48
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.30
Consensus pattern (28 bp):
ATATGGCCCATTAGGCCCAAATCACATT
Found at i:68627298 original size:16 final size:16
Alignment explanation
Indices: 68627277--68627321 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
68627267 AAACTTTCAG
68627277 CTTTTCGGCATTTTGA
1 CTTTTCGGCATTTTGA
** *
68627293 CTTTTCAACATTTTGG
1 CTTTTCGGCATTTTGA
*
68627309 CTTTTCGGGATTT
1 CTTTTCGGCATTT
68627322 ACCGATCTAC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.13, C:0.18, G:0.18, T:0.51
Consensus pattern (16 bp):
CTTTTCGGCATTTTGA
Found at i:68634777 original size:51 final size:50
Alignment explanation
Indices: 68634603--68634842 Score: 266
Period size: 51 Copynumber: 4.8 Consensus size: 50
68634593 GTAGCCAAAC
* * * *
68634603 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAAT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAT
* * * * *
68634652 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAT
* * * *
68634702 TATCTGTTACACATAGTAGCCTGCACTTAGTACTACACACATGATCGAAGT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-T
* ** *
68634753 TATCGGGTGTGCATAGTAGCCTGCACATAGTACTACACACGTGATCGAAGT
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA-T
* * * *
68634804 TATCAGGTATGCATAATAGCTTGCAATTAGTACTACACA
1 TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA
68634843 TGCGACCTAG
Statistics
Matches: 164, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
49 39 0.24
50 47 0.29
51 78 0.48
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (50 bp):
TATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAT
Found at i:68634788 original size:101 final size:100
Alignment explanation
Indices: 68634603--68634842 Score: 284
Period size: 101 Copynumber: 2.4 Consensus size: 100
68634593 GTAGCCAAAC
** *
68634603 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAG
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACATAG
* *
68634668 TAGCCTGCACTTAGTACTACACACGTGACCTAA-T
66 TAGCCTGCACATAGTACTACACACGTGACCGAAGT
* * * * * ***
68634702 TATCTGTTACACATAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCGGGTGTGCAT
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCCGGTACACAT
*
68634767 AGTAGCCTGCACATAGTACTACACACGTGATCGAAGT
64 AGTAGCCTGCACATAGTACTACACACGTGACCGAAGT
* * * * *
68634804 TATCAGGTATGCATAATAGCTTGCAATTAGTACTACACA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA
68634843 TGCGACCTAG
Statistics
Matches: 117, Mismatches: 21, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
99 39 0.33
100 3 0.03
101 42 0.36
102 33 0.28
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (100 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCCGGTACACATAG
TAGCCTGCACATAGTACTACACACGTGACCGAAGT
Found at i:68634952 original size:67 final size:64
Alignment explanation
Indices: 68634838--68634995 Score: 167
Period size: 67 Copynumber: 2.4 Consensus size: 64
68634828 AATTAGTACT
* *
68634838 ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAG-ATC
1 ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTACACATAGCACC
* ** * *
68634901 ACCCATGCGACCTAGCTACATCATAATGTCTTGTAGCTCTCTTGTAC-ACATGATGTGCACTTAG
1 ACACATGCGACCTAGCTACAT-AT-A--TCCCGTAGCTCTCTTGT-CTACATGATGTACACATAG
68634965 CACC
61 CACC
* *
68634969 ATACATGTGACCTAGCTACATACTATC
1 ACACATGCGACCTAGCTACATA-TATC
68634996 TGTCTCATCC
Statistics
Matches: 78, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
63 20 0.26
64 2 0.03
65 3 0.04
67 31 0.40
68 22 0.28
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.29
Consensus pattern (64 bp):
ACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTCTACATGATGTACACATAGCACC
Found at i:68635690 original size:30 final size:30
Alignment explanation
Indices: 68635656--68635716 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
68635646 TCCTTAACTC
68635656 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * *
68635686 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
68635716 A
1 A
68635717 GGCCTCGGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:68646980 original size:46 final size:46
Alignment explanation
Indices: 68646842--68647015 Score: 147
Period size: 46 Copynumber: 3.7 Consensus size: 46
68646832 GGTCATTTGT
* *
68646842 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC-TCGAGAC
* * * * *
68646890 GAGTGCTAGTGTAAGGCATGTCTAGGACAT-GCATCGACCTCGAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCG-GCTCGAGAC
* * *
68646936 GTA-AGCCAGTGTAAGACATGTCTGGGAC-TTGCTTCGGCTACGAGAT
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCT-CGAGAC
* * * *
68646982 GATAGTCAGTGTTAGACCATGTTTGGGACATGGC
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACATGGC
68647016 TTCGACTTGA
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
45 4 0.04
46 56 0.54
47 26 0.25
48 17 0.17
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCTCGAGAC
Found at i:68647028 original size:47 final size:47
Alignment explanation
Indices: 68646937--68647056 Score: 129
Period size: 47 Copynumber: 2.6 Consensus size: 47
68646927 CCTCGAGACG
* * *
68646937 TAAGCCAGTGTAAGA-CATGTCTGGGACTTGCTTCGGCTACGAGATGA
1 TAAGCCAGTGTAAGACCATGTATGGGACTGGCTTCGACTACGAGAT-A
* * * *
68646984 T-AGTCAGTGTTAGACCATGTTTGGGACATGGCTTCGACT-TGAGATA
1 TAAGCCAGTGTAAGACCATGTATGGGAC-TGGCTTCGACTACGAGATA
*
68647030 TAAGCCAGTGTAAGACCGTGTATGGGA
1 TAAGCCAGTGTAAGACCATGTATGGGA
68647057 TACGGCATCG
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
46 13 0.22
47 38 0.63
48 9 0.15
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGCCAGTGTAAGACCATGTATGGGACTGGCTTCGACTACGAGATA
Found at i:68649366 original size:39 final size:39
Alignment explanation
Indices: 68649322--68649399 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
68649312 TCACAATTTG
68649322 AGTTGGAATTATTTTGTTGTTTTATTTAATGATATTTCA
1 AGTTGGAATTATTTTGTTGTTTTATTTAATGATATTTCA
68649361 AGTTGGAATTATTTTGTTGTTTTATTTAATGATATTTCA
1 AGTTGGAATTATTTTGTTGTTTTATTTAATGATATTTCA
68649400 CTCTTTATAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.03, G:0.15, T:0.56
Consensus pattern (39 bp):
AGTTGGAATTATTTTGTTGTTTTATTTAATGATATTTCA
Found at i:68650314 original size:85 final size:85
Alignment explanation
Indices: 68650171--68650342 Score: 335
Period size: 85 Copynumber: 2.0 Consensus size: 85
68650161 ATGGCATTTT
68650171 CACTTTTAACACATATGGATCACTTTTACACTTATGCATGTAAACATGCTCTCATAATCACATAT
1 CACTTTTAACACATATGGATCACTTTTACACTTATGCATGTAAACATGCTCTCATAATCACATAT
68650236 CACATAATAACCACTTTTAA
66 CACATAATAACCACTTTTAA
68650256 CACTTTTAACACATATGGATCACTTTTACACTTATGCATGTAAACATGCTCTCATAATCACATAT
1 CACTTTTAACACATATGGATCACTTTTACACTTATGCATGTAAACATGCTCTCATAATCACATAT
*
68650321 CACATAGTAACCACTTTTAA
66 CACATAATAACCACTTTTAA
68650341 CA
1 CA
68650343 TGTTAAAAAT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.34
Consensus pattern (85 bp):
CACTTTTAACACATATGGATCACTTTTACACTTATGCATGTAAACATGCTCTCATAATCACATAT
CACATAATAACCACTTTTAA
Found at i:68650951 original size:7 final size:7
Alignment explanation
Indices: 68650939--68650963 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
68650929 TATTAGTACG
68650939 ATAATAA
1 ATAATAA
68650946 ATAATAA
1 ATAATAA
68650953 ATAATAA
1 ATAATAA
68650960 ATAA
1 ATAA
68650964 AATATTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
ATAATAA
Found at i:68658469 original size:20 final size:20
Alignment explanation
Indices: 68658444--68658487 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
68658434 TTGTACGGGA
* * *
68658444 TTTGCACTTCGGTTCCTCTG
1 TTTGCACTACGGTGCCCCTG
68658464 TTTGCACTACGGTGCCCCTG
1 TTTGCACTACGGTGCCCCTG
68658484 TTTG
1 TTTG
68658488 TAGTTCAGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.07, C:0.30, G:0.23, T:0.41
Consensus pattern (20 bp):
TTTGCACTACGGTGCCCCTG
Found at i:68659785 original size:16 final size:15
Alignment explanation
Indices: 68659766--68659797 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
68659756 TCATCTTTGC
68659766 ACAAAATCATGCATCA
1 ACAAAATCATGC-TCA
68659782 ACAAAATCATGCTCA
1 ACAAAATCATGCTCA
68659797 A
1 A
68659798 AAATACTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (15 bp):
ACAAAATCATGCTCA
Found at i:68668290 original size:13 final size:13
Alignment explanation
Indices: 68668272--68668306 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
68668262 TTGGCACACG
68668272 CCCGTGTCCCTGT
1 CCCGTGTCCCTGT
68668285 CCCGTGTCCCTGT
1 CCCGTGTCCCTGT
68668298 CCCGTGTCC
1 CCCGTGTCC
68668307 TTCACAAAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.49, G:0.23, T:0.29
Consensus pattern (13 bp):
CCCGTGTCCCTGT
Found at i:68668294 original size:7 final size:7
Alignment explanation
Indices: 68668272--68668306 Score: 56
Period size: 7 Copynumber: 5.3 Consensus size: 7
68668262 TTGGCACACG
68668272 CCCGTGT
1 CCCGTGT
68668279 CCC-TGT
1 CCCGTGT
68668285 CCCGTGT
1 CCCGTGT
68668292 CCC-TGT
1 CCCGTGT
68668298 CCCGTGT
1 CCCGTGT
68668305 CC
1 CC
68668307 TTCACAAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.00, C:0.49, G:0.23, T:0.29
Consensus pattern (7 bp):
CCCGTGT
Found at i:68669418 original size:46 final size:46
Alignment explanation
Indices: 68669307--68669620 Score: 237
Period size: 46 Copynumber: 6.7 Consensus size: 46
68669297 GGTAGGATGA
* *
68669307 CGATGCCATGTCCCAGACGTGGTCTTACACTAG--CTCATC-CTGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTC-G-AGGC
* *
68669353 TGATGAATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGGC
* * * * * *
68669399 CGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGC
* *
68669445 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGC
* * * * * * **
68669493 TGATGCTTGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAATCC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGC
* * * * *
68669539 CAATGCCATGTCACAAACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGGC
* *
68669587 CGATGCTTGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTC
68669621 ACAATAACCC
Statistics
Matches: 207, Mismatches: 48, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 87 0.42
47 48 0.23
48 44 0.21
49 2 0.01
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGC
Found at i:68669498 original size:94 final size:94
Alignment explanation
Indices: 68669359--68669620 Score: 386
Period size: 94 Copynumber: 2.8 Consensus size: 94
68669349 TAGCTGATGA
* * * *
68669359 ATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCCGATGCATGTCCCAAACATGTC
1 ATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCTTGTCCCAGACATGTC
** *
68669421 TTACACTAGCTCTCGTCTCAATGTCGATGCC
64 TTACACTAGCTCTCGTCTCAATCCCAATGCC
* *
68669452 ATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCTTGTCCTAGACATGTCTT
1 ATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCTTGTCCCAGACATGTCTT
68669517 ACACTAGCTCTCGTCTCAATCCCAATGCC
66 ACACTAGCTCTCGTCTCAATCCCAATGCC
* *
68669546 ATGTCACAAACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCTTGTCCCAGACATGTCTT
1 ATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCTTGTCCCAGACATGTCTT
68669611 ACACTAGCTC
66 ACACTAGCTC
68669621 ACAATAACCC
Statistics
Matches: 153, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
93 13 0.08
94 138 0.90
95 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (94 bp):
ATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCTTGTCCCAGACATGTCTT
ACACTAGCTCTCGTCTCAATCCCAATGCC
Found at i:68669610 original size:140 final size:139
Alignment explanation
Indices: 68669307--68669620 Score: 354
Period size: 140 Copynumber: 2.3 Consensus size: 139
68669297 GGTAGGATGA
* **
68669307 CGATGCCATGTCCCAGACGTGGTCTTACACTAG--CTCATCCTGTAGCTGATGAATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGATGAATGTCCCAGAC
* * * * *
68669370 ATGTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTC
66 ATGTCTTACACTAGCTTACATCTCAAGCCCAATGCATGTCACAAACATGTCTTACACTAGCTCTC
*
68669435 GTCTCAATGT
131 G-ATCAATGT
* * ** *
68669445 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCTTGTCCTAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGATGAATGTCCCAGAC
* * *
68669510 ATGTCTTACACTAGCTCT-CGTCTCAATCCCAATGCCATGTCACAAACATGGTCTTACACTGGCT
66 ATGTCTTACACTAGCT-TACATCTCAAGCCCAATG-CATGTCACAAACAT-GTCTTACACTAGCT
68669574 CTC-AT-AATGT
128 CTCGATCAATGT
*
68669584 GGCCGATG-CTTGTCCCAGACAT-GTCTTACACTAGCTC
1 ---CGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
68669621 ACAATAACCC
Statistics
Matches: 149, Mismatches: 19, Indels: 14
0.82 0.10 0.08
Matches are distributed among these distances:
138 31 0.21
139 5 0.03
140 65 0.44
141 27 0.18
142 21 0.14
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (139 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTAGCTGATGAATGTCCCAGAC
ATGTCTTACACTAGCTTACATCTCAAGCCCAATGCATGTCACAAACATGTCTTACACTAGCTCTC
GATCAATGT
Found at i:68673818 original size:79 final size:81
Alignment explanation
Indices: 68673682--68673866 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
68673672 TTGAATGATG
*
68673682 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
68673746 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
68673761 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
68673823 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
68673841 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68673867 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:68673880 original size:40 final size:40
Alignment explanation
Indices: 68673683--68673866 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
68673673 TGAATGATGT
* * * *
68673683 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
68673723 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
68673763 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68673801 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68673842 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
68673867 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:68673888 original size:79 final size:79
Alignment explanation
Indices: 68673683--68673899 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
68673673 TGAATGATGT
** * * * **
68673683 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
68673746 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
68673763 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
68673828 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
68673842 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
68673900 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:68681535 original size:79 final size:81
Alignment explanation
Indices: 68681399--68681583 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
68681389 TTGAATGATG
*
68681399 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
68681463 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
68681478 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
68681540 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
68681558 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
68681584 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:68681597 original size:40 final size:40
Alignment explanation
Indices: 68681400--68681583 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
68681390 TGAATGATGT
* * * *
68681400 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
68681440 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
68681480 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68681518 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
68681559 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
68681584 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:68681605 original size:79 final size:79
Alignment explanation
Indices: 68681400--68681616 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
68681390 TGAATGATGT
** * * * **
68681400 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
68681463 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
68681480 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
68681545 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
68681559 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
68681617 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:68683200 original size:34 final size:34
Alignment explanation
Indices: 68683152--68683217 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
68683142 TGCATACTGT
* *
68683152 ACTGATACTGTTACTAAAATGGGCTCAGGCCCAG
1 ACTGATACTGTTACTAAAATGAGCTAAGGCCCAG
* *
68683186 ACTGCTACTGTTACTGAAATGAGCTAAGGCCC
1 ACTGATACTGTTACTAAAATGAGCTAAGGCCC
68683218 TAACTGAGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (34 bp):
ACTGATACTGTTACTAAAATGAGCTAAGGCCCAG
Found at i:68685096 original size:16 final size:16
Alignment explanation
Indices: 68685075--68685108 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
68685065 GGTAGAGGTA
68685075 TTGGAAGATCCAGTTC
1 TTGGAAGATCCAGTTC
*
68685091 TTGGAAGATCTAGTTC
1 TTGGAAGATCCAGTTC
68685107 TT
1 TT
68685109 TTGCAATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (16 bp):
TTGGAAGATCCAGTTC
Found at i:68687025 original size:29 final size:29
Alignment explanation
Indices: 68686993--68687050 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
68686983 AGAAAGAAAG
68686993 AATTTGGATTTAGATCGGGGGAAAAGTAA
1 AATTTGGATTTAGATCGGGGGAAAAGTAA
68687022 AATTTGGATTTAGATCGGGGGAAAAGTAA
1 AATTTGGATTTAGATCGGGGGAAAAGTAA
68687051 GGCTATCGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.03, G:0.31, T:0.28
Consensus pattern (29 bp):
AATTTGGATTTAGATCGGGGGAAAAGTAA
Found at i:68687354 original size:29 final size:28
Alignment explanation
Indices: 68687322--68687377 Score: 94
Period size: 29 Copynumber: 2.0 Consensus size: 28
68687312 GAGATAAACC
68687322 GATTTGGCTTCGGGCCATGCATATCAGTT
1 GATTTGGCTTCGGGCCATG-ATATCAGTT
*
68687351 GATTTGGCTTTGGGCCATGATATCAGT
1 GATTTGGCTTCGGGCCATGATATCAGT
68687378 ATTTTGGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.36
Consensus pattern (28 bp):
GATTTGGCTTCGGGCCATGATATCAGTT
Found at i:68693000 original size:29 final size:28
Alignment explanation
Indices: 68692954--68693013 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
68692944 TTTTAATTTA
*
68692954 TTTCACATTTCAACCCCTCAATTTACATT
1 TTTCACATTTCAACCCCT-AATATACATT
* *
68692983 TTTCACAATTT-AATCCCTAATATGCATT
1 TTTCAC-ATTTCAACCCCTAATATACATT
68693011 TTT
1 TTT
68693014 ACTCAAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 11 0.41
29 12 0.44
30 4 0.15
ACGTcount: A:0.28, C:0.25, G:0.02, T:0.45
Consensus pattern (28 bp):
TTTCACATTTCAACCCCTAATATACATT
Found at i:68698432 original size:20 final size:20
Alignment explanation
Indices: 68698407--68698446 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
68698397 CGTAAAATGA
*
68698407 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
68698427 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
68698447 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:68698436 original size:34 final size:35
Alignment explanation
Indices: 68698392--68698458 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
68698382 CAGTAAAATA
*
68698392 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
68698426 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
68698459 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:68698462 original size:14 final size:15
Alignment explanation
Indices: 68698386--68698462 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
68698376 AATTGCCAGT
* *
68698386 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
68698400 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
68698414 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
68698434 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
68698449 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
68698463 TGTTTGATAG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:68699183 original size:12 final size:12
Alignment explanation
Indices: 68699166--68699190 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
68699156 TTATTAAATG
68699166 AATTAAAAGCCA
1 AATTAAAAGCCA
68699178 AATTAAAAGCCA
1 AATTAAAAGCCA
68699190 A
1 A
68699191 TTTTTGTCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AATTAAAAGCCA
Found at i:68704497 original size:25 final size:25
Alignment explanation
Indices: 68704460--68704507 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
68704450 AATAATTTAT
*
68704460 ATTTTTATAATTTTTAAA-AGATTAA
1 ATTTTTACAA-TTTTAAAGAGATTAA
*
68704485 ATTTTTACCATTTTAAAGAGATT
1 ATTTTTACAATTTTAAAGAGATT
68704508 GAGGCTTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (25 bp):
ATTTTTACAATTTTAAAGAGATTAA
Found at i:68706256 original size:16 final size:18
Alignment explanation
Indices: 68706230--68706265 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
68706220 CTTCATGCTA
68706230 TTTATTTTTTAAA-ATTT
1 TTTATTTTTTAAATATTT
68706247 TTTA-TTTTTAAATATTT
1 TTTATTTTTTAAATATTT
68706264 TT
1 TT
68706266 ATAATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTTTAAATATTT
Found at i:68707264 original size:14 final size:17
Alignment explanation
Indices: 68707232--68707269 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
68707222 GATTACAAAG
68707232 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
68707249 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
68707263 TATATTA
1 TATATTA
68707270 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:68708422 original size:22 final size:22
Alignment explanation
Indices: 68708381--68708422 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
68708371 ATATTTGAGC
*
68708381 ATTGGTATTGAATTTAAATTGA
1 ATTGGTATTGAATTCAAATTGA
* *
68708403 ATTGGTATTTAATTCGAATT
1 ATTGGTATTGAATTCAAATT
68708423 TTAATTATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.48
Consensus pattern (22 bp):
ATTGGTATTGAATTCAAATTGA
Found at i:68717925 original size:37 final size:37
Alignment explanation
Indices: 68717875--68718019 Score: 236
Period size: 37 Copynumber: 3.9 Consensus size: 37
68717865 ACCTTTAGCT
* * *
68717875 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
68717912 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
68717949 CGGGCAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
68717986 CGGACATACTCTCCACACGTAGTCATCGGGTCTT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTT
68718020 TAGAGCTCGG
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:68718216 original size:47 final size:47
Alignment explanation
Indices: 68718138--68718500 Score: 582
Period size: 47 Copynumber: 7.6 Consensus size: 47
68718128 CCCTTCGGGA
* * * * * *
68718138 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68718185 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68718232 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68718279 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68718326 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68718373 CTTATCACATATATATACACTTTCACATTCATCACATTGGCTATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68718422 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68718469 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
68718501 TCAAATATAC
Statistics
Matches: 296, Mismatches: 16, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
47 229 0.77
49 67 0.23
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68720873 original size:85 final size:85
Alignment explanation
Indices: 68720744--68721007 Score: 510
Period size: 85 Copynumber: 3.1 Consensus size: 85
68720734 TATTTTATTG
*
68720744 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
68720809 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
68720829 CCCATGCTCTTTAGTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
68720894 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
68720914 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
68720979 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
68720999 CCCATGCTC
1 CCCATGCTC
68721008 ATGGCCGGCC
Statistics
Matches: 176, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 176 1.00
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:68725340 original size:46 final size:46
Alignment explanation
Indices: 68725290--68725465 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
68725280 TGGTTGAGCA
68725290 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68725336 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68725381 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
68725429 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68725466 GCGGTTACAT
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68725446 original size:93 final size:93
Alignment explanation
Indices: 68725287--68725458 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
68725277 GGATGGTTGA
*
68725287 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
68725352 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68725380 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
68725444 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
68725459 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68732752 original size:46 final size:46
Alignment explanation
Indices: 68732702--68732877 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
68732692 TGGTTGAGCA
68732702 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
68732748 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
68732793 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
68732841 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
68732878 GCGGTTACAT
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:68732858 original size:93 final size:93
Alignment explanation
Indices: 68732699--68732870 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
68732689 GGATGGTTGA
*
68732699 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
68732764 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
68732792 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
68732856 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
68732871 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:68740071 original size:54 final size:53
Alignment explanation
Indices: 68740009--68740120 Score: 120
Period size: 54 Copynumber: 2.1 Consensus size: 53
68739999 TTACCATACA
*
68740009 GGGGTATTTTAG-TAATTTTACACGACAAGGG-TATTTCGATAATTTTACAAATC
1 GGGGTA-TTTAGATAATTTTACA-AACAAGGGTTATTTCGATAATTTTACAAATC
* * * * * *
68740062 GGGGCTATTTCGATAATTTTACAAACTAGGGTTATTTTGGTAATTTTACATACC
1 GGGG-TATTTAGATAATTTTACAAACAAGGGTTATTTCGATAATTTTACAAATC
68740116 GGGGT
1 GGGGT
68740121 CTTAACTACC
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
53 15 0.31
54 34 0.69
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (53 bp):
GGGGTATTTAGATAATTTTACAAACAAGGGTTATTTCGATAATTTTACAAATC
Found at i:68740120 original size:27 final size:26
Alignment explanation
Indices: 68739996--68740120 Score: 101
Period size: 27 Copynumber: 4.7 Consensus size: 26
68739986 TAAAACAGTT
* *
68739996 ATTTTACCATACAGGGGTATTT-TAGTA
1 ATTTTA-CAAACAGGGGTATTTCGA-TA
* *
68740023 ATTTTACACGACAAGGGTATTTCGATA
1 ATTTTACA-AACAGGGGTATTTCGATA
68740050 ATTTTACAAATC-GGGGCTATTTCGATA
1 ATTTTACAAA-CAGGGG-TATTTCGATA
* * *
68740077 ATTTTACAAACTAGGGTTATTTTGGTA
1 ATTTTACAAAC-AGGGGTATTTCGATA
* *
68740104 ATTTTACATACCGGGGT
1 ATTTTACAAACAGGGGT
68740121 CTTAACTACC
Statistics
Matches: 81, Mismatches: 11, Indels: 13
0.77 0.10 0.12
Matches are distributed among these distances:
26 11 0.14
27 66 0.81
28 4 0.05
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (26 bp):
ATTTTACAAACAGGGGTATTTCGATA
Found at i:68743937 original size:27 final size:27
Alignment explanation
Indices: 68743899--68743960 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
68743889 AAAAATAGTC
*
68743899 ATTTTACCCTAC-AGGGATATTTCGATA
1 ATTTTACACTACAAGGG-TATTTCGATA
68743926 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
68743953 ATTTTACA
1 ATTTTACA
68743961 AACTGAGGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:68743984 original size:26 final size:26
Alignment explanation
Indices: 68743941--68744022 Score: 119
Period size: 26 Copynumber: 3.1 Consensus size: 26
68743931 ACACTACAAG
*
68743941 GGTATTTCGATAATTTTACAAACTGA
1 GGTATTTCGGTAATTTTACAAACTGA
* * *
68743967 GGTATTTTGGTAAATTTACAAACTGGG
1 GGTATTTCGGTAATTTTACAAACT-GA
68743994 GGTATTTCGGTAATTTTACAAACTGA
1 GGTATTTCGGTAATTTTACAAACTGA
68744020 GGT
1 GGT
68744023 CTTAACGACC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 25 0.52
27 23 0.48
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAAACTGA
Found at i:68746935 original size:477 final size:477
Alignment explanation
Indices: 68746041--68746992 Score: 1904
Period size: 477 Copynumber: 2.0 Consensus size: 477
68746031 ACAGTCCATG
68746041 CCCAATATTATGTCGAATTCCCCAAAAGGAAGTTCCATCAAATCAGCTAAAAAGATCATTCCTTG
1 CCCAATATTATGTCGAATTCCCCAAAAGGAAGTTCCATCAAATCAGCTAAAAAGATCATTCCTTG
68746106 AACCTCCAAAGGTACATCCTTAAACAATTTGTTCACTCTCACTGACTGCCCGAATGGACTCAACA
66 AACCTCCAAAGGTACATCCTTAAACAATTTGTTCACTCTCACTGACTGCCCGAATGGACTCAACA
68746171 CGGTAACCTCACTCGTAGTGTTTTCAACTGTTATACCCAAAGTCTCAGACACAGTGCATGCTATA
131 CGGTAACCTCACTCGTAGTGTTTTCAACTGTTATACCCAAAGTCTCAGACACAGTGCATGCTATA
68746236 TAAGAGTGCATAGACCCAACATCAATCAATGCAGTGTAAAGTACATGATGAATAAAGAATGTGCC
196 TAAGAGTGCATAGACCCAACATCAATCAATGCAGTGTAAAGTACATGATGAATAAAGAATGTGCC
68746301 CGTAATAACATATGGGGCATATCCATCCTCTCGAAGATGTATAGCATAATCCAGTCCTTGCTGCC
261 CGTAATAACATATGGGGCATATCCATCCTCTCGAAGATGTATAGCATAATCCAGTCCTTGCTGCC
68746366 TCGGCTCAGTACGAACCGCACCTCTGCCTGGTGCTCCACGACCACGGCCCATACCACTACCACCC
326 TCGGCTCAGTACGAACCGCACCTCTGCCTGGTGCTCCACGACCACGGCCCATACCACTACCACCC
68746431 CTGACCTGACCACGGCCTCTCGATGGCTACTGAAAACCTCTCTGCGGTCAAATAGTACCCATACC
391 CTGACCTGACCACGGCCTCTCGATGGCTACTGAAAACCTCTCTGCGGTCAAATAGTACCCATACC
68746496 AGTAGCTTGCATCTGATCAGTA
456 AGTAGCTTGCATCTGATCAGTA
68746518 CCCAATATTATGTCGAATTCCCCAAAAGGAAGTTCCATCAAATCAGCTAAAAAGATCATTCCTTG
1 CCCAATATTATGTCGAATTCCCCAAAAGGAAGTTCCATCAAATCAGCTAAAAAGATCATTCCTTG
68746583 AACCTCCAAAGGTACATCCTTAAACAATTTGTTCACTCTCACTGACTGCCCGAATGGACTCAACA
66 AACCTCCAAAGGTACATCCTTAAACAATTTGTTCACTCTCACTGACTGCCCGAATGGACTCAACA
68746648 CGGTAACCTCACTCGTAGTGTTTTCAACTGTTATACCCAAAGTCTCAGACACAGTGCATGCTATA
131 CGGTAACCTCACTCGTAGTGTTTTCAACTGTTATACCCAAAGTCTCAGACACAGTGCATGCTATA
68746713 TAAGAGTGCATAGACCCAACATCAATCAATGCAGTGTAAAGTACATGATGAATAAAGAATGTGCC
196 TAAGAGTGCATAGACCCAACATCAATCAATGCAGTGTAAAGTACATGATGAATAAAGAATGTGCC
68746778 CGTAATAACATATGGGGCATATCCATCCTCTCGAAGATGTATAGCATAATCCAGTCCTTGCTGCC
261 CGTAATAACATATGGGGCATATCCATCCTCTCGAAGATGTATAGCATAATCCAGTCCTTGCTGCC
68746843 TCGGCTCAGTACGAACCGCACCTCTGCCTGGTGCTCCACGACCACGGCCCATACCACTACCACCC
326 TCGGCTCAGTACGAACCGCACCTCTGCCTGGTGCTCCACGACCACGGCCCATACCACTACCACCC
68746908 CTGACCTGACCACGGCCTCTCGATGGCTACTGAAAACCTCTCTGCGGTCAAATAGTACCCATACC
391 CTGACCTGACCACGGCCTCTCGATGGCTACTGAAAACCTCTCTGCGGTCAAATAGTACCCATACC
68746973 AGTAGCTTGCATCTGATCAG
456 AGTAGCTTGCATCTGATCAG
68746993 GCCTTCGTGG
Statistics
Matches: 475, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
477 475 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (477 bp):
CCCAATATTATGTCGAATTCCCCAAAAGGAAGTTCCATCAAATCAGCTAAAAAGATCATTCCTTG
AACCTCCAAAGGTACATCCTTAAACAATTTGTTCACTCTCACTGACTGCCCGAATGGACTCAACA
CGGTAACCTCACTCGTAGTGTTTTCAACTGTTATACCCAAAGTCTCAGACACAGTGCATGCTATA
TAAGAGTGCATAGACCCAACATCAATCAATGCAGTGTAAAGTACATGATGAATAAAGAATGTGCC
CGTAATAACATATGGGGCATATCCATCCTCTCGAAGATGTATAGCATAATCCAGTCCTTGCTGCC
TCGGCTCAGTACGAACCGCACCTCTGCCTGGTGCTCCACGACCACGGCCCATACCACTACCACCC
CTGACCTGACCACGGCCTCTCGATGGCTACTGAAAACCTCTCTGCGGTCAAATAGTACCCATACC
AGTAGCTTGCATCTGATCAGTA
Found at i:68748693 original size:33 final size:34
Alignment explanation
Indices: 68748648--68748744 Score: 101
Period size: 33 Copynumber: 2.9 Consensus size: 34
68748638 GTTACACAAT
* *
68748648 TGGGCCTAAGCCCATATCAGTCGCAATATCAGTC
1 TGGGCCTTAGCCCATATCAGTAGCAATATCAGTC
* * *
68748682 T-GGCCTTAGCCCA-ATACAGTATCAGTATCAGTG
1 TGGGCCTTAGCCCATAT-CAGTAGCAATATCAGTC
* *
68748715 TGGGCCTTAGCCCATCTCAGTA-CAGTATCA
1 TGGGCCTTAGCCCATATCAGTAGCAATATCA
68748745 TAAATGCATA
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
32 2 0.04
33 33 0.61
34 18 0.33
35 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (34 bp):
TGGGCCTTAGCCCATATCAGTAGCAATATCAGTC
Found at i:68753149 original size:33 final size:33
Alignment explanation
Indices: 68753112--68753217 Score: 203
Period size: 33 Copynumber: 3.2 Consensus size: 33
68753102 AGATTTTAGC
*
68753112 ACAATTAAACACTTATAACATAAATAAACTAGG
1 ACAATTAAACAATTATAACATAAATAAACTAGG
68753145 ACAATTAAACAATTATAACATAAATAAACTAGG
1 ACAATTAAACAATTATAACATAAATAAACTAGG
68753178 ACAATTAAACAATTATAACATAAATAAACTAGG
1 ACAATTAAACAATTATAACATAAATAAACTAGG
68753211 ACAATTA
1 ACAATTA
68753218 CTTTAATTAA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 72 1.00
ACGTcount: A:0.57, C:0.13, G:0.06, T:0.25
Consensus pattern (33 bp):
ACAATTAAACAATTATAACATAAATAAACTAGG
Found at i:68755139 original size:89 final size:89
Alignment explanation
Indices: 68755034--68755212 Score: 349
Period size: 89 Copynumber: 2.0 Consensus size: 89
68755024 ATTTAGTTTA
68755034 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTCATTTCAAGAGATTTGA
1 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTCATTTCAAGAGATTTGA
68755099 ATTGTGGAAGCATTCAAAATCTGT
66 ATTGTGGAAGCATTCAAAATCTGT
*
68755123 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTGATTTCAAGAGATTTGA
1 GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTCATTTCAAGAGATTTGA
68755188 ATTGTGGAAGCATTCAAAATCTGT
66 ATTGTGGAAGCATTCAAAATCTGT
68755212 G
1 G
68755213 GATTTGTTCT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.47
Consensus pattern (89 bp):
GCTTTCTTTCTTTCTTACGACTTTAGATTTATTTCAATTGTTCTTGTTCATTTCAAGAGATTTGA
ATTGTGGAAGCATTCAAAATCTGT
Found at i:68759034 original size:50 final size:44
Alignment explanation
Indices: 68758932--68759018 Score: 138
Period size: 44 Copynumber: 2.0 Consensus size: 44
68758922 ACTAATTATG
68758932 TGCACTTAGTGTGCGAAATCAAGATAGCTTTAACTATATATATT
1 TGCACTTAGTGTGCGAAATCAAGATAGCTTTAACTATATATATT
* * **
68758976 TGCACTTAGTGTGCGAGATCGAGATAGCTTTGGCTATATATAT
1 TGCACTTAGTGTGCGAAATCAAGATAGCTTTAACTATATATAT
68759019 GTATATTGGC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.36
Consensus pattern (44 bp):
TGCACTTAGTGTGCGAAATCAAGATAGCTTTAACTATATATATT
Found at i:68760521 original size:40 final size:40
Alignment explanation
Indices: 68760459--68760554 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 40
68760449 AAACCAAGTA
* * *
68760459 CCTTCGGGATTTA-ACCGAATATAGCTA-CTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGAATATAG-TAGCTCGCACAAATG
*
68760498 CCTTCGGGACTTAGCCCGAATATAGTAGTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGAATATAGTAGCTCGCACAAATG
*
68760538 CCTTTGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
68760555 CATTATCATC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 14 0.28
40 36 0.72
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGAATATAGTAGCTCGCACAAATG
Found at i:68762288 original size:47 final size:47
Alignment explanation
Indices: 68762219--68762629 Score: 635
Period size: 47 Copynumber: 8.7 Consensus size: 47
68762209 TAGGGCTGTC
* * **
68762219 ACATGTATATATGAGATAAGGCCGAATGGAAAATGTGATGAATGTGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
68762266 ACATGCATATATGAGATAAGGCCGAATGGCCAATTTGATGAATGTGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
68762313 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
68762360 ACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATATGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
68762407 ACATGCATATGTGTGATAAGGCCGAATGGCCGATGTGATGAATGTGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
68762454 ACATGCATATGTGTGATAAGGCCGAATAGCCAATGTGATGAATGTGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
68762501 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
68762548 ACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATGAATGTGGA
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GA
* * * * * *
68762596 A-GTGTATATATGTGGTAAAGACGAATGGCTAATG
1 ACATGCATATATGTGATAAGGCCGAATGGCCAATG
68762630 CGAAATGTGT
Statistics
Matches: 341, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 338 0.99
48 3 0.01
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:68762348 original size:22 final size:22
Alignment explanation
Indices: 68762323--68762398 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
68762313 ACATGCATAT
68762323 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* *
68762345 ATGTGATGAATG-TGAACAT-G-CA
1 ATGTGAT-AAGGCCG-A-ATGGCCA
68762367 TATGTGTGATAAGGCCGAATGGCCA
1 -A--TGTGATAAGGCCGAATGGCCA
68762392 ATGTGAT
1 ATGTGAT
68762399 GAATATGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 16 0.39
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:68762419 original size:23 final size:23
Alignment explanation
Indices: 68762345--68762419 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
68762335 CGAATGGCCA
*
68762345 ATGTGATGAATGTGAACATGCAT
1 ATGTGATGAATATGAACATGCAT
* **
68762368 ATGTG-TG-ATAAGGCCGAATGGCCA-
1 ATGTGATGAATATGAAC--AT-G-CAT
68762392 ATGTGATGAATATGAACATGCAT
1 ATGTGATGAATATGAACATGCAT
68762415 ATGTG
1 ATGTG
68762420 TGATAAGGCC
Statistics
Matches: 38, Mismatches: 7, Indels: 14
0.64 0.12 0.24
Matches are distributed among these distances:
21 4 0.11
22 4 0.11
23 13 0.34
24 8 0.21
25 4 0.11
26 5 0.13
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATATGAACATGCAT
Found at i:68762492 original size:22 final size:22
Alignment explanation
Indices: 68762465--68762539 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
68762455 CATGCATATG
68762465 TGTGATAAGGCCGAATAGCCAA
1 TGTGATAAGGCCGAATAGCCAA
* * * *
68762487 TGTGATGAATG-TGAACATGCATATA
1 TGTGAT-AAGGCCGAATA-GC-CA-A
*
68762512 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATAGCCAA
68762534 TGTGAT
1 TGTGAT
68762540 GAATGTGAAC
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
22 17 0.44
23 6 0.15
24 6 0.15
25 10 0.26
ACGTcount: A:0.33, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATAGCCAA
Found at i:68762586 original size:22 final size:22
Alignment explanation
Indices: 68762511--68762586 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
68762501 ACATGCATAT
*
68762511 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
68762533 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
68762557 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
68762580 ATGTGAT
1 ATGTGAT
68762587 GAATGTGGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:68762659 original size:46 final size:46
Alignment explanation
Indices: 68762603--68762785 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
68762593 GGAAGTGTAT
* * *
68762603 ATATGTGGTAAAGACGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
68762649 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
68762695 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
* * * * * **
68762741 ATATGTGGTAAAGCCAAATGGGTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATG
68762786 TGTATATATA
Statistics
Matches: 127, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 127 1.00
ACGTcount: A:0.35, C:0.08, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
Found at i:68764321 original size:40 final size:40
Alignment explanation
Indices: 68764266--68764360 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
68764256 TGAGAGTTAT
* *
68764266 ATATATCCGGGCTAAGTCCCGAAGAGCCTTTGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
**
68764306 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
68764346 ATATATCCGGGCTAA
1 ATATATCCGGGCTAA
68764361 ACCTCGAAGG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:68764368 original size:40 final size:40
Alignment explanation
Indices: 68764266--68764380 Score: 144
Period size: 40 Copynumber: 2.9 Consensus size: 40
68764256 TGAGAGTTAT
* * *
68764266 ATATATCCGGGCTAAGTCC-CGAAGAGCCTTTGTGCTAGTG
1 ATATATCCGGGCTAA-ACCTCGAAGAGCATTCGTGCTAGTG
***
68764306 ATATATCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAACCTCGAAGAGCATTCGTGCTAGTG
*
68764346 ATATATCCGGGCTAAACCTCGAAG-GCATTCATGCT
1 ATATATCCGGGCTAAACCTCGAAGAGCATTCGTGCT
68764381 GGAATTATGA
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 10 0.15
40 55 0.85
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATATCCGGGCTAAACCTCGAAGAGCATTCGTGCTAGTG
Found at i:68764459 original size:29 final size:28
Alignment explanation
Indices: 68764420--68764521 Score: 107
Period size: 29 Copynumber: 3.6 Consensus size: 28
68764410 CTCCAACTGA
* *
68764420 GCACTATGTGTGCCAGATCAGTAGTTGAG
1 GCACTATGTGTGCGAGATC-GTAATTGAG
* * *
68764449 GCACTATGTGTGCGAGTTCTTCAATCGA-
1 GCACTATGTGTGCGAGATCGT-AATTGAG
* *
68764477 GCACTATGTGTGTGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGA-TCGTAATTGAG
68764506 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
68764522 TTCTTTAATC
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 21 0.36
29 38 0.64
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGTAATTGAG
Found at i:68764479 original size:57 final size:57
Alignment explanation
Indices: 68764388--68764576 Score: 213
Period size: 57 Copynumber: 3.3 Consensus size: 57
68764378 GCTGGAATTA
* * * *
68764388 TGAGGCACTGTGTGTGCAAGTTCTCCAA-CTGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATC-GAGCACTATGTGTGCGAGATCAGTAGT
* ** *
68764445 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGTGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
* * * *
68764502 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTATGCGAAATCAGTCAG-
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGT-AGT
* *
68764559 TG-GGCACTGTGTATGCGA
1 TGAGGCACTATGTGTGCGA
68764577 AGTGTGTTTC
Statistics
Matches: 112, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
56 14 0.12
57 96 0.86
58 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATCAGTAGT
Found at i:68764530 original size:29 final size:28
Alignment explanation
Indices: 68764392--68764548 Score: 120
Period size: 28 Copynumber: 5.5 Consensus size: 28
68764382 GAATTATGAG
* * ** *
68764392 GCACTGTGTGTGCAAGTTCTCCAACTGA
1 GCACTATGTGTGCGAGTTCTGTAATTGA
* * * *
68764420 GCACTATGTGTGCCAGATCAGTAGTTGA
1 GCACTATGTGTGCGAGTTCTGTAATTGA
*
68764448 GGCACTATGTGTGCGAGTTCT-TCAATCGA
1 -GCACTATGTGTGCGAGTTCTGT-AATTGA
* *
68764477 GCACTATGTGTGTGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTGTAATTGA
* *
68764505 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTGTAATTGA
* *
68764534 GCGCTATGTATGCGA
1 GCACTATGTGTGCGA
68764549 AATCAGTCAG
Statistics
Matches: 101, Mismatches: 22, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
28 56 0.55
29 45 0.45
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTGTAATTGA
Found at i:68768411 original size:47 final size:47
Alignment explanation
Indices: 68768357--68768594 Score: 343
Period size: 47 Copynumber: 5.1 Consensus size: 47
68768347 TTAGGATTTT
** * * *
68768357 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68768404 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
68768451 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68768498 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * * *
68768545 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCAAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
68768592 ATG
1 ATG
68768595 CGAAATCTGT
Statistics
Matches: 176, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 173 0.98
48 3 0.02
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68768432 original size:25 final size:25
Alignment explanation
Indices: 68768404--68768529 Score: 92
Period size: 25 Copynumber: 5.3 Consensus size: 25
68768394 CGAATGGCAA
68768404 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
68768429 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
68768451 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
68768476 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
68768498 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
68768523 ATGTGAT
1 ATGTGAT
68768530 AAGGCAGAAT
Statistics
Matches: 75, Mismatches: 12, Indels: 28
0.65 0.10 0.24
Matches are distributed among these distances:
22 16 0.21
23 18 0.24
24 18 0.24
25 23 0.31
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:68768457 original size:22 final size:22
Alignment explanation
Indices: 68768429--68768504 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
68768419 ACATGCATAT
68768429 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
68768451 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
68768475 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
68768498 ATGTGAT
1 ATGTGAT
68768505 GAATGTGAAC
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 15 0.37
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:68768551 original size:22 final size:22
Alignment explanation
Indices: 68768429--68768551 Score: 60
Period size: 22 Copynumber: 5.3 Consensus size: 22
68768419 ACATGCATAT
*
68768429 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
68768451 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
*
68768475 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
*
68768498 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
68768522 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
68768545 ATGTGAT
1 ATGTGAT
68768552 GAACGTGGAA
Statistics
Matches: 76, Mismatches: 7, Indels: 36
0.64 0.06 0.30
Matches are distributed among these distances:
22 23 0.30
23 19 0.25
24 18 0.24
25 16 0.21
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:68768624 original size:46 final size:47
Alignment explanation
Indices: 68768568--68768750 Score: 239
Period size: 46 Copynumber: 4.0 Consensus size: 47
68768558 GGAAGTGTAT
*
68768568 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATC-TGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAATCGTGTATGAGATGG
*
68768614 ATATGAGGTAAAGCCGAATGGCTAATGCGAAA-CGTGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAATCGTGTATGAGATGG
* * *
68768660 ATATGAGGTAAAGCCGAATGGATAATGC-AAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAATCGTGTATGAGATGG
* * * * * *
68768706 ACATGTGGTAAAGCCAAATGGGTAATGTGAGAT-ATGTATGAGATG
1 ATATGAGGTAAAGCCAAATGGCTAATGCGAAATCGTGTATGAGATG
68768751 TGTATATATA
Statistics
Matches: 123, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
45 4 0.03
46 117 0.95
47 2 0.02
ACGTcount: A:0.36, C:0.09, G:0.31, T:0.24
Consensus pattern (47 bp):
ATATGAGGTAAAGCCAAATGGCTAATGCGAAATCGTGTATGAGATGG
Found at i:68769924 original size:25 final size:24
Alignment explanation
Indices: 68769896--68769948 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 24
68769886 AGTTAACTTT
68769896 GAATTC-ATATAGATCAAGAAAAAAA
1 GAATTCAATATAGATC--GAAAAAAA
*
68769921 GAATTCAGATTTAGATCGAAAAAAA
1 GAATTCA-ATATAGATCGAAAAAAA
68769946 GAA
1 GAA
68769949 AGGTTATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 17 0.68
27 8 0.32
ACGTcount: A:0.57, C:0.08, G:0.15, T:0.21
Consensus pattern (24 bp):
GAATTCAATATAGATCGAAAAAAA
Found at i:68784153 original size:28 final size:28
Alignment explanation
Indices: 68784038--68784175 Score: 107
Period size: 28 Copynumber: 4.9 Consensus size: 28
68784028 GATTTTGAAA
* ** **
68784038 ATGGCACTTAGTGTGTGAGTTATTGAGG
1 ATGGCACTTAGTGTGCGAGACATCCAGG
* * * *
68784066 ATGGCACTTAGTGTGCAAAACATCTAGAA
1 ATGGCACTTAGTGTGCGAGACATCCAG-G
** * *
68784095 ATGGCACTTAGTGACCGA-ATTATCGAGG
1 ATGGCACTTAGTGTGCGAGA-CATCCAGG
*
68784123 ATGGCACTTAGTGTGCGAGACATCCACG
1 ATGGCACTTAGTGTGCGAGACATCCAGG
* *
68784151 ATGGTACTTAGTGTGCGATACATCC
1 ATGGCACTTAGTGTGCGAGACATCC
68784176 GTGAAGCCAC
Statistics
Matches: 86, Mismatches: 21, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
28 65 0.76
29 21 0.24
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAGACATCCAGG
Found at i:68786431 original size:28 final size:28
Alignment explanation
Indices: 68786368--68786546 Score: 297
Period size: 28 Copynumber: 6.4 Consensus size: 28
68786358 ATATTAAGTC
*
68786368 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
68786395 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68786423 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68786451 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68786479 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
68786507 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68786536 CGCACACTTAG
1 CGCACACTTAG
68786547 CGCCAATCTC
Statistics
Matches: 145, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 107 0.74
29 16 0.11
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68794466 original size:28 final size:28
Alignment explanation
Indices: 68794403--68794581 Score: 279
Period size: 28 Copynumber: 6.4 Consensus size: 28
68794393 ATATTATGTC
*
68794403 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
68794430 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68794458 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68794486 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68794514 CCCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
68794542 CGAACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68794571 CGCACACTTAG
1 CGCACACTTAG
68794582 CGCCAATCTC
Statistics
Matches: 141, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 22 0.16
28 104 0.74
29 15 0.11
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68801539 original size:53 final size:53
Alignment explanation
Indices: 68801443--68801638 Score: 162
Period size: 53 Copynumber: 3.6 Consensus size: 53
68801433 TTCCTTTTTA
* * *
68801443 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCTTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGGATCTTTGCCTTATG
* * * *
68801496 AACTCACCGTTGCCATGCCTTGGCATGGTCTTACTTGGGATCTTTGGCTTATCG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGGATCTTTGCCTTAT-G
** * * * * * * * *
68801550 CAGTTTATCAATGCCATGTCTTGACATGGTCTTACAT--GATTTTCTTGCCTTGTAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGGA-TCT-TTGCCTTAT-G
* *
68801605 AACTTACCAATGCCATGCCTTGACATGGTCTTAC
1 AACTCACCATTGCCATGCCTTGACATGGTCTTAC
68801639 TTGGTATCCT
Statistics
Matches: 114, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
53 47 0.41
54 33 0.29
55 34 0.30
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACGTGGGATCTTTGCCTTATG
Found at i:68806420 original size:14 final size:15
Alignment explanation
Indices: 68806401--68806430 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
68806391 GTTTATTATA
68806401 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
68806415 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
68806430 T
1 T
68806431 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:68807774 original size:37 final size:37
Alignment explanation
Indices: 68807715--68807823 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
68807705 AGCTCAGATG
* *
68807715 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* * *
68807752 AAATTTCCACACGTAGTCATCGGGTCTTACTCTGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
68807789 TAATCTCCACACGTAGTCATTGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
68807824 ATATATTTCC
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:68808019 original size:47 final size:47
Alignment explanation
Indices: 68807968--68808395 Score: 723
Period size: 47 Copynumber: 9.1 Consensus size: 47
68807958 CACTTCCACG
** *
68807968 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
*
68808015 TTCATCACATTGGTCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
68808062 TTCATCACATTGG-CATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
** *
68808108 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
*
68808155 TTCATCACATTGGCCATTCAGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
** *
68808202 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
68808249 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
*
68808296 TTCATCACATTGGCCATTCGGCCTTATCAGATATTTGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
* *
68808343 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
68808390 TTCATC
1 TTCATC
68808396 TCATAGAATC
Statistics
Matches: 360, Mismatches: 20, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 46 0.13
47 314 0.87
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATTTGCATGTTCACA
Found at i:68808139 original size:22 final size:22
Alignment explanation
Indices: 68808111--68808233 Score: 76
Period size: 23 Copynumber: 5.3 Consensus size: 22
68808101 GTTCACATTC
68808111 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* *
68808133 ATCACATATATG-CATGT-TCACATT
1 ATCACAT-T-GGCCAT-TCT-ACCTT
68808157 CATCACATTGGCCATTC-AGCCTT
1 -ATCACATTGGCCATTCTA-CCTT
* *
68808180 ATCACATATTTG-CATGT-TCACATT
1 ATCAC--ATTGGCCAT-TCT-ACCTT
68808204 CATCACATTGGCCATTCTACCTT
1 -ATCACATTGGCCATTCTACCTT
68808227 ATCACAT
1 ATCACAT
68808234 ATATGCATGT
Statistics
Matches: 77, Mismatches: 8, Indels: 32
0.66 0.07 0.27
Matches are distributed among these distances:
22 20 0.26
23 22 0.29
24 22 0.29
25 13 0.17
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.36
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:68808280 original size:22 final size:22
Alignment explanation
Indices: 68808252--68808373 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
68808242 GTTCACATTC
68808252 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
68808274 ATCACATATTTG-CATGTTC-ACATT
1 ATCAC--ATTGGCCA--TTCGGCCTT
68808298 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
68808321 ATCAGATATTTG-CATGTTC-ACATT
1 ATC--ACATTGGCCA--TTCGGCCTT
68808345 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
68808368 ATCACA
1 ATCACA
68808374 CATATGCATG
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 20 0.28
23 19 0.26
24 19 0.26
25 14 0.19
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:68812631 original size:43 final size:43
Alignment explanation
Indices: 68812519--68812633 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
68812509 AGCTGTGAAT
* **
68812519 AATATTATCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAATGA
* * *
68812562 GATAATATCGAGCTTCAGGCCTAGCAGGCTATAATTCCAATGA
1 AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAATGA
* *
68812605 AATGATATCGGGCTTCAAGCCTAGCAGGC
1 AATAATATCGGGCTTCAGGCCTAGCAGGC
68812634 AAAATGTCAG
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (43 bp):
AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAATGA
Found at i:68813280 original size:11 final size:11
Alignment explanation
Indices: 68813260--68813289 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
68813250 TGTGAAAGAG
*
68813260 TAAATTTGTAA
1 TAAATCTGTAA
68813271 TAAATCTGTAA
1 TAAATCTGTAA
68813282 TAAATCTG
1 TAAATCTG
68813290 CTTGGGACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (11 bp):
TAAATCTGTAA
Found at i:68822174 original size:93 final size:93
Alignment explanation
Indices: 68822015--68822183 Score: 284
Period size: 93 Copynumber: 1.8 Consensus size: 93
68822005 GCCCATAAGT
* * *
68822015 GAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
68822080 CGAGCTCGGATGCCTAGTTACATCTCCC
66 CGAGCTCGGATGCCTAGTTACATCTCCC
* *
68822108 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
68822173 CGAGTTCGGAT
66 CGAGCTCGGAT
68822184 TCTCAACCAT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCCC
Found at i:68822182 original size:46 final size:46
Alignment explanation
Indices: 68822007--68822182 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
68821997 TGTAACCTGC
* * *
68822007 CCATAAGTGAACTCGGACTCAACTGAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
68822053 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
*** *
68822103 -C-T-CCCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
68822146 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
68822183 TTCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 63 0.58
47 28 0.26
48 1 0.01
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:68827388 original size:10 final size:10
Alignment explanation
Indices: 68827373--68827408 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
68827363 GTCCTAATTT
68827373 CATATTTTCA
1 CATATTTTCA
68827383 CATATTTTCA
1 CATATTTTCA
68827393 CATA-TTTCA
1 CATATTTTCA
68827402 CATATTT
1 CATATTT
68827409 CATGAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (10 bp):
CATATTTTCA
Done.