Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 204 of 345
Found at i:69167829 original size:17 final size:17
Alignment explanation
Indices: 69167807--69167839 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
69167797 GTGGAAATCG
69167807 AATTATAAGTTGAATAT
1 AATTATAAGTTGAATAT
69167824 AATTATAAGTTGAATA
1 AATTATAAGTTGAATA
69167840 AGATATGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.39
Consensus pattern (17 bp):
AATTATAAGTTGAATAT
Found at i:69182041 original size:27 final size:27
Alignment explanation
Indices: 69181998--69182128 Score: 122
Period size: 27 Copynumber: 4.8 Consensus size: 27
69181988 CATGTCGTAA
*
69181998 AAATGTTATAAAAGGAATGCCTTTGT-G
1 AAAT-TTATGAAAGGAATGCCTTTGTGG
* *
69182025 ACAATTTATGAAAGGAACGCATTTGTGG
1 A-AATTTATGAAAGGAATGCCTTTGTGG
* * * *
69182053 CAATATATGGAAGGAATACCTTTGTGG
1 AAATTTATGAAAGGAATGCCTTTGTGG
** *
69182080 AAAAATATGAAAGGAATGCTTTTGTGG
1 AAATTTATGAAAGGAATGCCTTTGTGG
*
69182107 TAAACTT-TGAAAGGAATGCCTT
1 -AAATTTATGAAAGGAATGCCTT
69182129 GACGGTATAG
Statistics
Matches: 84, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
27 76 0.90
28 8 0.10
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.31
Consensus pattern (27 bp):
AAATTTATGAAAGGAATGCCTTTGTGG
Found at i:69182121 original size:54 final size:54
Alignment explanation
Indices: 69182008--69182128 Score: 138
Period size: 54 Copynumber: 2.2 Consensus size: 54
69181998 AAATGTTATA
**
69182008 AAAGGAATGCCTTTGTGACAATTTATGAAAGGAACGCATTTGTGGCAATATATG
1 AAAGGAATGCCTTTGTGACAAAATATGAAAGGAACGCATTTGTGGCAATATATG
* * * * * *
69182062 GAAGGAATACCTTTGTGGA-AAAATATGAAAGGAATGCTTTTGTGGTAA-ACTTTG
1 AAAGGAATGCCTTTGT-GACAAAATATGAAAGGAACGCATTTGTGGCAATA-TATG
69182116 AAAGGAATGCCTT
1 AAAGGAATGCCTT
69182129 GACGGTATAG
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
53 1 0.02
54 52 0.95
55 2 0.04
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.30
Consensus pattern (54 bp):
AAAGGAATGCCTTTGTGACAAAATATGAAAGGAACGCATTTGTGGCAATATATG
Found at i:69187562 original size:43 final size:42
Alignment explanation
Indices: 69187428--69187576 Score: 140
Period size: 42 Copynumber: 3.5 Consensus size: 42
69187418 TGTGTTTCTG
* * *
69187428 TGTAAGACCACGTCTGGGAC-GTTGGCATCGATTTATGTTTTACA
1 TGTAAGACCATGTCTAGGACAG-TGGCATCGATTT-TG-ATTACA
* * * *
69187472 TGTAAGATCATGTCTGGGACATTGGCATCG-TATTTGATTTCA
1 TGTAAGACCATGTCTAGGACAGTGGCATCGAT-TTTGATTACA
* *
69187514 TGTAAGACCCTGTTTAGGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCATGTCTAGGACAGTGGCATCGAT-TTTGATTACA
* *
69187557 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATGTCTAGGAC
69187577 GTTGGCACTG
Statistics
Matches: 86, Mismatches: 16, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 29 0.34
43 29 0.34
44 28 0.33
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTAGGACAGTGGCATCGATTTTGATTACA
Found at i:69187583 original size:43 final size:42
Alignment explanation
Indices: 69187428--69187583 Score: 174
Period size: 43 Copynumber: 3.6 Consensus size: 42
69187418 TGTGTTTCTG
*
69187428 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTATGTTTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATTT-TG-ATTACA
* * * *
69187472 TGTAAGATCATGTCTGGGACATTGGCATCG-TATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTTGATTACA
* *
69187514 TGTAAGACC-CTGTTTAGGACAG-TGGCATCGATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TTTGATTACA
69187557 TGTAAGACCACGTCTGGGACGTTGGCA
1 TGTAAGACCACGTCTGGGACGTTGGCA
69187584 CTGTATATGT
Statistics
Matches: 92, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.30
43 34 0.37
44 30 0.33
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTTTGATTACA
Found at i:69189768 original size:40 final size:40
Alignment explanation
Indices: 69189713--69189895 Score: 357
Period size: 40 Copynumber: 4.6 Consensus size: 40
69189703 TGATAACCGA
69189713 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
69189753 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
69189793 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
69189833 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
1 GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
*
69189873 GCTAAGTCCCGAAGGCAATTGTG
1 GCTAAGTCCCGAAGGCATTTGTG
69189896 ACTGCCCAAA
Statistics
Matches: 142, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGG
Found at i:69191562 original size:38 final size:40
Alignment explanation
Indices: 69191447--69191706 Score: 331
Period size: 39 Copynumber: 6.7 Consensus size: 40
69191437 TTGAATGATG
* * * *
69191447 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
69191487 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
69191527 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69191565 TCCGGGTTAA-T-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69191603 TCCGGGTTAA-TCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
69191642 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
69191682 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
69191707 AACGAGGAGC
Statistics
Matches: 198, Mismatches: 13, Indels: 18
0.86 0.06 0.08
Matches are distributed among these distances:
37 9 0.05
38 60 0.30
39 64 0.32
40 57 0.29
41 8 0.04
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69191588 original size:76 final size:77
Alignment explanation
Indices: 69191447--69191704 Score: 317
Period size: 76 Copynumber: 3.3 Consensus size: 77
69191437 TTGAATGATG
* * * * * * *
69191447 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGG-GTTA-ATCCGAAGGCATTT
*
69191512 GTGCGAGATACTAAT
63 GTGCGAGTTACTAAT
69191527 TCCGGGCTAAG-CCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAATCCGAAGGCATTTGTG
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAATCCGAAGGCATTTGTG
*
69191591 CGAGTTACTAAA
66 CGAGTTACTAAT
*
69191603 TCCGGGTTAA-TCCCGAAGGCATTTGTGCGAGTTACTAAAT-CGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAAATCCGGGTTAA-T-CCGAAGGCATTT
69191666 GTGCGAGTTACT-AT
63 GTGCGAGTTACTAAT
* *
69191680 AACCGGGCTATGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATT
69191705 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 14, Indels: 14
0.85 0.08 0.08
Matches are distributed among these distances:
76 54 0.34
77 22 0.14
78 45 0.28
79 26 0.16
80 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (77 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAATCCGAAGGCATTTGTG
CGAGTTACTAAT
Found at i:69199253 original size:47 final size:50
Alignment explanation
Indices: 69199136--69199311 Score: 187
Period size: 47 Copynumber: 3.7 Consensus size: 50
69199126 TAACCCGCCC
* * *
69199136 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C-GTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTCACATCCA
*
69199182 TAA-TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTCACATCCA
* * *
69199229 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTCACATCCA
*
69199275 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
69199312 TCAACCATCC
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
43 3 0.03
44 4 0.04
45 29 0.26
46 5 0.05
47 61 0.55
48 2 0.02
49 3 0.03
50 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (50 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTCACATCCA
Found at i:69199301 original size:94 final size:92
Alignment explanation
Indices: 69199141--69199311 Score: 297
Period size: 94 Copynumber: 1.8 Consensus size: 92
69199131 CGCCCTAAGT
*
69199141 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAATGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAATGAACTCGGACTCAACTCAAC
69199206 GAGTTCGGATGCCTAGTTACATCTCAC
66 GAGTTCGGATGCCTAGTTACATCTCAC
* *
69199233 GAACTCGGACTCAACTCAACGAGTTCGGACATTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC-GTTCGCATCCATAA-TGAACTCGGACTCAACTCA
69199298 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
69199312 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 28 0.38
93 13 0.18
94 33 0.45
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAATGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:69199761 original size:30 final size:30
Alignment explanation
Indices: 69199727--69199786 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
69199717 ATTTAATACG
69199727 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
69199757 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
69199787 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:69206760 original size:46 final size:45
Alignment explanation
Indices: 69206693--69206860 Score: 185
Period size: 46 Copynumber: 3.6 Consensus size: 45
69206683 CGCCCCTAAG
* *
69206693 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCATT-GCATCCATAAA
* * * **
69206739 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTTG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--GCATTGCATCCAT-AAA
* * * *
69206786 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCA-TTGCATCCATAAA
69206832 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
69206861 ATGCTCAACC
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 62 0.62
47 33 0.33
48 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCATTGCATCCATAAA
Found at i:69206804 original size:93 final size:93
Alignment explanation
Indices: 69206694--69206864 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
69206684 GCCCCTAAGT
* * *
69206694 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69206759 CGAGTTCGGATGCCTTGTTACATCTCAC
66 CGAGTTCGGATGCCTTGTTACATCTCAC
* * *
69206787 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69206852 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69206865 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTTGTTACATCTCAC
Found at i:69207315 original size:29 final size:30
Alignment explanation
Indices: 69207282--69207341 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69207272 CATTTAATAC
* *
69207282 AAAC-TTTGGAAAATTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACACTTTTGCCCCT
*
69207311 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACACTTTTGCCCCT
69207341 A
1 A
69207342 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 4 0.15
30 23 0.85
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACTTTTGCCCCT
Found at i:69212605 original size:19 final size:20
Alignment explanation
Indices: 69212581--69212618 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
69212571 GGTACCACCA
69212581 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
69212600 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
69212619 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:69212963 original size:93 final size:93
Alignment explanation
Indices: 69212848--69213018 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
69212838 GCCCCTAAGT
* * *
69212848 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
69212912 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
69212941 GAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
69213006 CGAGTTCGGATGC
66 CGAGTTCGGATGC
69213019 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:69213015 original size:46 final size:46
Alignment explanation
Indices: 69212843--69213015 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
69212833 AACCCGCCCC
* * *
69212843 TAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTTGCATCCA
* * * *
69212889 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* * *
69212937 TCA-CGAACTCGAACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
69212982 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
69213016 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 4 0.04
46 57 0.55
47 28 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:69213472 original size:30 final size:30
Alignment explanation
Indices: 69213438--69213497 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
69213428 ATTTAATACT
69213438 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** * *
69213468 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
69213498 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:69215620 original size:42 final size:41
Alignment explanation
Indices: 69215573--69215694 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 41
69215563 TTAGGGTTAT
* *
69215573 TGAGACTACGTGTAATACAATATCTGGGATGTGGCATCAATA
1 TGAGACTACGTGTAAGACCATATCTGGGAT-TGGCATCAATA
* * *
69215615 TGAGACTTCGTGTAAGACCATACCTGGGCTATTGGCATCGATA
1 TGAGACTACGTGTAAGACCATATCTGGG--ATTGGCATCAATA
* * *
69215658 CGAGATTACATGTAAGACCATATCTGGGATATGGCAT
1 TGAGACTACGTGTAAGACCATATCTGGGAT-TGGCAT
69215695 TGGTACGATA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.03
42 30 0.45
43 33 0.49
44 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (41 bp):
TGAGACTACGTGTAAGACCATATCTGGGATTGGCATCAATA
Found at i:69235613 original size:47 final size:47
Alignment explanation
Indices: 69235174--69235611 Score: 741
Period size: 47 Copynumber: 9.3 Consensus size: 47
69235164 CAGCCAAGAC
69235174 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
69235221 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
69235268 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
69235315 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
69235362 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
69235409 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
69235456 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
69235503 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
69235550 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
69235597 AGTGCATAAATGTGA
1 AGTGTATATATGTGA
69235612 CATCATACGA
Statistics
Matches: 374, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 374 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:69240505 original size:101 final size:99
Alignment explanation
Indices: 69240287--69240487 Score: 276
Period size: 101 Copynumber: 2.0 Consensus size: 99
69240277 TATGTAGCCA
* * * * *
69240287 AACTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
69240352 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
66 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
* * * * * *
69240386 AACTATCTGATACACGTAGTAGCCTGCACTTAGTATTACACACGTGATCGAAGTTGTCGGGTACG
1 AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACA
*
69240451 CATAGTAGCCTGCACTTAGTACTACACATGTGACCT
64 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
69240487 A
1 A
69240488 GCTACATATA
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 41 0.47
100 3 0.03
101 44 0.50
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (99 bp):
AACTATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACA
TAGTAGCCTGCACTTAGTACTACACACGTGACCT
Found at i:69241329 original size:30 final size:30
Alignment explanation
Indices: 69241293--69241353 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
69241283 TCCTTAACTC
69241293 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
69241323 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
69241353 A
1 A
69241354 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:69246431 original size:28 final size:28
Alignment explanation
Indices: 69246398--69246460 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
69246388 CCCTTTAGGG
*
69246398 CCAATCTCATTCATATGGCCCATCAGGC
1 CCAATCTCATTCATATGGCCCATCAAGC
* **
69246426 CCAATCACATTCATATGGCCTGTCAAGC
1 CCAATCTCATTCATATGGCCCATCAAGC
69246454 CCAATCT
1 CCAATCT
69246461 ATAACAGCCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.27, C:0.35, G:0.13, T:0.25
Consensus pattern (28 bp):
CCAATCTCATTCATATGGCCCATCAAGC
Found at i:69249889 original size:17 final size:18
Alignment explanation
Indices: 69249867--69249902 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
69249857 TTTCCTACTA
69249867 TGGGCCC-TATAGCCCAT
1 TGGGCCCATATAGCCCAT
*
69249884 TGGGCCCATTTAGCCCAT
1 TGGGCCCATATAGCCCAT
69249902 T
1 T
69249903 CTAGCCCGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.17, C:0.33, G:0.22, T:0.28
Consensus pattern (18 bp):
TGGGCCCATATAGCCCAT
Found at i:69253118 original size:8 final size:8
Alignment explanation
Indices: 69253105--69253129 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
69253095 ACACTCTAAC
69253105 TGGCCCGG
1 TGGCCCGG
69253113 TGGCCCGG
1 TGGCCCGG
69253121 TGGCCCGG
1 TGGCCCGG
69253129 T
1 T
69253130 CTAAGCTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.36, G:0.48, T:0.16
Consensus pattern (8 bp):
TGGCCCGG
Found at i:69261623 original size:16 final size:16
Alignment explanation
Indices: 69261577--69261627 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
69261567 AAATTATATA
69261577 TTCCATCATTCTAATT
1 TTCCATCATTCTAATT
* *
69261593 TTCTATC-TCTTTAATT
1 TTCCATCAT-TCTAATT
69261609 TTCCATCATTCTAATT
1 TTCCATCATTCTAATT
69261625 TTC
1 TTC
69261628 TTTCCACTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
15 1 0.03
16 27 0.93
17 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.55
Consensus pattern (16 bp):
TTCCATCATTCTAATT
Found at i:69269859 original size:40 final size:40
Alignment explanation
Indices: 69269758--69269954 Score: 225
Period size: 40 Copynumber: 4.9 Consensus size: 40
69269748 TATTCGAATG
* * *
69269758 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTGACT
* * * *
69269799 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * *
69269839 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
* * * * *
69269879 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTTACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
*
69269919 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
69269955 GTTATATCTG
Statistics
Matches: 129, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 8 0.06
40 94 0.73
41 27 0.21
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGACT
Found at i:69269916 original size:80 final size:81
Alignment explanation
Indices: 69269758--69269942 Score: 257
Period size: 80 Copynumber: 2.3 Consensus size: 81
69269748 TATTCGAATG
* * * *
69269758 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCTGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
* *
69269823 ATTTGTGCGAGTTACT
66 ATTTATGCGAGTTACC
* * *
69269839 ATATCCGGGCCAAAACCCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGAT-CCGAAGG
*
69269902 CATTTATGCTAGTTACC
65 CATTTATGCGAGTTACC
69269919 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
69269943 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 1 0.01
80 61 0.67
81 29 0.32
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAAGCGACTATATCCGGACTAAGATCCGAAGGC
ATTTATGCGAGTTACC
Found at i:69273216 original size:17 final size:17
Alignment explanation
Indices: 69273194--69273227 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
69273184 ATTTCAGCCT
69273194 CAGTTAGAACCCATTCC
1 CAGTTAGAACCCATTCC
69273211 CAGTTAGAACCCATTCC
1 CAGTTAGAACCCATTCC
69273228 TTAGCATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.35, G:0.12, T:0.24
Consensus pattern (17 bp):
CAGTTAGAACCCATTCC
Found at i:69276172 original size:20 final size:20
Alignment explanation
Indices: 69276138--69276187 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
69276128 TTTCCAGCAC
*
69276138 ATTTATTCATAAAATTTTAGA
1 ATTT-TTCATAAAATTTTACA
*
69276159 ATTTTTCATCAAATTTTACA
1 ATTTTTCATAAAATTTTACA
*
69276179 ACTTTTCAT
1 ATTTTTCAT
69276188 TTTAGTCCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTTTTCATAAAATTTTACA
Found at i:69279059 original size:45 final size:45
Alignment explanation
Indices: 69278988--69279195 Score: 263
Period size: 45 Copynumber: 4.6 Consensus size: 45
69278978 TGCCAAGATG
* *
69278988 AGTAAGACCATAGCTGAAAGATGCTATAGCATCATGATAAAAATA
1 AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
* * * * * **
69279033 ATTAAGATCATAACCGAAAGACGCTATGGCATTGTGACAAAAATA
1 AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
* * * *
69279078 AGTAAAACCATAGCTGAAAGATGCTATGGTATCATGATAAAAATG
1 AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
* *
69279123 AGTAAGACCATAGCTGAAAGATGCTATGACATCATGACAAAAATG
1 AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
* *
69279168 AGTAAGACCATAGCTAAAAGATGTTATG
1 AGTAAGACCATAGCTGAAAGATGCTATG
69279196 ACATGATATG
Statistics
Matches: 137, Mismatches: 26, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 137 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTAAGACCATAGCTGAAAGATGCTATGGCATCATGACAAAAATA
Found at i:69279398 original size:27 final size:27
Alignment explanation
Indices: 69279347--69279398 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
69279337 TCATAGATAG
* **
69279347 TTCGATGGGATAATAAACATGAGATTT
1 TTCGATGGGACAATAAACACAAGATTT
*
69279374 TTCGATGGGACATTAAACACAAGAT
1 TTCGATGGGACAATAAACACAAGAT
69279399 AGTCCACTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (27 bp):
TTCGATGGGACAATAAACACAAGATTT
Found at i:69281576 original size:53 final size:54
Alignment explanation
Indices: 69281396--69281607 Score: 214
Period size: 53 Copynumber: 3.9 Consensus size: 54
69281386 ATTAGGGTTT
* ** * * *
69281396 AAGGATACCAAGTAAGACCATGCCAAGGTATGGCATTGGCAAGTTCTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * *
69281450 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * *
69281505 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
** *
69281558 AAGGATACCATGTAAGACCATATCAAGACATGGAAATGGTAAGTT-TATAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAA
69281608 AGGAAAGGTA
Statistics
Matches: 127, Mismatches: 27, Indels: 9
0.78 0.17 0.06
Matches are distributed among these distances:
52 4 0.03
53 45 0.35
54 35 0.28
55 39 0.31
56 4 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:69285544 original size:27 final size:27
Alignment explanation
Indices: 69285514--69285691 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
69285504 ATATTGAGTC
* *
69285514 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
69285541 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
69285568 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
69285596 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
69285623 TGCACACTTAGTGCATCACAT--TCATTT
1 CGCACACTTAGTGC-T-ACATAATCAACT
* * *
69285650 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
69285677 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69285692 GTACAATTTA
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
25 4 0.03
27 96 0.76
28 23 0.18
29 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:69289565 original size:18 final size:18
Alignment explanation
Indices: 69289542--69289578 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
69289532 CTAAGTATGA
69289542 CATATTAATAATACAGTC
1 CATATTAATAATACAGTC
69289560 CATATTAATAATACAGTC
1 CATATTAATAATACAGTC
69289578 C
1 C
69289579 GTGGAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.32
Consensus pattern (18 bp):
CATATTAATAATACAGTC
Found at i:69296273 original size:27 final size:27
Alignment explanation
Indices: 69296243--69296425 Score: 136
Period size: 27 Copynumber: 6.8 Consensus size: 27
69296233 CGACTTGTAA
** * *
69296243 AATTACTAAAGTACCCTTGATTTACAT
1 AATTACTAATTTACCCTCGATTTACAG
69296270 AATTATCGT--TTTACCCTCGATTTACAG
1 AATTA-C-TAATTTACCCTCGATTTACAG
*** * *
69296297 AATTACCGTTTTACCCTCGATATATAG
1 AATTACTAATTTACCCTCGATTTACAG
* * *
69296324 AATTACTATTTTACCCTTGATTTATAG
1 AATTACTAATTTACCCTCGATTTACAG
* *
69296351 AATTACTATTTTACCCTCGATTTACAA
1 AATTACTAATTTACCCTCGATTTACAG
** * * *
69296378 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACTAATTTACCCTCGATTTACAG
* **
69296405 AATTACCAAAATACCCTCGAT
1 AATTACTAATTTACCCTCGAT
69296426 CAGTAAAATT
Statistics
Matches: 130, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 127 0.98
28 1 0.01
29 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.38
Consensus pattern (27 bp):
AATTACTAATTTACCCTCGATTTACAG
Found at i:69296312 original size:54 final size:54
Alignment explanation
Indices: 69296254--69296412 Score: 158
Period size: 54 Copynumber: 2.9 Consensus size: 54
69296244 ATTACTAAAG
* * * *
69296254 TACCCTTGATTTACATAATTA-TCGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACT-ATTTTACCCTCGATTTACAGAATTACCATTT
* * * * * *
69296308 TACCCTCGATATATAGAATTACTATTTTACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
*** * * *
69296362 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCA
69296413 AAATACCCTC
Statistics
Matches: 85, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
54 84 0.99
55 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:69296433 original size:27 final size:27
Alignment explanation
Indices: 69296362--69296608 Score: 182
Period size: 27 Copynumber: 9.2 Consensus size: 27
69296352 ATTACTATTT
** *
69296362 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * **
69296389 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
**
69296416 TACCCTCGATCAGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* * * *
69296443 TACCCT-GGTCTGT-AAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* *
69296468 TATTCCT-GGTTTGTAAAATTACCAAAA
1 TA-CCCTCGATTTGTAAAATTACCAAAA
*
69296495 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAA
* * * *
69296522 TAGCACTAG-TTTGTGAAATTACCGAAA
1 TA-CCCTCGATTTGTAAAATTACCAAAA
* *
69296549 TACTCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAA
* ** *
69296576 TATCCCT-AATTTACAAAATTACAAAAA
1 TA-CCCTCGATTTGTAAAATTACCAAAA
69296603 TACCCT
1 TACCCT
69296609 TAACTTTCTA
Statistics
Matches: 178, Mismatches: 34, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
25 12 0.07
26 23 0.13
27 138 0.78
28 5 0.03
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCAAAA
Found at i:69296486 original size:79 final size:79
Alignment explanation
Indices: 69296377--69296523 Score: 199
Period size: 79 Copynumber: 1.9 Consensus size: 79
69296367 TCGATTTACA
69296377 AAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAA
1 AAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CGAGTCAGTAAAATTACCAA
69296441 AATACCCTGGTCTGT
65 AATACCCTGGTCTGT
* * ** * **
69296456 AAATTGCTAAAATATTCC-TGGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAA
1 AAATTACTAAAATA-CCCTTGGTTTACAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAA
69296520 AATA
65 AATA
69296524 GCACTAGTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.03
79 55 0.93
80 2 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (79 bp):
AAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCGAGTCAGTAAAATTACCAAA
ATACCCTGGTCTGT
Found at i:69296658 original size:27 final size:27
Alignment explanation
Indices: 69296619--69296670 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
69296609 TAACTTTCTA
69296619 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
69296646 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
69296671 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:69296773 original size:27 final size:26
Alignment explanation
Indices: 69296711--69296784 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 26
69296701 AAATGACTAA
69296711 AATACCCCTATTAGGTAAAAAGACCGT
1 AATACCCCTA-TAGGTAAAAAGACCGT
* **
69296738 AA-AGACCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATA-GGTAAAAAGACCGT
*
69296765 AATACCCCTGTATGGTAAAA
1 AATACCCCTATA-GGTAAAA
69296785 TGATGAATAC
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
26 3 0.08
27 33 0.89
28 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (26 bp):
AATACCCCTATAGGTAAAAAGACCGT
Found at i:69297679 original size:24 final size:25
Alignment explanation
Indices: 69297597--69297690 Score: 136
Period size: 25 Copynumber: 3.8 Consensus size: 25
69297587 AGGAAGTGCT
* *
69297597 AAAAGGGCTATGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
* *
69297622 AAAAGGGCTTTACCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
69297647 AAAAGGGCTTTGCCCTAGTTTATC-
1 AAAAGGGCTTTGCCCCAGTTTATCA
69297671 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69297691 ATTAAAAGAG
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
24 19 0.31
25 42 0.69
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:69297971 original size:31 final size:31
Alignment explanation
Indices: 69297904--69298077 Score: 250
Period size: 31 Copynumber: 5.7 Consensus size: 31
69297894 CGTTTACAGT
*
69297904 AAAGGCTTCGGCCCAATGATATGATTTAT-A
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
69297934 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
69297965 AAAGGCTTCGGCCCAGAGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
69297996 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* **
69298027 AAAGGCTTCGGCCCAGT-A-ATCG-TTAAACA
1 AAAGGCTTCGGCCCAGTGATAT-GATTTATGA
69298056 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
69298078 CCAAGACTAA
Statistics
Matches: 133, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
29 25 0.19
30 32 0.24
31 76 0.57
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:69301537 original size:40 final size:40
Alignment explanation
Indices: 69301501--69301844 Score: 386
Period size: 40 Copynumber: 8.6 Consensus size: 40
69301491 CATGATTACT
* * * * *
69301501 CATATGTGCCCCTGTTTGTACTTCGATACCCTTGATTGCG
1 CATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCA
* * * *
69301541 GATGCGTGCCCCTATTTGTACTTTGGTGCCCCTGATTGCA
1 CATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCA
* * *
69301581 CATACGTGCCCTTGTTTGTACTTCGGTACTCCTGATTGCA
1 CATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCA
* * * *
69301621 CATACGTGCCCTTGTTTGTACTTTGATACCCCTGATTGCA
1 CATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCA
* *
69301661 CATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCA
1 CATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCA
* * * *
69301701 CATAAGTGCCCCTATTTATATTTCGGTACCCTTGATTGCA
1 CATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCA
* * *
69301741 CATATGTGTCCCC-ATTTGTACTTCAGTACCCCTGATTACA
1 CATACGTG-CCCCTATTTGTACTTCGGTACCCCTGATTGCA
** *
69301781 CATACGTGCCCCTATTTGTACTTTAGTACCCCTGACTGCA
1 CATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCA
* * *
69301821 -ATACATGCCCTTGTTTGTACTTCG
1 CATACGTGCCCCTATTTGTACTTCG
69301845 ATATCTCTAG
Statistics
Matches: 260, Mismatches: 42, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
39 23 0.09
40 233 0.90
41 4 0.02
ACGTcount: A:0.17, C:0.28, G:0.18, T:0.36
Consensus pattern (40 bp):
CATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCA
Found at i:69301589 original size:20 final size:20
Alignment explanation
Indices: 69301566--69301713 Score: 93
Period size: 20 Copynumber: 7.4 Consensus size: 20
69301556 TTGTACTTTG
69301566 GTGCCCCTGATTGCACATAC
1 GTGCCCCTGATTGCACATAC
* * * *
69301586 GTGCCCTTGTTTGTAC-TTC
1 GTGCCCCTGATTGCACATAC
* *
69301605 GGTACTCCTGATTGCACATAC
1 -GTGCCCCTGATTGCACATAC
* * * **
69301626 GTGCCCTTGTTTGTAC-TTT
1 GTGCCCCTGATTGCACATAC
*
69301645 GATACCCCTGATTGCACATAC
1 G-TGCCCCTGATTGCACATAC
* * * **
69301666 GTGCCCCTGTTTGTACTTTG
1 GTGCCCCTGATTGCACATAC
* *
69301686 GTACCCCTGATTGCACATAA
1 GTGCCCCTGATTGCACATAC
69301706 GTGCCCCT
1 GTGCCCCT
69301714 ATTTATATTT
Statistics
Matches: 88, Mismatches: 36, Indels: 8
0.67 0.27 0.06
Matches are distributed among these distances:
19 4 0.05
20 80 0.91
21 4 0.05
ACGTcount: A:0.16, C:0.30, G:0.20, T:0.34
Consensus pattern (20 bp):
GTGCCCCTGATTGCACATAC
Found at i:69301629 original size:80 final size:80
Alignment explanation
Indices: 69301501--69301844 Score: 433
Period size: 80 Copynumber: 4.3 Consensus size: 80
69301491 CATGATTACT
* * * ** *
69301501 CATATGTGCCCCTGTTTGTACTTCGATACCCTTGATTGCGGATGCGTGCCCCTATTTGTACTTTG
1 CATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTG
*
69301566 GTGCCCCTGATTGCA
66 GTACCCCTGATTGCA
* * * *
69301581 CATACGTGCCCTTGTTTGTACTTCGGTACTCCTGATTGCACATACGTGCCCTTGTTTGTACTTTG
1 CATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTG
*
69301646 ATACCCCTGATTGCA
66 GTACCCCTGATTGCA
* * *
69301661 CATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCACATAAGTGCCCCTATTTATA-TTTC
1 CATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTTGTACTTT-
*
69301725 GGTACCCTTGATTGCA
65 GGTACCCCTGATTGCA
* * * *
69301741 CATATGTGTCCCC-ATTTGTACTTCAGTACCCCTGATTACACATACGTGCCCCTATTTGTACTTT
1 CATACGTG-CCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTTGTACTTT
* *
69301805 AGTACCCCTGACTGCA
65 GGTACCCCTGATTGCA
* *
69301821 -ATACATGCCCTTGTTTGTACTTCG
1 CATACGTGCCCCTGTTTGTACTTCG
69301845 ATATCTCTAG
Statistics
Matches: 224, Mismatches: 36, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
78 3 0.01
79 18 0.08
80 196 0.88
81 7 0.03
ACGTcount: A:0.17, C:0.28, G:0.18, T:0.36
Consensus pattern (80 bp):
CATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTG
GTACCCCTGATTGCA
Found at i:69301710 original size:120 final size:119
Alignment explanation
Indices: 69301501--69301844 Score: 435
Period size: 120 Copynumber: 2.9 Consensus size: 119
69301491 CATGATTACT
* * ** *
69301501 CATATGTGCCCCTGTTTGTACTTCGATACCCTTGATTGCGGATGCGTGCCCCTATTTGTACTTTG
1 CATATGTG-CCCTGTTTGTACTTTGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTG
* *
69301566 GTGCCCCTGATTGCACATACGTGCCCTTGTTTGTACTTCGGTACTCC-TGATTGCA
65 GTACCCCTGATTGCACATAAGTGCCCTTGTTTGTACTTCGGTAC-CCTTGATTGCA
* *
69301621 CATACGTGCCCTTGTTTGTACTTTGATACCCCTGATTGCACATACGTGCCCCTGTTTGTACTTTG
1 CATATGTGCCC-TGTTTGTACTTTGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTG
* * * *
69301686 GTACCCCTGATTGCACATAAGTGCCCCTATTTATATTTCGGTACCCTTGATTGCA
65 GTACCCCTGATTGCACATAAGTGCCCTTGTTTGTACTTCGGTACCCTTGATTGCA
** * *
69301741 CATATGTGTCCCCATTTGTAC-TTCAGTACCCCTGATTACACATACGTGCCCCTATTTGTACTTT
1 CATATGTG-CCCTGTTTGTACTTTGA-TACCCCTGATTGCACATACGTGCCCCTATTTGTACTTT
* *
69301805 AGTACCCCTGACTGCA-ATACA-TGCCCTTGTTTGTACTTCG
64 GGTACCCCTGATTGCACATA-AGTGCCCTTGTTTGTACTTCG
69301845 ATATCTCTAG
Statistics
Matches: 194, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
119 26 0.13
120 165 0.85
121 3 0.02
ACGTcount: A:0.17, C:0.28, G:0.18, T:0.36
Consensus pattern (119 bp):
CATATGTGCCCTGTTTGTACTTTGATACCCCTGATTGCACATACGTGCCCCTATTTGTACTTTGG
TACCCCTGATTGCACATAAGTGCCCTTGTTTGTACTTCGGTACCCTTGATTGCA
Found at i:69309096 original size:22 final size:22
Alignment explanation
Indices: 69309068--69309111 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
69309058 TCTACGTGTG
69309068 TGTTTACTACCATGCATACTAA
1 TGTTTACTACCATGCATACTAA
69309090 TGTTTACTACCATGCATACTAA
1 TGTTTACTACCATGCATACTAA
69309112 CTTGAAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (22 bp):
TGTTTACTACCATGCATACTAA
Found at i:69310181 original size:28 final size:27
Alignment explanation
Indices: 69310126--69310242 Score: 112
Period size: 28 Copynumber: 4.3 Consensus size: 27
69310116 AGCATGGCTG
* * * *
69310126 CCAGAACAGATA-TTGTGACAGAGTCA
1 CCAGAATAGATATTTGTGGCAGTGCCA
* *
69310152 CCAGATACAGATATTTGTGGTAGTGCCA
1 CCAGA-ATAGATATTTGTGGCAGTGCCA
* *
69310180 CCAGAATTAGATATTTGGGGCAGAGCCA
1 CCAGAA-TAGATATTTGTGGCAGTGCCA
69310208 CCAGAAATAGATATTTGTGGCA-TAGCCA
1 CCAG-AATAGATATTTGTGGCAGT-GCCA
69310236 CCAGAAT
1 CCAGAAT
69310243 GCTTCCTCTA
Statistics
Matches: 76, Mismatches: 10, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
26 5 0.07
27 11 0.14
28 58 0.76
29 2 0.03
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (27 bp):
CCAGAATAGATATTTGTGGCAGTGCCA
Found at i:69322581 original size:43 final size:43
Alignment explanation
Indices: 69322532--69322687 Score: 222
Period size: 43 Copynumber: 3.6 Consensus size: 43
69322522 TAGAATTTTT
* * *
69322532 GATATGTGATTACGTGTAAGAGCACGTTTGGGGCATTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATC
* * *
69322575 GATATGTGATTATGTGTAAGGCCACATCTGGGACATTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATC
* *
69322618 GATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATC
* *
69322661 AATATGTGATTACGAGTAAGACCACGT
1 GATATGTGATTACGTGTAAGACCACGT
69322688 TTAATGCGTT
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 98 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCATC
Found at i:69322704 original size:86 final size:86
Alignment explanation
Indices: 69322532--69322714 Score: 215
Period size: 86 Copynumber: 2.1 Consensus size: 86
69322522 TAGAATTTTT
* * * * * * * *
69322532 GATATGTGATTACGTGTAAGAGCACGTTTGGGGCATTGGCATCGATATGTGATTATGTGTAAGGC
1 GATATATGATTACGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTACGAGTAAGAC
* *
69322597 CACATCTGGGACATTGGCATC
66 CACATCTAGGACATTGCCATC
*
69322618 GATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCATCAATATGTGATTACGAGTAAGAC
1 GATATATGATTACGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTACGAGTAAGAC
* * * *
69322683 CACGTTTAATG-CGTTGCCATC
66 CACATCT-AGGACATTGCCATC
69322704 GATATATGATT
1 GATATATGATT
69322715 CTGATATGTG
Statistics
Matches: 81, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
86 80 0.99
87 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (86 bp):
GATATATGATTACGTGTAAGACCACGTCTGGGACATTGGCATCAATATGTGATTACGAGTAAGAC
CACATCTAGGACATTGCCATC
Found at i:69322714 original size:43 final size:43
Alignment explanation
Indices: 69322532--69322714 Score: 143
Period size: 43 Copynumber: 4.3 Consensus size: 43
69322522 TAGAATTTTT
* * * * * * *
69322532 GATATGTGATTACGTGTAAGAGCACGTTTGGGGCATTGGCATC
1 GATATATGATTACGAGTAAGACCACGTCTAGGACATTGCCATC
* * * * * * *
69322575 GATATGTGATTATGTGTAAGGCCACATCTGGGACATTGGCATC
1 GATATATGATTACGAGTAAGACCACGTCTAGGACATTGCCATC
* * * *
69322618 GATATATGATTACGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATATATGATTACGAGTAAGACCACGTCTAGGACATTGCCATC
* * * * *
69322661 AATATGTGATTACGAGTAAGACCACGTTTAATG-CGTTGCCATC
1 GATATATGATTACGAGTAAGACCACGTCT-AGGACATTGCCATC
69322704 GATATATGATT
1 GATATATGATT
69322715 CTGATATGTG
Statistics
Matches: 117, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
43 116 0.99
44 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
GATATATGATTACGAGTAAGACCACGTCTAGGACATTGCCATC
Found at i:69322770 original size:56 final size:56
Alignment explanation
Indices: 69322673--69322851 Score: 214
Period size: 56 Copynumber: 3.2 Consensus size: 56
69322663 TATGTGATTA
** ** * *
69322673 CGAGTAAGACCACGTTTAATGCGTTGCCATCGATATATGATTCTGATATGTGTGTG
1 CGAGTAAGACCATATTTAATATGTTGGCATCGATATGTGATTCTGATATGTGTGTG
* * * *
69322729 CAAGTAAGACCATATTTAGTATGTTGGCATCAATATGTGATTTTGATATGTGTGTG
1 CGAGTAAGACCATATTTAATATGTTGGCATCGATATGTGATTCTGATATGTGTGTG
* * ** * *
69322785 CGAGTAAGACCATGTTTAATATGTTGGCATCGATAGGTGATTCCAATATGTGTTTA
1 CGAGTAAGACCATATTTAATATGTTGGCATCGATATGTGATTCTGATATGTGTGTG
69322841 CGAGTAAGACC
1 CGAGTAAGACC
69322852 CTGTCTGGGA
Statistics
Matches: 103, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 103 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (56 bp):
CGAGTAAGACCATATTTAATATGTTGGCATCGATATGTGATTCTGATATGTGTGTG
Found at i:69325525 original size:30 final size:30
Alignment explanation
Indices: 69325491--69325552 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
69325481 TTCTCGAGCC
*
69325491 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
* * * *
69325521 TAGGGGCAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
69325551 TA
1 TA
69325553 AGTTACGGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.44, C:0.03, G:0.24, T:0.29
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGAAAAAGTT
Found at i:69330772 original size:64 final size:64
Alignment explanation
Indices: 69330691--69330873 Score: 174
Period size: 67 Copynumber: 2.8 Consensus size: 64
69330681 AGACATTATG
* * ** *
69330691 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGAGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAAATAA
* * * * * *
69330755 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAAAGCTACGAAAT
1 ATGTAGCTAGGTCGCATGAGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAAAT
69330820 AA
63 AA
* * *
69330822 AT-TGGCTAGGTCACATGAGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGAGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
69330874 TCGAACTATA
Statistics
Matches: 95, Mismatches: 19, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 17 0.18
64 25 0.26
66 21 0.22
67 31 0.33
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGAGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAAATAA
Found at i:69339833 original size:46 final size:45
Alignment explanation
Indices: 69339777--69340045 Score: 220
Period size: 46 Copynumber: 5.8 Consensus size: 45
69339767 TATTTGGGCA
69339777 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *** * * *
69339823 TCTGAACTCGTTGAGTTCATTCCGAGTTCGAGAGATGTAACTACGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAAG
*
69339870 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
69339916 TCTGAACTCGTTGAGTAGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
69339963 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
69340009 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69340046 GTGGGTTACA
Statistics
Matches: 171, Mismatches: 40, Indels: 24
0.73 0.17 0.10
Matches are distributed among these distances:
43 1 0.01
44 7 0.04
45 2 0.01
46 92 0.54
47 59 0.35
48 2 0.01
49 7 0.04
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:69339885 original size:47 final size:47
Alignment explanation
Indices: 69339829--69339991 Score: 179
Period size: 47 Copynumber: 3.5 Consensus size: 47
69339819 AATGTCTGAA
* *
69339829 CTCGTTGAGTTCATTCCGAGTTCGAGAGATGTAACTACGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTACGCATCCGAG
*** * * * * *
69339876 CTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAATGTCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTACGCA--TCCGAG
* *
69339922 CTCGTTGAGTAGAGTCCGAGTTCGAGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTACGCATCCGAG
69339969 CTCGTTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
69339992 ACTTGTGGAT
Statistics
Matches: 90, Mismatches: 21, Indels: 10
0.74 0.17 0.08
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 30 0.33
47 51 0.57
48 1 0.01
49 3 0.03
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTACGCATCCGAG
Found at i:69339940 original size:93 final size:93
Alignment explanation
Indices: 69339774--69340038 Score: 431
Period size: 93 Copynumber: 2.8 Consensus size: 93
69339764 GGATATTTGG
*
69339774 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
* *
69339839 TCATTCCGAGTTCGAGAGATGTAACTAC
66 TGAGTCCGAGTTCGAGAGATGTAACTAC
69339867 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
* *
69339932 AGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAC
* * * * * *
69339960 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
69340025 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
69340039 CTTATGGGTG
Statistics
Matches: 160, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 160 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAC
Found at i:69347742 original size:46 final size:44
Alignment explanation
Indices: 69347691--69347805 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 44
69347681 GATGAATGCT
* *
69347691 AGTGTAAGATATGTCTGGGACATGCATCAGCCT-CGAGACGTAATTC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCTACGAGACGT--GTC
* * * *
69347737 AGTGTAAGACATGTCTGAGACAAGCATCGGCTATGAGACGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGACGTGTC
69347781 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
69347806 GGATCGGCAC
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
44 11 0.19
45 16 0.27
46 32 0.54
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCTACGAGACGTGTC
Found at i:69353769 original size:300 final size:300
Alignment explanation
Indices: 69353227--69353827 Score: 1139
Period size: 300 Copynumber: 2.0 Consensus size: 300
69353217 ACAAGGTTGA
*
69353227 GTTTTAGCACAGCTTTTCACTCGCAAACAGACGGCCAGTCAGAAAGAGTGATTTAGATTTTAGAA
1 GTTTTAGCACAGCTTTTCACTCGCAAACAGACGGCCAGTCAGAAAGAGTGATTCAGATTTTAGAA
69353292 GACATGTTGCGGTGTTGTGTTCTCAAGTTTCAAGGCAGTTGGCAAAGGTATTTGCCATTGGTTGA
66 GACATGTTGCGGTGTTGTGTTCTCAAGTTTCAAGGCAGTTGGCAAAGGTATTTGCCATTGGTTGA
69353357 ATTCGCCTACAACAACAGTTATCAGACAAGTTTGAAGATGGCGCCTTATGGGGTTTTTTATGGAC
131 ATTCGCCTACAACAACAGTTATCAGACAAGTTTGAAGATGGCGCCTTATGGGGTTTTTTATGGAC
* *
69353422 GAAAGTGTCGAACGCCCTTATATTGGACAGATCTCAAAGAGAGTCAGATTCATAGAGTCGATTTA
196 GAAAGTGTCGAACGCCCTTATATTGGACAGAACTCAAAGAGAGTCAGATTCATAGAGTCAATTTA
69353487 ATCAAAAAGACTGAAGAGAAAGTTAAAGTGATTTGTGACT
261 ATCAAAAAGACTGAAGAGAAAGTTAAAGTGATTTGTGACT
*
69353527 GTTTTAGCACAGCTTTTCACTCGCAAACAGACGGCCAGTCGGAAAGAGTGATTCAGATTTTAGAA
1 GTTTTAGCACAGCTTTTCACTCGCAAACAGACGGCCAGTCAGAAAGAGTGATTCAGATTTTAGAA
*
69353592 GACATGTTGCGGTGTTGTGTTCTCAAGTTTCAAGGCAGTTGGGAAAGGTATTTGCCATTGGTTGA
66 GACATGTTGCGGTGTTGTGTTCTCAAGTTTCAAGGCAGTTGGCAAAGGTATTTGCCATTGGTTGA
* *
69353657 ATTCGCCTACAACAATAGTTATCAGACAAGTTTGAAGATGGCGCCTTATGGGGTTTTTTATGGAT
131 ATTCGCCTACAACAACAGTTATCAGACAAGTTTGAAGATGGCGCCTTATGGGGTTTTTTATGGAC
69353722 GAAAGTGTCGAACGCCCTTATATTGGACAGAACTCAAAGAGAGTCAGATTCATAGAGTCAATTTA
196 GAAAGTGTCGAACGCCCTTATATTGGACAGAACTCAAAGAGAGTCAGATTCATAGAGTCAATTTA
69353787 ATCAAAAAGACTGAAGAGAAAGTTAAAGTGATTTGTGACT
261 ATCAAAAAGACTGAAGAGAAAGTTAAAGTGATTTGTGACT
69353827 G
1 G
69353828 CTTAAAGGCC
Statistics
Matches: 294, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
300 294 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (300 bp):
GTTTTAGCACAGCTTTTCACTCGCAAACAGACGGCCAGTCAGAAAGAGTGATTCAGATTTTAGAA
GACATGTTGCGGTGTTGTGTTCTCAAGTTTCAAGGCAGTTGGCAAAGGTATTTGCCATTGGTTGA
ATTCGCCTACAACAACAGTTATCAGACAAGTTTGAAGATGGCGCCTTATGGGGTTTTTTATGGAC
GAAAGTGTCGAACGCCCTTATATTGGACAGAACTCAAAGAGAGTCAGATTCATAGAGTCAATTTA
ATCAAAAAGACTGAAGAGAAAGTTAAAGTGATTTGTGACT
Found at i:69355638 original size:46 final size:46
Alignment explanation
Indices: 69355493--69355705 Score: 156
Period size: 46 Copynumber: 4.6 Consensus size: 46
69355483 ATTGTGAGCT
* ** *
69355493 AGTGTAAGACATGTCTTGGACATGCATCGACCAC-A-TTGTGAGAGCC
1 AGTGTAAGACATGT-TTGGACATGCATCGACCTCGAGACGT-AGAGTC
* * * * *
69355539 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACGATTG-TTC
1 AGTGTAAGA-CATGTTT-GGACAT-GCATCGACCTCGAGACG-TAGAGTC
69355588 -GTGTAAGACATGTTTAGGACATGCATCGACCTCGAGACGTA-AGTC
1 AGTGTAAGACATGTTT-GGACATGCATCGACCTCGAGACGTAGAGTC
* *
69355633 AGTGTAAGACATGTTTGGGACATGCATCG-GCTACGAGACGT---GTT
1 AGTGTAAGACATGTTT-GGACATGCATCGACCT-CGAGACGTAGAGTC
69355677 AGTGTAAGACTATGTCTTGGACATTGCAT
1 AGTGTAAGAC-ATGT-TTGGACA-TGCAT
69355706 TGGCACAGCT
Statistics
Matches: 137, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
44 12 0.09
45 14 0.10
46 67 0.49
47 24 0.18
48 15 0.11
49 2 0.01
50 2 0.01
51 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (46 bp):
AGTGTAAGACATGTTTGGACATGCATCGACCTCGAGACGTAGAGTC
Found at i:69356925 original size:21 final size:22
Alignment explanation
Indices: 69356886--69356926 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
69356876 TCAAATTGTT
*
69356886 CACACGGGCGTGTTGCCCCTTC
1 CACACGGCCGTGTTGCCCCTTC
69356908 CACACGGCCGTG-TGCCCCT
1 CACACGGCCGTGTTGCCCCT
69356927 GTGTCAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.44, G:0.27, T:0.20
Consensus pattern (22 bp):
CACACGGCCGTGTTGCCCCTTC
Found at i:69366423 original size:18 final size:20
Alignment explanation
Indices: 69366387--69366433 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
69366377 AGTTGTAAGT
69366387 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
69366407 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
69366426 ATGATATA
1 AT-ATATA
69366434 ACCTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:69368226 original size:40 final size:40
Alignment explanation
Indices: 69368180--69368337 Score: 228
Period size: 40 Copynumber: 4.0 Consensus size: 40
69368170 CGGGATTTAA
69368180 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
69368220 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
69368260 TCGGATATAATC-GCTAGCATAAATGCCTTCGGGTCATAGC
1 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGC
* * *
69368300 CCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTA
1 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTA
69368338 TTCTGGTTAT
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:69376518 original size:40 final size:40
Alignment explanation
Indices: 69376463--69376620 Score: 237
Period size: 40 Copynumber: 4.0 Consensus size: 40
69376453 AGGATTTAAT
69376463 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
69376503 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * * *
69376543 CGGATATAATC-GCTAGCATAAATGCCTTCGGGTCATAGCC
1 CGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAGCC
* * *
69376583 CGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAG
1 CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAG
69376621 TCTGGTTATC
Statistics
Matches: 105, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.01
40 103 0.98
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCC
Found at i:69378605 original size:32 final size:32
Alignment explanation
Indices: 69378559--69378621 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
69378549 GGGCTGTCAC
*
69378559 AGTGCAGGCCACTACGTGCACCGGATTGATAA
1 AGTGCAGGCCACTACGTGCACCAGATTGATAA
* *
69378591 AGTGCAGGCTACTACGTGTACCAGATTGATA
1 AGTGCAGGCCACTACGTGCACCAGATTGATA
69378622 GGTCGCATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (32 bp):
AGTGCAGGCCACTACGTGCACCAGATTGATAA
Found at i:69378791 original size:50 final size:50
Alignment explanation
Indices: 69378590--69378805 Score: 218
Period size: 50 Copynumber: 4.3 Consensus size: 50
69378580 CGGATTGATA
*
69378590 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTACT
1 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACT
* ** * * * * * *
69378640 AAGTGAAGGCTACTTTGCGTTCCCG-TTAACTTCGATCACATGTGTAGTACT
1 AAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCACATGTGTAGTACT
* ** * * * *
69378691 AAGTGTAGGCTACTACGTGTATGAGATGGATAAGTCACGTGTGTATTACT
1 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACT
* * *
69378741 AAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGCAGTACT
1 AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACT
*
69378791 AAGTGCAGGTTACTA
1 AAGTGCAGGCTACTA
69378806 TTGATACGTG
Statistics
Matches: 126, Mismatches: 37, Indels: 6
0.75 0.22 0.04
Matches are distributed among these distances:
49 3 0.02
50 87 0.69
51 34 0.27
52 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACATGTGTAGTACT
Found at i:69381899 original size:26 final size:25
Alignment explanation
Indices: 69381870--69381927 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
69381860 ATAAAACCTA
*
69381870 AAAATGAAATAGTA-TTAAATGAAAAT
1 AAAAT-AAAAAGTACTTAAA-GAAAAT
*
69381896 AAAATAAAAAGTACTTAAAGAAGAT
1 AAAATAAAAAGTACTTAAAGAAAAT
69381921 -AAATAAA
1 AAAATAAA
69381928 GATAAAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 7 0.24
25 12 0.41
26 10 0.34
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (25 bp):
AAAATAAAAAGTACTTAAAGAAAAT
Found at i:69381922 original size:25 final size:25
Alignment explanation
Indices: 69381870--69381953 Score: 70
Period size: 26 Copynumber: 3.4 Consensus size: 25
69381860 ATAAAACCTA
*
69381870 AAAATGAAATAGTATTAAATGAAAAT
1 AAAAT-AAAAAGTATTAAATGAAAAT
*
69381896 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAAAT
*
69381921 -AAAT--AAAG-ATAAAAGTGAAAAT
1 AAAATAAAAAGTATTAAA-TGAAAAT
69381943 AAAAATAAAAA
1 -AAAATAAAAA
69381954 ATAAAAAGTC
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
20 4 0.09
21 1 0.02
22 9 0.19
24 8 0.17
25 12 0.26
26 13 0.28
ACGTcount: A:0.68, C:0.01, G:0.11, T:0.20
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAAAT
Found at i:69385780 original size:27 final size:27
Alignment explanation
Indices: 69385761--69386079 Score: 467
Period size: 27 Copynumber: 11.8 Consensus size: 27
69385751 ATTAGCAAAG
* *
69385761 TACCCTCGATTTACAGAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
69385788 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
69385815 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
69385842 TACCCTCGATTTAAAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
69385869 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
69385896 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
**
69385923 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
69385950 TATCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
69385977 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * * * *
69386004 TACCCTTGACTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
69386031 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
69386058 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
69386080 TGAAATACCC
Statistics
Matches: 269, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 269 1.00
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:69386088 original size:27 final size:27
Alignment explanation
Indices: 69386031--69386332 Score: 243
Period size: 27 Copynumber: 11.2 Consensus size: 27
69386021 ATTATCGTTT
* * ****
69386031 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACCAAAA
* **
69386058 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * **
69386085 TACCCTTGATTTACAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
*
69386112 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * *
69386139 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* *
69386166 TACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
69386193 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
69386220 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* *
69386247 TACCCT-TAGTTTAAAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * *
69386274 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * **
69386301 TACCCTTGGTTTGCAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
69386328 TACCC
1 TACCC
69386333 CTAATTTGTG
Statistics
Matches: 237, Mismatches: 31, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.01
27 233 0.98
28 1 0.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:69386116 original size:54 final size:54
Alignment explanation
Indices: 69386031--69386332 Score: 304
Period size: 54 Copynumber: 5.6 Consensus size: 54
69386021 ATTATCGTTT
* * **** * **
69386031 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAA
** *
69386085 TACCCTTGATTTACAAAATTACTGAAATACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAATACCCTCGATTTA-TAAAATTACCAAAA
* * ** * * *
69386139 TACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAA
* * *
69386193 TACCCTTGGTTTACAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTACAAAATTACCAAAATACCCTCGA-TTTATAAAATTACCAAAA
* * * *
69386247 TACCCTT-AGTTTAAAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAA
* *
69386301 TACCCTTGGTTTGCAAAATTACCAAAATACCC
1 TACCCTTGATTTACAAAATTACCAAAATACCC
69386333 CTAATTTGTG
Statistics
Matches: 208, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.01
54 204 0.98
55 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACCAAAATACCCTCGATTTATAAAATTACCAAAA
Found at i:69386340 original size:27 final size:27
Alignment explanation
Indices: 69386072--69386362 Score: 330
Period size: 27 Copynumber: 10.8 Consensus size: 27
69386062 CTCGATTTAC
** * **
69386072 AAAATTACTGAAATACCCTTGATTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
** * * **
69386099 AAAATTACTGAAATACCCTCGATCAGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
69386126 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
69386153 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTTGGTTTGT
**
69386180 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTGT
* *
69386207 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* **
69386234 AAAATTACCAAAATACCCTTAGTTTAA
1 AAAATTACCAAAATACCCTTGGTTTGT
69386261 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
*
69386288 AAAATTACCAAAATACCCTTGGTTTGC
1 AAAATTACCAAAATACCCTTGGTTTGT
* **
69386315 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTGT
* **
69386342 GAAATTACTGAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
69386363 TAGGGTAGAA
Statistics
Matches: 227, Mismatches: 37, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 227 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTGT
Found at i:69386381 original size:27 final size:28
Alignment explanation
Indices: 69386316--69386399 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 28
69386306 TTGGTTTGCA
* **
69386316 AAATTACCAAAATACCCCTA-ATTTGT-G
1 AAATTACCGAAATACCCCTATA-GGGTAG
* * *
69386343 AAATTACTGAAATACCCTTGTAGGGTAG
1 AAATTACCGAAATACCCCTATAGGGTAG
69386371 AAA-TACCGAAATACCCCTATAGGGTAG
1 AAATTACCGAAATACCCCTATAGGGTAG
69386398 AA
1 AA
69386400 TTATCATTTT
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
27 41 0.89
28 5 0.11
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.25
Consensus pattern (28 bp):
AAATTACCGAAATACCCCTATAGGGTAG
Found at i:69386643 original size:25 final size:25
Alignment explanation
Indices: 69386609--69386678 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
69386599 AGGAAGTGCT
*
69386609 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
69386634 AAAAGGGCTTTGCCTCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
69386659 AAAAGGGATTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69386679 ATTAAAAGAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:69393960 original size:13 final size:13
Alignment explanation
Indices: 69393938--69393976 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
69393928 ATGCTAGAAT
*
69393938 ATTAAAAACAAGA
1 ATTAAGAACAAGA
*
69393951 ATTAAGAACACATA
1 ATTAAGAACA-AGA
69393965 ATTAAGAACAAG
1 ATTAAGAACAAG
69393977 TCAAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.62, C:0.10, G:0.10, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:69396392 original size:25 final size:25
Alignment explanation
Indices: 69396340--69396397 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
69396330 ATAAAACCTA
*
69396340 AAAATGAAATAGTATTAAATGAAAAT
1 AAAAT-AAAAAGTATTAAATGAAAAT
*
69396366 AAAATAAAAAGTACTTAAA-GAAGAT
1 AAAATAAAAAGTA-TTAAATGAAAAT
69396391 -AAATAAA
1 AAAATAAA
69396398 GAATAAAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 7 0.24
25 12 0.41
26 10 0.34
ACGTcount: A:0.66, C:0.02, G:0.10, T:0.22
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAATGAAAAT
Found at i:69403442 original size:40 final size:40
Alignment explanation
Indices: 69403351--69403534 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
69403341 GCTACTCGTT
*
69403351 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACT--CA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
69403389 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
69403429 CAAATGCCTTCGGGACTTAACCCGGA-TTAGGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTA-GTAACTCGCA
* * * * * *
69403469 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69403510 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69403535 CAACATTCGA
Statistics
Matches: 127, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
38 31 0.24
39 8 0.06
40 76 0.60
41 12 0.09
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69405025 original size:56 final size:56
Alignment explanation
Indices: 69404958--69405078 Score: 233
Period size: 56 Copynumber: 2.2 Consensus size: 56
69404948 TATTAGTTTA
69404958 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
69405014 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
69405070 TTGCCCATG
1 TTGCCCATG
69405079 ATCCCTTGTC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:69405764 original size:43 final size:42
Alignment explanation
Indices: 69405661--69405769 Score: 98
Period size: 43 Copynumber: 2.6 Consensus size: 42
69405651 TCGATGTCTC
* *
69405661 TGTCCCAGACAGGGTCTTACACGAAATCAGATACGATGCCGA
1 TGTCCCAGACACGGTCTTACACGAAATCAGATACGAGGCCGA
* * * *
69405703 TGTCCCAAACATGATCTTATACGTAAATCTCA-AT-CGAGGCCTG-
1 TGTCCCAGACACGGTCTTACACG-AAA--TCAGATACGAGGCC-GA
*
69405746 TGTCCCAGACACGGTCTTAAACGA
1 TGTCCCAGACACGGTCTTACACGA
69405770 TGTCTCAGAC
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
42 20 0.37
43 28 0.52
44 3 0.06
45 3 0.06
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATCAGATACGAGGCCGA
Found at i:69410463 original size:16 final size:16
Alignment explanation
Indices: 69410442--69410472 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
69410432 AGAATGGAGT
69410442 AAGTGAAATTATGTAC
1 AAGTGAAATTATGTAC
*
69410458 AAGTGAAATTTTGTA
1 AAGTGAAATTATGTA
69410473 ATAAAACAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35
Consensus pattern (16 bp):
AAGTGAAATTATGTAC
Found at i:69412304 original size:46 final size:47
Alignment explanation
Indices: 69412248--69412340 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 47
69412238 ATTAATGAGT
* *
69412248 GTCTAGCTATACATGCCACCAATCCGTGGTAGTGTGATGTCT-TCGA
1 GTCTACCTATACATGCCACCAATCCGTGATAGTGTGATGTCTCTCGA
69412294 GTCTACCTATACATGCCACCAATCCGTGATAGTGTGATGTCTCTCGA
1 GTCTACCTATACATGCCACCAATCCGTGATAGTGTGATGTCTCTCGA
69412341 CACGAATGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 40 0.91
47 4 0.09
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.30
Consensus pattern (47 bp):
GTCTACCTATACATGCCACCAATCCGTGATAGTGTGATGTCTCTCGA
Found at i:69415226 original size:49 final size:48
Alignment explanation
Indices: 69415149--69415282 Score: 128
Period size: 49 Copynumber: 2.8 Consensus size: 48
69415139 AGAAATTTCA
* * * *
69415149 GCACTATGTCTGCGAGGTTATGCGGCACTATGTGTGC-AAAAACTACATG
1 GCACTATGTGTGCGAGATTATACAGCACTATGTGTGCGAAAAA--ACATG
* ** *
69415198 GCACTATGTGTGCGAGATTATATAGCACTATGTGTGCGAGGAAACGTG
1 GCACTATGTGTGCGAGATTATACAGCACTATGTGTGCGAAAAAACATG
* *
69415246 GCACTATGTGTGCGA-ATGAGTAAGAGCACTATGTGTG
1 GCACTATGTGTGCGAGATTA-T-ACAGCACTATGTGTG
69415283 TGGACCTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
47 3 0.04
48 20 0.28
49 46 0.64
50 3 0.04
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (48 bp):
GCACTATGTGTGCGAGATTATACAGCACTATGTGTGCGAAAAAACATG
Found at i:69415230 original size:24 final size:24
Alignment explanation
Indices: 69415148--69415237 Score: 81
Period size: 24 Copynumber: 3.7 Consensus size: 24
69415138 AAGAAATTTC
* * **
69415148 AGCACTATGTCTGCGAGGTTATGC
1 AGCACTATGTGTGCGAGATTATAT
* * * * *
69415172 GGCACTATGTGTGCAAAAACTACAT
1 AGCACTATGTGTGC-GAGATTATAT
*
69415197 GGCACTATGTGTGCGAGATTATAT
1 AGCACTATGTGTGCGAGATTATAT
69415221 AGCACTATGTGTGCGAG
1 AGCACTATGTGTGCGAG
69415238 GAAACGTGGC
Statistics
Matches: 51, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
24 34 0.67
25 17 0.33
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (24 bp):
AGCACTATGTGTGCGAGATTATAT
Found at i:69415249 original size:24 final size:24
Alignment explanation
Indices: 69415193--69415260 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
69415183 TGCAAAAACT
*
69415193 ACATGGCACTATGTGTGCGAGATT
1 ACATGGCACTATGTGTGCGAGATA
* *
69415217 ATATAGCACTATGTGTGCGAGGA-A
1 ACATGGCACTATGTGTGCGA-GATA
*
69415241 ACGTGGCACTATGTGTGCGA
1 ACATGGCACTATGTGTGCGA
69415261 ATGAGTAAGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
24 35 0.95
25 2 0.05
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.26
Consensus pattern (24 bp):
ACATGGCACTATGTGTGCGAGATA
Found at i:69416414 original size:15 final size:16
Alignment explanation
Indices: 69416394--69416432 Score: 64
Period size: 15 Copynumber: 2.6 Consensus size: 16
69416384 TATGATATTG
69416394 TATCTTGGATTTC-CT
1 TATCTTGGATTTCTCT
69416409 TATCTTGGATTTCTCT
1 TATCTTGGATTTCTCT
69416425 T-TCTTGGA
1 TATCTTGGA
69416433 GATCTTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 20 0.87
16 3 0.13
ACGTcount: A:0.13, C:0.18, G:0.15, T:0.54
Consensus pattern (16 bp):
TATCTTGGATTTCTCT
Found at i:69419343 original size:16 final size:16
Alignment explanation
Indices: 69419322--69419353 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
69419312 AAAATGGAGT
69419322 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
69419338 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
69419354 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:69422647 original size:49 final size:50
Alignment explanation
Indices: 69422572--69422666 Score: 147
Period size: 49 Copynumber: 1.9 Consensus size: 50
69422562 CAGTATGCTT
*
69422572 TCACGAGTTGTAAATCCGTAAGCTCATACGAGTTGAGAATAGGTAAGCTC
1 TCACGAGTTGTAAATCCGTAAGCTCATACGAGCTGAGAATAGGTAAGCTC
* * *
69422622 TCACGAGTTG-CAATCGGTAAGCTCATACGAGCTGAGAATCGGTAA
1 TCACGAGTTGTAAATCCGTAAGCTCATACGAGCTGAGAATAGGTAA
69422667 TCCCTAAGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 31 0.76
50 10 0.24
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (50 bp):
TCACGAGTTGTAAATCCGTAAGCTCATACGAGCTGAGAATAGGTAAGCTC
Found at i:69422651 original size:24 final size:25
Alignment explanation
Indices: 69422574--69422666 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
69422564 GTATGCTTTC
*
69422574 ACGAGTTGTA-AATCCGTAAGCTCAT
1 ACGAGTTG-AGAATCGGTAAGCTCAT
*
69422599 ACGAGTTGAGAATAGGTAAGCTC-T
1 ACGAGTTGAGAATCGGTAAGCTCAT
*
69422623 CACGAGTTG-CAATCGGTAAGCTCAT
1 -ACGAGTTGAGAATCGGTAAGCTCAT
*
69422648 ACGAGCTGAGAATCGGTAA
1 ACGAGTTGAGAATCGGTAA
69422667 TCCCTAAGGA
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
24 21 0.36
25 37 0.64
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (25 bp):
ACGAGTTGAGAATCGGTAAGCTCAT
Found at i:69424926 original size:48 final size:48
Alignment explanation
Indices: 69424871--69424985 Score: 194
Period size: 48 Copynumber: 2.4 Consensus size: 48
69424861 TATCGGCAAT
69424871 TATGTGGTGGCTTGTCCATAATGAGCTATGTGACCGTTCATCGATATC
1 TATGTGGTGGCTTGTCCATAATGAGCTATGTGACCGTTCATCGATATC
* * * *
69424919 TATGTGGTGGCTTGTCCACAATGTGCTATGTGACTGTTCATCGGTATC
1 TATGTGGTGGCTTGTCCATAATGAGCTATGTGACCGTTCATCGATATC
69424967 TATGTGGTGGCTTGTCCAT
1 TATGTGGTGGCTTGTCCAT
69424986 GAATTGGTGT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 62 1.00
ACGTcount: A:0.17, C:0.18, G:0.27, T:0.37
Consensus pattern (48 bp):
TATGTGGTGGCTTGTCCATAATGAGCTATGTGACCGTTCATCGATATC
Found at i:69427153 original size:12 final size:12
Alignment explanation
Indices: 69427136--69427161 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
69427126 AGTGATTTAA
69427136 TTTGCTAGAAGC
1 TTTGCTAGAAGC
69427148 TTTGCTAGAAGC
1 TTTGCTAGAAGC
69427160 TT
1 TT
69427162 ACCAGAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (12 bp):
TTTGCTAGAAGC
Found at i:69435876 original size:15 final size:15
Alignment explanation
Indices: 69435839--69435867 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
69435829 TTTTCCTATC
69435839 TAATAATAATAATTA
1 TAATAATAATAATTA
69435854 TAATAATAATAATT
1 TAATAATAATAATT
69435868 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:69445869 original size:47 final size:47
Alignment explanation
Indices: 69445749--69446104 Score: 552
Period size: 49 Copynumber: 7.4 Consensus size: 47
69445739 TATCACAGTT
* * * * *
69445749 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATC--ACATAC
*
69445798 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
69445845 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
*
69445892 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTGTCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
*
69445941 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
69445990 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
69446037 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAC
69446086 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
69446105 GTAACAAAAT
Statistics
Matches: 291, Mismatches: 11, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
47 139 0.48
49 150 0.52
50 2 0.01
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
Found at i:69445944 original size:96 final size:95
Alignment explanation
Indices: 69445749--69446104 Score: 572
Period size: 96 Copynumber: 3.7 Consensus size: 95
69445739 TATCACAGTT
* * * * * *
69445749 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATATATATATACTTTCACATT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCACA-ATACATACACTTTCACATT
69445813 CATCACATTGGCCATTCGGCCTTATCACATAC
64 CATCACATTGGCCATTCGGCCTTATCACATAC
69445845 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC-ATACATACACTTTCACATTCA
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATACATACACTTTCACATTCA
*
69445909 TCACATTGGCCATTCGGCCTTGTCACATATAC
66 TCACATTGGCCATTCGGCCTTATCAC--ATAC
*
69445941 ATACACTTTCACATTCATCACATTGGCCATTTGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATACATACACTTTCACATTC
69446006 ATCACATTGGCCATTCGGCCTTATCACATAC
65 ATCACATTGGCCATTCGGCCTTATCACATAC
69446037 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACATACACTTTCACATTC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA-ATACATACACTTTCACATTC
69446102 ATC
65 ATC
69446105 GTAACAAAAT
Statistics
Matches: 245, Mismatches: 10, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
94 44 0.18
96 153 0.62
97 2 0.01
98 46 0.19
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (95 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACAATACATACACTTTCACATTCA
TCACATTGGCCATTCGGCCTTATCACATAC
Found at i:69445961 original size:27 final size:27
Alignment explanation
Indices: 69445931--69446012 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
69445921 TTCGGCCTTG
69445931 TCACATATACATACACTTTCACATTCA
1 TCACATATACATACACTTTCACATTCA
* ** *
69445958 TCACAT-TGGC---CA-TTTGGCCTT-A
1 TCACATAT-ACATACACTTTCACATTCA
69445980 TCACATATACATACACTTTCACATTCA
1 TCACATATACATACACTTTCACATTCA
69446007 TCACAT
1 TCACAT
69446013 TGGCCATTCG
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
22 8 0.20
23 7 0.17
24 2 0.05
25 2 0.05
26 7 0.17
27 14 0.35
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (27 bp):
TCACATATACATACACTTTCACATTCA
Found at i:69451323 original size:28 final size:28
Alignment explanation
Indices: 69451291--69451392 Score: 84
Period size: 28 Copynumber: 3.5 Consensus size: 28
69451281 TCAGAGTTAG
*
69451291 CTGGGCCTTAGCCCATATCAATAACAAT
1 CTGGGCCATAGCCCATATCAATAACAAT
*
69451319 CTGGGCCATAGCCCCT-TACAGTATCAA-AGTAT
1 CTGGGCCATAGCCCATAT-CA--AT-AACA--AT
* *
69451351 ACT-GGCCCTAGCCCATATCAATATCAAT
1 -CTGGGCCATAGCCCATATCAATAACAAT
69451379 CTGGGCCATAGCCC
1 CTGGGCCATAGCCC
69451393 TATTACAAGT
Statistics
Matches: 58, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
27 3 0.05
28 28 0.48
29 1 0.02
30 6 0.10
31 2 0.03
32 15 0.26
33 3 0.05
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (28 bp):
CTGGGCCATAGCCCATATCAATAACAAT
Found at i:69451425 original size:60 final size:59
Alignment explanation
Indices: 69451291--69451428 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 59
69451281 TCAGAGTTAG
*
69451291 CTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCCCTTACAGTATCAAAGTATA
1 CTGGGCCTT-GCCCATATCAATAACAATCTGGGCCATAGCCCATTACAG-ATCAAAGTATA
* * * *
69451352 CTGGCCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACA-AGTC-AAGATATG
1 CTGGGCCTTGCCCATATCAATAACAATCTGGGCCATAGCCC-ATTACAGA-TCAAAG-TATA
*
69451412 TTGGGCCTTGCCCATAT
1 CTGGGCCTTGCCCATAT
69451429 TAACACAGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
59 4 0.06
60 50 0.76
61 12 0.18
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (59 bp):
CTGGGCCTTGCCCATATCAATAACAATCTGGGCCATAGCCCATTACAGATCAAAGTATA
Found at i:69451446 original size:20 final size:20
Alignment explanation
Indices: 69451421--69451466 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
69451411 GTTGGGCCTT
69451421 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
69451441 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
69451460 GCCCATA
1 GCCCATA
69451467 ACAAACAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:69455433 original size:28 final size:27
Alignment explanation
Indices: 69455333--69455434 Score: 71
Period size: 28 Copynumber: 3.5 Consensus size: 27
69455323 TCAGAGTTAA
*
69455333 CTGGGCCTTAGCCCATATCAGTAACAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
* *
69455361 CTGGGCCATAGCCCCT-TAAAGTATCAAAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
* *
69455393 ATTAGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
69455421 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
69455435 TATTACAAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
27 6 0.11
28 27 0.48
30 2 0.04
32 15 0.27
33 6 0.11
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:69455461 original size:60 final size:59
Alignment explanation
Indices: 69455334--69455470 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
69455324 CAGAGTTAAC
*
69455334 TGGGCCTTAGCCCATATCAGTAACAATCTGGGCCATAGCCCCTTAAAGTATCAAAGTATAT
1 TGGGCC-TAGCCCATATCAGTAACAATCTGGGCCATAGCCCATTAAAG-ATCAAAGTATAT
* * * * *
69455395 TAGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAG-TC-GAGATATGT
1 TGGGCCTAGCCCATATCAGTAACAATCTGGGCCATAGCCC-ATTA-AAGATCAAAG-TATAT
*
69455455 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
69455471 TACCACAGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
59 2 0.03
60 52 0.80
61 8 0.12
62 3 0.05
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAGTAACAATCTGGGCCATAGCCCATTAAAGATCAAAGTATAT
Found at i:69456485 original size:25 final size:23
Alignment explanation
Indices: 69456430--69456485 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
69456420 TTTCGGCTAG
*
69456430 AGAAGAAAAGAAAGGAGAATAGA
1 AGAAGAAAAGAAAGGAGAAGAGA
* *
69456453 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGAAAGGAGAAGAGA
69456478 AGGAAGAA
1 A-GAAGAA
69456486 TTCGGCACTC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.08
24 4 0.15
25 19 0.73
26 1 0.04
ACGTcount: A:0.62, C:0.00, G:0.34, T:0.04
Consensus pattern (23 bp):
AGAAGAAAAGAAAGGAGAAGAGA
Found at i:69457794 original size:29 final size:29
Alignment explanation
Indices: 69457761--69457837 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
69457751 TGAATATGAC
* *
69457761 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
* *
69457790 TGGGCTTAATGGGCCATATATAGGTGATT
1 TGGGCCTAATGGGCCATATAAAGGTGATT
69457819 TGGGCCTAATGGGCCATAT
1 TGGGCCTAATGGGCCATAT
69457838 GAATATGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAAGGTGATT
Found at i:69460643 original size:93 final size:93
Alignment explanation
Indices: 69460538--69460709 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
69460528 GCCCATAAGA
*
69460538 AAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGAATCCATAAGTGACCTCGGACTCAACTCAA
1 AAACTCGGACTCAACTCAACGAGCTCGGACGTTCGAATCCATAAGTGACCTCGGACTCAACTCAA
69460603 CAAGCTCGGATGCCTAGTTACATCTCAC
66 CAAGCTCGGATGCCTAGTTACATCTCAC
* * *
69460631 AAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGATCTCGGACTCAACTCAA
1 AAACTCGGACTCAACTCAACGAGCTCGGACGTTCGAATCCATAAGTGACCTCGGACTCAACTCAA
* *
69460696 CGAGTTCGGATGCC
66 CAAGCTCGGATGCC
69460710 CAAATATCCG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
AAACTCGGACTCAACTCAACGAGCTCGGACGTTCGAATCCATAAGTGACCTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCAC
Found at i:69460705 original size:46 final size:45
Alignment explanation
Indices: 69460540--69460705 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 45
69460530 CCATAAGAAA
* *
69460540 ACTCGGACTCAACTCAACGAGCTCGGGCGTTCGAATCCATAAGTG
1 ACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTG
* * *
69460585 ACCTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACATCTCACAA---
1 A-CTCGGACTCAACTCAACGAGCTCGGA---C--GTTCGCATC-CATAAGTG
*
69460633 ACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTG
1 ACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTG
*
69460678 ATCTCGGACTCAACTCAACGAGTTCGGA
1 A-CTCGGACTCAACTCAACGAGCTCGGA
69460706 TGCCCAAATA
Statistics
Matches: 100, Mismatches: 9, Indels: 23
0.76 0.07 0.17
Matches are distributed among these distances:
42 7 0.07
43 4 0.04
44 1 0.01
45 2 0.02
46 50 0.50
47 24 0.24
48 1 0.01
49 1 0.01
50 3 0.03
51 7 0.07
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.21
Consensus pattern (45 bp):
ACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTG
Found at i:69463478 original size:30 final size:30
Alignment explanation
Indices: 69463435--69463503 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
69463425 TAAAGGTAAC
*
69463435 AAGAAAACC-GAATAAAGAAATCCA-AGATA
1 AAGAAACCCAGAATAAAGAAATCCAGA-ATA
*
69463464 GAGAAACCCAGAATAAAGAAATCCAGAATA
1 AAGAAACCCAGAATAAAGAAATCCAGAATA
69463494 AAGAAACCCA
1 AAGAAACCCA
69463504 AGATACGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATCCAGAATA
Found at i:69463483 original size:15 final size:15
Alignment explanation
Indices: 69463435--69463503 Score: 79
Period size: 15 Copynumber: 4.7 Consensus size: 15
69463425 TAAAGGTAAC
*
69463435 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
69463449 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
*
69463464 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
*
69463479 AAGAAATCCAGAATA
1 AAGAAACCCAGAATA
69463494 AAGAAACCCA
1 AAGAAACCCA
69463504 AGATACGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
14 9 0.20
15 36 0.78
16 1 0.02
ACGTcount: A:0.59, C:0.17, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:69466469 original size:46 final size:46
Alignment explanation
Indices: 69466402--69466668 Score: 253
Period size: 46 Copynumber: 5.8 Consensus size: 46
69466392 TGTAACCCGC
* * * *
69466402 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * *
69466448 CCATAATTGAACTCGGACTCAACTCAACGAGCTCTGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCAT
* *
69466498 -C-TCA-TGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
69466541 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--TTC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGC-A--T
* * * * *
69466587 ACATCTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACGTTTGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
69466634 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
69466669 AATGCCCAAA
Statistics
Matches: 182, Mismatches: 21, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 3 0.02
43 4 0.02
44 7 0.04
45 4 0.02
46 90 0.49
47 57 0.31
48 4 0.02
49 6 0.03
50 4 0.02
51 3 0.02
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:69466520 original size:47 final size:46
Alignment explanation
Indices: 69466455--69466622 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 46
69466445 CATCCATAAT
* *
69466455 TGAACTCGGACTCAACTCAACGAGCTCTGATGCCTAGTTACATCTCA
1 TGAACTCGAACTCAACTCAACGAGTTC-GATGCCTAGTTACATCTCA
* * *
69466502 TGAACTCGAACTCAACTCAACGAGTTCG--GAC--GTTCGCATCCATAA
1 TGAACTCGAACTCAACTCAACGAGTTCGATGCCTAGTT-ACAT-C-TCA
* *
69466547 GTGAACTCGGACTCAACTCAACGAGTTCGGATTCCTAGTTACATCTCA
1 -TGAACTCGAACTCAACTCAACGAGTTC-GATGCCTAGTTACATCTCA
*
69466595 CGAACTC-AGACTCAACTCAACGAGTTCG
1 TGAACTCGA-ACTCAACTCAACGAGTTCG
69466623 GACGTTTGCA
Statistics
Matches: 99, Mismatches: 12, Indels: 21
0.75 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 3 0.03
45 2 0.02
46 28 0.28
47 50 0.51
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (46 bp):
TGAACTCGAACTCAACTCAACGAGTTCGATGCCTAGTTACATCTCA
Found at i:69466521 original size:93 final size:93
Alignment explanation
Indices: 69466409--69466674 Score: 408
Period size: 93 Copynumber: 2.9 Consensus size: 93
69466399 CGCCCATAAG
* * * * *
69466409 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAATTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
69466474 ACGAGCTCTGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
69466502 TGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
69466567 ACGAGTTCGGATTCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
69466595 CGAACTC-AGACTCAACTCAACGAGTTCGGACGTTTGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGA-ACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
* *
69466659 AACGAGTTCGAATGCC
65 AACGAGCTCGGATGCC
69466675 CAAATATCCG
Statistics
Matches: 159, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
92 1 0.01
93 158 0.99
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:69472306 original size:40 final size:40
Alignment explanation
Indices: 69472214--69472480 Score: 366
Period size: 40 Copynumber: 6.8 Consensus size: 40
69472204 CATTTGAATG
* * *
69472214 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
69472253 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
69472293 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
69472333 ATA-CCGGGTTAAGACCCGAAGGCA-TT-TGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
69472370 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
69472410 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
69472450 ATACCCGGGTTAAGA-CCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
69472481 TTGTGGTTAT
Statistics
Matches: 203, Mismatches: 19, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
36 2 0.01
37 7 0.03
38 22 0.11
39 68 0.33
40 101 0.50
41 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:69472425 original size:117 final size:119
Alignment explanation
Indices: 69472218--69472500 Score: 450
Period size: 117 Copynumber: 2.4 Consensus size: 119
69472208 TGAATGATAT
* *
69472218 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-TTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCA-TTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
69472282 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATA-
65 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAC
69472336 CCGGGTTAAGACCCGAAGGCATT-TGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGT
1 CCGGGTTAAGACCCGAAGGCATTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGT
*
69472400 GCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 GCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAC
* * * *
69472454 CCGGGTTAAGA-CCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGC-ATTATGCTAGTGATTTTATCCGGGCTAA
69472501 ATTCCGAAGA
Statistics
Matches: 155, Mismatches: 6, Indels: 8
0.92 0.04 0.05
Matches are distributed among these distances:
116 9 0.06
117 93 0.60
118 39 0.25
119 14 0.09
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (119 bp):
CCGGGTTAAGACCCGAAGGCATTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGT
GCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCTATAC
Found at i:69480550 original size:40 final size:40
Alignment explanation
Indices: 69480460--69480728 Score: 393
Period size: 40 Copynumber: 6.8 Consensus size: 40
69480450 CATTTGAATG
* * *
69480460 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
69480499 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
69480539 ATATCCGGGCTAAGACCCGAAGGCATTTGT-CGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
69480578 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
69480617 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
69480657 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
69480697 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
69480729 TTGTGGTTAT
Statistics
Matches: 208, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
38 26 0.12
39 49 0.24
40 130 0.62
41 3 0.01
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:69480671 original size:118 final size:120
Alignment explanation
Indices: 69480464--69480748 Score: 479
Period size: 118 Copynumber: 2.4 Consensus size: 120
69480454 TGAATGATAT
* * * *
69480464 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGA-TATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
69480528 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGT-CGAGTTGCTATA-
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
*
69480581 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
69480646 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
66 TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
* *
69480701 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAA
69480749 ATTCCGAAGA
Statistics
Matches: 157, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
117 30 0.19
118 70 0.45
119 18 0.11
120 39 0.25
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (120 bp):
CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
Found at i:69482444 original size:16 final size:16
Alignment explanation
Indices: 69482398--69482451 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
69482388 ATGAATCGAC
* *
69482398 AAAAGCCGAAATGCAG
1 AAAAGCCAAAATGCCG
**
69482414 AATTGCCAAAATGCCG
1 AAAAGCCAAAATGCCG
*
69482430 AAAAGCCAAAATGCCA
1 AAAAGCCAAAATGCCG
69482446 AAAAGC
1 AAAAGC
69482452 TGAATGTTTG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.50, C:0.22, G:0.19, T:0.09
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:69482724 original size:29 final size:29
Alignment explanation
Indices: 69482692--69482756 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
69482682 GGCGTAACAT
* *
69482692 GCCATATAAATGTGATTTGGGCCTATTGG
1 GCCATATAAAGGTGATTTGGGCCTAATGG
*
69482721 GCCATATATAGGTGATTTGGGCCTAATGG
1 GCCATATAAAGGTGATTTGGGCCTAATGG
*
69482750 GTCATAT
1 GCCATAT
69482757 GAATATGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.34
Consensus pattern (29 bp):
GCCATATAAAGGTGATTTGGGCCTAATGG
Found at i:69485958 original size:38 final size:38
Alignment explanation
Indices: 69485913--69486068 Score: 224
Period size: 38 Copynumber: 4.1 Consensus size: 38
69485903 TAAAGGTCCA
69485913 CAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCG
1 CAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCG
*
69485951 CAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCG
1 CAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCG
* * *
69485989 CAAGCTTCATGCTGGTATTATAACAGGGTTAAATCCCG
1 CAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCG
* *
69486027 CAGGCTT-AGTGCTGGTATTATATTCGAGCTTAAAGTCCCG
1 CAGGCTTCA-TGCTGGTATTATATCCG-GGTTAAA-TCCCG
69486067 CA
1 CA
69486069 AGTTTTGTGC
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
37 1 0.01
38 91 0.87
39 6 0.06
40 7 0.07
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (38 bp):
CAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCG
Found at i:69485999 original size:76 final size:78
Alignment explanation
Indices: 69485893--69486070 Score: 254
Period size: 76 Copynumber: 2.3 Consensus size: 78
69485883 ATTTGATGTG
* * * * *
69485893 TATCCGGGCTTAAAGGT-CCACAGGCTTCATGCTGGTATTATATCCGGGTTAAATCCCGCAGGCT
1 TATCCGAGCTTAAA-GTCCCGCAAGCTTCATGCTGGTATTATAACAGGGTTAAATCCCGCAGGCT
*
69485957 TCGTGCTGGTATTA
65 TAGTGCTGGTATTA
*
69485971 TATCCG-GGTTAAA-TCCCGCAAGCTTCATGCTGGTATTATAACAGGGTTAAATCCCGCAGGCTT
1 TATCCGAGCTTAAAGTCCCGCAAGCTTCATGCTGGTATTATAACAGGGTTAAATCCCGCAGGCTT
69486034 AGTGCTGGTATTA
66 AGTGCTGGTATTA
*
69486047 TATTCGAGCTTAAAGTCCCGCAAG
1 TATCCGAGCTTAAAGTCCCGCAAG
69486071 TTTTGTGCTA
Statistics
Matches: 89, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
75 1 0.01
76 61 0.69
77 12 0.13
78 15 0.17
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (78 bp):
TATCCGAGCTTAAAGTCCCGCAAGCTTCATGCTGGTATTATAACAGGGTTAAATCCCGCAGGCTT
AGTGCTGGTATTA
Found at i:69487588 original size:93 final size:93
Alignment explanation
Indices: 69487475--69487646 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
69487465 CGCCCATAAG
* *
69487475 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69487540 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
69487568 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
69487633 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
69487647 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:69487643 original size:46 final size:46
Alignment explanation
Indices: 69487468--69487643 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
69487458 TGTAACCCGC
* * *
69487468 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
69487514 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
69487564 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
69487607 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
69487644 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:69494875 original size:93 final size:93
Alignment explanation
Indices: 69494761--69494930 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
69494751 CCCATAAGCA
* *
69494761 AACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
69494826 GAGTTCGGATGCCTAGTTACATCTCACG
66 GAGTTCGGATGCCTAGTTACATCTCACG
* * * *
69494854 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATATGTGAACTCGGACTCAACTCAAC
1 AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
69494919 GAGTTCGGATGC
66 GAGTTCGGATGC
69494931 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
AACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACG
Done.