Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 205 of 345
Found at i:69494927 original size:46 final size:45
Alignment explanation
Indices: 69494761--69494927 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 45
69494751 CCCATAAGCA
* * * * *
69494761 AACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCAT-AGTG
* * *
69494807 AACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-CG
1 AACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCAT-AGTG
69494854 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATATGTG
1 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATA-GTG
69494900 AACTCGGACTCAACTCAACGAGTTCGGA
1 AACTCGGACTCAACTCAACGAGTTCGGA
69494928 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 12, Indels: 16
0.78 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 1 0.01
46 54 0.53
47 29 0.29
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAGTG
Found at i:69504005 original size:29 final size:28
Alignment explanation
Indices: 69503935--69504018 Score: 98
Period size: 29 Copynumber: 2.9 Consensus size: 28
69503925 AAGGGTTTTA
69503935 GACACGGGC-GTGTCATGGCCGTGTGAGG
1 GACACGGGCTGTGTCA-GGCCGTGTGAGG
* *
69503963 GACACGGGTGTGTGTCAGGCTGTGTGAGG
1 GACACGGG-CTGTGTCAGGCCGTGTGAGG
* *
69503992 GACACGGGCATGTGCCAGGCCATGTGA
1 GACACGGGC-TGTGTCAGGCCGTGTGA
69504019 AAACCCATGT
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
28 8 0.17
29 33 0.70
30 6 0.13
ACGTcount: A:0.17, C:0.20, G:0.44, T:0.19
Consensus pattern (28 bp):
GACACGGGCTGTGTCAGGCCGTGTGAGG
Found at i:69508652 original size:22 final size:21
Alignment explanation
Indices: 69508626--69508688 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
69508616 ACTCATTAAG
69508626 TTGTGGTCTGAGTTCATGATT
1 TTGTGGTCTGAGTTCATGATT
* * ** *
69508647 TATGTGATTTGAACTCATGA-G
1 T-TGTGGTCTGAGTTCATGATT
69508668 TTGTGGTCTGAGTTCATGATT
1 TTGTGGTCTGAGTTCATGATT
69508689 ATGAAACACA
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
20 14 0.47
21 2 0.07
22 14 0.47
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (21 bp):
TTGTGGTCTGAGTTCATGATT
Found at i:69508681 original size:42 final size:43
Alignment explanation
Indices: 69508603--69508688 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 43
69508593 TCATTAGGAA
69508603 TTATGTGATCTAAACTCATTAAGTTGTGGTCTGAGTTCATGAT
1 TTATGTGATCTAAACTCATTAAGTTGTGGTCTGAGTTCATGAT
* * *
69508646 TTATGTGATTTGAACTCA-TGAGTTGTGGTCTGAGTTCATGAT
1 TTATGTGATCTAAACTCATTAAGTTGTGGTCTGAGTTCATGAT
69508688 T
1 T
69508689 ATGAAACACA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 24 0.60
43 16 0.40
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.43
Consensus pattern (43 bp):
TTATGTGATCTAAACTCATTAAGTTGTGGTCTGAGTTCATGAT
Found at i:69521467 original size:21 final size:20
Alignment explanation
Indices: 69521443--69521509 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
69521433 TTAGGAATTA
69521443 TGTGATCTGAACTCATTGAGT
1 TGTGATCTGAACTCA-TGAGT
* ** *
69521464 TGTGGTCTGAGTTCATGATTT
1 TGTGATCTGAACTCATGA-GT
*
69521485 ATGTGATTTGAACTCATGAGT
1 -TGTGATCTGAACTCATGAGT
69521506 TGTG
1 TGTG
69521510 GTTTAAGTTC
Statistics
Matches: 35, Mismatches: 9, Indels: 5
0.71 0.18 0.10
Matches are distributed among these distances:
20 7 0.20
21 14 0.40
22 14 0.40
ACGTcount: A:0.21, C:0.10, G:0.27, T:0.42
Consensus pattern (20 bp):
TGTGATCTGAACTCATGAGT
Found at i:69521519 original size:42 final size:43
Alignment explanation
Indices: 69521440--69521525 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 43
69521430 TCATTAGGAA
*
69521440 TTATGTGATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
1 TTATGTGATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGAT
* *
69521483 TTATGTGATTTGAACTCA-TGAGTTGTGGTTTAAGTTCATGAT
1 TTATGTGATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGAT
69521525 T
1 T
69521526 ATGAAACACA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 23 0.57
43 17 0.43
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.44
Consensus pattern (43 bp):
TTATGTGATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGAT
Found at i:69524074 original size:47 final size:47
Alignment explanation
Indices: 69524021--69524597 Score: 913
Period size: 47 Copynumber: 12.3 Consensus size: 47
69524011 ACAAGATATG
69524021 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
69524068 TATATGTGATAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
69524115 TATATGTGATAAGG-CGTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCG-AATGGCCAATGTGATGAATGTGAAAGTGTA
* *
69524162 CATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
69524209 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
** * *
69524256 TATATGTGATAAGGCCGGGTGGCCAACGTGATGAATGTGAAAGTGTG
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* *
69524303 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
**
69524350 TATATGTGATAAGGCCGGGTGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* **
69524397 TATATGTGATAAGGCCGAGTGGCCAACATGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
69524444 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
69524491 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
69524538 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
69524585 TAAATGTGATAAG
1 TATATGTGATAAG
69524598 TCTTGAAGGG
Statistics
Matches: 484, Mismatches: 44, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 2 0.00
47 480 0.99
48 2 0.00
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:69530468 original size:13 final size:13
Alignment explanation
Indices: 69530450--69530474 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69530440 TTAGTATGTG
69530450 TGAAAATTTAATA
1 TGAAAATTTAATA
69530463 TGAAAATTTAAT
1 TGAAAATTTAAT
69530475 CGTTTGTGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
TGAAAATTTAATA
Found at i:69531059 original size:21 final size:21
Alignment explanation
Indices: 69531033--69531082 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
69531023 GGGCTAAATT
69531033 GTGAAAATGAGAAATTGAGGG
1 GTGAAAATGAGAAATTGAGGG
69531054 GTG-AAATGAGAAATTGAGGG
1 GTGAAAATGAGAAATTGAGGG
* *
69531074 ATTAAAATG
1 GTGAAAATG
69531083 TAAAATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 18 0.69
21 8 0.31
ACGTcount: A:0.44, C:0.00, G:0.34, T:0.22
Consensus pattern (21 bp):
GTGAAAATGAGAAATTGAGGG
Found at i:69531293 original size:15 final size:18
Alignment explanation
Indices: 69531254--69531293 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 18
69531244 ATATGGATTG
69531254 ATTTGAATGAATGTGTAA
1 ATTTGAATGAATGTGTAA
69531272 A-TTGAAT-AA-GT-TAA
1 ATTTGAATGAATGTGTAA
69531286 ATTTGAAT
1 ATTTGAAT
69531294 TTATATAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 4 0.19
15 8 0.38
16 2 0.10
17 6 0.29
18 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.40
Consensus pattern (18 bp):
ATTTGAATGAATGTGTAA
Found at i:69531741 original size:43 final size:43
Alignment explanation
Indices: 69531571--69531742 Score: 138
Period size: 43 Copynumber: 4.0 Consensus size: 43
69531561 GATGTAAGAT
* * * * *
69531571 TCGATATGTAATTTCGTGTAAGACCACGTCTGGGATGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
* * ** * *
69531614 TCGACT-TATGATTTACGTGTAAGACCATGTCTA-GATATCGACA
1 TCGA-TATTTGA-TTACGTGTAAGACCACGTCTAGGACGTTGGCA
* *
69531657 TCG-TATTTGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATTTGATTACGTGTAAGACCAC-GTCTAGGAC-GTTGGCA
* *
69531699 TCGATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
69531742 T
1 T
69531743 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 20, Indels: 18
0.72 0.14 0.13
Matches are distributed among these distances:
41 18 0.18
42 13 0.13
43 49 0.49
44 20 0.20
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCACGTCTAGGACGTTGGCA
Found at i:69539360 original size:43 final size:42
Alignment explanation
Indices: 69539216--69539364 Score: 115
Period size: 43 Copynumber: 3.5 Consensus size: 42
69539206 GTAATTTCGT
* ** *
69539216 GTAAGACCACGTCTGGGAC-GTTGGCATCGGCTTATGATT-TAC
1 GTAAGACCACGTCTGGGACAG-TGACATCGTATT-TGATTAAAC
* * * **
69539258 GTCTAAGACCATGTCTAGGACATTGACATCGTATTTGATTTCAC
1 G--TAAGACCACGTCTGGGACAGTGACATCGTATTTGATTAAAC
* * *
69539302 GTAAGACC-CTTTCTGGGATAGTGACATCGATATTTGATTAAAT
1 GTAAGACCAC-GTCTGGGACAGTGACATCG-TATTTGATTAAAC
69539345 GTAAGACCACGTCTGGGACA
1 GTAAGACCACGTCTGGGACA
69539365 TTGGCATTGT
Statistics
Matches: 83, Mismatches: 17, Indels: 13
0.73 0.15 0.12
Matches are distributed among these distances:
42 23 0.28
43 31 0.37
44 29 0.35
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
GTAAGACCACGTCTGGGACAGTGACATCGTATTTGATTAAAC
Found at i:69542231 original size:15 final size:16
Alignment explanation
Indices: 69542211--69542240 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
69542201 ATAACAACTA
69542211 TATATAAT-TATATTT
1 TATATAATATATATTT
69542226 TATATAATATATATT
1 TATATAATATATATT
69542241 AATTGTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATAATATATATTT
Found at i:69544212 original size:52 final size:52
Alignment explanation
Indices: 69544134--69544240 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
69544124 GATCACATAA
* *
69544134 TCATAATAACCCCTAGTGACATGTCATTTGTATCGTAATCTATTCCTAAGGT
1 TCATAATAACCCCTAGTGACATGTCATTTGTATCCTAATCTATTCCTAACGT
69544186 TCATAATAACCCCTAGTGACATGTCATTTGTATCCTAATCTATTCCTAACGT
1 TCATAATAACCCCTAGTGACATGTCATTTGTATCCTAATCTATTCCTAACGT
69544238 TCA
1 TCA
69544241 ACTGGGATTT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.36
Consensus pattern (52 bp):
TCATAATAACCCCTAGTGACATGTCATTTGTATCCTAATCTATTCCTAACGT
Found at i:69548951 original size:29 final size:29
Alignment explanation
Indices: 69548906--69548975 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
69548896 GGCGATCAAT
* *
69548906 GAATACGAAAAGGGATAGCTTTGGCTATC
1 GAATATGAAAAGCGATAGCTTTGGCTATC
*
69548935 GAATATGAAAAGCGATAGCTTTGGCTATT
1 GAATATGAAAAGCGATAGCTTTGGCTATC
*
69548964 GATTATGAAAAG
1 GAATATGAAAAG
69548976 GGATGGTGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.37, C:0.10, G:0.26, T:0.27
Consensus pattern (29 bp):
GAATATGAAAAGCGATAGCTTTGGCTATC
Found at i:69549028 original size:29 final size:29
Alignment explanation
Indices: 69548967--69549037 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
69548957 GGCTATTGAT
* * * *
69548967 TATGAAAAGGGATGGTGACGACCATCAGC
1 TATGGAAAGGGGTGGTGACAACCATCAGA
69548996 TATGGAAAGGGGTGGTGACAACCATC-GAA
1 TATGGAAAGGGGTGGTGACAACCATCAG-A
69549025 TAT-GAAGAGGGGT
1 TATGGAA-AGGGGT
69549038 AGCTTTGGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 4 0.11
29 32 0.89
ACGTcount: A:0.34, C:0.13, G:0.35, T:0.18
Consensus pattern (29 bp):
TATGGAAAGGGGTGGTGACAACCATCAGA
Found at i:69568379 original size:43 final size:44
Alignment explanation
Indices: 69568267--69568380 Score: 119
Period size: 43 Copynumber: 2.7 Consensus size: 44
69568257 CAATACCAAC
* * *
69568267 ATCCTAGACGTGGTCTTACATGT-AATAAAATATCGATGCCACT
1 ATCCTAGACATGGTCTTACACGTAAATCAAATATCGATGCCACT
* * * *
69568310 ATCCCAAACAGGGTCTTACACG-AAATCAAATAT-GATGTCGA-T
1 ATCCTAGACATGGTCTTACACGTAAATCAAATATCGATG-CCACT
*
69568352 GTCCTAGACATGGTCTTACACGTAAATCA
1 ATCCTAGACATGGTCTTACACGTAAATCA
69568381 TAAGTCGATG
Statistics
Matches: 57, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 23 0.40
43 34 0.60
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (44 bp):
ATCCTAGACATGGTCTTACACGTAAATCAAATATCGATGCCACT
Found at i:69572360 original size:34 final size:34
Alignment explanation
Indices: 69572322--69572417 Score: 88
Period size: 34 Copynumber: 2.8 Consensus size: 34
69572312 GTCTAGGCTA
69572322 CTACTGTTACTGGAATAGGCTCAGGCCCAGACTG
1 CTACTGTTACTGGAATAGGCTCAGGCCCAGACTG
* * *
69572356 CTACTGCTACT-GAA-ACGAGCTCAGGACCAGATTG
1 CTACTGTTACTGGAATA-G-GCTCAGGCCCAGACTG
* * * * *
69572390 TTACCGTTATTGAAATAGGCTAAGGCCC
1 CTACTGTTACTGGAATAGGCTCAGGCCC
69572418 TAACTGTTAC
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
32 1 0.02
33 4 0.08
34 39 0.81
35 3 0.06
36 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (34 bp):
CTACTGTTACTGGAATAGGCTCAGGCCCAGACTG
Found at i:69573356 original size:18 final size:18
Alignment explanation
Indices: 69573310--69573357 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
69573300 TTATTAATAT
*
69573310 AAACATTTTAAATTAAAA
1 AAACATTTTAAACTAAAA
* ** *
69573328 AAATAAATTAAACTAGAA
1 AAACATTTTAAACTAAAA
69573346 AAACATTTTAAA
1 AAACATTTTAAA
69573358 TCTTAATTAG
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.29
Consensus pattern (18 bp):
AAACATTTTAAACTAAAA
Found at i:69584630 original size:29 final size:28
Alignment explanation
Indices: 69584598--69584788 Score: 129
Period size: 29 Copynumber: 6.6 Consensus size: 28
69584588 GGCTATCGAT
69584598 TATGAAAAGGGATGGTGACGAACATCAA
1 TATGAAAAGGGATGGTGACGAACATCAA
* *
69584626 CTATGAAAAGGGATGGTGATGATCATCGAA
1 -TATGAAAAGGGATGGTGACGAACATC-AA
* * * *
69584656 TATGAAGAGGGATAGCT-TCG-GCTATCGAA
1 TATGAAAAGGGAT-GGTGACGAAC-ATC-AA
* * * * *
69584685 TATGAAAAGGCATAGCT-TCG-ACTATTGAT
1 TATGAAAAGGGAT-GGTGACGAAC-A-TCAA
*
69584714 TATGAAAAGGGATGGTGACGACCATCAA
1 TATGAAAAGGGATGGTGACGAACATCAA
* *
69584742 CTATGAAATGGGATGGTGACGACCATCAA
1 -TATGAAAAGGGATGGTGACGAACATCAA
69584771 TTAATGAAAAGGGATGGT
1 -T-ATGAAAAGGGATGGT
69584789 TTTAACCATC
Statistics
Matches: 133, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
28 5 0.04
29 108 0.81
30 20 0.15
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (28 bp):
TATGAAAAGGGATGGTGACGAACATCAA
Found at i:69584660 original size:58 final size:57
Alignment explanation
Indices: 69584592--69584788 Score: 154
Period size: 58 Copynumber: 3.4 Consensus size: 57
69584582 AGCTTCGGCT
*
69584592 ATCGATTATGAAAAGGGATGGTGACGAACATCAACTATGAAAAGGGATGGTGATGATC
1 ATCGAATATGAAAAGGGATGGTGACGAACATCAACTATGAAAAGGGATGGTGATGA-C
* * * * * *
69584650 ATCGAATATGAAGAGGGATAGCT-TCG-GCTATCGAA-TATGAAAAGGCATAGCT--TCGAC
1 ATCGAATATGAAAAGGGAT-GGTGACGAAC-ATC-AACTATGAAAAGGGAT-GGTGAT-GAC
* * * * *
69584707 TATTGATTATGAAAAGGGATGGTGACGACCATCAACTATGAAATGGGATGGTGACGACC
1 -ATCGAATATGAAAAGGGATGGTGACGAACATCAACTATGAAAAGGGATGGTGATGA-C
69584766 ATC-AATTAATGAAAAGGGATGGT
1 ATCGAA-T-ATGAAAAGGGATGGT
69584789 TTTAACCATC
Statistics
Matches: 106, Mismatches: 19, Indels: 27
0.70 0.12 0.18
Matches are distributed among these distances:
57 10 0.09
58 73 0.69
59 23 0.22
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (57 bp):
ATCGAATATGAAAAGGGATGGTGACGAACATCAACTATGAAAAGGGATGGTGATGAC
Found at i:69584718 original size:87 final size:86
Alignment explanation
Indices: 69584558--69584755 Score: 229
Period size: 87 Copynumber: 2.3 Consensus size: 86
69584548 GGTATATAAG
* * * *
69584558 TGATCATTAAATATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGAACAT
1 TGATCA-TCAATATGAAAAGGGATAGCTTCGGCTATCGAATATGAAAAGGCATGCTGACGAACAT
69584623 CAACTATGAAAAGGGATGGTGA
65 CAACTATGAAAAGGGATGGTGA
* *
69584645 TGATCATCGAATATGAAGAGGGATAGCTTCGGCTATCGAATATGAAAAGGCATAGCT-TCG-ACT
1 TGATCATC-AATATGAAAAGGGATAGCTTCGGCTATCGAATATGAAAAGGCAT-GCTGACGAAC-
** *
69584708 ATTGATTATGAAAAGGGATGGTGA
63 ATCAACTATGAAAAGGGATGGTGA
* * *
69584732 CGACCATCAACTATGAAATGGGAT
1 TGATCATCAA-TATGAAAAGGGAT
69584756 GGTGACGACC
Statistics
Matches: 94, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
86 5 0.05
87 87 0.93
88 2 0.02
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (86 bp):
TGATCATCAATATGAAAAGGGATAGCTTCGGCTATCGAATATGAAAAGGCATGCTGACGAACATC
AACTATGAAAAGGGATGGTGA
Found at i:69584797 original size:59 final size:59
Alignment explanation
Indices: 69584715--69584827 Score: 138
Period size: 59 Copynumber: 1.9 Consensus size: 59
69584705 ACTATTGATT
* ** *
69584715 ATGAAAAGGGATGGTGACGACCATC-AACTATGAAATGGGATGGTGACGACCATCAATTA
1 ATGAAAAGGGATGGTGACAACCATCGAA-TATGAAAAAGGACGGTGACGACCATCAATTA
*** *
69584774 ATGAAAAGGGATGGTTTTAACCATCGAATATGAAAAAGGACGGTTACGACCATC
1 ATGAAAAGGGATGGTGACAACCATCGAATATGAAAAAGGACGGTGACGACCATC
69584828 GTTTAGCACA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
59 43 0.96
60 2 0.04
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (59 bp):
ATGAAAAGGGATGGTGACAACCATCGAATATGAAAAAGGACGGTGACGACCATCAATTA
Found at i:69587582 original size:16 final size:15
Alignment explanation
Indices: 69587561--69587590 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
69587551 GAATGGAGTA
69587561 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
69587577 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
69587591 TAAAACAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:69595163 original size:27 final size:26
Alignment explanation
Indices: 69595133--69595350 Score: 206
Period size: 27 Copynumber: 8.2 Consensus size: 26
69595123 ATTTCCCCTG
*
69595133 TGTGATTAAATGACTATTTTGCCATTA
1 TGTG-TTAAATGACTATTTTGCCCTTA
*
69595160 TGTGGTAAAGTGACTATTTTGCCCTTA
1 TGTGTTAAA-TGACTATTTTGCCCTTA
* *
69595187 TGTAGTAAAATGACTA-CTTGCCCTTA
1 TGT-GTTAAATGACTATTTTGCCCTTA
* *
69595213 TATGGTAGAATGACTATTTTGCCCTTA
1 TGTGTTA-AATGACTATTTTGCCCTTA
* * *
69595240 TGTGGTAGAATGATTGTTTTGCCCTTA
1 TGTGTTA-AATGACTATTTTGCCCTTA
* *
69595267 TGTGGTAAAATGATTATTTTGCCCTTA
1 TGT-GTTAAATGACTATTTTGCCCTTA
* *
69595294 TGTGGTAAAATGACTATTTTTCCCTTA
1 TGT-GTTAAATGACTATTTTGCCCTTA
* * *
69595321 TATGGTAAGATGACTATTTTG-GCTTA
1 TGTGTTAA-ATGACTATTTTGCCCTTA
69595347 TGTG
1 TGTG
69595351 ATGTATGTTT
Statistics
Matches: 162, Mismatches: 23, Indels: 13
0.82 0.12 0.07
Matches are distributed among these distances:
25 2 0.01
26 33 0.20
27 121 0.75
28 6 0.04
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (26 bp):
TGTGTTAAATGACTATTTTGCCCTTA
Found at i:69595198 original size:54 final size:54
Alignment explanation
Indices: 69595140--69595350 Score: 268
Period size: 54 Copynumber: 3.9 Consensus size: 54
69595130 CTGTGTGATT
* * *
69595140 AAATGACTATTTTGCCATTATGTGGTAAAGTGACTATTTTGCCCTTATGTAGTA
1 AAATGACTATTTTGCCCTTATATGGTAAAGTGACTATTTTGCCCTTATGTGGTA
*
69595194 AAATGACTA-CTTGCCCTTATATGGTAGAA-TGACTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA-AAGTGACTATTTTGCCCTTATGTGGTA
* * * * * *
69595247 GAATGATTGTTTTGCCCTTATGTGGTAAAATGATTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTAAAGTGACTATTTTGCCCTTATGTGGTA
* *
69595301 AAATGACTATTTTTCCCTTATATGGT-AAGATGACTATTTTG-GCTTATGTG
1 AAATGACTATTTTGCCCTTATATGGTAAAG-TGACTATTTTGCCCTTATGTG
69595351 ATGTATGTTT
Statistics
Matches: 135, Mismatches: 18, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
53 55 0.41
54 80 0.59
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (54 bp):
AAATGACTATTTTGCCCTTATATGGTAAAGTGACTATTTTGCCCTTATGTGGTA
Found at i:69595294 original size:107 final size:107
Alignment explanation
Indices: 69595149--69595350 Score: 309
Period size: 107 Copynumber: 1.9 Consensus size: 107
69595139 TAAATGACTA
*
69595149 TTTTGCCATTATGTGGTAAAGTGACTATTTTGCCCTTATGTAGTAAAATGACTA-CTTGCCCTTA
1 TTTTGCCATTATGTGGTAAAATGACTATTTTGCCCTTATGTAGTAAAATGACTATCTTGCCCTTA
69595213 TATGGT-AGAATGACTATTTTGCCCTTATGTGGTAGAATGATTG
66 TATGGTAAG-ATGACTATTTTG-CCTTATGTGGTAGAATGATTG
* * * * *
69595256 TTTTGCCCTTATGTGGTAAAATGATTATTTTGCCCTTATGTGGTAAAATGACTATTTTTCCCTTA
1 TTTTGCCATTATGTGGTAAAATGACTATTTTGCCCTTATGTAGTAAAATGACTATCTTGCCCTTA
*
69595321 TATGGTAAGATGACTATTTTGGCTTATGTG
66 TATGGTAAGATGACTATTTTGCCTTATGTG
69595351 ATGTATGTTT
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 58 0.67
108 26 0.30
109 2 0.02
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (107 bp):
TTTTGCCATTATGTGGTAAAATGACTATTTTGCCCTTATGTAGTAAAATGACTATCTTGCCCTTA
TATGGTAAGATGACTATTTTGCCTTATGTGGTAGAATGATTG
Found at i:69595367 original size:81 final size:81
Alignment explanation
Indices: 69595140--69595352 Score: 256
Period size: 80 Copynumber: 2.7 Consensus size: 81
69595130 CTGTGTGATT
* * *
69595140 AAATGACTATTTTGCCATTATGTGGTA-AAGTGACTATTTTGCCCTTATGT-AGTAAAATGACTA
1 AAATGACTATTTTGCCCTTATATGGTAGAA-TGACTATTTTGCCCTTATGTGA-TAAAATGATTA
*
69595203 -CTTGCCCTTATATGGTA
64 TTTTGCCCTTATATGGTA
* * * * *
69595220 GAATGACTATTTTGCCCTTATGTGGTAGAATGATTGTTTTGCCCTTATGTGGTAAAATGATTATT
1 AAATGACTATTTTGCCCTTATATGGTAGAATGACTATTTTGCCCTTATGTGATAAAATGATTATT
*
69595285 TTGCCCTTATGTGGTA
66 TTGCCCTTATATGGTA
* *
69595301 AAATGACTATTTTTCCCTTATATGGTA-AGATGACTATTTTG-GCTTATGTGAT
1 AAATGACTATTTTGCCCTTATATGGTAGA-ATGACTATTTTGCCCTTATGTGAT
69595353 GTATGTTTAC
Statistics
Matches: 114, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
80 63 0.55
81 51 0.45
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (81 bp):
AAATGACTATTTTGCCCTTATATGGTAGAATGACTATTTTGCCCTTATGTGATAAAATGATTATT
TTGCCCTTATATGGTA
Found at i:69595724 original size:18 final size:18
Alignment explanation
Indices: 69595677--69595725 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
69595667 CATGCATTCC
* * *
69595677 GTTTACTGTTTCTATATT
1 GTTTACTGTTACTACACT
**
69595695 GTTTACCATTACTACACT
1 GTTTACTGTTACTACACT
69595713 GTTTACTGTTACT
1 GTTTACTGTTACT
69595726 GCAATAGGCC
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.20, C:0.18, G:0.10, T:0.51
Consensus pattern (18 bp):
GTTTACTGTTACTACACT
Found at i:69597519 original size:6 final size:6
Alignment explanation
Indices: 69597489--69597563 Score: 82
Period size: 6 Copynumber: 12.3 Consensus size: 6
69597479 AAGAAACATT
* * *
69597489 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAGGTG
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
69597539 AT-AGA ATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT
69597564 TAGGTGAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
5 3 0.05
6 50 0.86
7 3 0.05
8 2 0.03
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:69597547 original size:25 final size:25
Alignment explanation
Indices: 69597516--69597613 Score: 99
Period size: 25 Copynumber: 3.7 Consensus size: 25
69597506 AATGAGAATC
69597516 AGAATCAGAATCAGAATCAGGTGAT
1 AGAATCAGAATCAGAATCAGGTGAT
*
69597541 AGAATCAGAATCAGAATCAGAATTAGGTGAA
1 AGAATCAGAATCAGAATC------AGGTGAT
* *
69597572 AAAATCAGAATCA-ATATCAGGTAAT
1 AGAATCAGAATCAGA-ATCAGGTGAT
69597597 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
69597614 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
25 37 0.62
26 1 0.02
30 1 0.02
31 21 0.35
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.20
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAT
Found at i:69597548 original size:31 final size:31
Alignment explanation
Indices: 69597510--69597613 Score: 132
Period size: 31 Copynumber: 3.5 Consensus size: 31
69597500 AATCAAAATG
69597510 AGAATCAGAATCAGAATCAGAATCAGGTGAT
1 AGAATCAGAATCAGAATCAGAATCAGGTGAT
*
69597541 AGAATCAGAATCAGAATCAGAATTAGGTG--
1 AGAATCAGAATCAGAATCAGAATCAGGTGAT
*
69597570 A-AA--A-AATCAGAATCA-ATATCAGGTAAT
1 AGAATCAGAATCAGAATCAGA-ATCAGGTGAT
69597597 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
69597614 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 3, Indels: 14
0.79 0.04 0.17
Matches are distributed among these distances:
24 1 0.02
25 17 0.27
26 1 0.02
27 1 0.02
28 4 0.06
29 1 0.02
30 1 0.02
31 37 0.59
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTGAT
Found at i:69597798 original size:25 final size:26
Alignment explanation
Indices: 69597729--69597799 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 26
69597719 AAAGCTGCTA
*
69597729 ATAACAGAATATTGTGGCAGAGCCACC
1 ATAACAGAATA-TGTGGCAAAGCCACC
* *
69597756 AGAATCAG-ATAATATGGCAAAGCCA-C
1 ATAA-CAGAAT-ATGTGGCAAAGCCACC
*
69597782 TTAACAGAATATGTGGCA
1 ATAACAGAATATGTGGCA
69597800 CAAAGCCATC
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
25 10 0.29
26 5 0.14
27 16 0.46
28 4 0.11
ACGTcount: A:0.41, C:0.18, G:0.21, T:0.20
Consensus pattern (26 bp):
ATAACAGAATATGTGGCAAAGCCACC
Found at i:69597877 original size:20 final size:20
Alignment explanation
Indices: 69597822--69597878 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
69597812 TAACGGGTCT
69597822 ATAATCGGCACGAAGCCCACA
1 ATAA-CGGCACGAAGCCCACA
* **
69597843 ATATCGATACGAAGCCCACA
1 ATAACGGCACGAAGCCCACA
*
69597863 ATAACGGCACAAAGCC
1 ATAACGGCACGAAGCC
69597879 TTCGATAACA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 26 0.90
21 3 0.10
ACGTcount: A:0.40, C:0.32, G:0.18, T:0.11
Consensus pattern (20 bp):
ATAACGGCACGAAGCCCACA
Found at i:69599493 original size:79 final size:82
Alignment explanation
Indices: 69599382--69599566 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
69599372 GCTACTCATT
* * *
69599382 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CATAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCATAACCC
* *
69599445 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
69599462 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCATAACCCG
* *
69599525 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
69599542 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69599567 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCATAACCCG
GATATAGTAACTTAGCA
Found at i:69599566 original size:40 final size:40
Alignment explanation
Indices: 69599382--69599566 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
69599372 GCTACTCATT
* *
69599382 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
69599422 CAATTGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
69599462 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
69599501 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
69599542 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69599567 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:69607400 original size:38 final size:40
Alignment explanation
Indices: 69607284--69607470 Score: 195
Period size: 40 Copynumber: 4.7 Consensus size: 40
69607274 GCTACTCGTT
*
69607284 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
69607324 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
69607364 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
69607402 CAAATGCCGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAAT---GCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
69607446 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
69607471 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
38 27 0.22
39 2 0.02
40 60 0.48
41 13 0.10
43 14 0.11
44 8 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69611887 original size:1 final size:1
Alignment explanation
Indices: 69611881--69612910 Score: 1169
Period size: 1 Copynumber: 1030.0 Consensus size: 1
69611871 TCTTTCTTTC
* *
69611881 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*** * *
69611946 TTTTTTTTTTTTTCCATTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * *
69612011 GTGTTTTTTTTTTTTTTTTTTGTTATTTTTTTTTTATTGTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *** * * **
69612076 TTTTTTTTTTTTTTGTTTTTTTTTTTCTTTTTTTTTTTTTTGCGTTTTTTTATTTTCTTTTTTCC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * ** * ** ** * ** *
69612141 TTCATTTTTTTTTATTTATTTTTTTTTTTTTTTTTCCTTTTTCTCATCATCTTTAGTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** ***** * *** * *** * * * ** * * ***
69612206 TCTTTTTCCTTTCCACCTTCTTTTTTTCCCTCTCCCTTCTTTTCTCTTTTTTCCTTATTCTCCAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * **
69612271 CTTTTTTTATTTTTTTTTTTTTTTTTTTTTCTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTGAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
69612336 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
69612401 GTTTCTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * *
69612466 TTTTTTTTTTTTTCTTTTTTTGTTTTTTTGTTTTTTATTTTTTATTTTTTTTTTTTGTTTATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
69612531 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** **
69612596 TTTTTTTTTTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * ** ** *
69612661 TTTTTATTTTTTTTTTTTTTCTTTTTTTTTTTTTGGTGGTTTTTTCTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
69612726 TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
69612791 TTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
69612856 TTTTTTTTTATTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
69612911 CTTGTCATCA
Statistics
Matches: 874, Mismatches: 155, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 874 1.00
ACGTcount: A:0.03, C:0.05, G:0.02, T:0.90
Consensus pattern (1 bp):
T
Found at i:69622370 original size:40 final size:39
Alignment explanation
Indices: 69622286--69622509 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 39
69622276 TTGAATGATG
* * * *
69622286 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
69622326 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
69622366 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
69622405 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
69622445 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
69622485 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
69622510 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 68 0.42
40 86 0.53
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:69622422 original size:79 final size:79
Alignment explanation
Indices: 69622286--69622509 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 79
69622276 TTGAATGATG
* * * * *
69622286 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
69622349 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
* *
69622366 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
*
69622431 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* * *
69622445 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
69622509 G
65 G
69622510 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 107 0.84
80 19 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:69627028 original size:11 final size:11
Alignment explanation
Indices: 69627014--69627040 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
69627004 GATTAAAAAC
69627014 AAATGATTTGA
1 AAATGATTTGA
69627025 AAATGATTTGA
1 AAATGATTTGA
69627036 AAATG
1 AAATG
69627041 TGAAATTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (11 bp):
AAATGATTTGA
Found at i:69629167 original size:43 final size:43
Alignment explanation
Indices: 69629119--69629227 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
69629109 ATAGCTACGA
* *
69629119 CTAATTAATTGGCACTAAGTGTGGGATACAATTATAGCCTCGG
1 CTAATTAATTGGCACTAAGTGTGCGATACAATTATAGCCTCAG
* * *
69629162 CTAATTAATTGGCACTAAGTGAGCGATACAATTATAGCTTTAG
1 CTAATTAATTGGCACTAAGTGTGCGATACAATTATAGCCTCAG
***
69629205 CTAATTAATCAACACTAAGTGTG
1 CTAATTAATTGGCACTAAGTGTG
69629228 TGAATTCATT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (43 bp):
CTAATTAATTGGCACTAAGTGTGCGATACAATTATAGCCTCAG
Found at i:69631614 original size:11 final size:11
Alignment explanation
Indices: 69631600--69631626 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
69631590 GATTAAAAAC
69631600 AAATGATTTGA
1 AAATGATTTGA
69631611 AAATGATTTGA
1 AAATGATTTGA
69631622 AAATG
1 AAATG
69631627 TGAAATTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (11 bp):
AAATGATTTGA
Found at i:69635502 original size:44 final size:42
Alignment explanation
Indices: 69635452--69635571 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 42
69635442 AATTTGAGGT
69635452 ACTAAGTGTGCAATA-AATGAAATAG-CTACGGCTAATTAATTGG
1 ACTAAGTGTGCAATACAAT--AATAGCCT-CGGCTAATTAATTGG
** *
69635495 CACTAAGTGTGTGATACAATTATAGCCTCGGCTAATTAATTGG
1 -ACTAAGTGTGCAATACAATAATAGCCTCGGCTAATTAATTGG
** *
69635538 ACCTAAGTGTGTGATACAATTATAGCCTCGGCTA
1 A-CTAAGTGTGCAATACAATAATAGCCTCGGCTA
69635572 TGTGTGCGAT
Statistics
Matches: 70, Mismatches: 3, Indels: 7
0.88 0.04 0.09
Matches are distributed among these distances:
42 1 0.01
43 51 0.73
44 15 0.21
45 3 0.04
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (42 bp):
ACTAAGTGTGCAATACAATAATAGCCTCGGCTAATTAATTGG
Found at i:69635527 original size:43 final size:43
Alignment explanation
Indices: 69635480--69635571 Score: 168
Period size: 43 Copynumber: 2.1 Consensus size: 43
69635470 GAAATAGCTA
69635480 CGGCTAATTAATTGG-CACTAAGTGTGTGATACAATTATAGCCT
1 CGGCTAATTAATTGGAC-CTAAGTGTGTGATACAATTATAGCCT
69635523 CGGCTAATTAATTGGACCTAAGTGTGTGATACAATTATAGCCT
1 CGGCTAATTAATTGGACCTAAGTGTGTGATACAATTATAGCCT
69635566 CGGCTA
1 CGGCTA
69635572 TGTGTGCGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 47 0.98
44 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (43 bp):
CGGCTAATTAATTGGACCTAAGTGTGTGATACAATTATAGCCT
Found at i:69635600 original size:72 final size:72
Alignment explanation
Indices: 69635501--69635635 Score: 227
Period size: 72 Copynumber: 1.9 Consensus size: 72
69635491 TTGGCACTAA
*
69635501 GTGTGTGATACAATTATAGCCTCGGCTAATTAATTGG-ACCTAAGTGTGTGATACAATTATAGCC
1 GTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCA-CTAAGTGTGTGATACAATTATAGCC
69635565 TCGGCTAT
65 TCGGCTAT
* *
69635573 GTGTGCGATACAATTATAGCTTTGGCTAATTAATTGGCACTAAGTGTGTGATACAATTATAGC
1 GTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTGTGTGATACAATTATAGC
69635636 TTCAGCTAAT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
72 58 0.98
73 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (72 bp):
GTGTGCGATACAATTATAGCCTCGGCTAATTAATTGGCACTAAGTGTGTGATACAATTATAGCCT
CGGCTAT
Found at i:69635627 original size:43 final size:43
Alignment explanation
Indices: 69635573--69635666 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
69635563 CCTCGGCTAT
** *
69635573 GTGTGCGATACAATTATAGCTTTGGCTAATTAATTGGCACTAA
1 GTGTGCGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
*
69635616 GTGTGTGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
1 GTGTGCGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
69635659 GTGTGCGA
1 GTGTGCGA
69635667 GTTCGTTGAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (43 bp):
GTGTGCGATACAATTATAGCTTCAGCTAATTAATCGGCACTAA
Found at i:69636870 original size:28 final size:28
Alignment explanation
Indices: 69636829--69636907 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
69636819 GCAATCAAAT
* *
69636829 ATGATACTCAGTGTACGAAATATTGAGA
1 ATGACACTTAGTGTACGAAATATTGAGA
* *
69636857 ATGGCACTTAGTGTACGAGATATTGAGA
1 ATGACACTTAGTGTACGAAATATTGAGA
* *
69636885 ATGACACTTAGTGTGCAAAATAT
1 ATGACACTTAGTGTACGAAATAT
69636908 CGAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (28 bp):
ATGACACTTAGTGTACGAAATATTGAGA
Found at i:69639260 original size:24 final size:24
Alignment explanation
Indices: 69639225--69639300 Score: 125
Period size: 24 Copynumber: 3.2 Consensus size: 24
69639215 AGTCTATCAA
*
69639225 GAGAGGATTTAGGAGTTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
69639249 GATAGGATTTAGGAGCTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
69639273 GAGAGGATTTAGGAGCTGATTAGG
1 GAGAGGATTTAGGAGCTGATAAGG
69639297 GAGA
1 GAGA
69639301 ATAATGTTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.33, C:0.03, G:0.41, T:0.24
Consensus pattern (24 bp):
GAGAGGATTTAGGAGCTGATAAGG
Found at i:69640732 original size:27 final size:27
Alignment explanation
Indices: 69640692--69640749 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
69640682 AGGAAGCGTC
*
69640692 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* * *
69640719 CTGGTGGCTCTGCCACAATTATTTGTT
1 CTGGTGGCTATGCCACAATTATCTGAT
69640746 CTGG
1 CTGG
69640750 CAGCAATGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:69651639 original size:6 final size:6
Alignment explanation
Indices: 69651628--69651705 Score: 68
Period size: 6 Copynumber: 12.7 Consensus size: 6
69651618 AAGAAAATTG
* * * *
69651628 AAAAAT AAAAAT CAAAAG AAAAAT AAGAAT AAAATAA ATAAAAT AAAAA-
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT A-AAAAT AAAAAT
* *
69651677 AATAAG AATAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AA-AAAT AAAAAT AAAAAT AAAA
69651706 TAGGAGGATT
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
5 4 0.07
6 42 0.74
7 8 0.14
8 3 0.05
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:69651642 original size:28 final size:29
Alignment explanation
Indices: 69651611--69651705 Score: 101
Period size: 28 Copynumber: 3.4 Consensus size: 29
69651601 GATATGTCTT
*
69651611 TCAAAATAAGAAAAT-TGAA-AAATAAAAA
1 TCAAAATAA-AAAATAAGAATAAATAAAAA
* *
69651639 TCAAAA-GAAAAATAAGAATAAA-ATAAA
1 TCAAAATAAAAAATAAGAATAAATAAAAA
69651666 T-AAAATAAAAAAATAAGAATAAATAAAAA
1 TCAAAAT-AAAAAATAAGAATAAATAAAAA
*
69651695 TAAAAATAAAA
1 TCAAAATAAAA
69651706 TAGGAGGATT
Statistics
Matches: 56, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
26 9 0.16
27 9 0.16
28 24 0.43
29 9 0.16
30 5 0.09
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (29 bp):
TCAAAATAAAAAATAAGAATAAATAAAAA
Found at i:69651676 original size:38 final size:39
Alignment explanation
Indices: 69651629--69651704 Score: 104
Period size: 38 Copynumber: 2.0 Consensus size: 39
69651619 AGAAAATTGA
*
69651629 AAAATAAAAATCAA-AAGAA-AAATAAGAAT-AAAATAAAT
1 AAAATAAAAA--AATAAGAATAAATAAAAATAAAAATAAAT
69651667 AAAATAAAAAAATAAGAATAAATAAAAATAAAAATAAA
1 AAAATAAAAAAATAAGAATAAATAAAAATAAAAATAAA
69651705 ATAGGAGGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
36 2 0.06
37 5 0.15
38 19 0.56
39 8 0.24
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.16
Consensus pattern (39 bp):
AAAATAAAAAAATAAGAATAAATAAAAATAAAAATAAAT
Found at i:69656582 original size:31 final size:31
Alignment explanation
Indices: 69656544--69656602 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
69656534 AGGTCTAACA
69656544 ATACTTGATTCAGTTCCTGTTAAAGAGGACT
1 ATACTTGATTCAGTTCCTGTTAAAGAGGACT
69656575 ATACTTGATTCAGTTCCTGTTAAAGAGG
1 ATACTTGATTCAGTTCCTGTTAAAGAGG
69656603 GTTTAGCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (31 bp):
ATACTTGATTCAGTTCCTGTTAAAGAGGACT
Found at i:69662816 original size:46 final size:48
Alignment explanation
Indices: 69662667--69662915 Score: 211
Period size: 45 Copynumber: 5.3 Consensus size: 48
69662657 ATCAGATATA
*
69662667 CATGTCTGGGACATGCATCGGCCAT--ATTATG-AGAGCTAGTGTAAGAC
1 CATGTCTGGGACATGCATCGGCC-TCGA-GATGTAGAGCTAGTGTAAGAC
** * *
69662714 CATGTCTGGGACATGGCATCGGTATTGAGGTG-AGAGCTAGTGTAAGA-
1 CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAGAGCTAGTGTAAGAC
*
69662761 CATG-CTGGGACATGCATCGGCCTCGAGATGTA-AGCAAGTGTAAGA-
1 CATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCTAGTGTAAGAC
* * *
69662806 CATGTTTGGGACATGCATC-GACTACGAGATGT-G-TC-AGTGTAAGAC
1 CATGTCTGGGACATGCATCGGCCT-CGAGATGTAGAGCTAGTGTAAGAC
* * *
69662851 CATTTCTGGGACATGACATCAG-CAC-AGATAAGTGAGAGCTAGTGTAAGAC
1 CATGTCTGGGACATG-CATCGGCCTCGAGAT--GT-AGAGCTAGTGTAAGAC
*
69662901 CATGTTTGGGACATG
1 CATGTCTGGGACATG
69662916 GCATTGGGCT
Statistics
Matches: 168, Mismatches: 18, Indels: 29
0.78 0.08 0.13
Matches are distributed among these distances:
44 13 0.08
45 47 0.28
46 38 0.23
47 20 0.12
48 25 0.15
49 2 0.01
50 23 0.14
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.24
Consensus pattern (48 bp):
CATGTCTGGGACATGCATCGGCCTCGAGATGTAGAGCTAGTGTAAGAC
Found at i:69664193 original size:21 final size:20
Alignment explanation
Indices: 69664169--69664208 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
69664159 GTTATAATGA
* *
69664169 CCACACGGGCGTGTTGCCCTT
1 CCACACAGGCATG-TGCCCTT
69664190 CCACACAGGCATGTGCCCT
1 CCACACAGGCATGTGCCCT
69664209 ATTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (20 bp):
CCACACAGGCATGTGCCCTT
Found at i:69666528 original size:18 final size:18
Alignment explanation
Indices: 69666501--69666544 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
69666491 TGGTGGTTTT
*
69666501 TAATTAAGGCTAATGTTG
1 TAATTTAGGCTAATGTTG
69666519 TAATTTAGGCTAATGTTG
1 TAATTTAGGCTAATGTTG
69666537 TAATTTAG
1 TAATTTAG
69666545 TAATAAAGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (18 bp):
TAATTTAGGCTAATGTTG
Found at i:69669985 original size:42 final size:43
Alignment explanation
Indices: 69669926--69670016 Score: 130
Period size: 42 Copynumber: 2.1 Consensus size: 43
69669916 TAGGGTTAGT
*
69669926 TGAGATTAAGTGTAAGACCATATCTGAGATA-TGGCATCGATA
1 TGAGATTAAGTGTAAGACCATAGCTGAGATATTGGCATCGATA
** * *
69669968 TGAGATTTTGTGTAAGACCATAGCTGGGCTATTGGCATCGATA
1 TGAGATTAAGTGTAAGACCATAGCTGAGATATTGGCATCGATA
69670011 TGAGAT
1 TGAGAT
69670017 CCCATGTAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 26 0.60
43 17 0.40
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (43 bp):
TGAGATTAAGTGTAAGACCATAGCTGAGATATTGGCATCGATA
Found at i:69670025 original size:43 final size:42
Alignment explanation
Indices: 69669936--69670047 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 42
69669926 TGAGATTAAG
* ****
69669936 TGTAAGACCATATCTGAGATATGGCATCGATATGAGATTTTG
1 TGTAAGACCATAGCTGAGATATGGCATCGATATGAGATCCCA
* *
69669978 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATAGCTGAGATA-TGGCATCGATATGAGATCCCA
* ** *
69670021 TGTAAGATCATATATGGGATATGGCAT
1 TGTAAGACCATAGCTGAGATATGGCAT
69670048 TCGTATGGTA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATAGCTGAGATATGGCATCGATATGAGATCCCA
Found at i:69670341 original size:15 final size:16
Alignment explanation
Indices: 69670321--69670350 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
69670311 CACAAAAACA
69670321 TTTATGTT-AATTTAC
1 TTTATGTTAAATTTAC
69670336 TTTATGTTAAATTTA
1 TTTATGTTAAATTTA
69670351 TGTTAAAGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.30, C:0.03, G:0.07, T:0.60
Consensus pattern (16 bp):
TTTATGTTAAATTTAC
Found at i:69676674 original size:7 final size:7
Alignment explanation
Indices: 69676658--69676691 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
69676648 ATCCTTGCTT
69676658 TTTTCTC
1 TTTTCTC
*
69676665 TTTCCTC
1 TTTTCTC
69676672 TTTTCTC
1 TTTTCTC
69676679 TTTTCTC
1 TTTTCTC
69676686 TTTTCT
1 TTTTCT
69676692 TATTTATAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTTCTC
Found at i:69687216 original size:103 final size:103
Alignment explanation
Indices: 69687037--69687246 Score: 298
Period size: 103 Copynumber: 2.0 Consensus size: 103
69687027 AGTGGATAAG
* * *
69687037 TTGTAGAATTATCGAAATACCCTTGTAAGGTAGAATTATCGAAATACCCTTGTAGAGTAGAATTA
1 TTGTAGAATTACCGAAATACCCTTGTAAGGTAGAATTATCGAAATACCCTTGCAGAGTAGAAATA
** * *
69687102 TTGAAATACCCCTGTAAGTTAGAATTATCGAAATACCC
66 CCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCC
*
69687140 TTGTAGAATTACCGAAATACCAC-TGT-AGGATAGAATTATCGAAATACCCTTGCAGGGTAGAAA
1 TTGTAGAATTACCGAAATACC-CTTGTAAGG-TAGAATTATCGAAATACCCTTGCAGAGTAGAAA
* *
69687203 TACCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCC
64 TACCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCC
69687243 TTGT
1 TTGT
69687247 GGGGTAAAAT
Statistics
Matches: 95, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
102 3 0.03
103 91 0.96
104 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (103 bp):
TTGTAGAATTACCGAAATACCCTTGTAAGGTAGAATTATCGAAATACCCTTGCAGAGTAGAAATA
CCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCC
Found at i:69687251 original size:27 final size:27
Alignment explanation
Indices: 69687039--69687258 Score: 245
Period size: 27 Copynumber: 8.3 Consensus size: 27
69687029 TGGATAAGTT
*
69687039 GTAGAATTATCGAAATACCCTTGTAAG
1 GTAGAATTATCGAAATACCCTTGTAGG
*
69687066 GTAGAATTATCGAAATACCCTTGTAGA
1 GTAGAATTATCGAAATACCCTTGTAGG
* * *
69687093 GTAGAATTATTGAAATACCCCTGTAAG
1 GTAGAATTATCGAAATACCCTTGTAGG
*
69687120 TTAGAATTATCGAAATACCC-T-T---
1 GTAGAATTATCGAAATACCCTTGTAGG
*
69687142 GTAGAATTACCGAAATACCAC-TGTAGG
1 GTAGAATTATCGAAATACC-CTTGTAGG
* *
69687169 ATAGAATTATCGAAATACCCTTGCAGG
1 GTAGAATTATCGAAATACCCTTGTAGG
* * *
69687196 GTAGAAATACCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCTTGTAGG
* * *
69687223 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTATCGAAATACCCTTGTAGG
*
69687250 GTAAAATTA
1 GTAGAATTA
69687259 CCATTTTGCC
Statistics
Matches: 164, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
22 17 0.10
23 2 0.01
24 1 0.01
25 1 0.01
26 2 0.01
27 141 0.86
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCTTGTAGG
Found at i:69703688 original size:27 final size:27
Alignment explanation
Indices: 69703443--69703680 Score: 368
Period size: 27 Copynumber: 8.8 Consensus size: 27
69703433 GGGTGTTACA
69703443 ATTCCGGTAATTCTACCCTACAGGGGT
1 ATTCCGGTAATTCTACCCTACAGGGGT
* *
69703470 ATTTCGGTAATTTTACCCTACAGGGGT
1 ATTCCGGTAATTCTACCCTACAGGGGT
* *
69703497 ATTGCAGTAATTCTACCCTACAGGGGT
1 ATTCCGGTAATTCTACCCTACAGGGGT
* *
69703524 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTCCGGTAATTCTACCCTACAGGGGT
*
69703551 ATTTCGGTAATTCTACCCTACAGGGGT
1 ATTCCGGTAATTCTACCCTACAGGGGT
* *
69703578 ATTGCGATAATTCTACCCTACAGGGGT
1 ATTCCGGTAATTCTACCCTACAGGGGT
* *
69703605 ATTCCGATAATTCTACCCTACAGAGGT
1 ATTCCGGTAATTCTACCCTACAGGGGT
*
69703632 ATTCCGGTAATTCTACCCTACAAGGGT
1 ATTCCGGTAATTCTACCCTACAGGGGT
69703659 ATTCCGGTAATTCTACCCTACA
1 ATTCCGGTAATTCTACCCTACA
69703681 AGGATATTGC
Statistics
Matches: 197, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 197 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (27 bp):
ATTCCGGTAATTCTACCCTACAGGGGT
Found at i:69703723 original size:27 final size:27
Alignment explanation
Indices: 69703701--69703765 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
69703691 GATAATTTTG
*
69703701 TAAATCGAGGGTGAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
69703728 TAAATTGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
69703755 CAAATCGAGGG
1 TAAATCGAGGG
69703766 CATTTCAGTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.26
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:69705834 original size:12 final size:12
Alignment explanation
Indices: 69705817--69705855 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
69705807 ATCTTCATTA
69705817 TTTCTTATTTAT
1 TTTCTTATTTAT
69705829 TTTCTTATTTAT
1 TTTCTTATTTAT
69705841 TTTCTT-TTTAAT
1 TTTCTTATTT-AT
69705853 TTT
1 TTT
69705856 TGATTTTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 3 0.12
12 23 0.88
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTCTTATTTAT
Found at i:69706546 original size:19 final size:19
Alignment explanation
Indices: 69706522--69706558 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
69706512 AGACCTCAAT
69706522 TATGATACTTTAGTAGAAA
1 TATGATACTTTAGTAGAAA
69706541 TATGATACTTTAGTAGAA
1 TATGATACTTTAGTAGAA
69706559 TAACTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.38
Consensus pattern (19 bp):
TATGATACTTTAGTAGAAA
Found at i:69711808 original size:49 final size:49
Alignment explanation
Indices: 69711751--69711849 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
69711741 TATACATCAC
*
69711751 AAGTATCAGTCATAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
1 AAGTATCAGTCACAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
69711800 AAGTATCAGTCACAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
1 AAGTATCAGTCACAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
69711849 A
1 A
69711850 GAACTTACTC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.29
Consensus pattern (49 bp):
AAGTATCAGTCACAGATTATAAGATTGTCCTGAAATCACCCTCATAGAT
Found at i:69712200 original size:48 final size:47
Alignment explanation
Indices: 69712147--69712317 Score: 184
Period size: 48 Copynumber: 3.6 Consensus size: 47
69712137 AATACTGATT
* * * *
69712147 CCATGTCTCAGACATGGTCTTACAGTGGCTCTCATAAAGTGGTCGATG
1 CCATGTC-CAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATG
* * * *
69712195 TCATGTCCAGACATGGTCTTACACTAGCACACATATCAA--CGCCAATG
1 CCATGTCCAGACATGGTCTTACACTAGCTCTCATA--AAGTGGCCAATG
*
69712242 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATA
1 CCATGT-CCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATG
* *
69712290 CAATGTCCTAGACATGGTCTTGCACTAG
1 CCATGTCC-AGACATGGTCTTACACTAG
69712318 TCTTACACTA
Statistics
Matches: 102, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
46 2 0.02
47 36 0.35
48 62 0.61
49 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (47 bp):
CCATGTCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATG
Found at i:69712326 original size:11 final size:11
Alignment explanation
Indices: 69712306--69712337 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
69712296 CCTAGACATG
*
69712306 GTCTTGCACTA
1 GTCTTACACTA
69712317 GTCTTACACTA
1 GTCTTACACTA
69712328 GTCTTACACT
1 GTCTTACACT
69712338 GGCTCTCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (11 bp):
GTCTTACACTA
Found at i:69712413 original size:48 final size:48
Alignment explanation
Indices: 69712357--69712541 Score: 230
Period size: 48 Copynumber: 3.9 Consensus size: 48
69712347 AAAGTGGCAT
* *
69712357 ATGCCATGTCCCAGACACGGTCTTCCACTAGCACACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
* * * * *
69712405 ATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATA--AAGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAA--CGCCG
* * *
69712453 ATGCTATGTCCCAGACATGGTCTTACACTAGCACACATATCAACACCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
**
69712501 ATGCCATGTCTTAGACATGGTCTTACACTAGCACACATATC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATC
69712542 GCCCAATTGT
Statistics
Matches: 115, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
46 2 0.02
48 111 0.97
50 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCG
Found at i:69712436 original size:166 final size:165
Alignment explanation
Indices: 69712163--69712483 Score: 500
Period size: 166 Copynumber: 1.9 Consensus size: 165
69712153 CTCAGACATG
* * *
69712163 GTCTTACAGTGGCTCTCATAAAGTGGTCGATGTCATGTCCAGACATGGTCTTACACTAGCACACA
1 GTCTTACACTGGCTCTCATAAAGTGGTCGATGCCATGTCCAGACACGGTCTTACACTAGCACACA
69712228 TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATACAA
66 TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATACAA
* *
69712293 TGTCCTAGACATGGTCTTGCACTAGTCTTACACTA
131 TGTCCCAGACATGGTCTTACACTAGTCTTACACTA
* *
69712328 GTCTTACACTGGCTCTCATAAAGTGG-CATATGCCATGTCCCAGACACGGTCTTCCACTAGCACA
1 GTCTTACACTGGCTCTCATAAAGTGGTC-GATGCCATGT-CCAGACACGGTCTTACACTAGCACA
* * ** *
69712392 CATATCAACGCCGATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCATAAAGTGGCTGATGC
64 CATATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATAC
*
69712457 TATGTCCCAGACATGGTCTTACACTAG
129 AATGTCCCAGACATGGTCTTACACTAG
69712484 CACACATATC
Statistics
Matches: 141, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
164 1 0.01
165 33 0.23
166 107 0.76
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (165 bp):
GTCTTACACTGGCTCTCATAAAGTGGTCGATGCCATGTCCAGACACGGTCTTACACTAGCACACA
TATCAACGCCAATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAAGTGGCCAATACAA
TGTCCCAGACATGGTCTTACACTAGTCTTACACTA
Found at i:69712495 original size:96 final size:96
Alignment explanation
Indices: 69712328--69712532 Score: 313
Period size: 96 Copynumber: 2.1 Consensus size: 96
69712318 TCTTACACTA
* *
69712328 GTCTTACACTGGCTCTCATAAAGTGGCATATGCCATGTCCCAGACACGGTCTTCCACTAGCACAC
1 GTCTTACACTAGCTCTCATAAAGTGGCATATGCCATGTCCCAGACACGGTCTTACACTAGCACAC
* *
69712393 ATATCAACGCCGATGCCATGTCCCAGACATG
66 ATATCAACACCAATGCCATGTCCCAGACATG
* * *
69712424 GTTTTACACTAGCTCTCATAAAGTGGC-TGATGCTATGTCCCAGACATGGTCTTACACTAGCACA
1 GTCTTACACTAGCTCTCATAAAGTGGCAT-ATGCCATGTCCCAGACACGGTCTTACACTAGCACA
**
69712488 CATATCAACACCAATGCCATGTCTTAGACATG
65 CATATCAACACCAATGCCATGTCCCAGACATG
69712520 GTCTTACACTAGC
1 GTCTTACACTAGC
69712533 ACACATATCG
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
95 1 0.01
96 97 0.99
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (96 bp):
GTCTTACACTAGCTCTCATAAAGTGGCATATGCCATGTCCCAGACACGGTCTTACACTAGCACAC
ATATCAACACCAATGCCATGTCCCAGACATG
Found at i:69712587 original size:50 final size:50
Alignment explanation
Indices: 69712465--69712611 Score: 221
Period size: 50 Copynumber: 3.0 Consensus size: 50
69712455 GCTATGTCCC
* * *
69712465 AGACATGGTCTTACACTAGCACACATATCAACACCAA-TGCCATGTC-T--T
1 AGACATGGTCTTACACTAGCACACATATC-GC-CCAATTGTCATGGCATGGT
69712513 AGACATGGTCTTACACTAGCACACATATCGCCCAATTGTCATGGCATGGT
1 AGACATGGTCTTACACTAGCACACATATCGCCCAATTGTCATGGCATGGT
69712563 AGACATGGTCTTACACTAGCACACATATCGCCCAATTGTCATGGCATGG
1 AGACATGGTCTTACACTAGCACACATATCGCCCAATTGTCATGGCATGG
69712612 ATAGCCAATC
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
46 4 0.04
47 8 0.09
48 30 0.33
50 50 0.54
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (50 bp):
AGACATGGTCTTACACTAGCACACATATCGCCCAATTGTCATGGCATGGT
Found at i:69722628 original size:21 final size:21
Alignment explanation
Indices: 69722603--69722655 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
69722593 CAGTGGAGAT
69722603 AGGAAAAACAGGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
*
69722624 AGGAAAAACAAGTTCCAAAAC
1 AGGAAAAACAGGTTCCAAAAC
*
69722645 AGGAATAACAG
1 AGGAAAAACAG
69722656 TGGCTGTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.55, C:0.17, G:0.19, T:0.09
Consensus pattern (21 bp):
AGGAAAAACAGGTTCCAAAAC
Found at i:69737262 original size:11 final size:11
Alignment explanation
Indices: 69737246--69737277 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
69737236 TCACTGGGAG
69737246 GAATGAATTTA
1 GAATGAATTTA
69737257 GAATGAATTTA
1 GAATGAATTTA
69737268 GAATGAATTT
1 GAATGAATTT
69737278 TTTATATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.19, T:0.38
Consensus pattern (11 bp):
GAATGAATTTA
Found at i:69742350 original size:18 final size:19
Alignment explanation
Indices: 69742329--69742379 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
69742319 AAAAACTGAT
69742329 TTTCCAACAAAAAT-ACTA
1 TTTCCAACAAAAATGACTA
*
69742347 TTTCC-ATAAAAATGACTA
1 TTTCCAACAAAAATGACTA
*
69742365 TTTTCAACTAAAAAT
1 TTTCCAAC-AAAAAT
69742380 TACTTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 7 0.26
18 13 0.48
19 1 0.04
20 6 0.22
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (19 bp):
TTTCCAACAAAAATGACTA
Found at i:69742924 original size:15 final size:15
Alignment explanation
Indices: 69742904--69742938 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
69742894 TTATATATTA
**
69742904 AAACTATAGGCTGTG
1 AAACTATAAACTGTG
69742919 AAACTATAAACTGTG
1 AAACTATAAACTGTG
69742934 AAACT
1 AAACT
69742939 GTAGATAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (15 bp):
AAACTATAAACTGTG
Found at i:69749391 original size:33 final size:33
Alignment explanation
Indices: 69749349--69749420 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
69749339 TTTTCTTTCT
69749349 TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
1 TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
69749382 TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
1 TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
*
69749415 TCTCTC
1 TTTCTC
69749421 AGCACACTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.08, C:0.32, G:0.14, T:0.46
Consensus pattern (33 bp):
TTTCTCTTTCCTCTTTTATAGGGTAGGTCCCCC
Found at i:69749431 original size:33 final size:33
Alignment explanation
Indices: 69749361--69749431 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
69749351 TCTCTTTCCT
* ** *
69749361 CTTTTATAGGGTAGGTCCCCCTTTCTCTTTCCT
1 CTTTTATAGGGTAGGTCCCCCTCTCTCTAGCCA
69749394 CTTTTATAGGGTAGGTCCCCCTCTCTC-AGCACA
1 CTTTTATAGGGTAGGTCCCCCTCTCTCTAGC-CA
69749427 CTTTT
1 CTTTT
69749432 CTCCCTCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
32 1 0.03
33 32 0.97
ACGTcount: A:0.13, C:0.31, G:0.15, T:0.41
Consensus pattern (33 bp):
CTTTTATAGGGTAGGTCCCCCTCTCTCTAGCCA
Found at i:69749711 original size:28 final size:28
Alignment explanation
Indices: 69749671--69749727 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
69749661 AGTGTAATGA
*
69749671 TAAAATTTGATTTAATTATTTATACTAT
1 TAAAATTTGATTTAATGATTTATACTAT
69749699 TAAAATTTGATTTAATGATTTATACTAT
1 TAAAATTTGATTTAATGATTTATACTAT
69749727 T
1 T
69749728 TGAACGAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.04, G:0.05, T:0.53
Consensus pattern (28 bp):
TAAAATTTGATTTAATGATTTATACTAT
Found at i:69751145 original size:20 final size:20
Alignment explanation
Indices: 69751117--69751167 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
69751107 TTGTACGGGA
* *
69751117 TTTGCACTTGGGTGCCTCTG
1 TTTGCACTTCGATGCCTCTG
*
69751137 TTTGTACTTCGATGCCTCTG
1 TTTGCACTTCGATGCCTCTG
* *
69751157 TATACACTTCG
1 TTTGCACTTCG
69751168 GTGCTCCTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.12, C:0.25, G:0.22, T:0.41
Consensus pattern (20 bp):
TTTGCACTTCGATGCCTCTG
Found at i:69752189 original size:24 final size:24
Alignment explanation
Indices: 69752162--69752215 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
69752152 TAAAACAAAC
69752162 CATTACTAGCCATTCTAATGGCTA
1 CATTACTAGCCATTCTAATGGCTA
69752186 CATTACTAGCCATTCTAATGGCTA
1 CATTACTAGCCATTCTAATGGCTA
*
69752210 GATTAC
1 CATTAC
69752216 AAGCATCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (24 bp):
CATTACTAGCCATTCTAATGGCTA
Found at i:69754786 original size:24 final size:24
Alignment explanation
Indices: 69754754--69754803 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
69754744 TCGGTTAAAG
69754754 ATAGATGTTTATACACATATATGT
1 ATAGATGTTTATACACATATATGT
69754778 ATAGATGTTTATACACATATATGT
1 ATAGATGTTTATACACATATATGT
69754802 AT
1 AT
69754804 GAGTTTGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (24 bp):
ATAGATGTTTATACACATATATGT
Found at i:69755945 original size:12 final size:12
Alignment explanation
Indices: 69755928--69755964 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
69755918 AGAGAGTTAT
69755928 ACGGGTGAGGAC
1 ACGGGTGAGGAC
69755940 ACGGGTGAGGAC
1 ACGGGTGAGGAC
*
69755952 ACGGGTTAGGAC
1 ACGGGTGAGGAC
69755964 A
1 A
69755965 AAGCCGTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.27, C:0.16, G:0.46, T:0.11
Consensus pattern (12 bp):
ACGGGTGAGGAC
Found at i:69759484 original size:32 final size:32
Alignment explanation
Indices: 69759442--69759542 Score: 96
Period size: 32 Copynumber: 3.2 Consensus size: 32
69759432 ATGTGGCTCT
*
69759442 AAGCCTTCAGTAGCGGTATTATAATTGGCACA
1 AAGCCATCAGTAGCGGTATTATAATTGGCACA
* * **
69759474 AAGCCATCAGTAACTGTATTATGTTTGGCACA
1 AAGCCATCAGTAGCGGTATTATAATTGGCACA
* * * *
69759506 TAGCCATCAG-CGACGGTAATATAATCGGCACA
1 AAGCCATCAGTAG-CGGTATTATAATTGGCACA
*
69759538 CAGCC
1 AAGCC
69759543 TTGGGTAAAT
Statistics
Matches: 54, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
32 54 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (32 bp):
AAGCCATCAGTAGCGGTATTATAATTGGCACA
Found at i:69759659 original size:22 final size:22
Alignment explanation
Indices: 69759611--69759675 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
69759601 GTAAATACGT
*
69759611 TTGGCACAAAGCCATAGTCAGG
1 TTGGCACAGAGCCATAGTCAGG
* ** *
69759633 ATGGCACAGAGCCATTTTTAGG
1 TTGGCACAGAGCCATAGTCAGG
* *
69759655 TTGGCATAGAGCCATAATCAG
1 TTGGCACAGAGCCATAGTCAG
69759676 ATTACGCGGC
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (22 bp):
TTGGCACAGAGCCATAGTCAGG
Found at i:69760094 original size:27 final size:27
Alignment explanation
Indices: 69760054--69760105 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
69760044 ACAGTCATTT
*
69760054 TACCCTACAAGGGTATTTCGGTAATCC
1 TACCCTACAAGGGTATCTCGGTAATCC
*
69760081 TACCCTACAGGGGTATCTCGGTAAT
1 TACCCTACAAGGGTATCTCGGTAAT
69760106 TTTGCAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (27 bp):
TACCCTACAAGGGTATCTCGGTAATCC
Found at i:69760120 original size:27 final size:26
Alignment explanation
Indices: 69760090--69760349 Score: 191
Period size: 27 Copynumber: 9.7 Consensus size: 26
69760080 CTACCCTACA
* *
69760090 GGGGTATCTCGGTAATTTTGCAAACTG
1 GGGGTATTTCGGTAATTTTACAAA-TG
* *
69760117 GGGGTATTTCAGTAATTTCACAAATCG
1 GGGGTATTTCGGTAATTTTACAAAT-G
* *
69760144 GGAGTATTTTGGTAATTTTACAAATTG
1 GGGGTATTTCGGTAATTTTACAAA-TG
* *
69760171 GGGGTATTTTGATAA-TTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAAT-G
* *
69760197 GGGGGATTTCAGTAATTTTACAAATTG
1 GGGGTATTTCGGTAATTTTACAAA-TG
* **
69760224 GAGGTATTTTTGTAATTTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAAT-G
* * *
69760251 TGGGTATTTCGATAGTTTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAAT-G
* * *
69760278 AGGGTA-TTCTAGTAATTTCACAAATTG
1 GGGGTATTTC-GGTAATTTTACAAA-TG
** * *
69760305 GGGGTATTTTTGTAATTTTAAAAATTA
1 GGGGTATTTCGGTAATTTTACAAA-TG
* *
69760332 GAGGTATTTCGGTGATTT
1 GGGGTATTTCGGTAATTT
69760350 AGAAATTGGA
Statistics
Matches: 185, Mismatches: 39, Indels: 18
0.76 0.16 0.07
Matches are distributed among these distances:
25 1 0.01
26 25 0.14
27 154 0.83
28 5 0.03
ACGTcount: A:0.28, C:0.08, G:0.23, T:0.40
Consensus pattern (26 bp):
GGGGTATTTCGGTAATTTTACAAATG
Found at i:69760158 original size:54 final size:54
Alignment explanation
Indices: 69760090--69760341 Score: 258
Period size: 54 Copynumber: 4.7 Consensus size: 54
69760080 CTACCCTACA
* * *
69760090 GGGGTATCTCGGTAATTTTGCAAACTGGGGGTATTTCAGTAATTTCACAAATCG
1 GGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAATCG
* * *
69760144 GGAGTATTTTGGTAATTTTACAAATTGGGGGTATTT-TGATAATTT-ACAAATCG
1 GGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAG-TAATTTCACAAATCG
* * * ** *
69760197 GGGGGATTTCAGTAATTTTACAAATTGGAGGTATTTTTGTAATTTTACAAATCG
1 GGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAATCG
* * * * * *
69760251 TGGGTATTTCGATAGTTTTACAAATCGAGGGTA-TTCTAGTAATTTCACAAATTG
1 GGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTC-AGTAATTTCACAAATCG
** * * *
69760305 GGGGTATTTTTGTAATTTTAAAAATTAGAGGTATTTC
1 GGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTC
69760342 GGTGATTTAG
Statistics
Matches: 160, Mismatches: 33, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
53 48 0.30
54 109 0.68
55 3 0.02
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (54 bp):
GGGGTATTTCGGTAATTTTACAAATTGGGGGTATTTCAGTAATTTCACAAATCG
Found at i:69760201 original size:81 final size:80
Alignment explanation
Indices: 69760116--69760355 Score: 288
Period size: 80 Copynumber: 3.0 Consensus size: 80
69760106 TTTGCAAACT
* *
69760116 GGGGGTATTTCAGTAATTTCACAAATCGGGAGTATTTTGGTAATTTTACAAATTGGGGGTATTTT
1 GGGGGTATTTCAGTAATTTCACAAAT-GGGAGTATTTTTGTAATTTTACAAATTGGGGGTATTTC
69760181 GATA-ATTTACAAATC
65 GATAGATTTACAAATC
* * * * *
69760196 GGGGGGATTTCAGTAATTTTACAAATTGGAGGTATTTTTGTAATTTTACAAATCGTGGGTATTTC
1 GGGGGTATTTCAGTAATTTCACAAATGGGA-GTATTTTTGTAATTTTACAAATTGGGGGTATTTC
*
69760261 GATAGTTTTACAAATC
65 GATAGATTTACAAATC
* * * * *
69760277 GAGGGTA-TTCTAGTAATTTCACAAATTGGGGGTATTTTTGTAATTTTAAAAATTAGAGGTATTT
1 GGGGGTATTTC-AGTAATTTCACAAA-TGGGAGTATTTTTGTAATTTTACAAATTGGGGGTATTT
* *
69760341 CGGT-GATTTAGAAAT
64 CGATAGATTTACAAAT
69760356 TGGACGTCTT
Statistics
Matches: 135, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
79 3 0.02
80 70 0.52
81 59 0.44
82 3 0.02
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (80 bp):
GGGGGTATTTCAGTAATTTCACAAATGGGAGTATTTTTGTAATTTTACAAATTGGGGGTATTTCG
ATAGATTTACAAATC
Found at i:69763920 original size:238 final size:238
Alignment explanation
Indices: 69763502--69763972 Score: 834
Period size: 238 Copynumber: 2.0 Consensus size: 238
69763492 GCTTATAGAG
* *
69763502 CAAAAAATAATAGACTCAAGGAAGGGGAAGAGAAATCTGCCTTGGGTTTTGCATCAAATTTCAGT
1 CAAAAAATAACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTGCATCAAATTTCAGT
* * *
69763567 ATTAAAATGAAAGTTGGAGTAGTGAAAGCTTTCTGCAATTCTGCCTTTATTTTCTGATTTGAACT
66 ATTAAAATAAAAGTTGAAGTAGTGAAAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTGAACT
*
69763632 TTGTGATTTGTAAACTTAAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGTCCAATCCA
131 TTGTGATTTGTAAACTTAAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGCCCAATCCA
69763697 TGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAACAGAA
196 TGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAACAGAA
*
69763740 CAAAAAATCACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTGCATCAAATTTCAGT
1 CAAAAAATAACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTGCATCAAATTTCAGT
* *
69763805 ATTAAAATAAAAGTTGAAGTTGTGAGAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTGAACT
66 ATTAAAATAAAAGTTGAAGTAGTGAAAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTGAACT
* *
69763870 TTGTGATTTGTAAACTTGAATGATGATGTTGAATGGTTTTATTTTGGATTTGAATGCCCAATCCA
131 TTGTGATTTGTAAACTTAAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGCCCAATCCA
*
69763935 TGAGCTAAATCTCATTAGGTTGGAATTATTTGGGTGAA
196 TGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAA
69763973 TTTTTACTAT
Statistics
Matches: 221, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
238 221 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (238 bp):
CAAAAAATAACAGACTCAAGGAAGGGGAAGAGAAATCTACCTTGGGTTTTGCATCAAATTTCAGT
ATTAAAATAAAAGTTGAAGTAGTGAAAGCTTTCTACAATTCTGCCTTTATTTTCTGATTTGAACT
TTGTGATTTGTAAACTTAAATGATGATGTTGAATGATTTTATTTTGGATTTGAATGCCCAATCCA
TGAACTAAATCTCATTAGGTTGGAATTATTTGGGTGAACAGAA
Found at i:69770089 original size:41 final size:41
Alignment explanation
Indices: 69769967--69770060 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
69769957 TGACTTGGGT
* *
69769967 CACACGACCAGTCACACACCCATGTGCCAACCCGTGTGCCA
1 CACACGACCAGTCACACGCCCATGTGCCAGCCCGTGTGCCA
69770008 CACACGACCAGTCACACGCCCATGTGCCAGCCCGTGTGCCA
1 CACACGACCAGTCACACGCCCATGTGCCAGCCCGTGTGCCA
69770049 CACACGACCAGT
1 CACACGACCAGT
69770061 AGACATGCCC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.26, C:0.44, G:0.19, T:0.12
Consensus pattern (41 bp):
CACACGACCAGTCACACGCCCATGTGCCAGCCCGTGTGCCA
Found at i:69773344 original size:40 final size:40
Alignment explanation
Indices: 69773300--69773525 Score: 305
Period size: 40 Copynumber: 5.7 Consensus size: 40
69773290 TTTGATGTGT
* *
69773300 GTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATG
1 GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
* * *
69773340 GTATCCGGGTTTAAAGACCCACAGGCTAT-ATGCTGGAATT
1 GTATCCGGGTTTAAAGACCCGCAGGCT-TCGTGCTGGAATG
69773380 GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
1 GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
* * * *
69773420 GAATCCGGGTTTAAAGACCCGCAGGCTAT-ATGATGGAATT
1 GTATCCGGGTTTAAAGACCCGCAGGCT-TCGTGCTGGAATG
*
69773460 GTATCTGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
1 GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
* *
69773500 GAATCCGGG-TTAAAGACCCGTAGGCT
1 GTATCCGGGTTTAAAGACCCGCAGGCT
69773526 CATGTTAGAA
Statistics
Matches: 162, Mismatches: 20, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 18 0.11
40 142 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
GTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATG
Found at i:69773432 original size:80 final size:80
Alignment explanation
Indices: 69773299--69773518 Score: 388
Period size: 80 Copynumber: 2.8 Consensus size: 80
69773289 ATTTGATGTG
* *
69773299 TGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATGGTATCCGGGTTTAAAGACCCACAG
1 TGTATCTGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGGTTTAAAGACCCACAG
*
69773364 GCTATATGCTGGAAT
66 GCTATATGATGGAAT
* *
69773379 TGTATCCGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGGTTTAAAGACCCGCAG
1 TGTATCTGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGGTTTAAAGACCCACAG
69773444 GCTATATGATGGAAT
66 GCTATATGATGGAAT
69773459 TGTATCTGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGG-TTAAAGACCC
1 TGTATCTGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGGTTTAAAGACCC
69773519 GTAGGCTCAT
Statistics
Matches: 134, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 10 0.07
80 124 0.93
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (80 bp):
TGTATCTGGGTTTAAAGACCCGCAGGCTTCGTGCTGGAATGGAATCCGGGTTTAAAGACCCACAG
GCTATATGATGGAAT
Found at i:69784069 original size:43 final size:43
Alignment explanation
Indices: 69784021--69784145 Score: 128
Period size: 43 Copynumber: 2.9 Consensus size: 43
69784011 ATCACATATT
* * *
69784021 AATGCCACTGTCCCAGACA-GTGTCTTATACGAAATCA-TATAAC
1 AATGCCAATGTCCCAGACATG-GTCTTACACGAAATCACAAT-AC
* * *
69784064 GATGCCAATGTCTCAGACATGGTCTTACACGTAATCACAATAC
1 AATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATAC
* * * *
69784107 AATGCCAATGTCCCAGATAAGGTCTTACATGTAATCACA
1 AATGCCAATGTCCCAGACATGGTCTTACACGAAATCACA
69784146 TCTCGGTAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 66 0.96
44 3 0.04
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.26
Consensus pattern (43 bp):
AATGCCAATGTCCCAGACATGGTCTTACACGAAATCACAATAC
Found at i:69791874 original size:13 final size:13
Alignment explanation
Indices: 69791856--69791880 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69791846 CCCTTGAAAA
69791856 AATTAAAATTTGT
1 AATTAAAATTTGT
69791869 AATTAAAATTTG
1 AATTAAAATTTG
69791881 AAATGACAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
AATTAAAATTTGT
Found at i:69797438 original size:21 final size:21
Alignment explanation
Indices: 69797414--69797455 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
69797404 TCATTTAAAT
69797414 CCTCAAAATTTTCATATAATC
1 CCTCAAAATTTTCATATAATC
69797435 CCTCAAAATTTTCATATAATC
1 CCTCAAAATTTTCATATAATC
69797456 ATGAACCGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
CCTCAAAATTTTCATATAATC
Found at i:69799721 original size:27 final size:28
Alignment explanation
Indices: 69799637--69799732 Score: 124
Period size: 27 Copynumber: 3.4 Consensus size: 28
69799627 CATGAGATTG
* * *
69799637 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
69799666 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
69799694 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
69799721 GCACTGAGTGTG
1 GCACTAAGTGTG
69799733 TGGACTTAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 22 0.35
28 21 0.34
29 19 0.31
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:69799747 original size:29 final size:27
Alignment explanation
Indices: 69799665--69799748 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
69799655 TAAATTGTTC
* *
69799665 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
69799693 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
* *
69799720 AGCACTGAGTGTGTGGACTTAATATATAT
1 AGCACTAAGTGTG-CGACTTAAT-TATAT
69799749 TTTTGAATCA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 22 0.45
28 22 0.45
29 5 0.10
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.35
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:69806112 original size:43 final size:43
Alignment explanation
Indices: 69805942--69806115 Score: 151
Period size: 43 Copynumber: 4.1 Consensus size: 43
69805932 CATAGGATTT
* * * * *
69805942 TCGATA-TTGATTTCGTGTAAGACGACGTCTGGGACGTTAGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGAGACATTGGCA
* * * *
69805984 TCGAT-TTTGTATTTATGTGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATTTG-A-TTACGTGTAAGACCACGTCTGAGACATTGGCA
** *
69806028 TCG-TATTTGATTTTGTGTAAGACC-CTGTCT-AGGACAGTGGCA
1 TCGATATTTGATTACGTGTAAGACCAC-GTCTGA-GACATTGGCA
* *
69806070 TCGATATTTGATTACATGTAAAACCACGTCTGAGACATTGGCA
1 TCGATATTTGATTACGTGTAAGACCACGTCTGAGACATTGGCA
69806113 TCG
1 TCG
69806116 TACGAGCTTT
Statistics
Matches: 108, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
41 1 0.01
42 35 0.32
43 36 0.33
44 36 0.33
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
TCGATATTTGATTACGTGTAAGACCACGTCTGAGACATTGGCA
Found at i:69811675 original size:40 final size:40
Alignment explanation
Indices: 69811631--69811713 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
69811621 CAATATTTTC
69811631 CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
1 CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
69811671 CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
1 CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
69811711 CAT
1 CAT
69811714 CAAAATGGCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (40 bp):
CATTGATTGAATTCGCATACAATAATAGTTTTCAATCGAG
Found at i:69813749 original size:43 final size:42
Alignment explanation
Indices: 69813594--69813750 Score: 138
Period size: 44 Copynumber: 3.7 Consensus size: 42
69813584 TCTGATTTCG
* * *
69813594 TGTAAGACCACGTCTGGGACGTTGGCATCAATTTGGTATTTACG
1 TGTAAGACCACGTCTGGAACGTTGGCATCAATTTTG-A-TTACA
* ** * * *
69813638 TGTAAAACCATATCTGGGACGTTGGCATCATTTTTGATTTCA
1 TGTAAGACCACGTCTGGAACGTTGGCATCAATTTTGATTACA
* *
69813680 TGTAAGACC-CTGTTTGGGACAG-TGGCATCAATATTTGATTACA
1 TGTAAGACCAC-GTCTGGAAC-GTTGGCATCAAT-TTTGATTACA
* *
69813723 TGTAAGACCACGTCTAGAATGTTGGCAT
1 TGTAAGACCACGTCTGGAACGTTGGCAT
69813751 TGTACAAGCT
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
42 28 0.31
43 31 0.34
44 32 0.35
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGAACGTTGGCATCAATTTTGATTACA
Found at i:69829607 original size:40 final size:40
Alignment explanation
Indices: 69829563--69829756 Score: 318
Period size: 40 Copynumber: 4.9 Consensus size: 40
69829553 GATATAGCTT
* *
69829563 CTCGCTCAAATGCCTTTGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69829603 CTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
* *
69829643 CTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69829683 CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAA
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
69829723 CTCGCACAAATGCCTTCGAG-CTTAGCCCGGTTAT
1 CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
69829757 CAATCCGAAT
Statistics
Matches: 145, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 13 0.09
40 132 0.91
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:69829672 original size:80 final size:80
Alignment explanation
Indices: 69829536--69829756 Score: 322
Period size: 80 Copynumber: 2.8 Consensus size: 80
69829526 AAACCAAGTA
** * * *
69829536 CCTTCGGGGTTTAG-CCGGATATAGCT-TCTCGCTCAAATGCCTTTGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
*
69829599 GTAACTCGCACAATTG
65 GTAACTCGCACAAATG
* * *
69829615 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
69829680 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
69829695 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
69829757 CAATCCGAAT
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
79 26 0.20
80 101 0.80
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.28
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:69843062 original size:43 final size:42
Alignment explanation
Indices: 69842963--69843089 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 42
69842953 TAAATTTTTT
* * * *
69842963 ATTTACATGTAAGACCATGCCCGGGACATTGGCATCGTATATG
1 ATTT-CATGTAAGACCCTGTCTGGGACAGTGGCATCGTATATG
* * * *
69843006 ATTTCGTGTAAGACCCTGTCTGGGTCAGTGGCATTGATATTTG
1 ATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCG-TATATG
69843049 ATTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCAT--TATATG
1 ATTTCATGTAAGACC-CTGTCTGGGACAG-TGGCATCGTATATG
69843089 A
1 A
69843090 GCTTATGAGC
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
40 6 0.09
42 26 0.37
43 37 0.53
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
ATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCGTATATG
Found at i:69847473 original size:13 final size:12
Alignment explanation
Indices: 69847429--69847479 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
69847419 CTAACATTTT
69847429 TTCATTCA-TAA
1 TTCATTCATTAA
* *
69847440 TTGATTTTATTAA
1 TTCA-TTCATTAA
69847453 TTCATTCATTAA
1 TTCATTCATTAA
*
69847465 TTCTCTTCATTAA
1 TTC-ATTCATTAA
69847478 TT
1 TT
69847480 TTTCATATGT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
11 3 0.09
12 13 0.41
13 16 0.50
ACGTcount: A:0.29, C:0.14, G:0.02, T:0.55
Consensus pattern (12 bp):
TTCATTCATTAA
Found at i:69855850 original size:27 final size:27
Alignment explanation
Indices: 69855695--69855848 Score: 197
Period size: 27 Copynumber: 5.7 Consensus size: 27
69855685 ACGGGCATTT
**
69855695 TACCCTACAAAGGTATTTCGGTAATCC
1 TACCCTACAGGGGTATTTCGGTAATCC
69855722 TACCCTACAGGGGTA-TTCTGGTAATCC
1 TACCCTACAGGGGTATTTC-GGTAATCC
*
69855749 TACCCTACAAGGGTA-TTCTGGTAATCC
1 TACCCTACAGGGGTATTTC-GGTAATCC
* *
69855776 TACCCTACAGAGGTATTTCGATAATCC
1 TACCCTACAGGGGTATTTCGGTAATCC
*
69855803 TACCCTACAGGGGTATTTCAGTAATCC
1 TACCCTACAGGGGTATTTCGGTAATCC
*
69855830 TA-CCTCATAGGGGTATTTC
1 TACCCT-ACAGGGGTATTTC
69855849 AGAAATTTCA
Statistics
Matches: 114, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
26 6 0.05
27 105 0.92
28 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATCC
Found at i:69855902 original size:26 final size:27
Alignment explanation
Indices: 69855844--69855914 Score: 92
Period size: 26 Copynumber: 2.7 Consensus size: 27
69855834 TCATAGGGGT
* *
69855844 ATTTCAGA-AATTTCACAAATCAAGGGT
1 ATTTCA-ATAATTTTACAAATCAAGGGC
*
69855871 ATTTCAATAATTTTACAAGTC-AGGGC
1 ATTTCAATAATTTTACAAATCAAGGGC
69855897 ATTTCAATAATTTTACAA
1 ATTTCAATAATTTTACAA
69855915 CACGGAGGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 23 0.57
27 17 0.43
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.35
Consensus pattern (27 bp):
ATTTCAATAATTTTACAAATCAAGGGC
Found at i:69855935 original size:27 final size:26
Alignment explanation
Indices: 69855839--69856111 Score: 190
Period size: 27 Copynumber: 10.2 Consensus size: 26
69855829 CTACCTCATA
* * * *
69855839 GGGGTATTTCAGAAATTTCACAAATCA
1 GGGGTATTTTAGTAATTTTACAAAT-G
* * * * *
69855866 AGGGTATTTCAATAATTTTACAAGTC
1 GGGGTATTTTAGTAATTTTACAAATG
* * * * *
69855892 AGGGCATTTCAATAATTTTACAACACG
1 GGGGTATTTTAGTAATTTTACAA-ATG
*
69855919 GAGGTATTTTAGTAATTTTACAAATTG
1 GGGGTATTTTAGTAATTTTACAAA-TG
69855946 GGGGTA-TTTAGGTAATTTTACAAACTG
1 GGGGTATTTTA-GTAATTTTACAAA-TG
* *
69855973 GGGGTATTTTGGTAATTTTACAATTTG
1 GGGGTATTTTAGTAATTTTACAA-ATG
** ** *
69856000 AAGGTATTTCGGTAAATTTACAAACTG
1 GGGGTATTTTAGTAATTTTACAAA-TG
* *
69856027 GGGGTA-TTTCGATAATTTTACAATCTG
1 GGGGTATTTTAG-TAATTTTACAA-ATG
* *
69856054 GGGGTATTTTGGTAATTTTACAATCTG
1 GGGGTATTTTAGTAATTTTACAA-ATG
* *
69856081 GGGGTATTTTAGAAATTTTACAAATC
1 GGGGTATTTTAGTAATTTTACAAATG
69856107 GGGGT
1 GGGGT
69856112 CTTAACGACC
Statistics
Matches: 201, Mismatches: 36, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
26 36 0.18
27 158 0.79
28 7 0.03
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.38
Consensus pattern (26 bp):
GGGGTATTTTAGTAATTTTACAAATG
Found at i:69855980 original size:54 final size:54
Alignment explanation
Indices: 69855904--69856110 Score: 258
Period size: 54 Copynumber: 3.8 Consensus size: 54
69855894 GGCATTTCAA
*
69855904 TAATTTTACAACAC-GGAGGTATTTTAGTAATTTTACAAATTGGGGGTATTTAGG
1 TAATTTTACAA-ACTGGGGGTATTTTAGTAATTTTACAAATTGGGGGTATTTAGG
* * ** *
69855958 TAATTTTACAAACTGGGGGTATTTTGGTAATTTTACAATTTGAAGGTATTTCGG
1 TAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAAATTGGGGGTATTTAGG
* * *
69856012 TAAATTTACAAACTGGGGGTA-TTTCGATAATTTTAC-AATCTGGGGGTATTTTGG
1 TAATTTTACAAACTGGGGGTATTTTAG-TAATTTTACAAAT-TGGGGGTATTTAGG
* * *
69856066 TAATTTTACAATCTGGGGGTATTTTAGAAATTTTACAAATCGGGG
1 TAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAAATTGGGG
69856111 TCTTAACGAC
Statistics
Matches: 131, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
53 8 0.06
54 116 0.89
55 7 0.05
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (54 bp):
TAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAAATTGGGGGTATTTAGG
Found at i:69856021 original size:81 final size:81
Alignment explanation
Indices: 69855920--69856104 Score: 255
Period size: 81 Copynumber: 2.3 Consensus size: 81
69855910 TACAACACGG
* * * *
69855920 AGGTATTTTAGTAATTTTACAAATTGGGGGTATTTAGGTAATTTTACAAACTGGGGGTATTTTGG
1 AGGTATTTCAGTAAATTTACAAACTGGGGGTATTTAGATAATTTTACAAACTGGGGGTATTTTGG
69855985 TAATTTTACAATTTGA
66 TAATTTTACAATTTGA
* * *
69856001 AGGTATTTCGGTAAATTTACAAACTGGGGGTATTTCGATAATTTTACAATCTGGGGGTATTTTGG
1 AGGTATTTCAGTAAATTTACAAACTGGGGGTATTTAGATAATTTTACAAACTGGGGGTATTTTGG
* *
69856066 TAATTTTACAATCTGG
66 TAATTTTACAATTTGA
* *
69856082 GGGTATTTTAG-AAATTTTACAAA
1 AGGTATTTCAGTAAA-TTTACAAA
69856105 TCGGGGTCTT
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
80 3 0.03
81 88 0.97
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (81 bp):
AGGTATTTCAGTAAATTTACAAACTGGGGGTATTTAGATAATTTTACAAACTGGGGGTATTTTGG
TAATTTTACAATTTGA
Found at i:69862463 original size:68 final size:66
Alignment explanation
Indices: 69862389--69862560 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
69862379 CATCATGTGT
* * * *
69862389 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
69862452 TGTAG
62 TGTAG
** * *
69862457 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
69862522 AG
65 AG
* * * *
69862524 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
69862561 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:69862494 original size:64 final size:64
Alignment explanation
Indices: 69862413--69862595 Score: 201
Period size: 67 Copynumber: 2.8 Consensus size: 64
69862403 AGACATTATG
* * *
69862413 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
69862477 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
69862542 AA
63 AA
* * *
69862544 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
69862596 TCGAACTATA
Statistics
Matches: 98, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.18
64 25 0.26
66 21 0.21
67 33 0.34
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:69865303 original size:40 final size:40
Alignment explanation
Indices: 69865257--69865481 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
69865247 CTTGTGCAAG
* * *
69865257 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
69865297 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
69865337 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
69865377 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
69865417 GCCTTCGGATCTTAGTCC-GATTGTAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGA-TATAGTCA-CTAGCACAAAT
* *
69865458 GCCTTCGGGACTTAGCCCAGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
69865482 CATTCGAATA
Statistics
Matches: 157, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.02
40 126 0.80
41 26 0.17
42 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:69873558 original size:40 final size:40
Alignment explanation
Indices: 69873500--69873724 Score: 328
Period size: 40 Copynumber: 5.6 Consensus size: 40
69873490 TGGATGATAA
* *
69873500 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
69873540 CCAGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
* *
69873580 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
69873620 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * ** *
69873660 CCGGGCTAAGACCCGACGGCATTTGTATGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
69873700 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
69873725 AGCAAGTAGT
Statistics
Matches: 167, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 164 0.98
41 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:69878103 original size:29 final size:29
Alignment explanation
Indices: 69878064--69878142 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
69878054 CTTAATAATC
*
69878064 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
69878094 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
69878123 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69878143 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:69878185 original size:43 final size:43
Alignment explanation
Indices: 69878124--69878226 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
69878114 TGCATTTCAA
69878124 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
69878167 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
69878210 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
69878227 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:69880141 original size:37 final size:37
Alignment explanation
Indices: 69880091--69880169 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
69880081 TTATTACGAA
* *
69880091 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
69880128 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
69880165 GTCTT
1 GTCTT
69880170 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:69880366 original size:47 final size:47
Alignment explanation
Indices: 69880288--69880822 Score: 921
Period size: 47 Copynumber: 11.4 Consensus size: 47
69880278 CCCTTCGGGA
* * * * * * *
69880288 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69880335 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69880382 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69880429 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69880476 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69880523 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
69880570 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69880617 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69880664 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69880711 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69880757 CTTATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69880803 CTTATCACATATATACACTT
1 CTTATCACATATATACACTT
69880823 CTTGGCTGAA
Statistics
Matches: 469, Mismatches: 17, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
45 28 0.06
46 34 0.07
47 407 0.87
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Done.