Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 207 of 345
Found at i:70270731 original size:21 final size:22
Alignment explanation
Indices: 70270705--70270751 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
70270695 CTCTGCTCAA
*
70270705 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
70270726 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
70270748 ACTC
1 ACTC
70270752 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:70273701 original size:27 final size:26
Alignment explanation
Indices: 70273653--70273708 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
70273643 GCAGCAACTA
*
70273653 ATTAAATTTGTCTCTAAGCTAGACAC
1 ATTAAATTTGTCTCTAAACTAGACAC
70273679 ATTAAATTGATGTC-CTAAACTAGACAC
1 ATTAAATT--TGTCTCTAAACTAGACAC
70273706 ATT
1 ATT
70273709 TAAGCTATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.30
27 15 0.56
28 4 0.15
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (26 bp):
ATTAAATTTGTCTCTAAACTAGACAC
Found at i:70276969 original size:13 final size:13
Alignment explanation
Indices: 70276939--70276981 Score: 59
Period size: 14 Copynumber: 3.2 Consensus size: 13
70276929 TTTCCACTCA
*
70276939 TTTTCTTTTCATCT
1 TTTTATTTTC-TCT
70276953 TTTTATTTTGCTCT
1 TTTTATTTT-CTCT
70276967 TTTTATTTTCTCT
1 TTTTATTTTCTCT
70276980 TT
1 TT
70276982 CAATGGATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 6 0.22
14 20 0.74
15 1 0.04
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.74
Consensus pattern (13 bp):
TTTTATTTTCTCT
Found at i:70279016 original size:11 final size:11
Alignment explanation
Indices: 70279000--70279041 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
70278990 TACCAATCAC
70279000 TTTTTTTCAAT
1 TTTTTTTCAAT
*
70279011 TTTTTTT-AAA
1 TTTTTTTCAAT
*
70279021 TTTTTTTCGAT
1 TTTTTTTCAAT
70279032 TTTTTTTCAA
1 TTTTTTTCAA
70279042 CTTCGAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.71
Consensus pattern (11 bp):
TTTTTTTCAAT
Found at i:70279046 original size:17 final size:16
Alignment explanation
Indices: 70279026--70279059 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
70279016 TTAAATTTTT
*
70279026 TTCGATTTTTTTTCAAC
1 TTCGAATTTTTTT-AAC
70279043 TTCGAATTTTTTTAAC
1 TTCGAATTTTTTTAAC
70279059 T
1 T
70279060 ACAAAATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.21, C:0.15, G:0.06, T:0.59
Consensus pattern (16 bp):
TTCGAATTTTTTTAAC
Found at i:70280411 original size:27 final size:26
Alignment explanation
Indices: 70280363--70280418 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
70280353 GCAGCAACTA
*
70280363 ATTAAATTTGTCTCTAAGCTAGACAC
1 ATTAAATTTGTCTCTAAACTAGACAC
70280389 ATTAAATTGATGTC-CTAAACTAGACAC
1 ATTAAATT--TGTCTCTAAACTAGACAC
70280416 ATT
1 ATT
70280419 TAAGCTATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.30
27 15 0.56
28 4 0.15
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (26 bp):
ATTAAATTTGTCTCTAAACTAGACAC
Found at i:70280808 original size:16 final size:16
Alignment explanation
Indices: 70280787--70280857 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
70280777 GGTTGGTTCA
* *
70280787 CTGTAATGGAATAGGG
1 CTGTAATAGAATAGAG
*
70280803 CTGTAATTGAATAGAG
1 CTGTAATAGAATAGAG
*
70280819 CTGTAATAAAATAGAG
1 CTGTAATAGAATAGAG
* *
70280835 ATGTAATAGAATAGAA
1 CTGTAATAGAATAGAG
70280851 CTGTAAT
1 CTGTAAT
70280858 CAGTAATTCA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.28
Consensus pattern (16 bp):
CTGTAATAGAATAGAG
Found at i:70281056 original size:26 final size:26
Alignment explanation
Indices: 70281027--70281119 Score: 80
Period size: 26 Copynumber: 3.4 Consensus size: 26
70281017 GTTATTAAAT
70281027 TTTAATAAAATTATTATTAAAAATAA
1 TTTAATAAAATTATTATTAAAAATAA
* **
70281053 TTTAATAAAAATAATAATAATTTAACCAT-A
1 TTTAAT-AAAAT--T-ATTA-TTAAAAATAA
* * *
70281083 TTTAACATAATTATTATTAAATATAA
1 TTTAATAAAATTATTATTAAAAATAA
70281109 TTTAATAAAAT
1 TTTAATAAAAT
70281120 AATATATAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
25 6 0.12
26 19 0.37
27 6 0.12
29 5 0.10
30 9 0.18
31 6 0.12
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (26 bp):
TTTAATAAAATTATTATTAAAAATAA
Found at i:70281063 original size:14 final size:14
Alignment explanation
Indices: 70281027--70281067 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
70281017 GTTATTAAAT
*
70281027 TTTAAT-AAAATTA
1 TTTAATAAAAATAA
*
70281040 -TTATTAAAAATAA
1 TTTAATAAAAATAA
70281053 TTTAATAAAAATAA
1 TTTAATAAAAATAA
70281067 T
1 T
70281068 AATAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 4 0.17
13 6 0.26
14 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAATAAAAATAA
Found at i:70281149 original size:56 final size:56
Alignment explanation
Indices: 70281022--70281157 Score: 177
Period size: 56 Copynumber: 2.4 Consensus size: 56
70281012 TTATTGTTAT
*
70281022 TAAATTTTAATAAAATTATTATTAAAAATAATTTAATAAAAATAATAATAATTTAAC
1 TAAATTTT-ATATAATTATTATTAAAAATAATTTAATAAAAATAATAATAATTTAAC
* * * * *
70281079 CATATTTAACATAATTATTATTAAATATAATTTAAT-AAAATAATATATAATTTAA-
1 TAAATTTTATATAATTATTATTAAAAATAATTTAATAAAAATAATA-ATAATTTAAC
70281134 TAAATTCTTATATAATTATTATTA
1 TAAATT-TTATATAATTATTATTA
70281158 TATGAATTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
55 13 0.19
56 49 0.73
57 5 0.07
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (56 bp):
TAAATTTTATATAATTATTATTAAAAATAATTTAATAAAAATAATAATAATTTAAC
Found at i:70281225 original size:54 final size:61
Alignment explanation
Indices: 70281164--70281280 Score: 176
Period size: 61 Copynumber: 2.0 Consensus size: 61
70281154 ATTATATGAA
70281164 TTAAAAAATCAT-A-ATAT-AT-CTAT-AA-AATATATAATCTACTTTATTA-TTTTAAAC
1 TTAAAAAATCATAATATATAATACTATAAATAATATATAATCTACTTTATTATTTTTAAAC
70281218 TTAAAAAATCATAATATATAATACTATAAAATAATATATAATCTACTTTATTATTTTTAAAC
1 TTAAAAAATCATAATATATAATACTAT-AAATAATATATAATCTACTTTATTATTTTTAAAC
70281280 T
1 T
70281281 GCAAACATTT
Statistics
Matches: 55, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
54 12 0.22
55 1 0.02
56 4 0.07
57 2 0.04
58 4 0.07
60 2 0.04
61 21 0.38
62 9 0.16
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.43
Consensus pattern (61 bp):
TTAAAAAATCATAATATATAATACTATAAATAATATATAATCTACTTTATTATTTTTAAAC
Found at i:70283769 original size:72 final size:73
Alignment explanation
Indices: 70283642--70283783 Score: 198
Period size: 72 Copynumber: 2.0 Consensus size: 73
70283632 TACAAGTAAT
* *
70283642 TAACATTTACTAGCTATCAAAGTTGTAAAAAACCCAAAAAAAATCAAAAATTGCAATGAAAACA-
1 TAACATTTACCAGCTATCAAAGTTGTAAAAAACCCAAAAAAAATCAAAAATTGCAAAGAAAACAT
70283706 GAGAAAAA
66 GAGAAAAA
* ** **
70283714 TAACATTTACCAGCTATCGAAGTTGTAAAAAACCCAGTAAAAATGGGAAAA-TGCAAAGAAAACA
1 TAACATTTACCAGCTATCAAAGTTGTAAAAAACCCAAAAAAAAT-CAAAAATTGCAAAGAAAACA
70283778 TGAGAA
65 TGAGAA
70283784 TTTAAAGAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
72 52 0.85
73 9 0.15
ACGTcount: A:0.54, C:0.14, G:0.13, T:0.19
Consensus pattern (73 bp):
TAACATTTACCAGCTATCAAAGTTGTAAAAAACCCAAAAAAAATCAAAAATTGCAAAGAAAACAT
GAGAAAAA
Found at i:70284334 original size:13 final size:13
Alignment explanation
Indices: 70284316--70284342 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
70284306 GAAGTAATCG
70284316 CATACGGGCGTGT
1 CATACGGGCGTGT
70284329 CATACGGGCGTGT
1 CATACGGGCGTGT
70284342 C
1 C
70284343 CCTATCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CATACGGGCGTGT
Found at i:70286368 original size:18 final size:19
Alignment explanation
Indices: 70286335--70286371 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
70286325 TATTTATTTA
70286335 TTTAAAAATTATATTTAAAT
1 TTTAAAAA-TATATTTAAAT
70286355 TTTAAAAA-ATATTTAAA
1 TTTAAAAATATATTTAAA
70286372 ATATATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
20 8 0.47
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTAAAAATATATTTAAAT
Found at i:70286368 original size:31 final size:33
Alignment explanation
Indices: 70286333--70286398 Score: 93
Period size: 31 Copynumber: 2.1 Consensus size: 33
70286323 CTTATTTATT
*
70286333 TATTTAAAA-ATTATATTT-AAATTTTA-AAAAA
1 TATTTAAAATA-TATATTTAAAATATTATAAAAA
70286364 TATTTAAAATATATATTTAAAATATTATAAAAA
1 TATTTAAAATATATATTTAAAATATTATAAAAA
70286397 TA
1 TA
70286399 ATAATAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 16 0.52
32 8 0.26
33 7 0.23
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (33 bp):
TATTTAAAATATATATTTAAAATATTATAAAAA
Found at i:70286381 original size:13 final size:13
Alignment explanation
Indices: 70286355--70286388 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
70286345 ATATTTAAAT
70286355 TTTAAAA-A-ATA
1 TTTAAAATATATA
70286366 TTTAAAATATATA
1 TTTAAAATATATA
70286379 TTTAAAATAT
1 TTTAAAATAT
70286389 TATAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.33
12 1 0.05
13 13 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTAAAATATATA
Found at i:70286477 original size:25 final size:25
Alignment explanation
Indices: 70286426--70286482 Score: 73
Period size: 23 Copynumber: 2.4 Consensus size: 25
70286416 TCATATCTTT
*
70286426 AAAAATAATATATTTTAAATAATTA
1 AAAAATAATATATTTAAAATAATTA
*
70286451 AAAAATCATA-ATTTAAAAT-ATTA
1 AAAAATAATATATTTAAAATAATTA
*
70286474 TAAAATAAT
1 AAAAATAAT
70286483 TTAAAAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 11 0.39
24 8 0.29
25 9 0.32
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (25 bp):
AAAAATAATATATTTAAAATAATTA
Found at i:70286499 original size:31 final size:31
Alignment explanation
Indices: 70286442--70286519 Score: 88
Period size: 31 Copynumber: 2.4 Consensus size: 31
70286432 AATATATTTT
*
70286442 AAATAATTAAAAAATCATAATTTAAAATATTATA
1 AAATAATTTAAAAA-CATAATTTAAAAT-TTA-A
70286476 AAATAATTTAAAAA-AT-ATTTAAAATTTAA
1 AAATAATTTAAAAACATAATTTAAAATTTAA
70286505 AATATATATTTAAAA
1 AA-ATA-ATTTAAAA
70286520 TATTATAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
29 3 0.07
30 6 0.15
31 17 0.41
32 2 0.05
34 13 0.32
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (31 bp):
AAATAATTTAAAAACATAATTTAAAATTTAA
Found at i:70286515 original size:20 final size:20
Alignment explanation
Indices: 70286460--70286520 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
70286450 AAAAAATCAT
**
70286460 AATTTAAAATAT-TATAAAA
1 AATTTAAAATATATATTTAA
70286479 TAATTTAAAA-A-ATATTTAA
1 -AATTTAAAATATATATTTAA
70286498 AATTTAAAATATATATTTAA
1 AATTTAAAATATATATTTAA
70286518 AAT
1 AAT
70286521 ATTATAAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 9 0.25
19 7 0.19
20 20 0.56
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AATTTAAAATATATATTTAA
Found at i:70286589 original size:134 final size:131
Alignment explanation
Indices: 70286365--70286656 Score: 391
Period size: 134 Copynumber: 2.2 Consensus size: 131
70286355 TTTAAAAAAT
70286365 ATTTAAAATATATATTTAAAATATTATAAAAATAATAATAAATTTGAAAGGTCATATCTTTAAAA
1 ATTTAAAATATATATTTAAAATATTATAAAAATAATAATAAATTTGAAAGGTCATATCTTTAAAA
* *
70286430 ATAATATATTTTAAATAATTAAAAAATCATAATTTAAAATATTATAAAATAATTT-AAAA-AATA
66 ATAATAAATTTTAAATAATTAAAAAAT-AT-ATTT--AATATT-TAAAAAAATTTAAAAATAATA
70286493 TTTAAA
126 TTTAAA
70286499 ATTTAAAATATATATTTAAAATATTATAAAACA-AATAATAAATTTGAAAGGTCATATCTTT-AA
1 ATTTAAAATATATATTTAAAATATTATAAAA-ATAATAATAAATTTGAAAGGTCATATCTTTAAA
* * *
70286562 AATATTTAAATGTTTATATTATT-AAAAATATATTTAATATTTAAAAAAATTTAAAAATAATATT
65 AATA-ATAAAT-TTTAAATAATTAAAAAATATATTTAATATTTAAAAAAATTTAAAAATAATATT
70286626 TAAA
128 TAAA
* *
70286630 ATTTAGAAAAATA-ATTTCAAA-ATTATA
1 ATTTA-AAATATATATTTAAAATATTATA
70286657 TATTTAAAAT
Statistics
Matches: 145, Mismatches: 7, Indels: 16
0.86 0.04 0.10
Matches are distributed among these distances:
129 10 0.07
130 16 0.11
131 22 0.15
132 10 0.07
133 8 0.06
134 69 0.48
135 10 0.07
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (131 bp):
ATTTAAAATATATATTTAAAATATTATAAAAATAATAATAAATTTGAAAGGTCATATCTTTAAAA
ATAATAAATTTTAAATAATTAAAAAATATATTTAATATTTAAAAAAATTTAAAAATAATATTTAA
A
Found at i:70286630 original size:20 final size:20
Alignment explanation
Indices: 70286607--70286653 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
70286597 AATATTTAAA
*
70286607 AAAATTT-AAAAATAATATTT
1 AAAATTTAAAAAATAAT-TTC
70286627 AAAATTTAGAAAAATAATTTC
1 AAAATTTA-AAAAATAATTTC
70286648 AAAATT
1 AAAATT
70286654 ATATATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 7 0.29
21 8 0.33
22 9 0.38
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATTTAAAAAATAATTTC
Found at i:70287050 original size:13 final size:13
Alignment explanation
Indices: 70287032--70287056 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70287022 GTTTTATAAT
70287032 ATTTTAAATTATG
1 ATTTTAAATTATG
70287045 ATTTTAAATTAT
1 ATTTTAAATTAT
70287057 TTAAAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
ATTTTAAATTATG
Found at i:70287057 original size:23 final size:24
Alignment explanation
Indices: 70287023--70287073 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
70287013 TTTTTATTTG
*
70287023 TTTTATAATATTTTAAAT-TATGA
1 TTTTATAATATTTAAAATATATGA
*
70287046 TTTTA-AATTATTTAAAATATATTA
1 TTTTATAA-TATTTAAAATATATGA
70287070 TTTT
1 TTTT
70287074 TAAAGATATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 2 0.08
23 14 0.58
24 8 0.33
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (24 bp):
TTTTATAATATTTAAAATATATGA
Found at i:70287071 original size:51 final size:49
Alignment explanation
Indices: 70286958--70287072 Score: 142
Period size: 51 Copynumber: 2.3 Consensus size: 49
70286948 ATGAACTTTC
*
70286958 AAATTTATTATTAGTTTTATAATATTTTAAATGTAAATTTTAAATTTTA
1 AAATTTATTATTTGTTTTATAATATTTTAAATGTAAATTTTAAATTTTA
* *
70287007 AATATTTTTTTATTTGTTTTATAATATTTTAAAT-TATGATTTTAAATTATTTA
1 AA-A-TTTATTATTTGTTTTATAATATTTTAAATGTA-AATTTTAAA-T-TTTA
*
70287060 AAATATATTATTT
1 AAATTTATTATTT
70287073 TTAAAGATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
49 2 0.04
50 3 0.05
51 43 0.77
52 2 0.04
53 6 0.11
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (49 bp):
AAATTTATTATTTGTTTTATAATATTTTAAATGTAAATTTTAAATTTTA
Found at i:70287142 original size:11 final size:13
Alignment explanation
Indices: 70287108--70287146 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
70287098 TTATTTATTT
70287108 TATACTATTTTAAA
1 TATA-TATTTTAAA
70287122 TATATATTTTAAA
1 TATATATTTTAAA
70287135 TAT-T-TTTTAAA
1 TATATATTTTAAA
70287146 T
1 T
70287147 TTTAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 8 0.32
12 1 0.04
13 12 0.48
14 4 0.16
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (13 bp):
TATATATTTTAAA
Found at i:70287162 original size:21 final size:20
Alignment explanation
Indices: 70287127--70287208 Score: 91
Period size: 18 Copynumber: 4.1 Consensus size: 20
70287117 TTAAATATAT
70287127 ATTTTAAATAT--TTTTTAA
1 ATTTTAAATATAATTTTTAA
70287145 ATTTTAAATATAATTTTTAA
1 ATTTTAAATATAATTTTTAA
*
70287165 A--TAAATATATAATATTTTTAAA
1 ATTTTAA-ATAT-A-ATTTTT-AA
70287187 ATTTTAAATATAATTTTTAA
1 ATTTTAAATATAATTTTTAA
70287207 AT
1 AT
70287209 AAATAAATAA
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
18 14 0.26
19 4 0.07
20 13 0.24
21 12 0.22
22 4 0.07
23 4 0.07
24 3 0.06
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTAAATATAATTTTTAA
Found at i:70287189 original size:42 final size:42
Alignment explanation
Indices: 70287115--70287218 Score: 154
Period size: 42 Copynumber: 2.4 Consensus size: 42
70287105 TTTTATACTA
* * *
70287115 TTTTAAATATATATTTTAAATATTTTTTAAATTTTAAATATAAT
1 TTTTAAATAAATA-TAT-AATATTTTTAAAATTTTAAATATAAT
70287159 TTTTAAATAAATATATAATATTTTTAAAATTTTAAATATAAT
1 TTTTAAATAAATATATAATATTTTTAAAATTTTAAATATAAT
*
70287201 TTTTAAATAAATAAATAA
1 TTTTAAATAAATATATAA
70287219 GGAAAAATAA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
42 42 0.75
43 2 0.04
44 12 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (42 bp):
TTTTAAATAAATATATAATATTTTTAAAATTTTAAATATAAT
Found at i:70287215 original size:21 final size:21
Alignment explanation
Indices: 70287149--70287217 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
70287139 TTTTAAATTT
70287149 TAAATATAATTTTTAAATAAA
1 TAAATATAATTTTTAAATAAA
* **
70287170 TATATA-ATATTTTTAAA-ATTT
1 TAAATATA-ATTTTTAAATA-AA
70287191 TAAATATAATTTTTAAATAAA
1 TAAATATAATTTTTAAATAAA
70287212 TAAATA
1 TAAATA
70287218 AGGAAAAATA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
20 2 0.05
21 34 0.89
22 2 0.05
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TAAATATAATTTTTAAATAAA
Found at i:70289826 original size:30 final size:28
Alignment explanation
Indices: 70289783--70289839 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 28
70289773 TCTTTTTTAA
*
70289783 GGTTTATGCTTATAAATTTTTATAAAAATT
1 GGTTTATGCTTAT-AATATTTA-AAAAATT
**
70289813 GGTTTATTTTTATAATATTTAAAAAAT
1 GGTTTATGCTTATAATATTTAAAAAAT
70289840 AATCTTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.25
29 7 0.29
30 11 0.46
ACGTcount: A:0.39, C:0.02, G:0.09, T:0.51
Consensus pattern (28 bp):
GGTTTATGCTTATAATATTTAAAAAATT
Found at i:70293134 original size:15 final size:15
Alignment explanation
Indices: 70293114--70293144 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
70293104 AAATTTATAA
70293114 TAAATATTCAAGAAG
1 TAAATATTCAAGAAG
70293129 TAAATATTCAAGAAG
1 TAAATATTCAAGAAG
70293144 T
1 T
70293145 TCAAGGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (15 bp):
TAAATATTCAAGAAG
Found at i:70297117 original size:42 final size:42
Alignment explanation
Indices: 70297016--70297251 Score: 171
Period size: 43 Copynumber: 5.5 Consensus size: 42
70297006 CAATGCTGAC
* * * **
70297016 GTCCCAGACGTGGTCTTACATGTAATTCA-ATATCGATGCCTCT
1 GTCCCAGACATGGTCTTACACG-AAATCAGATA-CGATGCCGAT
* * **
70297059 GTTCTAGACAAAGTCTTACACGAAATCAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGAT
* * * *
70297101 GTCCCAGATATGGTCTTATACGTAAATTTCA-AT-CGAGGTCTG-T
1 GTCCCAGACATGGTCTTACACG-AAA--TCAGATACGATG-CCGAT
*
70297144 ATCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGAT
1 GTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGAT
* * *
70297186 GTCCCAGACATGGTCTTATACATAAATCTCA-AT-CGAGGCCTG-T
1 GTCCCAGACATGGTCTTACAC-GAAA--TCAGATACGATGCC-GAT
*
70297229 GTCCCAGACACGGTCTTACACGA
1 GTCCCAGACATGGTCTTACACGA
70297252 TGTCTTAGAC
Statistics
Matches: 152, Mismatches: 29, Indels: 25
0.74 0.14 0.12
Matches are distributed among these distances:
40 3 0.02
41 4 0.03
42 57 0.38
43 75 0.49
44 7 0.05
45 6 0.04
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGAT
Found at i:70297153 original size:85 final size:85
Alignment explanation
Indices: 70297064--70297251 Score: 304
Period size: 85 Copynumber: 2.2 Consensus size: 85
70297054 CCTCTGTTCT
* * * *
70297064 AGACAAAGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGATATGGTCTTATACGTAAATT
1 AGACAAGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACATAAATC
*
70297129 TCAATCGAGGTCTGTATCCC
66 TCAATCGAGGCCTGTATCCC
*
70297149 AGACATGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACATAAATC
1 AGACAAGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACATAAATC
*
70297214 TCAATCGAGGCCTGTGTCCC
66 TCAATCGAGGCCTGTATCCC
*
70297234 AGACACGGTCTTACACGA
1 AGACAAGGTCTTACACGA
70297252 TGTCTTAGAC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 95 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (85 bp):
AGACAAGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACATAAATC
TCAATCGAGGCCTGTATCCC
Found at i:70304355 original size:47 final size:47
Alignment explanation
Indices: 70304297--70304740 Score: 649
Period size: 47 Copynumber: 9.4 Consensus size: 47
70304287 TGTACAAGTA
* * *
70304297 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAACATG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
*
70304344 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * * *
70304391 CATATTTGAGATAAGGCCGAATGGCCAATATGATGAATGTGAACATG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
*
70304438 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
70304485 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
*
70304532 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
*
70304579 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
70304626 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* * *
70304673 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
** *
70304720 TATAAATGTGATAAGTCCGAA
1 TATATGTGTGATAAGGCCGAA
70304741 GGGCAATTGT
Statistics
Matches: 363, Mismatches: 32, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 359 0.99
48 3 0.01
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
TATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:70304612 original size:22 final size:22
Alignment explanation
Indices: 70304585--70304706 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
70304575 CATGTGTATG
70304585 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
70304607 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
70304632 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
70304654 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
70304679 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
70304701 TGTGAT
1 TGTGAT
70304707 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:70307108 original size:39 final size:40
Alignment explanation
Indices: 70307009--70307232 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
70306999 TCGAATGATG
* * *
70307009 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* * *
70307048 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
70307088 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
70307127 TCCGGGCCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGG-CTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
70307167 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AA
*
70307208 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70307233 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
39 45 0.28
40 104 0.65
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:70307188 original size:80 final size:79
Alignment explanation
Indices: 70307009--70307230 Score: 222
Period size: 79 Copynumber: 2.8 Consensus size: 79
70306999 TCGAATGATG
* * * *
70307009 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTA-AGTGACCAT-ATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGA-T-ACTATAAT-CGGGCTAAG-TCCCGAAGGCA
* *
70307070 TTTGTACGAGATACTAAT
62 TTGGTACGAGATACTAAA
* *
70307088 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATAAT-CGGG-CTAAGTCCCGAAGGCATT
* *
70307151 GGTGCGAGTTACTAAA
64 GGTACGAGATACTAAA
* * *
70307167 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTATAATCGGGCTAAGTCCCGAAGGCATT
70307231 TGAACGAGTA
Statistics
Matches: 120, Mismatches: 15, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
79 62 0.52
80 55 0.46
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATAATCGGGCTAAGTCCCGAAGGCATTGG
TACGAGATACTAAA
Found at i:70307239 original size:80 final size:78
Alignment explanation
Indices: 70307061--70307256 Score: 225
Period size: 80 Copynumber: 2.5 Consensus size: 78
70307051 GGACTAAGAT
* * *
70307061 CCGAAGGCATTTGTACGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
1 CCGAAGGCATTTGTACGAG-TACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTAA
*
70307126 TTCCGGGCCTAAGC
65 ATCCGGGCCTAAGC
* * *
70307140 CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTACGAG-TACTAAATCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGATACTA
*
70307205 TAAT-CGGG-CTATGTC
64 -AATCCGGGCCTAAG-C
* * *
70307220 CCGAAGGCATTTGAACGAGTAGCTATATCCGGTTTAA
1 CCGAAGGCATTTGTACGAGTA-CTAAATCCGGGTTAA
70307257 TAAATTTTGA
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
79 38 0.38
80 59 0.60
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTACGAGTACTAAATCCGGGTTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
TCCGGGCCTAAGC
Found at i:70310161 original size:40 final size:42
Alignment explanation
Indices: 70310117--70310226 Score: 156
Period size: 41 Copynumber: 2.7 Consensus size: 42
70310107 AGATACAAGT
* *
70310117 TCCGGGTTAAG-CCCGAGAGGCCTTTGTGCGAGTTATTAAA-
1 TCCGGGTTAAGTCCCGAGAGGCATTCGTGCGAGTTATTAAAC
70310157 TCCGGGTTTAAGTCCCGA-AGGCATTCGTGCGAGTTATTAAAC
1 TCCGGG-TTAAGTCCCGAGAGGCATTCGTGCGAGTTATTAAAC
70310199 TCCGGG-TAAGATCCCGAGAGGCATTCGT
1 TCCGGGTTAAG-TCCCGAGAGGCATTCGT
70310227 TATGGGAAGC
Statistics
Matches: 63, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
40 10 0.16
41 32 0.51
42 21 0.33
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (42 bp):
TCCGGGTTAAGTCCCGAGAGGCATTCGTGCGAGTTATTAAAC
Found at i:70312632 original size:39 final size:40
Alignment explanation
Indices: 70312532--70312755 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
70312522 TCGAATGATG
* * *
70312532 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* * *
70312572 TCCGGACTAAGAT-CCGAAGGCATTTGTACGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
70312612 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
70312651 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
70312690 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AA
*
70312731 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70312756 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 71 0.44
40 77 0.48
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:70312706 original size:79 final size:80
Alignment explanation
Indices: 70312532--70312753 Score: 240
Period size: 79 Copynumber: 2.8 Consensus size: 80
70312522 TCGAATGATG
* * * *
70312532 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCGGGCTAAGACCCGAAGGCA
* *
70312594 TTTGTACGAGATACTAAT
63 TTGGTACGAGATACTAAA
*
70312612 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTG
* *
70312675 GTGCGAGTTACTAAA
66 GTACGAGATACTAAA
* * * * *
70312690 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAGACCCGAAGGCATT
70312754 TGAACGAGTA
Statistics
Matches: 122, Mismatches: 14, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
78 32 0.26
79 54 0.44
80 35 0.29
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGACCCGAAGGCATTG
GTACGAGATACTAAA
Found at i:70312788 original size:79 final size:79
Alignment explanation
Indices: 70312532--70312779 Score: 227
Period size: 79 Copynumber: 3.1 Consensus size: 79
70312522 TCGAATGATG
* * * * * *
70312532 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAATCCGGGCTAAG-CCCGAAGGCAT
* * * *
70312595 TTGTACGAGATACTAAT
63 TGGAACGAGTTACTAAA
* * *
70312612 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGG
**
70312676 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
* *
70312690 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AATCCGGGCTAAG-CCCGAAGGCATT
* *
70312754 TGAACGAG-TAGCTATA
64 GGAACGAGTTA-CTAAA
*
70312770 TCCGGTTTAA
1 TCCGGGTTAA
70312780 TTTTGAAGGT
Statistics
Matches: 141, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
78 32 0.23
79 57 0.40
80 51 0.36
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGG
AACGAGTTACTAAA
Found at i:70313406 original size:40 final size:40
Alignment explanation
Indices: 70313131--70313393 Score: 382
Period size: 40 Copynumber: 6.6 Consensus size: 40
70313121 CTCGACGATG
* *
70313131 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
70313171 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* *
70313211 ATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* * *
70313251 ATCCGGGCTAAATCCCAAAGAGCATTCGTGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
** * *
70313291 ATCCGAACTAAGTTCTGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
* * * *
70313331 ATCCGTGCTAAGTTCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
*
70313371 ATCCGGGCTAGGTCCCGAAGAGC
1 ATCCGGGCTAAGTCCCGAAGAGC
70313394 GATCATACTG
Statistics
Matches: 199, Mismatches: 24, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 199 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATAT
Found at i:70316894 original size:47 final size:47
Alignment explanation
Indices: 70316836--70317273 Score: 655
Period size: 47 Copynumber: 9.3 Consensus size: 47
70316826 TGTACAAGTA
* * *
70316836 TATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAGCATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
70316883 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
70316930 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
70316977 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
70317024 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
70317071 TGTATGTGTAATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
70317118 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
70317165 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
70317212 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
70317259 TATAAATGTGATAAG
1 TATATATGTGATAAG
70317274 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 32, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 1 0.00
47 353 0.99
48 3 0.01
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.26
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:70317151 original size:22 final size:22
Alignment explanation
Indices: 70317124--70317245 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
70317114 CATGTGTATG
70317124 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
70317146 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
70317171 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
70317193 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
70317218 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
70317240 TGTGAT
1 TGTGAT
70317246 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:70333056 original size:46 final size:46
Alignment explanation
Indices: 70332967--70333140 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
70332957 GGAGTCAAGT
* * *
70332967 GTCGATGCCATGTCCCAGACATGGTCTCACACTGAC-ACATCTCGTA-
1 GTCGATGCCATGTCCCAGACAT-GTCTTACACTGGCAACGTCTCG-AG
70333013 GTCGATG-CATGTCCCAGACATGTCTTACACTGGCTAACGTCTCGAG
1 GTCGATGCCATGTCCCAGACATGTCTTACACTGGC-AACGTCTCGAG
* * * * * * * * *
70333059 GCCGAAG-TATGTCCTATACATGTCTTACACTAGCACTCGTCTCAAT
1 GTCGATGCCATGTCCCAGACATGTCTTACACTGGCA-ACGTCTCGAG
70333105 GTCGATGCCATGTCCCAGACATGATCTTACACTGGC
1 GTCGATGCCATGTCCCAGACATG-TCTTACACTGGC
70333141 TCTCATAATG
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
44 11 0.11
45 16 0.15
46 54 0.52
47 12 0.12
48 11 0.11
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
GTCGATGCCATGTCCCAGACATGTCTTACACTGGCAACGTCTCGAG
Found at i:70333156 original size:94 final size:92
Alignment explanation
Indices: 70333013--70333186 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
70333003 ACATCTCGTA
* * *
70333013 GTCGATGCATGTCCCAGACATGTCTTACACTGGCTAACGTCTCGAGGCCGAAGTATGTCCT-ATA
1 GTCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATATCGAGGCCGAAGCATGTCCTGA-A
70333077 CATGTCTTACACTAGCACTCGTCTCAAT
65 CATGTCTTACACTAGCACTCGTCTCAAT
** * *
70333105 GTCGATGCCATGTCCCAGACATGATCTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCTG
1 GTCGATG-CATGTCCCAGACATG-TCTTACACTGGCTAACAT-ATCGAGGCCGAAGCATGTCCTG
70333169 AACATGTCTTACACTAGC
63 AACATGTCTTACACTAGC
70333187 TCACACAAGT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 7 0.10
93 15 0.21
94 47 0.66
95 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (92 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTGGCTAACATATCGAGGCCGAAGCATGTCCTGAAC
ATGTCTTACACTAGCACTCGTCTCAAT
Found at i:70335037 original size:20 final size:20
Alignment explanation
Indices: 70335012--70335052 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
70335002 TCAAAATGCT
*
70335012 AACAGAGACACCGAATTGCA
1 AACAGAGACACCGAAGTGCA
* *
70335032 AACAGAGGCACTGAAGTGCA
1 AACAGAGACACCGAAGTGCA
70335052 A
1 A
70335053 TCTCGTAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (20 bp):
AACAGAGACACCGAAGTGCA
Found at i:70335070 original size:27 final size:27
Alignment explanation
Indices: 70335032--70335086 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
70335022 CCGAATTGCA
*
70335032 AACAGAGGCACTGAAGTGCAATCTCGT
1 AACAGAGGCACTGAAGTGAAATCTCGT
70335059 AACAGAGGCACTGAAGTGAAATCTCGT
1 AACAGAGGCACTGAAGTGAAATCTCGT
70335086 A
1 A
70335087 CAAGTGCGCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.18
Consensus pattern (27 bp):
AACAGAGGCACTGAAGTGAAATCTCGT
Found at i:70338524 original size:37 final size:37
Alignment explanation
Indices: 70338474--70338552 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
70338464 TTATTACGAA
* *
70338474 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
70338511 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
70338548 GTCTT
1 GTCTT
70338553 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:70338734 original size:47 final size:47
Alignment explanation
Indices: 70338671--70339031 Score: 587
Period size: 47 Copynumber: 7.6 Consensus size: 47
70338661 CCCCTCGGGA
* * * * * *
70338671 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70338718 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70338765 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70338812 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70338859 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70338906 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70338953 CTTATCACATATATACACTCTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70339000 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
70339032 TCAAATATAC
Statistics
Matches: 295, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 274 0.93
49 21 0.07
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70347916 original size:5 final size:5
Alignment explanation
Indices: 70347906--70347937 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
70347896 GACACCAACC
*
70347906 ATAAA ATAAA ATAAA ATTAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
70347938 TTTACTTTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (5 bp):
ATAAA
Found at i:70349308 original size:60 final size:61
Alignment explanation
Indices: 70349201--70349344 Score: 238
Period size: 60 Copynumber: 2.4 Consensus size: 61
70349191 ATGTATACAA
* *
70349201 CAGGATTA-CAAGTCCAGGCTAAATCTTGTCTCCAATATATATATACTCAATAGAGCTTAGT
1 CAGGATTACCAA-TCCAGGCTAAAACTTATCTCCAATATATATATACTCAATAGAGCTTAGT
70349262 CAGGATTACCAATCCAGGCTAAAAC-TATCTCCAATATATATATACTCAATAGAGCTTAGT
1 CAGGATTACCAATCCAGGCTAAAACTTATCTCCAATATATATATACTCAATAGAGCTTAGT
*
70349322 CAGGATTACCAGTCCAGGCTAAA
1 CAGGATTACCAATCCAGGCTAAA
70349345 TCCTTTTTAT
Statistics
Matches: 79, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
60 56 0.71
61 20 0.25
62 3 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.28
Consensus pattern (61 bp):
CAGGATTACCAATCCAGGCTAAAACTTATCTCCAATATATATATACTCAATAGAGCTTAGT
Found at i:70352396 original size:19 final size:19
Alignment explanation
Indices: 70352372--70352411 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70352362 TGTGTCATCA
*
70352372 TAAATTCATAGGCATAACT
1 TAAATTCATAGACATAACT
**
70352391 TAAATTTGTAGACATAACT
1 TAAATTCATAGACATAACT
70352410 TA
1 TA
70352412 TACATTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGACATAACT
Found at i:70355491 original size:40 final size:40
Alignment explanation
Indices: 70355409--70355628 Score: 236
Period size: 40 Copynumber: 5.5 Consensus size: 40
70355399 TATTCGAATG
* *
70355409 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
70355449 ATATTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
70355489 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
70355529 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * * **
70355569 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
70355608 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
70355629 ATACTTGGGT
Statistics
Matches: 152, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
37 1 0.01
38 12 0.08
39 16 0.11
40 120 0.79
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:70362974 original size:17 final size:18
Alignment explanation
Indices: 70362952--70362987 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
70362942 ATTATGTTAA
70362952 ATTAAGG-TTGCTAAGCT
1 ATTAAGGTTTGCTAAGCT
70362969 ATTAAGGTTTGCTAAGCT
1 ATTAAGGTTTGCTAAGCT
70362987 A
1 A
70362988 GCTATTAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (18 bp):
ATTAAGGTTTGCTAAGCT
Found at i:70363831 original size:40 final size:40
Alignment explanation
Indices: 70363771--70363954 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
70363761 TATTCGAATG
*
70363771 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
70363811 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
70363851 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
70363891 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
70363931 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
70363955 CTTGTGCGAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 122 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:70363904 original size:80 final size:80
Alignment explanation
Indices: 70363771--70363954 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
70363761 TATTCGAATG
* * *
70363771 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
70363835 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
70363851 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
70363916 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
70363931 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70363955 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 91 0.97
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:70373901 original size:5 final size:5
Alignment explanation
Indices: 70373878--70373943 Score: 55
Period size: 5 Copynumber: 12.6 Consensus size: 5
70373868 TAAGTTTTCA
* *
70373878 AAAAG AAAATT AAAA- AAAAC AAAAT AAAAT AAAAAT AAAAT AAAAAT
1 AAAAT AAAA-T AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT -AAAAT
70373925 AAAA- AAATAGT AAAAT AAA
1 AAAAT AAA-A-T AAAAT AAA
70373944 GGGACTTAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
4 7 0.13
5 27 0.52
6 15 0.29
7 3 0.06
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:70373906 original size:11 final size:11
Alignment explanation
Indices: 70373877--70373943 Score: 68
Period size: 11 Copynumber: 6.3 Consensus size: 11
70373867 ATAAGTTTTC
*
70373877 AAAAAGAAAAT
1 AAAAATAAAAT
*
70373888 TAAAA-AAAA-
1 AAAAATAAAAT
*
70373897 CAAAATAAAAT
1 AAAAATAAAAT
70373908 AAAAATAAAAT
1 AAAAATAAAAT
70373919 AAAAATAAAA-
1 AAAAATAAAAT
*
70373929 AAATAGTAAAAT
1 AAA-AATAAAAT
70373941 AAA
1 AAA
70373944 GGGACTTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
9 4 0.08
10 11 0.23
11 30 0.62
12 3 0.06
ACGTcount: A:0.81, C:0.01, G:0.03, T:0.15
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:70373912 original size:6 final size:6
Alignment explanation
Indices: 70373898--70373929 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
70373888 TAAAAAAAAC
70373898 AAAAT- AAAATA AAAAT- AAAATA AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
70373930 AATAGTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:70373939 original size:16 final size:16
Alignment explanation
Indices: 70373877--70373943 Score: 66
Period size: 16 Copynumber: 4.2 Consensus size: 16
70373867 ATAAGTTTTC
* *
70373877 AAAAAGAAAATTAAA-
1 AAAAATAAAATAAAAT
*
70373892 AAAAACAAAATAAAAT
1 AAAAATAAAATAAAAT
70373908 AAAAATAAAATAAAAAT
1 AAAAATAAAAT-AAAAT
*
70373925 AAAAA-AATAGTAAAAT
1 AAAAATAA-AATAAAAT
70373941 AAA
1 AAA
70373944 GGGACTTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
15 13 0.29
16 20 0.44
17 12 0.27
ACGTcount: A:0.81, C:0.01, G:0.03, T:0.15
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:70375780 original size:5 final size:5
Alignment explanation
Indices: 70375772--70375801 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
70375762 ATGGGAAAGG
70375772 AAGAA AAGAA AAGAA AAGAA AAGAA GAAGA
1 AAGAA AAGAA AAGAA AAGAA AAGAA -AAGA
70375802 GGGAGAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
AAGAA
Found at i:70386906 original size:46 final size:46
Alignment explanation
Indices: 70386839--70387005 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 46
70386829 GCCCATAAGC
70386839 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
* * *
70386885 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-CTC---T
1 GAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCATCCACAAGT
* * * *
70386931 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
* *
70386978 GAACTCGAACTCAACTCAATGAGCTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
70387006 ATGCCTAGTT
Statistics
Matches: 97, Mismatches: 13, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
46 53 0.55
47 27 0.28
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.20
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGT
Found at i:70386953 original size:47 final size:46
Alignment explanation
Indices: 70386884--70387057 Score: 185
Period size: 47 Copynumber: 3.7 Consensus size: 46
70386874 CATCCACAAG
70386884 TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
* * * * ***
70386930 TCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAAG
1 T-GAACTCAGACTCAACTCAACGAGCTCGG--ATGC-CTAGTTACATCTC
*
70386977 TGAACTC-GAACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTC
1 TGAACTCAG-ACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
*
70387023 TTGAACTCAGACTCAACTCAACGAGTTCGGATGCC
1 -TGAACTCAGACTCAACTCAACGAGCTCGGATGCC
70387058 CAAATATCCT
Statistics
Matches: 102, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 29 0.28
47 61 0.60
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (46 bp):
TGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
Found at i:70386953 original size:93 final size:93
Alignment explanation
Indices: 70386838--70387053 Score: 353
Period size: 93 Copynumber: 2.3 Consensus size: 93
70386828 CGCCCATAAG
* * *
70386838 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCACAAGTGAACTC-AGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCGA-ACTCAACTC
70386902 AACGAGCTCGGATGCCTAGTTACATCTCT
65 AACGAGCTCGGATGCCTAGTTACATCTCT
*
70386931 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCGAACTCAACTCA
*
70386996 ATGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
70387024 TGAACTCAGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGTTCGGA
70387054 TGCCCAAATA
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
93 114 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCGAACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:70395629 original size:93 final size:93
Alignment explanation
Indices: 70395516--70395687 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
70395506 CGCCCATAAG
* *
70395516 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70395581 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
70395609 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70395674 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70395688 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70395684 original size:46 final size:46
Alignment explanation
Indices: 70395509--70395684 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
70395499 TGTAACCCGC
* * *
70395509 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
70395555 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70395605 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70395648 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70395685 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70403099 original size:46 final size:46
Alignment explanation
Indices: 70403032--70403205 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
70403022 ATGTAACCGC
*
70403032 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
70403078 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * *
70403128 -C-TCA-CGAACTCGGACTCAACTCAACGA-TTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
70403170 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
70403206 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 10, Indels: 20
0.78 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 3 0.03
43 2 0.02
44 2 0.02
45 22 0.20
46 44 0.41
47 22 0.20
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:70403197 original size:92 final size:93
Alignment explanation
Indices: 70403039--70403209 Score: 308
Period size: 92 Copynumber: 1.8 Consensus size: 93
70403029 CGCCCATAAG
* *
70403039 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70403104 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
70403132 CGAACTCGGACTCAACTCAACGA-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70403196 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
70403210 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 52 0.69
93 23 0.31
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70405101 original size:13 final size:13
Alignment explanation
Indices: 70405083--70405107 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70405073 AGGTCGTGTG
70405083 AGGGACACGGGCC
1 AGGGACACGGGCC
70405096 AGGGACACGGGC
1 AGGGACACGGGC
70405108 GTGTGTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (13 bp):
AGGGACACGGGCC
Found at i:70407024 original size:40 final size:40
Alignment explanation
Indices: 70406970--70407221 Score: 296
Period size: 40 Copynumber: 6.3 Consensus size: 40
70406960 CTCGCACAAG
* * * * *
70406970 GCCTTCGGGTCTTAGTCCGG-ATATGGTCACTAGCACAGAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAAT
* *
70407010 GCCTTCGGGACTTAGCCCGG-ATATAATAACTTGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTAGCACAAAT
* * * *
70407050 GCCTTCGGGGCTTAGCCCGGAATTTGTAACTCGCACAAAA
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
* *
70407090 GCCTTCGGGACTTAGCCCGAAATTAGTAACTTGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
* *
70407130 GCCTTCGGGACTTAGCCCGGAATTTGTAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
* *
70407170 GCCTTCGGGAC--AGCCCGGAATTAATCACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
*
70407208 GTCTTCGGGACTTA
1 GCCTTCGGGACTTA
70407222 ACCCCGTTAG
Statistics
Matches: 184, Mismatches: 25, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
38 33 0.18
40 149 0.81
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAGTAACTAGCACAAAT
Found at i:70407070 original size:80 final size:81
Alignment explanation
Indices: 70406970--70407221 Score: 336
Period size: 80 Copynumber: 3.2 Consensus size: 81
70406960 CTCGCACAAG
* * * * * *
70406970 GCCTTCGGGTCTTAGTCCGG-ATATGGTCACTAGCACAGATGCCTTCGGGACTTAGCCCGGATA-
1 GCCTTCGGGACTTAGCCCGGAAT-TTGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
70407033 TAATAACTTGCACAAAT
65 TAATAACTTGCACAAAT
* * *
70407050 GCCTTCGGGGCTTAGCCCGGAATTTGTAACTCGCACAAAAGCCTTCGGGACTTAGCCC-GAAATT
1 GCCTTCGGGACTTAGCCCGGAATTTGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATT
*
70407114 AGTAACTTGCACAAAT
66 AATAACTTGCACAAAT
70407130 GCCTTCGGGACTTAGCCCGGAATTTGTAACTCGCACAAATGCCTTCGGGAC--AGCCCGGA-ATT
1 GCCTTCGGGACTTAGCCCGGAATTTGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATT
* *
70407192 AATCACTAGCACAAAT
66 AATAACTTGCACAAAT
*
70407208 GTCTTCGGGACTTA
1 GCCTTCGGGACTTA
70407222 ACCCCGTTAG
Statistics
Matches: 154, Mismatches: 15, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
78 34 0.22
79 5 0.03
80 113 0.73
81 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (81 bp):
GCCTTCGGGACTTAGCCCGGAATTTGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATT
AATAACTTGCACAAAT
Found at i:70416664 original size:26 final size:26
Alignment explanation
Indices: 70416626--70416902 Score: 247
Period size: 26 Copynumber: 10.5 Consensus size: 26
70416616 GATAGATAAT
70416626 GAAAGCCTTTGTGGCGTAATATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* * *
70416652 GGAAGCCATTGTGGTGTAATATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* *
70416678 GAAAGCCTTTGTGGCATAGT-TGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
*
70416703 GAAAGCCTTTGTGGCGTAGTATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* *
70416729 GAAAGCCTTTTTGGCTTAATAT-AGAA
1 GAAAGCCTTTGTGGCGTAATATGA-AA
* *
70416755 GAAAGCCATTGTGGCGTAGTATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* * *
70416781 GAAAGACTTTGTTGCATAATATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAA
* * *
70416807 GCATAGCCTTTGCGGCGCAATATGAAA
1 G-AAAGCCTTTGTGGCGTAATATGAAA
* * * * *
70416834 TAATAACCTTTTTGGCGTAAAATGAACT
1 GAA-AGCCTTTGTGGCGTAATATGAA-A
** *
70416862 GAAAAGCC-TTGTGG-AAAACCATGAAA
1 G-AAAGCCTTTGTGGCGTAA-TATGAAA
70416888 TGAAAGCCTTTGTGG
1 -GAAAGCCTTTGTGG
70416903 TAAATCACAA
Statistics
Matches: 199, Mismatches: 42, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
25 25 0.13
26 115 0.58
27 54 0.27
28 3 0.02
29 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (26 bp):
GAAAGCCTTTGTGGCGTAATATGAAA
Found at i:70416757 original size:77 final size:78
Alignment explanation
Indices: 70416626--70416833 Score: 251
Period size: 77 Copynumber: 2.7 Consensus size: 78
70416616 GATAGATAAT
* * *
70416626 GAAAGCCTTTGTGGCGTAATATGAAAGGAAGCCATTGTGGTGTAATATGAAAGAAAGCCTTTGTG
1 GAAAGCCTTTGTGGCGTAATATGAAAGAAAGCCTTTGTGGTGTAATATGAAAGAAAGCCATTGTG
70416691 GCATAGT-TGAAA
66 GCATAGTATGAAA
* *
70416703 GAAAGCCTTTGTGGCGTAGTATGAAAGAAAGCCTTTTTGGCT-TAATAT-AGAAGAAAGCCATTG
1 GAAAGCCTTTGTGGCGTAATATGAAAGAAAGCCTTTGTGG-TGTAATATGA-AAGAAAGCCATTG
*
70416766 TGGCGTAGTATGAAA
64 TGGCATAGTATGAAA
* * * * * * *
70416781 GAAAGACTTTGTTGCATAATATGAAAGCATAGCCTTTGCGGCGCAATATGAAA
1 GAAAGCCTTTGTGGCGTAATATGAAAG-AAAGCCTTTGTGGTGTAATATGAAA
70416834 TAATAACCTT
Statistics
Matches: 110, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
76 1 0.01
77 62 0.56
78 29 0.26
79 17 0.15
80 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.27
Consensus pattern (78 bp):
GAAAGCCTTTGTGGCGTAATATGAAAGAAAGCCTTTGTGGTGTAATATGAAAGAAAGCCATTGTG
GCATAGTATGAAA
Found at i:70417490 original size:26 final size:26
Alignment explanation
Indices: 70417453--70417536 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
70417443 TGATACAAAT
* *
70417453 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70417479 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70417505 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
70417531 TGATAA
1 TGATAA
70417537 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:70420324 original size:26 final size:25
Alignment explanation
Indices: 70420293--70420475 Score: 150
Period size: 26 Copynumber: 7.1 Consensus size: 25
70420283 CAATAATGAA
*
70420293 AAGCCTTTGTAGTGTAATATGAAATG
1 AAGCCTTTGTAGCGTAATATGAAA-G
*
70420319 AAGCCTTTGTGGCGTAATATGAAAG
1 AAGCCTTTGTAGCGTAATATGAAAG
* * *
70420344 AAGGCCTTTGTGGCATAGTATGAAAG
1 AA-GCCTTTGTAGCGTAATATGAAAG
* * * *
70420370 AAAACATTTGTGGCGTAATATGGAAG
1 -AAGCCTTTGTAGCGTAATATGAAAG
* * *
70420396 AAAGCCTTTGTGGCATAGTATGAAAG
1 -AAGCCTTTGTAGCGTAATATGAAAG
* *
70420422 AAAGCCTTTGTGGCGTAATATAAAAG
1 -AAGCCTTTGTAGCGTAATATGAAAG
* * **
70420448 AAAGCATTTGTGGCACAATATGAAAG
1 -AAGCCTTTGTAGCGTAATATGAAAG
70420474 AA
1 AA
70420476 TATCCTTTAT
Statistics
Matches: 134, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
25 5 0.04
26 127 0.95
27 2 0.01
ACGTcount: A:0.37, C:0.10, G:0.26, T:0.27
Consensus pattern (25 bp):
AAGCCTTTGTAGCGTAATATGAAAG
Found at i:70420366 original size:52 final size:52
Alignment explanation
Indices: 70420292--70420541 Score: 250
Period size: 52 Copynumber: 4.8 Consensus size: 52
70420282 CCAATAATGA
* ** *
70420292 AAAGCCTTTGTAGTGTAATATGAAATG-AAGCCTTTGTGGCGTAATATGAAAG
1 AAAGCCTTTGTGGCATAGTATGAAA-GAAAGCCTTTGTGGCGTAATATGAAAG
* * * *
70420344 AAGGCCTTTGTGGCATAGTATGAAAGAAAACATTTGTGGCGTAATATGGAAG
1 AAAGCCTTTGTGGCATAGTATGAAAGAAAGCCTTTGTGGCGTAATATGAAAG
*
70420396 AAAGCCTTTGTGGCATAGTATGAAAGAAAGCCTTTGTGGCGTAATATAAAAG
1 AAAGCCTTTGTGGCATAGTATGAAAGAAAGCCTTTGTGGCGTAATATGAAAG
* * * * * * * *
70420448 AAAGCATTTGTGGCACAATATGAAAGAATATCCTTTATGGTGTAAAATGAATTG
1 AAAGCCTTTGTGGCATAGTATGAAAGAA-AGCCTTTGTGGCGTAATATGAA-AG
* * * ** *
70420502 AAAGGCTTTGTGGAAAACCATGAAAATAAAGCCTTTGTGG
1 AAAGCCTTTGTGGCATAGTATG-AAAGAAAGCCTTTGTGG
70420542 TAAATCACAA
Statistics
Matches: 163, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
51 1 0.01
52 114 0.70
53 17 0.10
54 26 0.16
55 5 0.03
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.28
Consensus pattern (52 bp):
AAAGCCTTTGTGGCATAGTATGAAAGAAAGCCTTTGTGGCGTAATATGAAAG
Found at i:70420429 original size:78 final size:78
Alignment explanation
Indices: 70420306--70420475 Score: 234
Period size: 78 Copynumber: 2.2 Consensus size: 78
70420296 CCTTTGTAGT
* * * *
70420306 GTAATATGAAATG-AAGCCTTTGTGGCGTAATATGAAAGAAGGCCTTTGTGGCATAGTATGAAAG
1 GTAATATGAAA-GAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGCATAATATAAAAG
70420370 AAAACATTTGTGGC
65 AAAACATTTGTGGC
* * *
70420384 GTAATATGGAAGAAAGCCTTTGTGGCATAGTATGAAAGAAAGCCTTTGTGGCGTAATATAAAAGA
1 GTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGCATAATATAAAAGA
*
70420449 AAGCATTTGTGGC
66 AAACATTTGTGGC
**
70420462 ACAATATGAAAGAA
1 GTAATATGAAAGAA
70420476 TATCCTTTAT
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
77 1 0.01
78 79 0.99
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.26
Consensus pattern (78 bp):
GTAATATGAAAGAAAGCCTTTGTGGCATAATATGAAAGAAAGCCTTTGTGGCATAATATAAAAGA
AAACATTTGTGGC
Found at i:70424619 original size:15 final size:15
Alignment explanation
Indices: 70424595--70424647 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
70424585 ATATATATAT
*
70424595 TATAATTTCAATCAA
1 TATAAATTCAATCAA
70424610 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* * *
70424625 AATGATTTCAATCAA
1 TATAAATTCAATCAA
70424640 TATAAATT
1 TATAAATT
70424648 TGATAAATTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.49, C:0.11, G:0.02, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:70425512 original size:19 final size:19
Alignment explanation
Indices: 70425488--70425526 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
70425478 AATACTTATT
*
70425488 TATTATTTATACATGTGTA
1 TATTATTAATACATGTGTA
70425507 TATTATTAATACATGTGTA
1 TATTATTAATACATGTGTA
70425526 T
1 T
70425527 CTATTTAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
TATTATTAATACATGTGTA
Found at i:70425534 original size:19 final size:19
Alignment explanation
Indices: 70425491--70425534 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
70425481 ACTTATTTAT
70425491 TATTT-ATACATGTGTATA
1 TATTTAATACATGTGTATA
*
70425509 T-TATTAATACATGTGTATC
1 TAT-TTAATACATGTGTATA
70425528 TATTTAA
1 TATTTAA
70425535 AACCATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 1 0.05
18 3 0.14
19 17 0.77
20 1 0.05
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (19 bp):
TATTTAATACATGTGTATA
Found at i:70431322 original size:29 final size:28
Alignment explanation
Indices: 70431289--70431387 Score: 83
Period size: 29 Copynumber: 3.5 Consensus size: 28
70431279 TAAAACACCT
70431289 AAAGGATAGCCTTTGTGGAAAAACTCTAG
1 AAAGGATAGCCTTTGTGGAAAAACTCT-G
** * *
70431318 AAAGGCA-AGCCTTTGTGGTGAACCTCTT
1 AAAGG-ATAGCCTTTGTGGAAAAACTCTG
* * * *
70431346 AAAGGACAACATTTGTGGCAAAACTCTG
1 AAAGGATAGCCTTTGTGGAAAAACTCTG
*
70431374 AAAGGGTAAGCCTT
1 AAAGGAT-AGCCTT
70431388 CATGGTGAAC
Statistics
Matches: 53, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
27 1 0.02
28 25 0.47
29 26 0.49
30 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.24
Consensus pattern (28 bp):
AAAGGATAGCCTTTGTGGAAAAACTCTG
Found at i:70431372 original size:28 final size:28
Alignment explanation
Indices: 70431300--70431378 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
70431290 AAGGATAGCC
*
70431300 TTTGTGGAAAAACTCTAGAAAGGCAAGCC
1 TTTGTGGAAAAACTCT-GAAAGGCAAGCA
** * *
70431329 TTTGTGGTGAACCTCTTAAAGGACAA-CA
1 TTTGTGGAAAAACTCTGAAAGG-CAAGCA
*
70431357 TTTGTGGCAAAACTCTGAAAGG
1 TTTGTGGAAAAACTCTGAAAGG
70431379 GTAAGCCTTC
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
28 24 0.60
29 16 0.40
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (28 bp):
TTTGTGGAAAAACTCTGAAAGGCAAGCA
Found at i:70438095 original size:57 final size:56
Alignment explanation
Indices: 70438018--70438139 Score: 145
Period size: 57 Copynumber: 2.2 Consensus size: 56
70438008 TAAATGACAA
* * * * ** * *
70438018 CCTTTGTGGTAGAACTCTAGGAATGCAAGCCTTTGTGGTGAACTTGTTAAAGGATAG
1 CCTTTGTGGCAAAACTCTAGGAAGGCAAGCCTTCGTGGCAAACCTCTTAAAGGAT-G
* *
70438075 CCTTTGTGGCAAAACTCTAGGAGGGTAAGCCTTCGTGGCAAACCTCTTAAAGGATG
1 CCTTTGTGGCAAAACTCTAGGAAGGCAAGCCTTCGTGGCAAACCTCTTAAAGGATG
70438131 CCTTTGTGG
1 CCTTTGTGG
70438140 TGAGACTCTA
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
56 10 0.18
57 45 0.82
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (56 bp):
CCTTTGTGGCAAAACTCTAGGAAGGCAAGCCTTCGTGGCAAACCTCTTAAAGGATG
Found at i:70438148 original size:27 final size:28
Alignment explanation
Indices: 70438118--70438198 Score: 74
Period size: 28 Copynumber: 2.8 Consensus size: 28
70438108 CGTGGCAAAC
70438118 CTCTTAAAGGATGCCTTTGTGGTGAG-A
1 CTCTTAAAGGATGCCTTTGTGGTGAGTA
* * * *
70438145 CTCTAAAAGGAAAGTCTTTGTCGTGAGTA
1 CTCTTAAAGG-ATGCCTTTGTGGTGAGTA
*
70438174 CTTAATTGAAAGGATGCCTTTGTGG
1 C-T-CTT-AAAGGATGCCTTTGTGG
70438199 AAATCTCATG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
27 9 0.22
28 13 0.32
29 2 0.05
30 1 0.03
31 10 0.25
32 5 0.12
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.33
Consensus pattern (28 bp):
CTCTTAAAGGATGCCTTTGTGGTGAGTA
Found at i:70441971 original size:28 final size:28
Alignment explanation
Indices: 70441931--70441987 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
70441921 TAGAAATTAA
70441931 CTTACCAATCATATTCATTTAAAGTAGG
1 CTTACCAATCATATTCATTTAAAGTAGG
70441959 CTTACCAATCATATTCATTTAAAGTAGG
1 CTTACCAATCATATTCATTTAAAGTAGG
70441987 C
1 C
70441988 ATACAAACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (28 bp):
CTTACCAATCATATTCATTTAAAGTAGG
Found at i:70443366 original size:61 final size:61
Alignment explanation
Indices: 70443291--70443409 Score: 220
Period size: 61 Copynumber: 2.0 Consensus size: 61
70443281 GTACCAAAAT
* *
70443291 CACTTAAATTTTGATAGACCACATAGTCGTGCCATGAGCCCATGTATGGCACATGGCCTAG
1 CACTTAAATTTTGATAGACCACATAGTCGTGCCATAAGCCCATGTATGGCACACGGCCTAG
70443352 CACTTAAATTTTGATAGACCACATAGTCGTGCCATAAGCCCATGTATGGCACACGGCC
1 CACTTAAATTTTGATAGACCACATAGTCGTGCCATAAGCCCATGTATGGCACACGGCC
70443410 GTGTGCTAGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (61 bp):
CACTTAAATTTTGATAGACCACATAGTCGTGCCATAAGCCCATGTATGGCACACGGCCTAG
Found at i:70447524 original size:26 final size:26
Alignment explanation
Indices: 70447493--70447709 Score: 269
Period size: 26 Copynumber: 8.3 Consensus size: 26
70447483 CAGATAAGGA
*
70447493 AAAGCCTTTGTGGTGTAATATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
*
70447519 AAAGCCTTTGTGGCGTAGTATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
* *
70447545 AAAGCCTTTGTGGCGTAGTATGAAAT
1 AAAGCCTTTGTGGCGTAATATGAAAG
* *
70447571 AAAGCCTTTGTGGTGTAGTATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
70447597 AAAGCCTTTGTGGCGTAATATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
* *
70447623 AAA-CCTTTGTGGTGAAATATGAAAG
1 AAAGCCTTTGTGGCGTAATATGAAAG
*
70447648 AATAGCCTTTGTGGCGTAAAAT-AAATTG
1 AA-AGCCTTTGTGGCGTAATATGAAA--G
* *
70447676 AAAGCCTTTATGGCG-AACCATGAAAAG
1 AAAGCCTTTGTGGCGTAA-TATG-AAAG
70447703 AAAGCCT
1 AAAGCCT
70447710 CTATGGTAAA
Statistics
Matches: 170, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
25 22 0.13
26 106 0.62
27 36 0.21
28 3 0.02
29 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.28
Consensus pattern (26 bp):
AAAGCCTTTGTGGCGTAATATGAAAG
Found at i:70449393 original size:40 final size:40
Alignment explanation
Indices: 70449356--70449519 Score: 242
Period size: 40 Copynumber: 4.1 Consensus size: 40
70449346 GCTACTCGTT
* *
70449356 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
70449396 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
70449436 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
70449476 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
70449516 CAAA
1 CAAA
70449520 CGCATCTTAG
Statistics
Matches: 115, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 3 0.03
40 110 0.96
41 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:70449532 original size:34 final size:34
Alignment explanation
Indices: 70449489--70449553 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
70449479 ATGCCTTCGG
*
70449489 ATCTTAGTCCGGATTTAGTAACTCGTACAAACGC
1 ATCTTAGTCCGAATTTAGTAACTCGTACAAACGC
70449523 ATCTTAGTCCGAATTTAGTAACTCGTACAAA
1 ATCTTAGTCCGAATTTAGTAACTCGTACAAA
70449554 TGCCTTCGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (34 bp):
ATCTTAGTCCGAATTTAGTAACTCGTACAAACGC
Found at i:70449568 original size:74 final size:76
Alignment explanation
Indices: 70449384--70449576 Score: 221
Period size: 80 Copynumber: 2.5 Consensus size: 76
70449374 AGCCCGGTTA
** * *
70449384 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCG
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAACGCCAT--
*
70449448 GGACTTAACCCGGATT
63 -G-CTTAACCCGAATT
* *
70449464 TAGTAACTCACACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGTACAAACG-CAT-CT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAACGCCATGCT
**
70449527 TAGTCCGAATT
66 TAACCCGAATT
* *
70449538 TAGTAACTCGTACAAATGCCTTCGGATCTTAGTTCGGAT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
70449577 ATGGTCACCT
Statistics
Matches: 100, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
74 46 0.46
79 5 0.05
80 49 0.49
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (76 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCACAAACGCCATGCT
TAACCCGAATT
Found at i:70452578 original size:86 final size:86
Alignment explanation
Indices: 70452476--70452644 Score: 302
Period size: 86 Copynumber: 2.0 Consensus size: 86
70452466 TCCTTTTATT
*
70452476 TATCATCTTTTAGCTTAGCTCTCTTGTCTTTTTCTCTAAAGTTCTTTCGGGTTTTGTGTTTTCCT
1 TATCATCTTTTAGCTTAGCTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTGTTTTCCT
70452541 GGTTTTCTTTAGTGTTTTGTC
66 GGTTTTCTTTAGTGTTTTGTC
* **
70452562 TATCATCTTTTAGCTTAGTTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTGTTTTTTT
1 TATCATCTTTTAGCTTAGCTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTGTTTTCCT
70452627 GGTTTTCTTTAGTGTTTT
66 GGTTTTCTTTAGTGTTTT
70452645 AGGTAGGTAG
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.09, C:0.16, G:0.16, T:0.59
Consensus pattern (86 bp):
TATCATCTTTTAGCTTAGCTCTCTTGTCTTCTTCTCTAAAGTTCTTTCGGGTTTTGTGTTTTCCT
GGTTTTCTTTAGTGTTTTGTC
Found at i:70454399 original size:29 final size:29
Alignment explanation
Indices: 70454329--70454400 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
70454319 CACTAAGCCT
* *
70454329 AATCATATTCATATGGCCCATTAGGCCCA
1 AATCACATTTATATGGCCCATTAGGCCCA
* * *
70454358 AATCACCTGTATATGGCTCATTAGGCCCA
1 AATCACATTTATATGGCCCATTAGGCCCA
70454387 AATCACATTTATAT
1 AATCACATTTATAT
70454401 TCATGCTCAC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (29 bp):
AATCACATTTATATGGCCCATTAGGCCCA
Found at i:70462967 original size:29 final size:29
Alignment explanation
Indices: 70462901--70462987 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
70462891 AATTTCACAT
* * *
70462901 ACCTGTATCTGGCCCACTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
**
70462929 ATAT-TCATATGGCCCATTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAGGCCCAAATC
*
70462958 ACCTGTATATGGCCTATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
70462987 A
1 A
70462988 TATTTATATT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
27 1 0.02
28 17 0.35
29 29 0.60
30 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:70462995 original size:29 final size:29
Alignment explanation
Indices: 70462910--70462996 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
70462900 TACCTGTATC
* * *
70462910 TGGCCCACTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
** *
70462938 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
*
70462967 TGGCCTATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCCAAATCATATTTATA
70462996 T
1 T
70462997 TCATTCTCAC
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
28 13 0.27
29 35 0.73
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCATATTTATA
Found at i:70467662 original size:35 final size:35
Alignment explanation
Indices: 70467616--70467685 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
70467606 CAAGCGGTCC
70467616 CTCTACTAGCTCGTTGAAACTAGAAATGAATTGTA
1 CTCTACTAGCTCGTTGAAACTAGAAATGAATTGTA
70467651 CTCTACTAGCTCGTTGAAACTAGAAATGAATTGTA
1 CTCTACTAGCTCGTTGAAACTAGAAATGAATTGTA
70467686 AGAAGAATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (35 bp):
CTCTACTAGCTCGTTGAAACTAGAAATGAATTGTA
Found at i:70469355 original size:26 final size:26
Alignment explanation
Indices: 70469325--70469376 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
70469315 GGTTAAATTG
*
70469325 CATTTTGGCTTTTCTATTTAAAAAAT
1 CATTTCGGCTTTTCTATTTAAAAAAT
70469351 CATTTCGGCTTTTCTATTTAAAAAAT
1 CATTTCGGCTTTTCTATTTAAAAAAT
70469377 GGGTAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.48
Consensus pattern (26 bp):
CATTTCGGCTTTTCTATTTAAAAAAT
Found at i:70475538 original size:13 final size:14
Alignment explanation
Indices: 70475520--70475549 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
70475510 AATCTGTCGA
70475520 TAGGGTTTA-GGTT
1 TAGGGTTTAGGGTT
70475533 TAGGGTTTAGGGTT
1 TAGGGTTTAGGGTT
70475547 TAG
1 TAG
70475550 ATATCCTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (14 bp):
TAGGGTTTAGGGTT
Found at i:70475539 original size:7 final size:7
Alignment explanation
Indices: 70475520--70475549 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
70475510 AATCTGTCGA
70475520 TAGGGTT
1 TAGGGTT
70475527 TA-GGTT
1 TAGGGTT
70475533 TAGGGTT
1 TAGGGTT
70475540 TAGGGTT
1 TAGGGTT
70475547 TAG
1 TAG
70475550 ATATCCTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.43
Consensus pattern (7 bp):
TAGGGTT
Found at i:70482490 original size:50 final size:49
Alignment explanation
Indices: 70482360--70482547 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 49
70482350 AGCCAAAGCT
* ***
70482360 ATCTAGTACGCATAGTAGCCTGCACTTAGTACTACACATACGACCAGCA
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAGCA
* * *
70482409 GTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCA-CA
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAGCA
* * **
70482459 ATCTAATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCATAGTT
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAGCA
* ** **
70482510 TTCGGGTATGCATAGTAGCCTGCACTTAGTACTACACA
1 ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACA
70482548 TGCGACCTCA
Statistics
Matches: 114, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 36 0.32
50 44 0.39
51 34 0.30
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
ATCTAGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAGCA
Found at i:70485115 original size:14 final size:14
Alignment explanation
Indices: 70485098--70485125 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
70485088 TCACGAAAAT
70485098 TTCACAGATATAAA
1 TTCACAGATATAAA
70485112 TTCACAGATATAAA
1 TTCACAGATATAAA
70485126 CACAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
TTCACAGATATAAA
Found at i:70485131 original size:12 final size:13
Alignment explanation
Indices: 70485099--70485131 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
70485089 CACGAAAATT
70485099 TCACAGATATAAA
1 TCACAGATATAAA
70485112 TTCACAGATATAAA
1 -TCACAGATATAAA
70485126 -CACAGA
1 TCACAGA
70485132 AAATAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.32
14 13 0.68
ACGTcount: A:0.52, C:0.18, G:0.09, T:0.21
Consensus pattern (13 bp):
TCACAGATATAAA
Found at i:70485777 original size:17 final size:17
Alignment explanation
Indices: 70485755--70485792 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
70485745 AAAATTCGAG
70485755 TAAATCAATATCTTATA
1 TAAATCAATATCTTATA
70485772 TAAATCAATATCTTATA
1 TAAATCAATATCTTATA
70485789 TAAA
1 TAAA
70485793 ATATTTGTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAATCAATATCTTATA
Found at i:70485944 original size:19 final size:19
Alignment explanation
Indices: 70485920--70485956 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
70485910 AATGTATTGC
*
70485920 AAAGAAAAGAGAGAAAAAT
1 AAAGAAAACAGAGAAAAAT
*
70485939 AAAGAATACAGAGAAAAA
1 AAAGAAAACAGAGAAAAA
70485957 CAACTACAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.73, C:0.03, G:0.19, T:0.05
Consensus pattern (19 bp):
AAAGAAAACAGAGAAAAAT
Found at i:70493981 original size:47 final size:47
Alignment explanation
Indices: 70493924--70494039 Score: 178
Period size: 47 Copynumber: 2.5 Consensus size: 47
70493914 ATGACATGTC
*
70493924 CCAGACATGGTCTTACACTGGCTCAACCATTAAGTCGATGCCATGCA
1 CCAGACATGGTCTTACACTGACTCAACCATTAAGTCGATGCCATGCA
* * **
70493971 CCAGACATGGTCTTACACTGACTCATCCATTAAGTCGATGTCATGTT
1 CCAGACATGGTCTTACACTGACTCAACCATTAAGTCGATGCCATGCA
*
70494018 CTAGACATGGTCTTACACTGAC
1 CCAGACATGGTCTTACACTGAC
70494040 ACATCTTTTA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
CCAGACATGGTCTTACACTGACTCAACCATTAAGTCGATGCCATGCA
Found at i:70501583 original size:47 final size:47
Alignment explanation
Indices: 70501514--70501775 Score: 222
Period size: 47 Copynumber: 5.7 Consensus size: 47
70501504 GGTATAATGC
*
70501514 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATTAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATTAAGT
* *
70501561 CGATGCCATATCCTAGACATGGTCTTACACTGACTCATCCATTAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATTAAGT
* * * *
70501608 TGATGCCATGTCCCAGACATGGTCTTACATTGACACAT-C-TTGTAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATT-AAGT
** * * * * *
70501654 CGATG-CATGTCAAAGAGATAG-CTTACACTGGCTTACATCTCA--AGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-T-CATC-CATTAAGT
* * * *
70501700 CGAT-ACATGTCCCAGACATGGTCTTACACTGGCTCTTAT-AATGTGA-T
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTC--ATCCAT-TAAGT
70501747 CGATG-CATGTCCCAGACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
70501776 AGCACACAAT
Statistics
Matches: 173, Mismatches: 28, Indels: 29
0.75 0.12 0.13
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 39 0.23
47 108 0.62
48 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATTAAGT
Found at i:70504002 original size:22 final size:21
Alignment explanation
Indices: 70503962--70504003 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
70503952 AATATTAAAT
70503962 TTAAAAAAATTAATGAATTTC
1 TTAAAAAAATTAATGAATTTC
70503983 TTAAAAAATCATTAAT-AATTT
1 TTAAAAAA--ATTAATGAATTT
70504004 GAAAAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 5 0.26
23 6 0.32
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (21 bp):
TTAAAAAAATTAATGAATTTC
Found at i:70505408 original size:28 final size:28
Alignment explanation
Indices: 70505377--70505430 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
70505367 ATCTTGGTAA
70505377 CATGT-TGAC-AGCAAATGATATATCAAGT
1 CATGTATGACTAGC-AA-GATATATCAAGT
70505405 CATGTATGACTAGCAAGATATATCAA
1 CATGTATGACTAGCAAGATATATCAA
70505431 TGCACTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 15 0.62
29 6 0.25
30 3 0.12
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (28 bp):
CATGTATGACTAGCAAGATATATCAAGT
Found at i:70505838 original size:69 final size:69
Alignment explanation
Indices: 70505727--70505864 Score: 276
Period size: 69 Copynumber: 2.0 Consensus size: 69
70505717 TCTCTTCAGG
70505727 AGTCCTAACGATATTTAAGTCATCAACATACACAGAAACTATAACAAATCATGATCCAAACCTCT
1 AGTCCTAACGATATTTAAGTCATCAACATACACAGAAACTATAACAAATCATGATCCAAACCTCT
70505792 TTAT
66 TTAT
70505796 AGTCCTAACGATATTTAAGTCATCAACATACACAGAAACTATAACAAATCATGATCCAAACCTCT
1 AGTCCTAACGATATTTAAGTCATCAACATACACAGAAACTATAACAAATCATGATCCAAACCTCT
70505861 TTAT
66 TTAT
70505865 TTAAATGCAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.42, C:0.23, G:0.07, T:0.28
Consensus pattern (69 bp):
AGTCCTAACGATATTTAAGTCATCAACATACACAGAAACTATAACAAATCATGATCCAAACCTCT
TTAT
Found at i:70509890 original size:2 final size:2
Alignment explanation
Indices: 70509883--70509916 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
70509873 AGCATACTTC
70509883 TA TA TA TA TA TA -A TA TA TA TA T- TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
70509917 GGGAGGTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:70509900 original size:11 final size:11
Alignment explanation
Indices: 70509884--70509916 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
70509874 GCATACTTCT
70509884 ATATATATATA
1 ATATATATATA
*
70509895 ATATATATATT
1 ATATATATATA
70509906 ATATATATATA
1 ATATATATATA
70509917 GGGAGGTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
ATATATATATA
Found at i:70510020 original size:7 final size:7
Alignment explanation
Indices: 70510010--70510041 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
70510000 AAAAGTTAAA
70510010 AAAGATG
1 AAAGATG
70510017 AAAGATG
1 AAAGATG
70510024 AAAGATG
1 AAAGATG
70510031 AAAGATG
1 AAAGATG
70510038 AAAG
1 AAAG
70510042 GTTGAACATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.28, T:0.12
Consensus pattern (7 bp):
AAAGATG
Found at i:70513478 original size:15 final size:15
Alignment explanation
Indices: 70513458--70513489 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
70513448 CATTTCACTA
*
70513458 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
70513473 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
70513488 TT
1 TT
70513490 TGCATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:70517081 original size:40 final size:40
Alignment explanation
Indices: 70516997--70517220 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
70516987 TTGAATGATG
* * * *
70516997 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
70517037 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
70517077 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70517115 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70517155 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70517196 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70517221 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70517215 original size:80 final size:80
Alignment explanation
Indices: 70516997--70517220 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
70516987 TTGAATGATG
* * * * *
70516997 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
70517060 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
70517077 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
70517139 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
70517155 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
70517220 G
66 G
70517221 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:70525101 original size:40 final size:40
Alignment explanation
Indices: 70525017--70525240 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
70525007 TTGAATGATG
* * * *
70525017 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
70525057 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
70525097 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70525135 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
70525175 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
70525216 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70525241 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:70525235 original size:80 final size:80
Alignment explanation
Indices: 70525017--70525240 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
70525007 TTGAATGATG
* * * * *
70525017 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
70525080 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
70525097 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
70525159 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
70525175 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
70525240 G
66 G
70525241 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:70527516 original size:43 final size:42
Alignment explanation
Indices: 70527437--70527548 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
70527427 TGAGTTTACG
** *
70527437 TGTAAGACCATATTTGGGATATGGCATCGATATGAGATTTCA
1 TGTAAGACCATAGCTGGGATATGGCATCGATATGAGATTCCA
*
70527479 TGTAAGACCATAGCTGGGCTATTGGCATCGACT-TGAGATTCCA
1 TGTAAGACCATAGCTGGGATA-TGGCATCGA-TATGAGATTCCA
* **
70527522 TGTAGGACCATATTTGGGATATGGCAT
1 TGTAAGACCATAGCTGGGATATGGCAT
70527549 TGGTATGGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 24 0.40
43 35 0.58
44 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGGATATGGCATCGATATGAGATTCCA
Found at i:70527836 original size:29 final size:29
Alignment explanation
Indices: 70527794--70527852 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
70527784 TCATTTATGC
70527794 CAAGTTTGATTATGAGATTTACAATGATA
1 CAAGTTTGATTATGAGATTTACAATGATA
70527823 CAAGTTTGATTATGAGATTTACAATGATA
1 CAAGTTTGATTATGAGATTTACAATGATA
70527852 C
1 C
70527853 CTATGTAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.37
Consensus pattern (29 bp):
CAAGTTTGATTATGAGATTTACAATGATA
Found at i:70529522 original size:17 final size:17
Alignment explanation
Indices: 70529492--70529534 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
70529482 CTGGGTGATT
* *
70529492 TCACACGGCCATGTGG-
1 TCACATGGCTATGTGGC
70529508 TGCACATGGCTATGTGGC
1 T-CACATGGCTATGTGGC
70529526 TCACATGGC
1 TCACATGGC
70529535 CTAGCATATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (17 bp):
TCACATGGCTATGTGGC
Done.