Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 208 of 345
Found at i:70532184 original size:49 final size:49
Alignment explanation
Indices: 70532112--70532211 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
70532102 TTAGCTATAC
70532112 ATGCCATTATATATAATTGTGATAGTGTGATATCTCCTAACCATTTTAA
1 ATGCCATTATATATAATTGTGATAGTGTGATATCTCCTAACCATTTTAA
70532161 ATGCCATTATATATAATTGTGATAGTGTGATATCTCCTAACCATTTTAA
1 ATGCCATTATATATAATTGTGATAGTGTGATATCTCCTAACCATTTTAA
70532210 AT
1 AT
70532212 ATGTTTTTCA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (49 bp):
ATGCCATTATATATAATTGTGATAGTGTGATATCTCCTAACCATTTTAA
Found at i:70540510 original size:27 final size:27
Alignment explanation
Indices: 70540480--70540657 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70540470 ATATTGAGTC
* * * *
70540480 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70540507 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70540534 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70540562 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70540589 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70540616 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70540643 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70540658 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70540619 original size:82 final size:81
Alignment explanation
Indices: 70540501--70540656 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70540491 TGCTATATAA
* *
70540501 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70540566 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70540583 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70540647 CACTTAGTGC
65 CACTTAGTGC
70540657 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70548189 original size:27 final size:27
Alignment explanation
Indices: 70548159--70548336 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70548149 ATATTGAGTC
* * * *
70548159 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70548186 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70548213 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70548241 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70548268 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70548295 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70548322 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70548337 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70548298 original size:82 final size:81
Alignment explanation
Indices: 70548180--70548335 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70548170 TGCTATATAA
* *
70548180 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70548245 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70548262 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70548326 CACTTAGTGC
65 CACTTAGTGC
70548336 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70551429 original size:51 final size:53
Alignment explanation
Indices: 70551373--70551497 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 53
70551363 TATGTCTCAA
70551373 ACCGTGTAACTCACTGA-TT-TGGA-CAC-GGTCGTGTCGCAGGCCT-TGTGCCAG
1 ACCGTGTAACTCACTGACTTAT-GACCACAGGT-GTGTCGCAGG-CTGTGTGCCAG
*
70551424 ACCGTGTAACTCACTGACTTATGACGCACAGGTGTGTCGCAGGCTGTGTGCTAG
1 ACCGTGTAACTCACTGACTTATGAC-CACAGGTGTGTCGCAGGCTGTGTGCCAG
* * *
70551478 GCCGTGTAACACACTAACTT
1 ACCGTGTAACTCACTGACTT
70551498 GATACACACG
Statistics
Matches: 64, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
51 17 0.27
52 4 0.06
53 3 0.05
54 37 0.58
55 3 0.05
ACGTcount: A:0.21, C:0.26, G:0.27, T:0.26
Consensus pattern (53 bp):
ACCGTGTAACTCACTGACTTATGACCACAGGTGTGTCGCAGGCTGTGTGCCAG
Found at i:70553686 original size:64 final size:64
Alignment explanation
Indices: 70553612--70553741 Score: 226
Period size: 64 Copynumber: 2.0 Consensus size: 64
70553602 CGATATTTGA
*
70553612 TAGGTGTTAAAAATAAT-TTTATTTTAGTCACATTTTTAATGCGTTTCTGGGTGATTATTCGATG
1 TAGGTGTTAAAAATAATATTT-TTTTAGTCACATTCTTAATGCGTTTCTGGGTGATTATTCGATG
*
70553676 TAGGTGTTAAAAATAATATTTTTTTAGTCACATTCTTAATGCGTTTTTGGGTGATTATTCGATG
1 TAGGTGTTAAAAATAATATTTTTTTAGTCACATTCTTAATGCGTTTCTGGGTGATTATTCGATG
70553740 TA
1 TA
70553742 AATTGAGAAT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
64 60 0.95
65 3 0.05
ACGTcount: A:0.27, C:0.08, G:0.18, T:0.47
Consensus pattern (64 bp):
TAGGTGTTAAAAATAATATTTTTTTAGTCACATTCTTAATGCGTTTCTGGGTGATTATTCGATG
Found at i:70561017 original size:171 final size:171
Alignment explanation
Indices: 70560732--70561076 Score: 672
Period size: 171 Copynumber: 2.0 Consensus size: 171
70560722 AGATCTATTG
70560732 TGACAACCAATCTGCTGTTGCAATTGCAAAGAATCCAGTTTTTCATGGTAGGACAAAACATTTCA
1 TGACAACCAATCTGCTGTTGCAATTGCAAAGAATCCAGTTTTTCATGGTAGGACAAAACATTTCA
70560797 GCATTAAGCTTCATGTTATGAGAGAAATGGAGCAAGCACATGAGGTGAAACTGATTCATTGCAGT
66 GCATTAAGCTTCATGTTATGAGAGAAATGGAGCAAGCACATGAGGTGAAACTGATTCATTGCAGT
* *
70560862 TGTAACACCCCTAACCTGTATCCGTCGTTGAATTAGGGTTT
131 TGTAACACCCCTAACCTGTATCCGTCGCTGAATTAGGGGTT
70560903 TGACAACCAATCTGCTGTTGCAATTGCAAAGAATCCAGTTTTTCATGGTAGGACAAAACATTTCA
1 TGACAACCAATCTGCTGTTGCAATTGCAAAGAATCCAGTTTTTCATGGTAGGACAAAACATTTCA
70560968 GCATTAAGCTTCATGTTATGAGAGAAATGGAGCAAGCACATGAGGTGAAACTGATTCATTGCAGT
66 GCATTAAGCTTCATGTTATGAGAGAAATGGAGCAAGCACATGAGGTGAAACTGATTCATTGCAGT
70561033 TGTAACACCCCTAACCTGTATCCGTCGCTGAATTAGGGGTT
131 TGTAACACCCCTAACCTGTATCCGTCGCTGAATTAGGGGTT
70561074 TGA
1 TGA
70561077 AGTATTACCG
Statistics
Matches: 172, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
171 172 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (171 bp):
TGACAACCAATCTGCTGTTGCAATTGCAAAGAATCCAGTTTTTCATGGTAGGACAAAACATTTCA
GCATTAAGCTTCATGTTATGAGAGAAATGGAGCAAGCACATGAGGTGAAACTGATTCATTGCAGT
TGTAACACCCCTAACCTGTATCCGTCGCTGAATTAGGGGTT
Found at i:70563889 original size:46 final size:46
Alignment explanation
Indices: 70563822--70563917 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
70563812 TTATAACATA
70563822 TATATTACTTATTATTATTTTACCTTTTTAACCTTAGTTAATAAAT
1 TATATTACTTATTATTATTTTACCTTTTTAACCTTAGTTAATAAAT
70563868 TATATTACTTATTATTATTTTACCTTTTTAACCTTAGTTAATAAAT
1 TATATTACTTATTATTATTTTACCTTTTTAACCTTAGTTAATAAAT
70563914 TATA
1 TATA
70563918 AAATCATATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.54
Consensus pattern (46 bp):
TATATTACTTATTATTATTTTACCTTTTTAACCTTAGTTAATAAAT
Found at i:70566675 original size:21 final size:21
Alignment explanation
Indices: 70566651--70566691 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
70566641 TGGCGAAAGA
* *
70566651 CTAATAGGTGGGGGAGGAGGG
1 CTAAAAGGTGAGGGAGGAGGG
*
70566672 CTAAAAGGTGAGGGTGGAGG
1 CTAAAAGGTGAGGGAGGAGG
70566692 TGTAGCGTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.05, G:0.54, T:0.15
Consensus pattern (21 bp):
CTAAAAGGTGAGGGAGGAGGG
Found at i:70572094 original size:12 final size:12
Alignment explanation
Indices: 70572077--70572102 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70572067 GAGGAGATAG
70572077 GAGAGAATTAAA
1 GAGAGAATTAAA
70572089 GAGAGAATTAAA
1 GAGAGAATTAAA
70572101 GA
1 GA
70572103 AAGAGCTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.15
Consensus pattern (12 bp):
GAGAGAATTAAA
Found at i:70574018 original size:46 final size:46
Alignment explanation
Indices: 70573968--70574140 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
70573958 TGGTTGAGCA
70573968 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
70574014 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
70574059 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
70574107 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70574141 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:70574124 original size:93 final size:93
Alignment explanation
Indices: 70573965--70574135 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
70573955 GGATGGTTGA
* *
70573965 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70574030 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
70574058 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
70574123 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
70574136 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70581537 original size:46 final size:47
Alignment explanation
Indices: 70581487--70581659 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 47
70581477 TGGTTGAGCA
*
70581487 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-TG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACTG
* * *
70581533 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACT--G
* *
70581578 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGACGCAAACT-
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACTG
* *
70581626 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
70581660 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 2 0.02
50 3 0.03
51 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACTG
Found at i:70581643 original size:93 final size:93
Alignment explanation
Indices: 70581484--70581654 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
70581474 GGATGGTTGA
* * * *
70581484 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGACGCAAATGCCCGAACTCGTTGAGT
70581549 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
70581577 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGACGCAAACT-CCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGACGCAAA-TGCCCGAACTCGTTGAG
70581641 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
70581655 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
93 71 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGACGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:70593176 original size:23 final size:22
Alignment explanation
Indices: 70593145--70593187 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
70593135 AGGCTATATA
*
70593145 TTGATTTTTTTTGTCTGTTTTGG
1 TTGAGTTTTTTT-TCTGTTTTGG
*
70593168 TTGAGTTTTTTTTCTTTTTT
1 TTGAGTTTTTTTTCTGTTTT
70593188 TTTCTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.05, C:0.05, G:0.16, T:0.74
Consensus pattern (22 bp):
TTGAGTTTTTTTTCTGTTTTGG
Found at i:70602463 original size:37 final size:37
Alignment explanation
Indices: 70602378--70602483 Score: 146
Period size: 39 Copynumber: 2.9 Consensus size: 37
70602368 ATGGGTAAAA
** *
70602378 AATCTCGTTTCTAAATTTATTTGTTGATATTTTATTTTT
1 AATCTCGTTTCTAAATTTA-TTGTAAATATTTT-GTTTT
70602417 AATCTCGTTTCTAAATTTATTGTAAATATTTTGTTTT
1 AATCTCGTTTCTAAATTTATTGTAAATATTTTGTTTT
70602454 AATCTCGTTTCT-AATTTA-T-TAAATATTTTG
1 AATCTCGTTTCTAAATTTATTGTAAATATTTTG
70602484 AAACACCGTC
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
34 11 0.17
35 1 0.02
36 6 0.09
37 16 0.25
38 11 0.17
39 19 0.30
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.58
Consensus pattern (37 bp):
AATCTCGTTTCTAAATTTATTGTAAATATTTTGTTTT
Found at i:70608090 original size:46 final size:46
Alignment explanation
Indices: 70608023--70608151 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 46
70608013 TGTAACCCGC
* * *
70608023 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCAT
*
70608069 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
70608115 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
70608152 TGCCCAAATA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
45 2 0.03
46 76 0.97
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:70613677 original size:6 final size:6
Alignment explanation
Indices: 70613662--70613738 Score: 65
Period size: 6 Copynumber: 13.5 Consensus size: 6
70613652 ATAAGTTTAA
* * *
70613662 AAAAAT -AAAAT AAAAAT --AAAT AACAAT AAAAAT AAAAGT ACAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* *
70613707 AAAAGT AAAAAT --AAAT AAAATAT AAAACT AAA
1 AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAA
70613739 TAAAGTCACT
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
4 8 0.14
5 5 0.09
6 37 0.66
7 6 0.11
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:70613691 original size:16 final size:15
Alignment explanation
Indices: 70613660--70613732 Score: 67
Period size: 16 Copynumber: 4.5 Consensus size: 15
70613650 ATATAAGTTT
70613660 AAAA-AAATAAAATA
1 AAAATAAATAAAATA
70613674 AAAATAAATAACAATA
1 AAAATAAATAA-AATA
70613690 AAAATAAAAGTACAAATA
1 AAAAT-AAA-TA-AAATA
* *
70613708 AAAGTAAAAATAAATA
1 AAAATAAATA-AAATA
70613724 AAATATAAA
1 AAA-ATAAA
70613733 ACTAAATAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
14 4 0.08
15 6 0.12
16 18 0.37
17 10 0.20
18 10 0.20
19 1 0.02
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.18
Consensus pattern (15 bp):
AAAATAAATAAAATA
Found at i:70613704 original size:17 final size:15
Alignment explanation
Indices: 70613663--70613742 Score: 63
Period size: 16 Copynumber: 4.8 Consensus size: 15
70613653 TAAGTTTAAA
70613663 AAAATAAAATAAAAAT
1 AAAAT-AAATAAAAAT
70613679 -AAATAACAATAAAAAT
1 AAAAT-A-AATAAAAAT
*
70613695 AAAAGTACAAATAAAAGT
1 AAAA-T--AAATAAAAAT
70613713 AAAAATAAATAAAATAT
1 -AAAATAAATAAAA-AT
70613730 AAAACTAAATAAA
1 AAAA-TAAATAAA
70613743 GTCACTGATT
Statistics
Matches: 54, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
15 6 0.11
16 21 0.39
17 12 0.22
18 10 0.19
19 5 0.09
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAATAAATAAAAAT
Found at i:70622221 original size:35 final size:34
Alignment explanation
Indices: 70622155--70622221 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 34
70622145 TCCTTCTCTA
* * *
70622155 TTTTTCCTTCCCCTTTCTTTTCCTTTTCTCTTAT
1 TTTTTCCTTCCCCTCTCTGTTCCTTTCCTCTTAT
70622189 TTTTTCCTTCTCCCTCTCTGTTCCTTTCCTCTT
1 TTTTTCCTTC-CCCTCTCTGTTCCTTTCCTCTT
70622222 TTCCCCTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 10 0.34
35 19 0.66
ACGTcount: A:0.01, C:0.36, G:0.01, T:0.61
Consensus pattern (34 bp):
TTTTTCCTTCCCCTCTCTGTTCCTTTCCTCTTAT
Found at i:70623947 original size:30 final size:30
Alignment explanation
Indices: 70623911--70624004 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
70623901 CCAAAGATGT
70623911 AAATGTGTGGAGAAATAAGAAAATAATGGA
1 AAATGTGTGGAGAAATAAGAAAATAATGGA
* * ** *
70623941 AAA--TGTGGACTACCATAAG--AAGGAT-GT
1 AAATGTGTGGA-GA-AATAAGAAAATAATGGA
*
70623968 AAATGTGTGGAGAAATAAGAAAATAATGAA
1 AAATGTGTGGAGAAATAAGAAAATAATGGA
70623998 AAATGTG
1 AAATGTG
70624005 GACTACCATA
Statistics
Matches: 46, Mismatches: 11, Indels: 14
0.65 0.15 0.20
Matches are distributed among these distances:
27 9 0.20
28 11 0.24
29 11 0.24
30 15 0.33
ACGTcount: A:0.50, C:0.03, G:0.26, T:0.21
Consensus pattern (30 bp):
AAATGTGTGGAGAAATAAGAAAATAATGGA
Found at i:70623969 original size:57 final size:57
Alignment explanation
Indices: 70623906--70624021 Score: 223
Period size: 57 Copynumber: 2.0 Consensus size: 57
70623896 TTTTGCCAAA
*
70623906 GATGTAAATGTGTGGAGAAATAAGAAAATAATGGAAAATGTGGACTACCATAAGAAG
1 GATGTAAATGTGTGGAGAAATAAGAAAATAATGAAAAATGTGGACTACCATAAGAAG
70623963 GATGTAAATGTGTGGAGAAATAAGAAAATAATGAAAAATGTGGACTACCATAAGAAG
1 GATGTAAATGTGTGGAGAAATAAGAAAATAATGAAAAATGTGGACTACCATAAGAAG
70624020 GA
1 GA
70624022 AAAGTGTTCG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.48, C:0.05, G:0.26, T:0.21
Consensus pattern (57 bp):
GATGTAAATGTGTGGAGAAATAAGAAAATAATGAAAAATGTGGACTACCATAAGAAG
Found at i:70623985 original size:27 final size:27
Alignment explanation
Indices: 70623906--70623988 Score: 69
Period size: 28 Copynumber: 3.0 Consensus size: 27
70623896 TTTTGCCAAA
*
70623906 GATGTAAATGTGTGGAGAAATAAGAAAAT
1 GATGTAAATGTGTGGAGAAATAAG--AAG
* * * * *
70623935 AATGGAAA-ATGTGGACTACCATAAGAAG
1 GATGTAAATGTGTGGA-GA-AATAAGAAG
70623963 GATGTAAATGTGTGGAGAAATAAGAA
1 GATGTAAATGTGTGGAGAAATAAGAA
70623989 AATAATGAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 8
0.68 0.19 0.14
Matches are distributed among these distances:
27 7 0.17
28 15 0.38
29 13 0.32
30 5 0.12
ACGTcount: A:0.47, C:0.04, G:0.28, T:0.22
Consensus pattern (27 bp):
GATGTAAATGTGTGGAGAAATAAGAAG
Found at i:70624016 original size:30 final size:30
Alignment explanation
Indices: 70623925--70624018 Score: 88
Period size: 28 Copynumber: 3.2 Consensus size: 30
70623915 GTGTGGAGAA
*
70623925 ATAAGAAAATAATGGAAAATGTGGACTACC
1 ATAAGAAAATAATGAAAAATGTGGACTACC
** ** * *
70623955 ATAAG--AAGGATGTAAATGTGTGGA-GA-A
1 ATAAGAAAATAATG-AAAAATGTGGACTACC
70623982 ATAAGAAAATAATGAAAAATGTGGACTACC
1 ATAAGAAAATAATGAAAAATGTGGACTACC
70624012 ATAAGAA
1 ATAAGAA
70624019 GGAAAAGTGT
Statistics
Matches: 46, Mismatches: 13, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
27 5 0.11
28 15 0.33
29 14 0.30
30 12 0.26
ACGTcount: A:0.51, C:0.06, G:0.22, T:0.20
Consensus pattern (30 bp):
ATAAGAAAATAATGAAAAATGTGGACTACC
Found at i:70634417 original size:18 final size:18
Alignment explanation
Indices: 70634396--70634437 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
70634386 TTTATTTTGA
70634396 TTTTCCTTTTGTTTTCCT
1 TTTTCCTTTTGTTTTCCT
* *
70634414 TTTTCTTTTTTTTTTCCT
1 TTTTCCTTTTGTTTTCCT
*
70634432 ATTTCC
1 TTTTCC
70634438 AGTTTTCATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTTCCTTTTGTTTTCCT
Found at i:70641027 original size:21 final size:21
Alignment explanation
Indices: 70640998--70641038 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
70640988 GAGCATTTGA
70640998 GAGCAAAAAAGGCGA-AAAAAG
1 GAGCAAAAAAGG-GACAAAAAG
*
70641019 GAGCGAAAAAGGGACAAAAA
1 GAGCAAAAAAGGGACAAAAA
70641039 AGCATATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.61, C:0.10, G:0.29, T:0.00
Consensus pattern (21 bp):
GAGCAAAAAAGGGACAAAAAG
Found at i:70641953 original size:23 final size:24
Alignment explanation
Indices: 70641912--70641956 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
70641902 CTCTCATTGG
*
70641912 TTATTATTTGGTTGTTTTCTTAAT
1 TTATTATTTGGTTGATTTCTTAAT
*
70641936 TTATT-TTTTGTTGATTTCTTA
1 TTATTATTTGGTTGATTTCTTA
70641957 GTTAGATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.16, C:0.04, G:0.11, T:0.69
Consensus pattern (24 bp):
TTATTATTTGGTTGATTTCTTAAT
Found at i:70642221 original size:9 final size:9
Alignment explanation
Indices: 70642188--70642242 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
70642178 TAGGAACACT
70642188 TTATTTTTA
1 TTATTTTTA
*
70642197 TTA-ATTTA
1 TTATTTTTA
*
70642205 GCTATTTTTA
1 -TTATTTTTA
70642215 TTATTTTTA
1 TTATTTTTA
70642224 TTTTATTTTTA
1 --TTATTTTTA
70642235 -TATTTTTA
1 TTATTTTTA
70642243 ATTTAATTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
8 12 0.32
9 13 0.34
10 4 0.11
11 9 0.24
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (9 bp):
TTATTTTTA
Found at i:70642247 original size:19 final size:20
Alignment explanation
Indices: 70642207--70642247 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
70642197 TTAATTTAGC
*
70642207 TATTTTTATTATTTTTATTT
1 TATTTTTATTATTTTTAATT
70642227 TATTTTTA-TATTTTTAATT
1 TATTTTTATTATTTTTAATT
70642246 TA
1 TA
70642248 ATTTCTACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (20 bp):
TATTTTTATTATTTTTAATT
Found at i:70642251 original size:20 final size:20
Alignment explanation
Indices: 70642208--70642251 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
70642198 TAATTTAGCT
*
70642208 ATTTTTATTATTTTTATTTT
1 ATTTTTATTATTTTTATTTA
70642228 ATTTTTA-TATTTTTAATTTA
1 ATTTTTATTATTTTT-ATTTA
70642248 ATTT
1 ATTT
70642252 CTACATTCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (20 bp):
ATTTTTATTATTTTTATTTA
Found at i:70645153 original size:14 final size:16
Alignment explanation
Indices: 70645120--70645154 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
70645110 GCAACATAGC
70645120 CGTGTGACACACACGG
1 CGTGTGACACACACGG
70645136 CGTG-GACACACA-GG
1 CGTGTGACACACACGG
70645150 CGTGT
1 CGTGT
70645155 CCCAAGCCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.33
15 8 0.44
16 4 0.22
ACGTcount: A:0.23, C:0.29, G:0.34, T:0.14
Consensus pattern (16 bp):
CGTGTGACACACACGG
Found at i:70645963 original size:20 final size:20
Alignment explanation
Indices: 70645947--70645989 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
70645937 TTATTATTAT
70645947 TTATTTATTTTTCTTATTTC
1 TTATTTATTTTTCTTATTTC
*
70645967 TTATTTATTTTTATT-TTTC
1 TTATTTATTTTTCTTATTTC
70645986 TTAT
1 TTAT
70645990 CTTTTTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (20 bp):
TTATTTATTTTTCTTATTTC
Found at i:70645975 original size:24 final size:24
Alignment explanation
Indices: 70645943--70646001 Score: 77
Period size: 26 Copynumber: 2.4 Consensus size: 24
70645933 AGACTTATTA
70645943 TTATTTATTTATTTTTCTTAT-TT
1 TTATTTATTTATTTTTCTTATCTT
70645966 CTTATTTATTTTTATTTTTCTTATCTT
1 -TTATTTA--TTTATTTTTCTTATCTT
70645993 TT-TTTATTT
1 TTATTTATTT
70646002 TTCCTATTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
23 3 0.09
24 7 0.22
25 4 0.12
26 16 0.50
27 2 0.06
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (24 bp):
TTATTTATTTATTTTTCTTATCTT
Found at i:70645985 original size:19 final size:19
Alignment explanation
Indices: 70645947--70646009 Score: 83
Period size: 19 Copynumber: 3.3 Consensus size: 19
70645937 TTATTATTAT
*
70645947 TTATTTATTTTTCTTATTTC
1 TTATTTATTTTTATT-TTTC
70645967 TTATTTATTTTTATTTTTC
1 TTATTTATTTTTATTTTTC
70645986 TTATCTT-TTTTTATTTTTC
1 TTAT-TTATTTTTATTTTTC
*
70646005 CTATT
1 TTATT
70646010 GTTACTAGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
18 1 0.03
19 23 0.57
20 16 0.40
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (19 bp):
TTATTTATTTTTATTTTTC
Found at i:70646064 original size:21 final size:21
Alignment explanation
Indices: 70646018--70646073 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 21
70646008 TTGTTACTAG
* *
70646018 TTTTATT-TTTTTATTATTAT
1 TTTTATTCTTGTTATGATTAT
**
70646038 GGTTATTCTTGTTATGATTAT
1 TTTTATTCTTGTTATGATTAT
70646059 TTTTATTAC-TGTTAT
1 TTTTATT-CTTGTTAT
70646074 TATTCTTTGC
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 5 0.18
21 22 0.79
22 1 0.04
ACGTcount: A:0.20, C:0.04, G:0.09, T:0.68
Consensus pattern (21 bp):
TTTTATTCTTGTTATGATTAT
Found at i:70646104 original size:15 final size:15
Alignment explanation
Indices: 70646006--70646111 Score: 51
Period size: 15 Copynumber: 7.1 Consensus size: 15
70645996 TTATTTTTCC
*
70646006 TATTGTTACTAGTT-T
1 TATTGTTATTA-TTAT
*
70646021 TATT-TTTTTATTAT
1 TATTGTTATTATTAT
* * *
70646035 TATGGTTATTCTTGT
1 TATTGTTATTATTAT
*
70646050 TA-TGATTATTTTTAT
1 TATTG-TTATTATTAT
* *
70646065 TACTGTTATTATT-C
1 TATTGTTATTATTAT
*
70646079 T-TTGCACTATTATTAT
1 TATTG--TTATTATTAT
70646095 TATTGTTATTGATTAT
1 TATTGTTATT-ATTAT
70646111 T
1 T
70646112 CATATTTTCT
Statistics
Matches: 67, Mismatches: 15, Indels: 17
0.68 0.15 0.17
Matches are distributed among these distances:
13 4 0.06
14 10 0.15
15 41 0.61
16 9 0.13
17 3 0.04
ACGTcount: A:0.22, C:0.06, G:0.09, T:0.63
Consensus pattern (15 bp):
TATTGTTATTATTAT
Found at i:70647463 original size:18 final size:18
Alignment explanation
Indices: 70647442--70647476 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
70647432 TTCAGCTTTA
70647442 TTTTTAATTTTCTTTTTC
1 TTTTTAATTTTCTTTTTC
70647460 TTTTTAATTTTCTTTTT
1 TTTTTAATTTTCTTTTT
70647477 TTAGTTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTAATTTTCTTTTTC
Found at i:70651032 original size:18 final size:18
Alignment explanation
Indices: 70650993--70651034 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
70650983 CACACACAAA
70650993 AAAAGAAAAAGAAGAAAAT
1 AAAA-AAAAAGAAGAAAAT
*
70651012 AAAAAAAAATAA-AAAAGT
1 AAAAAAAAAGAAGAAAA-T
70651030 AAAAA
1 AAAAA
70651035 GACAACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 13 0.62
19 4 0.19
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (18 bp):
AAAAAAAAAGAAGAAAAT
Found at i:70652916 original size:44 final size:42
Alignment explanation
Indices: 70652780--70653014 Score: 114
Period size: 44 Copynumber: 5.4 Consensus size: 42
70652770 GATCTTATCT
*
70652780 CCCTAAGCAGTAGTGGAGCAGATAGAAGACGGTGAGCCTTAACC
1 CCCTAAGCAGTAG-GGAGCAGATA-AAGATGGTGAGCCTTAACC
* * ** * * *
70652824 CCCTAAGCAGTAGGGTAGTAGGCTGAAA-ATTAT-AGATCTTATCT
1 CCCTAAGCAGTAGGG-AGCA-GAT-AAAGATGGTGAG-CCTTAACC
*
70652868 CCCTAAGCAGTAGCGGAGCAAATCAAAGATGGTGAGCCTTAACC
1 CCCTAAGCAGTAG-GGAGCAGAT-AAAGATGGTGAGCCTTAACC
** * * * **** ** * *
70652912 CCCTAAATAGTAGGGTAACAGGCTAAAAATTACAAATCTTATCT
1 CCCTAAGCAGTAGGG-AGCA-GATAAAGATGGTGAGCCTTAACC
* * *
70652956 CCCTAAGCAGTAGCGGAGCAGATCAAAGACGATGAGCCTTTACC
1 CCCTAAGCAGTAG-GGAGCAGAT-AAAGATGGTGAGCCTTAACC
*
70653000 CACTAAGCAGTAGGG
1 CCCTAAGCAGTAGGG
70653015 TAACAGGCTG
Statistics
Matches: 134, Mismatches: 46, Indels: 23
0.66 0.23 0.11
Matches are distributed among these distances:
43 14 0.10
44 108 0.81
45 11 0.08
46 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGAGCAGATAAAGATGGTGAGCCTTAACC
Found at i:70653266 original size:44 final size:42
Alignment explanation
Indices: 70653125--70653365 Score: 132
Period size: 44 Copynumber: 5.5 Consensus size: 42
70653115 AATTACAGAT
* *
70653125 CTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGTGAG
1 CTTAACTCCCTAAGCAGTAG-GGAGCAGATCGAAGATGGTGAG
* * * * *
70653168 CTTTAAC-CCTCTAAGCAGTAGGGTAACAG-GCTAAAAAT--TACAG
1 C-TTAACTCC-CTAAGCAGTAGGG-AGCAGATC-GAAGATGGT-GAG
* *
70653211 ATATCATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAG
1 CT-T-AACTCCCTAAGCAGTAG-GGAGCAGATCGAAGATGGTGAG
* * * * *** *
70653256 CCTTAACTCCCTAACCAGTAGGGTAACAG-GCTGAAAATTACAGAT
1 -CTTAACTCCCTAAGCAGTAGGG-AGCAGATC-GAAGA-TGGTGAG
* * *
70653301 CTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAGACGGTGAG
1 CTTAACTCCCTAAGCAGTAG-GGAGCAGATCGAAGATGGTGAG
*
70653344 CTTAACCCCCTAAGCAGTAGGG
1 CTTAACTCCCTAAGCAGTAGGG
70653366 TAACAGGCTG
Statistics
Matches: 142, Mismatches: 38, Indels: 37
0.65 0.18 0.17
Matches are distributed among these distances:
42 3 0.02
43 32 0.23
44 92 0.65
45 13 0.09
46 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (42 bp):
CTTAACTCCCTAAGCAGTAGGGAGCAGATCGAAGATGGTGAG
Found at i:70653486 original size:88 final size:88
Alignment explanation
Indices: 70652762--70653467 Score: 993
Period size: 88 Copynumber: 8.0 Consensus size: 88
70652752 AACATTGGTG
*
70652762 AATTCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT-AGAAGACGGTGAGCCTTAACCCC
1 AATT-ACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCA-AAGACGGTGAGCCTTAACCCC
** *
70652826 CTAAGCAGTAGGGTAGTAGGCTGAA
64 CTAAGCAGTAGGGTAACAGGCTAAA
* * *
70652851 AATTATAGATCTTATCTCCCTAAGCAGTAGCGGAGCAAATCAAAGATGGTGAGCCTTAACCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCT
**
70652916 AAATAGTAGGGTAACAGGCTAAA
66 AAGCAGTAGGGTAACAGGCTAAA
* * * *
70652939 AATTACAAATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGATGAGCCTTTACCCACT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCT
*
70653004 AAGCAGTAGGGTAACAGGCTGAA
66 AAGCAGTAGGGTAACAGGCTAAA
** * * * ** * * *
70653027 AATTACAGATCTTATCTCCCTAAATAATAGTGGAGCAAATTGAAGATGGTGAGCCTTAACACTCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCT
* *
70653092 AAACAGTAGGGAAACAGGCTAAA
66 AAGCAGTAGGGTAACAGGCTAAA
* * *
70653115 AATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGGTGAGCTTTAACCCTCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCT
70653180 AAGCAGTAGGGTAACAGGCTAAA
66 AAGCAGTAGGGTAACAGGCTAAA
* * * * * *
70653203 AATTACAGATATCATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAGCCTTAACTCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCT
* *
70653268 AACCAGTAGGGTAACAGGCTGAA
66 AAGCAGTAGGGTAACAGGCTAAA
* *
70653291 AATTACAGATCTTATCTCCCTAAGCAGTAGCAGAGCAGATCGAAGACGGTGAG-CTTAACCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCT
*
70653355 AAGCAGTAGGGTAACAGGCTGAA
66 AAGCAGTAGGGTAACAGGCTAAA
* * *
70653378 AATTACAGATCTTATCTCCTTAAGCAGTAGCGGAACATATCAAAGACGGTGAGCCTTAACCCCCT
1 AATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCT
70653443 AAGCAGTAGGGTAACAGGCTAAA
66 AAGCAGTAGGGTAACAGGCTAAA
70653466 AA
1 AA
70653468 CCACAATTCG
Statistics
Matches: 547, Mismatches: 68, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
87 80 0.15
88 462 0.84
89 5 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (88 bp):
AATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGGTGAGCCTTAACCCCCT
AAGCAGTAGGGTAACAGGCTAAA
Found at i:70654460 original size:88 final size:88
Alignment explanation
Indices: 70653468--70654427 Score: 1314
Period size: 88 Copynumber: 10.9 Consensus size: 88
70653458 AGGCTAAAAA
70653468 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
* *
70653533 AATGGCACTGGAGTGGCTTGAAG
66 AATGGCACTGGAGCGGCTCGAAG
* * *
70653556 CCACAATTCGTATCTCCTTGAAG-TTCTAGCGGAGTAGATCAAAGTTACAAATCTCTTCTCCCTT
1 CCACAATTCGTATCTCCTTGAAGTTTC-AGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTG
* *
70653620 AAATGGTACTGGAGCGACTCGAAG
65 AAATGGCACTGGAGCGGCTCGAAG
*
70653644 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
* *
70653709 AATGGCACTAGAGTGGCTCGAAG
66 AATGGCACTGGAGCGGCTCGAAG
* * *
70653732 CCACAATTCGTATCTTCTTGAAG-TTCTAGCAGAGTAGGTCGAAGCTACAAATCTCTTCTCCCTG
1 CCACAATTCGTATCTCCTTGAAGTTTC-AGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTG
* * *
70653796 AAATGACACTGGAGCGACTCAAAG
65 AAATGGCACTGGAGCGGCTCGAAG
* * *
70653820 CCACAATTAGTATCTCCTTGAAATTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTAA
1 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
* *
70653885 AATGGCATTAGAGCGGCTCGAAG
66 AATGGCACTGGAGCGGCTCGAAG
* * * * *
70653908 CTACAATTCGTATCTCCTTGAAGTTTTAGCAGAGTAGATCGAAGTTACAAATCTCTTTTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
*
70653973 AATGGCACTAGAGCGGCTCGAAG
66 AATGGCACTGGAGCGGCTCGAAG
** * *
70653996 CCACAATTTATATCTCCTTGAAG-TTCTAGCGGAGTAGATCGAAGTTACAAATCTCTTCTCCTTG
1 CCACAATTCGTATCTCCTTGAAGTTTC-AGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTG
* *
70654060 AAATTGAACTGGAGCGGCTCGAAG
65 AAATGGCACTGGAGCGGCTCGAAG
* * * * * * *
70654084 CCACAATTTGTATCTCCTTGAAGTTCCAGTGGGGTAGATCGAAGCTACAAATATCTTTTCCCTAA
1 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
* *
70654149 AATGGCACTAGAGCGGCTTGAAG
66 AATGGCACTGGAGCGGCTCGAAG
* ** *
70654172 CCACAATCCGTATCTCCTTGAAGTTTCAGTAGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGA
1 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
* *
70654237 AATGGCACTAGAGCGGCTCAAAG
66 AATGGCACTGGAGCGGCTCGAAG
* ** * *
70654260 CCACAATTCGTATCTCTTTGAAGTTTCAGCAAATTAGATCGAAGCTAAAAATCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
*
70654325 AATGGCACTGGAGCGGGTCGAAG
66 AATGGCACTGGAGCGGCTCGAAG
* * * * * * *
70654348 CTACAATTCTTATCTCCTTAAAGTTTCAGCGGAGGAAATCGAAGATACAAAGCTCTTCTCCCTGA
1 CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
*
70654413 AATGGCATTGGAGCG
66 AATGGCACTGGAGCG
70654428 ATTGAAGCCA
Statistics
Matches: 765, Mismatches: 101, Indels: 12
0.87 0.12 0.01
Matches are distributed among these distances:
87 8 0.01
88 749 0.98
89 8 0.01
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (88 bp):
CCACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGA
AATGGCACTGGAGCGGCTCGAAG
Found at i:70654523 original size:44 final size:45
Alignment explanation
Indices: 70654444--70654554 Score: 138
Period size: 44 Copynumber: 2.5 Consensus size: 45
70654434 GCCACTAAAC
* * * *
70654444 CTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAAGTTA-CGAGT
1 CTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATAGCAAAT
*
70654488 CTTATCTCCCTGAAGTTGTAGTGGAGCAGAG-TGAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGTAGTGGAACAG-GTTGAAGATAGCAAAT
70654533 CTTATC-CCTCTGAAGTTGTAGT
1 CTTATCTCC-CTGAAGTTGTAGT
70654555 AGAGTAGATT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 36 0.61
45 23 0.39
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGTAGTGGAACAGGTTGAAGATAGCAAAT
Found at i:70654707 original size:45 final size:45
Alignment explanation
Indices: 70654621--70654707 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
70654611 ATCTACCTTG
* * *
70654621 ACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATA
1 ACAAATCTTATCTCCCTAAAGTTGCAGTAGAACAGACTGAAGATA
* * * *
70654666 ACAAATCTTATTTCCCTGAAGTTGCATTAGAACAGAGTGAAG
1 ACAAATCTTATCTCCCTAAAGTTGCAGTAGAACAGACTGAAG
70654708 CTATAAATAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.26
Consensus pattern (45 bp):
ACAAATCTTATCTCCCTAAAGTTGCAGTAGAACAGACTGAAGATA
Found at i:70655584 original size:23 final size:23
Alignment explanation
Indices: 70655552--70655595 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
70655542 GTTAATATCA
*
70655552 AAAATTTTATTTGTTTGTTCACG
1 AAAATATTATTTGTTTGTTCACG
70655575 AAAATATTATTTGTTTGTTCA
1 AAAATATTATTTGTTTGTTCA
70655596 TTCTTCATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52
Consensus pattern (23 bp):
AAAATATTATTTGTTTGTTCACG
Found at i:70660422 original size:21 final size:21
Alignment explanation
Indices: 70660398--70660445 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
70660388 CGACTGTGGC
* *
70660398 GGAGGACTAGCAGCTGGGGGT
1 GGAGGACTAACAGCTGAGGGT
*
70660419 GGAGGACTAACAGGTGAGGGT
1 GGAGGACTAACAGCTGAGGGT
70660440 GGAGGA
1 GGAGGA
70660446 TATAAGGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.25, C:0.10, G:0.52, T:0.12
Consensus pattern (21 bp):
GGAGGACTAACAGCTGAGGGT
Found at i:70665457 original size:12 final size:13
Alignment explanation
Indices: 70665440--70665476 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
70665430 GAACCGGACA
70665440 CGAACCGAA-CTC
1 CGAACCGAAGCTC
70665452 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
70665464 CGAACCGTAGCTC
1 CGAACCGAAGCTC
70665477 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:70681547 original size:9 final size:9
Alignment explanation
Indices: 70681529--70681568 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
70681519 AATTAGTCTT
70681529 AATTTTAAA
1 AATTTTAAA
*
70681538 AATTTAAAA
1 AATTTTAAA
70681547 AATTATTAAA
1 AATT-TTAAA
70681557 AATTTTATAA
1 AATTTTA-AA
70681567 AA
1 AA
70681569 AAATATATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
9 15 0.56
10 12 0.44
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTTTAAA
Found at i:70681586 original size:22 final size:20
Alignment explanation
Indices: 70681533--70681589 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 20
70681523 AGTCTTAATT
*
70681533 TTAAAAATT-TAAAAAATTA
1 TTAAAAATTATAAAAAAATA
70681552 TTAAAAATTTTATAAAAAAATA
1 TTAAAAA--TTATAAAAAAATA
70681574 TATACAAAATTATAAA
1 T-TA-AAAATTATAAA
70681590 TATCTATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
19 7 0.22
21 2 0.06
22 17 0.53
23 2 0.06
24 4 0.12
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
TTAAAAATTATAAAAAAATA
Found at i:70681587 original size:12 final size:11
Alignment explanation
Indices: 70681534--70681587 Score: 51
Period size: 12 Copynumber: 5.0 Consensus size: 11
70681524 GTCTTAATTT
70681534 TAAAAATT-TA
1 TAAAAATTATA
70681544 -AAAAATTAT-
1 TAAAAATTATA
*
70681553 TAAAAATTTTA
1 TAAAAATTATA
*
70681564 TAAAAAAATATA
1 T-AAAAATTATA
70681576 TACAAAATTATA
1 TA-AAAATTATA
70681588 AATATCTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 7 0.20
10 9 0.26
11 2 0.06
12 17 0.49
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:70685772 original size:20 final size:21
Alignment explanation
Indices: 70685747--70685786 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
70685737 CTCTTGAAAT
70685747 AGGGC-ACACGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
*
70685767 AGGGCAACACGCCTGTGTGG
1 AGGGCAACACGCCCGTGTGG
70685787 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:70697816 original size:48 final size:47
Alignment explanation
Indices: 70697747--70698027 Score: 269
Period size: 48 Copynumber: 5.9 Consensus size: 47
70697737 GGGTGAATTA
* * *
70697747 CCGAAGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAGG
1 CCGATGCCATG-TCCAGACATGGTCTTACACTGGCTCACATGTCGAGG
* * * * *
70697795 CCGATGCCATGTCCTAGACATGGTTTTACACTAGCT--CTTGACTCAATG
1 CCGATGCCATGTCC-AGACATGGTCTTACACTGGCTCACATG--TCGAGG
* * *
70697843 CCGATGTCATGTTCCAGATATGGTCTTACATTGGCTCACATGTCGAGG
1 CCGATGCCATG-TCCAGACATGGTCTTACACTGGCTCACATGTCGAGG
* * * * * * * *
70697891 CCAATGCCATGTCCCAAACATGGTCTTACACTAGTTCTCATCTCAATG
1 CCGATGCCATGT-CCAGACATGGTCTTACACTGGCTCACATGTCGAGG
* *
70697939 TCGATGCAATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGG
1 CCGATGCCATGT-CCAGACATGGTCTTACACTGGCTCACATGTCGAGG
* *
70697987 CTGATGCCATGTCCTAGACATGGTCTTACACTGGCACACAT
1 CCGATGCCATGTCC-AGACATGGTCTTACACTGGCTCACAT
70698028 ATCACCCAAC
Statistics
Matches: 184, Mismatches: 41, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
46 3 0.02
47 6 0.03
48 169 0.92
49 3 0.02
50 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (47 bp):
CCGATGCCATGTCCAGACATGGTCTTACACTGGCTCACATGTCGAGG
Found at i:70697920 original size:96 final size:95
Alignment explanation
Indices: 70697754--70698018 Score: 379
Period size: 96 Copynumber: 2.8 Consensus size: 95
70697744 TTACCGAAGC
* *
70697754 CATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAGGCCGATGCCATGTCCTAGACATGGT
1 CATGTTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGACATGGT
* *
70697819 TTTACACTAGCTCTTGA-CTCAATGCCGATG
66 CTTACACTAGCTC-TCATCTCAATGCCGATG
* * * * *
70697849 TCATGTTCCAGATATGGTCTTACATTGGCTCACATGTCGAGGCCAATGCCATGTCCCAAACATGG
1 -CATGTTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGACATGG
* *
70697914 TCTTACACTAGTTCTCATCTCAATGTCGATG
65 TCTTACACTAGCTCTCATCTCAATGCCGATG
* *
70697945 CAATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCTGATGCCATGTCCTAGACATGG
1 C-ATGTTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGACATGG
70698010 TCTTACACT
65 TCTTACACT
70698019 GGCACACATA
Statistics
Matches: 149, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
95 3 0.02
96 146 0.98
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (95 bp):
CATGTTCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGACATGGT
CTTACACTAGCTCTCATCTCAATGCCGATG
Found at i:70698012 original size:144 final size:143
Alignment explanation
Indices: 70697752--70698027 Score: 313
Period size: 144 Copynumber: 1.9 Consensus size: 143
70697742 AATTACCGAA
* * * ** * *
70697752 GCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAGGCCGATGCCATGTCCTAGACATG
1 GCCATGTCCCAAACATGGTCTTACACTAGCTCACATCTCAAGGCCGATGCAATGTCCCAGACATG
* * * * * * *
70697817 GTTTTACACTAGCTCTTGACTCAATGCCGATGTCATGTTCCAGATATGGTCTTACATTGGCTCAC
66 GTCTTACACTAGCTCATGA-TCAAGGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCACAC
70697882 ATGTCGAGGCCAAT
130 ATGTCGAGGCCAAT
* * * *
70697896 GCCATGTCCCAAACATGGTCTTACACTAGTTCTCATCTCAATGTCGATGCAATGTCCCAGACATG
1 GCCATGTCCCAAACATGGTCTTACACTAGCTCACATCTCAAGGCCGATGCAATGTCCCAGACATG
* * *
70697961 GTCTTACACTGGCTCACATG-TCGAGGCTGATGCCATG-TCCTAGACATGGTCTTACACTGGCAC
66 GTCTTACACTAGCT--CATGATCAAGGCCGATGCCATGTTCC-AGACATGGTCTTACACTGGCAC
70698024 ACAT
128 ACAT
70698028 ATCACCCAAC
Statistics
Matches: 108, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
143 3 0.03
144 102 0.94
146 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.29
Consensus pattern (143 bp):
GCCATGTCCCAAACATGGTCTTACACTAGCTCACATCTCAAGGCCGATGCAATGTCCCAGACATG
GTCTTACACTAGCTCATGATCAAGGCCGATGCCATGTTCCAGACATGGTCTTACACTGGCACACA
TGTCGAGGCCAAT
Found at i:70706435 original size:149 final size:145
Alignment explanation
Indices: 70706165--70706463 Score: 463
Period size: 149 Copynumber: 2.0 Consensus size: 145
70706155 TTGCCAGACC
* * * *
70706165 CACTCCTAGGGTTTTTTTGTGGTCTACCCCTCGAGGGAGCATTACTCTCACATCTTTTTTCTTGT
1 CACTCCTAGGGTTCTTCTGTGGTCTACCCCTCGAGGGAGCATTACTCTCACATCTTCTCTCTTGT
* *
70706230 CTTTCTCCTCCATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTGAACCACGCTTAAAGCAGCCT
66 CTTTCTCCTCCATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTAAACCACACTTAAAGCAGCCT
*
70706295 CTATCATTACCTTGG
131 CTATCATTACCTTAG
* *
70706310 CACTCCTAGGGTTCTTCTGTGGTCTACCCCTTGAGGGAGCATTACTCACTCTCAGATCTTCTCTC
1 CACTCCTAGGGTTCTTCTGTGGTCTACCCCTCGAGGGAGCA-T--T-ACTCTCACATCTTCTCTC
* *
70706375 TTGTCTTTCTCCTCTATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTAAATCACACTTAAAGCA
62 TTGTCTTTCTCCTCCATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTAAACCACACTTAAAGCA
70706440 GCCTCTATCATTACCTTAG
127 GCCTCTATCATTACCTTAG
70706459 CACTC
1 CACTC
70706464 ACTGAAGTGT
Statistics
Matches: 139, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
145 38 0.27
146 1 0.01
148 1 0.01
149 99 0.71
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (145 bp):
CACTCCTAGGGTTCTTCTGTGGTCTACCCCTCGAGGGAGCATTACTCTCACATCTTCTCTCTTGT
CTTTCTCCTCCATCTCAAGACAGTTTCGAAAAAAGTGGTCTAGTAAACCACACTTAAAGCAGCCT
CTATCATTACCTTAG
Found at i:70718917 original size:48 final size:48
Alignment explanation
Indices: 70718865--70719242 Score: 341
Period size: 48 Copynumber: 7.9 Consensus size: 48
70718855 TGGGTGAATT
** * * *
70718865 GCCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCAAATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
* * * * *
70718913 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
* * *
70718961 GCCGATGCCATGTCCCAGACATGGTCTTACAGTGGCTCACATGTCGAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
* ** * * * *
70719009 GCCAATGTTATGTCCCAGACATGGTCTTACACTAGCTCCCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
* * *
70719057 ACCGATGCCATGTCACAGACATGGCCTTACACTAGCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
* * * * * * *
70719105 GCTGATGCCATATCCCAAACATGGTCTTACACTAGCT-ATCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-CATGTCGAG
* * * * *
70719153 GTC-ATTGCCATGTCCCAGACATAGTCTTACACTGGCTCTCATAAT-GTA-
1 GCCGA-TGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-GTCG-AG
* * * *
70719201 GACGATGCCATGTCCCAGACCTAGTCTTACACTAGCACACAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT
70719243 ATCACCCAAC
Statistics
Matches: 263, Mismatches: 61, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
47 2 0.01
48 258 0.98
49 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATGTCGAG
Found at i:70719028 original size:96 final size:96
Alignment explanation
Indices: 70718864--70719236 Score: 464
Period size: 96 Copynumber: 3.9 Consensus size: 96
70718854 ATGGGTGAAT
** * *
70718864 TGCCGATGCCATGTTTCAAACATGGTCTTACACTGGCTCAAATGTCGAGGCCGATGCCATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
70718929 AGACATGGTCTTACACTAGCTCTCGTCTCAA
66 AGACATGGTCTTACACTAGCTCTCGTCTCAA
* * * **
70718960 TGCCGATGCCATGTCCCAGACATGGTCTTACAGTGGCTCACATGTCGAAGCCAATGTTATGTCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
* *
70719025 AGACATGGTCTTACACTAGCTCCCATCTCAA
66 AGACATGGTCTTACACTAGCTCTCGTCTCAA
* * * * * *
70719056 TACCGATGCCATGTCACAGACATGGCCTTACACTAGCTCACATGTCGAGGCTGATGCCATATCCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
* *
70719121 AAACATGGTCTTACACTAGCTATCGTCTCAA
66 AGACATGGTCTTACACTAGCTCTCGTCTCAA
* * * * *
70719152 TGTC-ATTGCCATGTCCCAGACATAGTCTTACACTGGCTCTCATAAT-GTA-GACGATGCCATGT
1 TGCCGA-TGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCG-AGGCCGATGCCATGT
* *
70719214 CCCAGACCTAGTCTTACACTAGC
63 CCCAGACATGGTCTTACACTAGC
70719237 ACACATATCA
Statistics
Matches: 234, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
95 1 0.00
96 231 0.99
97 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCC
AGACATGGTCTTACACTAGCTCTCGTCTCAA
Found at i:70724484 original size:47 final size:47
Alignment explanation
Indices: 70724426--70724958 Score: 901
Period size: 47 Copynumber: 11.4 Consensus size: 47
70724416 CAGCCAAGAC
*
70724426 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70724473 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70724520 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70724567 AGTG--TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70724612 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70724659 AGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
70724706 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70724753 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
70724800 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
70724847 AGTGTATATATGTG-TAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
70724893 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
70724940 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
70724959 TCCCGAAGGG
Statistics
Matches: 461, Mismatches: 22, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
45 44 0.10
46 46 0.10
47 371 0.80
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:70724682 original size:139 final size:139
Alignment explanation
Indices: 70724432--70724958 Score: 876
Period size: 139 Copynumber: 3.8 Consensus size: 139
70724422 AGACAGTGTA
70724432 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
70724497 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
66 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
70724562 GTGAAAGTG
131 GTGAAAGTG
*
70724571 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
1 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
70724636 ATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
70724701 GTGAAAGTG
131 GTGAAAGTG
70724710 TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATA--TGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
70724775 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGA
64 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
70724840 ATGTGAAAGTG
129 ATGTGAAAGTG
* * *
70724851 TATATATGTG-TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 --TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * *
70724915 GAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
64 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
70724959 TCCCGAAGGG
Statistics
Matches: 365, Mismatches: 19, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
139 140 0.38
140 86 0.24
141 135 0.37
143 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (139 bp):
TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
GTGAAAGTG
Found at i:70724740 original size:186 final size:187
Alignment explanation
Indices: 70724426--70724958 Score: 908
Period size: 186 Copynumber: 2.9 Consensus size: 187
70724416 CAGCCAAGAC
*
70724426 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
70724491 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
*
70724556 ATGAATGTGAAAGTG-TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
131 ATGAATGTGAAAGTGATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
70724612 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
70724677 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
70724742 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
131 ATGAATGTGAAAGTG-ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
70724800 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-TAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * * *
70724864 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
* *
70724929 ATGGATGTGAAAGTGCATAAATGTGATAAG
131 ATGAATGTGAAAGTG-ATATATGTGATAAG
70724959 TCCCGAAGGG
Statistics
Matches: 328, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
186 142 0.43
187 87 0.27
188 99 0.30
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (187 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
ATGAATGTGAAAGTGATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:70725133 original size:37 final size:37
Alignment explanation
Indices: 70725077--70725155 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
70725067 CCGAGCTCTA
* *
70725077 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
70725114 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70725151 AAGAC
1 AAGAC
70725156 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:70729833 original size:56 final size:56
Alignment explanation
Indices: 70729742--70729853 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 56
70729732 AAATTGGACA
* *
70729742 ATCACAGGGAAAGTGAGTAAATGTGAGTTTAAAATAAATTTAGTGCAATATGTATT
1 ATCACAGGGAAAGTGAATAAATGTGAGTTTAAAATAAATTTAGCGCAATATGTATT
* *
70729798 ATCATAGGGAAAGTGAATAAATGTGAGTTTAAAATAAATTTAGCGTAATATGTATT
1 ATCACAGGGAAAGTGAATAAATGTGAGTTTAAAATAAATTTAGCGCAATATGTATT
70729854 GTAAAGTAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (56 bp):
ATCACAGGGAAAGTGAATAAATGTGAGTTTAAAATAAATTTAGCGCAATATGTATT
Found at i:70730899 original size:16 final size:16
Alignment explanation
Indices: 70730880--70730911 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
70730870 TATGGCAACA
70730880 GCTTTCATAGTTACTC
1 GCTTTCATAGTTACTC
70730896 GCTTTCATAGTTACTC
1 GCTTTCATAGTTACTC
70730912 ACGGATTGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44
Consensus pattern (16 bp):
GCTTTCATAGTTACTC
Found at i:70735981 original size:42 final size:42
Alignment explanation
Indices: 70735864--70736037 Score: 167
Period size: 42 Copynumber: 4.2 Consensus size: 42
70735854 ACATAAAATT
* * *
70735864 TGCTAGGC-ATAAAG-CCTAGTATAATACGCTGGCACAGAA-CC
1 TGCTAGGCAATAAAGCCCGA-TATAATACACCGGCACA-AAGCC
* * * * * *
70735905 TGCTACGCAAT-AGGCCTGACATAATACACTGGCATAAAGCC
1 TGCTAGGCAATAAAGCCCGATATAATACACCGGCACAAAGCC
*
70735946 TGCTAGGCAATAAAGCCCGATATAATACACCGGCATAAAGCC
1 TGCTAGGCAATAAAGCCCGATATAATACACCGGCACAAAGCC
** * * *
70735988 TGCTAGGCAATAAAGCCTAATTTAATACACCAGCACAAAGCT
1 TGCTAGGCAATAAAGCCCGATATAATACACCGGCACAAAGCC
70736030 TGCTAGGC
1 TGCTAGGC
70736038 TCAAAGCTCG
Statistics
Matches: 111, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
40 2 0.02
41 35 0.32
42 74 0.67
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.20
Consensus pattern (42 bp):
TGCTAGGCAATAAAGCCCGATATAATACACCGGCACAAAGCC
Found at i:70744718 original size:39 final size:40
Alignment explanation
Indices: 70744620--70744801 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 40
70744610 AATGATGTCT
* * *
70744620 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
* *
70744660 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
70744700 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
70744739 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
70744779 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
70744802 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:70744823 original size:79 final size:79
Alignment explanation
Indices: 70744670--70744834 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
70744660 GGACTAAGAT
* ** *
70744670 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
*
70744735 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
70744749 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-C
* *
70744812 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
70744828 CCGAAGG
1 CCGAAGG
70744835 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:70755944 original size:41 final size:41
Alignment explanation
Indices: 70755843--70755958 Score: 126
Period size: 43 Copynumber: 2.8 Consensus size: 41
70755833 ATCTATTATA
* *
70755843 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCAATTAAGATT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCAATT-AGATT
* * *
70755885 TACGTATAAGACCATGTCTGGGACATCGGCATCGATCT-GATT
1 T-CGTGTAAGACCATGTCTGGGACATAGGCATCAAT-TAGATT
* * *
70755927 TCGTGTAAGACCCTGTCTGGGATAGAGGCATC
1 TCGTGTAAGACCATGTCTGGGACATAGGCATC
70755959 GATATTGAAT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 26 0.42
42 6 0.10
43 29 0.47
44 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATAGGCATCAATTAGATT
Found at i:70755959 original size:41 final size:41
Alignment explanation
Indices: 70755843--70755961 Score: 132
Period size: 41 Copynumber: 2.9 Consensus size: 41
70755833 ATCTATTATA
* * *
70755843 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCAATTAAGATT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCGATT-AGATT
* *
70755885 TACGTATAAGACCATGTCTGGGACATCGGCATCGATCT-GATT
1 T-CGTGTAAGACCATGTCTGGGACATAGGCATCGAT-TAGATT
* * *
70755927 TCGTGTAAGACCCTGTCTGGGATAGAGGCATCGAT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCGAT
70755962 ATTGAATTAC
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
41 29 0.45
42 6 0.09
43 29 0.45
44 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATAGGCATCGATTAGATT
Found at i:70755992 original size:84 final size:83
Alignment explanation
Indices: 70755843--70756000 Score: 192
Period size: 84 Copynumber: 1.9 Consensus size: 83
70755833 ATCTATTATA
* * * * * * *
70755843 TCGTGTAAGACCGTGTCTGGGACATAGGCCTCAATTAAGATTTACGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCAATT-AGAATTACATATAAGACCACGTCCGGGA
70755908 CATCGGCATCGATCTGATT
65 CATCGGCATCGATCTGATT
* *
70755927 TCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATT-GAATTACATATAGGACCACGTCCGGG
1 TCGTGTAAGACCCTGTCTGGGACAGAGGCATC-A-ATTAGAATTACATATAAGACCACGTCCGGG
*
70755991 ACGTCGGCAT
64 ACATCGGCAT
70756001 TGTACTTTTT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
84 58 0.94
85 1 0.02
86 3 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (83 bp):
TCGTGTAAGACCCTGTCTGGGACAGAGGCATCAATTAGAATTACATATAAGACCACGTCCGGGAC
ATCGGCATCGATCTGATT
Found at i:70768968 original size:13 final size:13
Alignment explanation
Indices: 70768950--70768980 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
70768940 ATGTCAATGC
70768950 ACAACTTTAGTGT
1 ACAACTTTAGTGT
70768963 ACAACTTTAGTGT
1 ACAACTTTAGTGT
70768976 -CAACT
1 ACAACT
70768981 AAGAAAATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.28
13 13 0.72
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (13 bp):
ACAACTTTAGTGT
Found at i:70777220 original size:15 final size:16
Alignment explanation
Indices: 70777201--70777244 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
70777191 GTGACTTAGC
70777201 CGTGTGTGACACACG-
1 CGTGTGTGACACACGT
* *
70777216 GGTGTGTGACTCA-GT
1 CGTGTGTGACACACGT
70777231 CGTGTGTGACACAC
1 CGTGTGTGACACAC
70777245 AGCCTGGTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 1 0.04
15 22 0.96
ACGTcount: A:0.18, C:0.23, G:0.34, T:0.25
Consensus pattern (16 bp):
CGTGTGTGACACACGT
Found at i:70777255 original size:30 final size:29
Alignment explanation
Indices: 70777187--70777255 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
70777177 TGAGACATGG
*
70777187 GCCT-GTGACTTAGCCGTGTGTGACACAC
1 GCCTGGTGACTCAGCCGTGTGTGACACAC
** *
70777215 GGGTGTGTGACTCAGTCGTGTGTGACACAC
1 GCCTG-GTGACTCAGCCGTGTGTGACACAC
70777245 AGCCTGGTGAC
1 -GCCTGGTGAC
70777256 ATGGTTGTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
28 2 0.06
30 27 0.84
31 3 0.09
ACGTcount: A:0.17, C:0.25, G:0.33, T:0.25
Consensus pattern (29 bp):
GCCTGGTGACTCAGCCGTGTGTGACACAC
Found at i:70779281 original size:15 final size:15
Alignment explanation
Indices: 70779261--70779290 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70779251 TTCACCTTAA
70779261 ATTCATAAAAAAAGG
1 ATTCATAAAAAAAGG
*
70779276 ATTCATAAATAAAGG
1 ATTCATAAAAAAAGG
70779291 CAATATCCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (15 bp):
ATTCATAAAAAAAGG
Found at i:70783445 original size:46 final size:47
Alignment explanation
Indices: 70783273--70783442 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 47
70783263 AACCCGCCCC
* * **
70783273 TAAGTGAACTCGGACTCAACTCAACGAGCTCTGG-TGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGACATTCGCATCCA
* *
70783319 TAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCAG--GAC-A-TTCGCATCCA
* *
70783367 TCA-CGAACAT-GGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
1 TAAGTGAAC-TCGGACTCAACTCAACGAGTTCAGGACATTCGCATCCA
70783412 TAAGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
70783443 GGATGCTCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 22
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 3 0.03
45 3 0.03
46 56 0.55
47 24 0.24
48 4 0.04
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCAGGACATTCGCATCCA
Found at i:70784907 original size:28 final size:28
Alignment explanation
Indices: 70784871--70784974 Score: 129
Period size: 28 Copynumber: 3.7 Consensus size: 28
70784861 AAATCATTCG
*
70784871 ATATTTCGCACACTAAGTGCCATTCTTA
1 ATATCTCGCACACTAAGTGCCATTCTTA
*
70784899 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATCTCGCACACTAAGTGCCATTCTTA
* * *
70784927 ATATTTCGCACACTAAGTGTCATAT-TTG
1 ATATCTCGCACACTAAGTGCCAT-TCTTA
* *
70784955 ATGTCCCGCACACTAAGTGC
1 ATATCTCGCACACTAAGTGC
70784975 TATACATAGC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 64 0.98
29 1 0.02
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (28 bp):
ATATCTCGCACACTAAGTGCCATTCTTA
Found at i:70785025 original size:40 final size:40
Alignment explanation
Indices: 70784981--70785067 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 40
70784971 GTGCTATACA
* * *
70784981 TAGCCGAAGTTATCTCAAATCGTACACTAAGTGCCAAATT
1 TAGCCGAAGCTATATCAAACCGTACACTAAGTGCCAAATT
* * **
70785021 TAGCCGAAGCTATATCGAACCGTACACTGAGTGCCATGTT
1 TAGCCGAAGCTATATCAAACCGTACACTAAGTGCCAAATT
70785061 TAGCCGA
1 TAGCCGA
70785068 TATGTCATCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (40 bp):
TAGCCGAAGCTATATCAAACCGTACACTAAGTGCCAAATT
Found at i:70790776 original size:24 final size:24
Alignment explanation
Indices: 70790746--70790795 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
70790736 CAAAACACAT
70790746 ATACATAACATAGGCCAAATACAC
1 ATACATAACATAGGCCAAATACAC
70790770 ATACATAACATAGGCCAAATACAC
1 ATACATAACATAGGCCAAATACAC
70790794 AT
1 AT
70790796 TTTATGCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.50, C:0.24, G:0.08, T:0.18
Consensus pattern (24 bp):
ATACATAACATAGGCCAAATACAC
Found at i:70791694 original size:26 final size:26
Alignment explanation
Indices: 70791665--70791749 Score: 71
Period size: 28 Copynumber: 3.1 Consensus size: 26
70791655 CTTATTGAAT
* * * *
70791665 CATTCGATATTTCTCACACTGAGTGC
1 CATTCAATATCTCGCACACTAAGTGC
70791691 CATTCTCAATATCTCGCACACTAAGTGC
1 CA-T-TCAATATCTCGCACACTAAGTGC
* * *
70791719 CATTCTCAATATTTCACACATTAAGTGC
1 CA-T-TCAATATCTCGCACACTAAGTGC
70791747 CAT
1 CAT
70791750 ATTTGATGTC
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 2 0.04
27 2 0.04
28 46 0.92
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.33
Consensus pattern (26 bp):
CATTCAATATCTCGCACACTAAGTGC
Found at i:70791711 original size:28 final size:28
Alignment explanation
Indices: 70791679--70791749 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
70791669 CGATATTTCT
* *
70791679 CACACTGAGTGCCATTCTCAATATCTCG
1 CACACTAAGTGCCATTCTCAATATCTCA
*
70791707 CACACTAAGTGCCATTCTCAATATTTCA
1 CACACTAAGTGCCATTCTCAATATCTCA
*
70791735 CACATTAAGTGCCAT
1 CACACTAAGTGCCAT
70791750 ATTTGATGTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (28 bp):
CACACTAAGTGCCATTCTCAATATCTCA
Found at i:70791825 original size:40 final size:40
Alignment explanation
Indices: 70791781--70791865 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
70791771 GTGTTGTACA
* *
70791781 TAGCCGAAACTAT-CTCAAATCACACACTGAGTGCCAAATT
1 TAGCCGAAACTATAC-CAAACCACACACTAAGTGCCAAATT
* * * *
70791821 TAGCCGAAGCTATACCGAACCGCACACTAAGTGCCATATT
1 TAGCCGAAACTATACCAAACCACACACTAAGTGCCAAATT
70791861 TAGCC
1 TAGCC
70791866 TATATGTCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 37 0.97
41 1 0.03
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.21
Consensus pattern (40 bp):
TAGCCGAAACTATACCAAACCACACACTAAGTGCCAAATT
Found at i:70793791 original size:40 final size:40
Alignment explanation
Indices: 70793731--70793872 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
70793721 TATTCGAATG
*
70793731 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
70793771 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
70793811 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
70793851 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
70793873 TACTTGGGTT
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 14 0.15
40 80 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:70801832 original size:40 final size:40
Alignment explanation
Indices: 70801772--70801913 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
70801762 TATTCGAATG
*
70801772 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
70801812 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
70801852 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
70801892 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
70801914 TACTTGGGTT
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
39 14 0.15
40 80 0.83
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:70815038 original size:47 final size:46
Alignment explanation
Indices: 70814836--70815151 Score: 229
Period size: 47 Copynumber: 6.8 Consensus size: 46
70814826 GGGTTAGGTT
* * * *
70814836 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATGTAC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTAC
* * * *
70814884 GTGCTGATGCATGTCCCAGACATGTCTTACACTAGCA-TTA-CGCTTA-
1 --GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTC-TAC
* * *
70814930 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTAC-CATCATCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCTAC
*** *
70814977 GCCGATGTGGGTCCCAGACATGTCTTATACTGGCACTCATCTCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAC
* * *
70815023 GCTGATGCCATGTCCCAGACATGGTCTTACACAGG--CT-A--TC-AG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTAC
* * * * * *
70815065 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAC
* *
70815111 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCA
70815152 CTGTAACACC
Statistics
Matches: 214, Mismatches: 35, Indels: 36
0.75 0.12 0.13
Matches are distributed among these distances:
40 10 0.05
41 14 0.07
42 10 0.05
43 2 0.01
44 31 0.14
45 5 0.02
46 22 0.10
47 62 0.29
48 38 0.18
49 14 0.07
50 6 0.03
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAC
Found at i:70815091 original size:88 final size:88
Alignment explanation
Indices: 70814987--70815147 Score: 241
Period size: 88 Copynumber: 1.8 Consensus size: 88
70814977 GCCGATGTGG
* * * *
70814987 GTCCCAGACATGTCTTATACTGGCACTCATCTCTACGCTGATGCCATGTCCCAGACATGGTCTTA
1 GTCCCAGACATGTCTTACACTAGCACTCATCTCAACGCCGATGCCATGTCCCAGACATGGTCTTA
70815052 CACAGGCTATCAGGCTGATGCAT
66 CACAGGCTATCAGGCTGATGCAT
* * * *
70815075 GTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGATGCCATGTCCTAGACATGGTCTTA
1 GTCCCAGACATGTCTTACACTAGCACTCATCTCAACGCCGATGCCATGTCCCAGACATGGTCTTA
*
70815140 CACTGGCT
66 CACAGGCT
70815148 CTCACTGTAA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 64 1.00
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (88 bp):
GTCCCAGACATGTCTTACACTAGCACTCATCTCAACGCCGATGCCATGTCCCAGACATGGTCTTA
CACAGGCTATCAGGCTGATGCAT
Found at i:70816050 original size:40 final size:40
Alignment explanation
Indices: 70816006--70816121 Score: 162
Period size: 40 Copynumber: 2.9 Consensus size: 40
70815996 TCGGATATAG
70816006 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
1 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
* * * *
70816046 TACCAGCA-TGAAGCCTACGTGATTTAACCCAGAGATACAT
1 TACCAGCACT-AAGCCTGCGGGATTTAACCCGGATATACAT
* *
70816086 TACAAGCACGAAGCCTGCGGGATTTAACCCGGATAT
1 TACCAGCACTAAGCCTGCGGGATTTAACCCGGATAT
70816122 TTAATATATC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.02
40 63 0.98
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.22
Consensus pattern (40 bp):
TACCAGCACTAAGCCTGCGGGATTTAACCCGGATATACAT
Found at i:70825502 original size:46 final size:48
Alignment explanation
Indices: 70825451--70825581 Score: 166
Period size: 46 Copynumber: 2.8 Consensus size: 48
70825441 ATGGTTGAGC
70825451 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACTAG
* * *
70825498 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTA-G
70825543 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70825582 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACTAG
Found at i:70831429 original size:40 final size:40
Alignment explanation
Indices: 70831353--70831430 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
70831343 ACTTAGTGCC
** *
70831353 ATATATAGCCGAAGCTATTCCAATTTGCACACTAAGTGTT
1 ATATATAGCCGAAGCTATTCCAATACGCACAATAAGTGTT
* *
70831393 ATATATAGCCGAAGCTATTTCGAA-ACGTACAATAAGTG
1 ATATATAGCCGAAGCTA-TTCCAATACGCACAATAAGTG
70831431 CCAAACATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 27 0.84
41 5 0.16
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (40 bp):
ATATATAGCCGAAGCTATTCCAATACGCACAATAAGTGTT
Found at i:70832160 original size:18 final size:18
Alignment explanation
Indices: 70832137--70832172 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
70832127 ATGAAGAACC
70832137 CTAGAATGACTTATTTTT
1 CTAGAATGACTTATTTTT
70832155 CTAGAATGACTTATTTTT
1 CTAGAATGACTTATTTTT
70832173 ATTTCTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
CTAGAATGACTTATTTTT
Found at i:70833716 original size:16 final size:16
Alignment explanation
Indices: 70833695--70833745 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
70833685 AAGAAAGAGC
70833695 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
70833711 AAATACGCTAGTAAAT
1 AAATACGCTAGTAAAT
*
70833727 AAACACGCTAGTAAAT
1 AAATACGCTAGTAAAT
70833743 AAA
1 AAA
70833746 ATACTAGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (16 bp):
AAATACGCTAGTAAAT
Found at i:70834683 original size:16 final size:17
Alignment explanation
Indices: 70834662--70834695 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
70834652 AATTAGAGAA
70834662 TTCTATTTAA-TTCTAT
1 TTCTATTTAATTTCTAT
70834678 TTCTATTTAATTTCTAT
1 TTCTATTTAATTTCTAT
70834695 T
1 T
70834696 AAATCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTATTTAATTTCTAT
Found at i:70835385 original size:15 final size:15
Alignment explanation
Indices: 70835367--70835397 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
70835357 ATAACTAAAG
70835367 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
70835382 AAAAAATAGATAGAT
1 AAAAAATAGATAGAT
70835397 A
1 A
70835398 GATGAGAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAAAAATAGATAGAT
Found at i:70843110 original size:12 final size:11
Alignment explanation
Indices: 70843070--70843109 Score: 53
Period size: 12 Copynumber: 3.4 Consensus size: 11
70843060 ACTATCCAAA
70843070 ATAACCAACAT
1 ATAACCAACAT
70843081 ATAACCATACCAT
1 ATAACCA-A-CAT
70843094 ATAAGCCAACAT
1 ATAA-CCAACAT
70843106 ATAA
1 ATAA
70843110 GGCATTATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 7 0.27
12 8 0.31
13 8 0.31
14 3 0.12
ACGTcount: A:0.53, C:0.25, G:0.03, T:0.20
Consensus pattern (11 bp):
ATAACCAACAT
Found at i:70844573 original size:18 final size:18
Alignment explanation
Indices: 70844550--70844585 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
70844540 ATGAAGAACC
70844550 CTAGAATGACTTATTTTT
1 CTAGAATGACTTATTTTT
70844568 CTAGAATGACTTATTTTT
1 CTAGAATGACTTATTTTT
70844586 ATTTCTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
CTAGAATGACTTATTTTT
Found at i:70846504 original size:69 final size:69
Alignment explanation
Indices: 70846447--70846604 Score: 181
Period size: 69 Copynumber: 2.3 Consensus size: 69
70846437 TTTTTCTTTC
*
70846447 ACTAACTATGTTGGAGGTTGCGACTCTTCGCCTACGAGCCTTAGAATTATAGTTGAGAGCTTTGC
1 ACTAACTATGTTGGAGGCTGCGACTCTTCGCCTACGAGCCTTAGAATTATAGTTGAGAGCTTTGC
70846512 TCTT
66 TCTT
* * * * ** * * * * *
70846516 GCTAACTATGTTGGAGGCTGTGACTCTTTGCCTATGAGCCTTAGTGTGAAAGCTGGGAACTTTGC
1 ACTAACTATGTTGGAGGCTGCGACTCTTCGCCTACGAGCCTTAGAATTATAGTTGAGAGCTTTGC
*
70846581 TCTC
66 TCTT
* *
70846585 ACTAACTGTGTTAGAGGCTG
1 ACTAACTATGTTGGAGGCTG
70846605 GGGCTCTTTT
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.34
Consensus pattern (69 bp):
ACTAACTATGTTGGAGGCTGCGACTCTTCGCCTACGAGCCTTAGAATTATAGTTGAGAGCTTTGC
TCTT
Found at i:70857071 original size:41 final size:41
Alignment explanation
Indices: 70856995--70857090 Score: 131
Period size: 41 Copynumber: 2.3 Consensus size: 41
70856985 TCCTAGATAT
* *
70856995 GGTCTTACATGTTATCATATATTGATGCCACTGTCCCAGACAA
1 GGTCTTACATG--ATCATATATCGATGCCAATGTCCCAGACAA
*
70857038 GGTCTTACATGAGTCATATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACATGA-TCATATATCGATGCCAATGTCCCAGACAA
70857079 GGTCTTACATGA
1 GGTCTTACATGA
70857091 ATTCACACAT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
41 31 0.63
42 7 0.14
43 11 0.22
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (41 bp):
GGTCTTACATGATCATATATCGATGCCAATGTCCCAGACAA
Found at i:70861114 original size:25 final size:25
Alignment explanation
Indices: 70861086--70861138 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
70861076 AACTTCTAAA
70861086 GTAGAATGGGTAGTTAAGAGGGATG
1 GTAGAATGGGTAGTTAAGAGGGATG
70861111 GTAGAATGGGTAGTTAAGAGGGATG
1 GTAGAATGGGTAGTTAAGAGGGATG
70861136 GTA
1 GTA
70861139 CACTCTAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.43, T:0.25
Consensus pattern (25 bp):
GTAGAATGGGTAGTTAAGAGGGATG
Found at i:70871051 original size:46 final size:47
Alignment explanation
Indices: 70870963--70871133 Score: 187
Period size: 46 Copynumber: 3.7 Consensus size: 47
70870953 CTCTATACGT
*
70870963 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GAC--AAATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTTACATCTC-TA
* *
70871009 GCCGATG-CATGTCCCAGACAT-ATCTTACACTAGCTTACATCTCATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTC-TA
* * *
70871055 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATCTCTA
70871100 TGCCGATGCCATGTCCCAGACATGGTCTTACACT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACT
70871134 GGCTCTTATA
Statistics
Matches: 108, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
44 10 0.09
45 15 0.14
46 58 0.54
47 15 0.14
48 10 0.09
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCTA
Found at i:70876978 original size:41 final size:41
Alignment explanation
Indices: 70876933--70877109 Score: 153
Period size: 41 Copynumber: 4.3 Consensus size: 41
70876923 GCACAAACAT
* * * *
70876933 CCTTCGAAATCAAGTCTGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGAAACCAAGTCAGATTATGAGCACTGGCTCAAAAGC
* * * * *
70876974 CCTTCGAGACCAAGCTCGGATTA-GACCACTGGCTCGAAGGC
1 CCTTCGAAACCAAG-TCAGATTATGAGCACTGGCTCAAAAGC
* * * * *
70877015 CCTTCGGAACTAAGTCCGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGAAACCAAGTCAGATTATGAGCACTGGCTCAAAAGC
* * * *
70877055 CCTTCGAAGCTAAATTCAG-TTATTAGCACTGGCTCAAAAGC
1 CCTTCGAAAC-CAAGTCAGATTATGAGCACTGGCTCAAAAGC
70877096 CCTTCGAAACCAAG
1 CCTTCGAAACCAAG
70877110 CTCGGATTTA
Statistics
Matches: 107, Mismatches: 25, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
40 34 0.32
41 67 0.63
42 6 0.06
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (41 bp):
CCTTCGAAACCAAGTCAGATTATGAGCACTGGCTCAAAAGC
Found at i:70884398 original size:46 final size:46
Alignment explanation
Indices: 70884323--70884497 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
70884313 TGTAACCCGC
* * *
70884323 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* * * *
70884369 CCATGAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * *
70884419 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
70884462 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
70884498 ATGCCCAAAC
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 59 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 6 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:70884438 original size:93 final size:93
Alignment explanation
Indices: 70884330--70884502 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
70884320 CGCCCATAAG
* * *
70884330 CGAACTCGAACTCAACTCAACGAGCTCGGGCATTTGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70884395 ACGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
70884423 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
70884488 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
70884503 CAAACATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:70886927 original size:30 final size:30
Alignment explanation
Indices: 70886892--70886971 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 30
70886882 CAAGGAAACT
*
70886892 GAATAAAGAAATCCAAGATAGAGAAATCCA
1 GAATAAAGAAATCCAAGATAAAGAAATCCA
* * *
70886922 GAATAAAG-AATTCTAGAATAAAGAGATCCA
1 GAATAAAGAAATCCAAG-ATAAAGAAATCCA
* *
70886952 GGATAAAGAAACCCAAGATA
1 GAATAAAGAAATCCAAGATA
70886972 TGATACTATG
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
29 6 0.15
30 29 0.73
31 5 0.12
ACGTcount: A:0.55, C:0.12, G:0.17, T:0.15
Consensus pattern (30 bp):
GAATAAAGAAATCCAAGATAAAGAAATCCA
Found at i:70886931 original size:15 final size:15
Alignment explanation
Indices: 70886892--70886962 Score: 81
Period size: 15 Copynumber: 4.7 Consensus size: 15
70886882 CAAGGAAACT
70886892 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
70886907 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
* *
70886922 GAATAAAGAATTCTA
1 GAATAAAGAAATCCA
*
70886937 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
*
70886952 GGATAAAGAAA
1 GAATAAAGAAA
70886963 CCCAAGATAT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
14 1 0.02
15 43 0.96
16 1 0.02
ACGTcount: A:0.56, C:0.10, G:0.18, T:0.15
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:70886971 original size:15 final size:15
Alignment explanation
Indices: 70886894--70886971 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
70886884 AGGAAACTGA
70886894 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
70886909 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
70886923 AATAAAG-AATTCTAG
1 -ATAAAGAAATCCAAG
* *
70886938 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
70886954 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
70886969 ATA
1 ATA
70886972 TGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 6 0.12
15 40 0.80
16 4 0.08
ACGTcount: A:0.55, C:0.13, G:0.17, T:0.15
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:70894214 original size:48 final size:48
Alignment explanation
Indices: 70894159--70894313 Score: 285
Period size: 48 Copynumber: 3.2 Consensus size: 48
70894149 AGATAAATAT
*
70894159 ATATGTATATGTGGTAAAGCTGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
70894207 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
70894255 ATATGTATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
70894303 ATATGTA-ATGT
1 ATATGTATATGT
70894314 ACCTATGTTT
Statistics
Matches: 105, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
47 4 0.04
48 101 0.96
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:70894796 original size:13 final size:12
Alignment explanation
Indices: 70894774--70894804 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
70894764 AACGTTCTTT
70894774 ATAAAAAATAAA
1 ATAAAAAATAAA
70894786 ATAATAAAATAAA
1 ATAA-AAAATAAA
70894799 ATAAAA
1 ATAAAA
70894805 TATTCAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
ATAAAAAATAAA
Found at i:70902652 original size:28 final size:28
Alignment explanation
Indices: 70902620--70902689 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
70902610 AATGAGATTG
70902620 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTCAATAT-TA-A
*
70902648 GCACTAAGTGTGCGAGTTTCACTATTAA
1 GCACTAAGTGTGCGAGTTTCAATATTAA
70902676 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70902690 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTCAATATTAA
Found at i:70908995 original size:28 final size:28
Alignment explanation
Indices: 70908963--70909032 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
70908953 AATGAGATTG
70908963 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTCAATAT-TA-A
*
70908991 GCACTAAGTGTGCGAGTTTCACTATTAA
1 GCACTAAGTGTGCGAGTTTCAATATTAA
70909019 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
70909033 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTCAATATTAA
Found at i:70917384 original size:66 final size:66
Alignment explanation
Indices: 70917299--70917431 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 66
70917289 ACTCGGATCA
* *
70917299 TTTTCATAGCCATAACAGCCCACAATTTCCATTAAAACACACTTTTACTACATATTTTATAACTT
1 TTTTCATAACCATAACAGCCCACAATTTCCATTAAAACACACTTTTACTACATATTCTATAACTT
70917364 T
66 T
* *
70917365 TTTTCATAACTATAACAGCCCACAGTTTCCATTAAAACACACTTTTACTACATATTCTATAACTT
1 TTTTCATAACCATAACAGCCCACAATTTCCATTAAAACACACTTTTACTACATATTCTATAACTT
70917430 T
66 T
70917431 T
1 T
70917432 ACAATTTAGT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (66 bp):
TTTTCATAACCATAACAGCCCACAATTTCCATTAAAACACACTTTTACTACATATTCTATAACTT
T
Found at i:70933203 original size:48 final size:47
Alignment explanation
Indices: 70933101--70933370 Score: 253
Period size: 48 Copynumber: 5.7 Consensus size: 47
70933091 AGATGTAAGC
* * *
70933101 CAGTGTAAGA-CATGTCTGGGACAT-GTATCGGCTACGA-A-ATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ACGATAGAGGTGT
70933145 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGTATAGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACG-ATAGAGGTGT
* *
70933193 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACAC-GATA-GAG-GTGT
* * * * *** *
70933242 CTAGTGTAATACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATC-GACACGATAGAGGT-GT
* ** * * * *
70933292 TAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGATAGAGGTGT
70933339 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
70933371 GTATTATACC
Statistics
Matches: 188, Mismatches: 26, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
44 10 0.05
45 17 0.09
46 7 0.04
47 33 0.18
48 50 0.27
49 35 0.19
50 33 0.18
51 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACACGATAGAGGTGT
Found at i:70933318 original size:99 final size:96
Alignment explanation
Indices: 70933145--70933371 Score: 282
Period size: 99 Copynumber: 2.3 Consensus size: 96
70933135 CGAAATGTGT
* * * * *
70933145 CAGTGTAAGACCATGTCTGGGACATGGCATC-GACACG-TATAGAGGT-GTCAGTGTAAGACCAT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGA--TAGTTAGTGTAAGACCAT
70933207 GTCTGGGACATGGCATCGACACGGATATGTGA-GAGC
64 GTCTGGGACATGGCATCGAC-CGG--ATG-GATGAGC
* * *
70933243 TAGTGTAATACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATAGTTAGTGTAAGACCATGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGATAGTTAGTGTAAGACCATGT
**
70933308 CTGGGACATGGCATCGACTTGATGGATGAGC
66 CTGGGACATGGCATCGACCGGATGGATGAGC
70933339 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
70933372 TATTATACCC
Statistics
Matches: 112, Mismatches: 13, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
95 2 0.02
96 37 0.33
98 30 0.27
99 39 0.35
100 4 0.04
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (96 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGATAGTTAGTGTAAGACCATGT
CTGGGACATGGCATCGACCGGATGGATGAGC
Found at i:70933358 original size:47 final size:47
Alignment explanation
Indices: 70933009--70933370 Score: 230
Period size: 47 Copynumber: 7.7 Consensus size: 47
70932999 TTTGTGTGCT
70933009 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATT-AT-GA-GAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TTGATGGATGAGCC
* * * * * *
70933055 AATGTAATATCATGTCCGGGACAT-GCATCGTCCTCTAGAT-G-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-ACT-T-GATGGATGAGCC
* * * * * *
70933102 AGTGTAAGA-CATGTCTGGGACAT-GTATCGGC-T-ACGAAATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATG-GATGAGCC
** * * * *
70933146 AGTGTAAGACCATGTCTGGGACATGGCATCGACACGTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTG-ATGGATGAGCC
** *
70933194 AGTGTAAGACCATGTCTGGGACATGGCATCGACACGGATATGTGA-GAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTG--ATG-GATGAGCC
* * * * * **
70933244 AGTGTAATACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGAT-AGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGA--TGGATGAGCC
70933293 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
70933340 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
70933371 GTATTATACC
Statistics
Matches: 252, Mismatches: 43, Indels: 41
0.75 0.13 0.12
Matches are distributed among these distances:
41 1 0.00
43 1 0.00
44 13 0.05
45 17 0.07
46 36 0.14
47 65 0.26
48 45 0.18
49 35 0.14
50 35 0.14
51 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGATGAGCC
Found at i:70946024 original size:51 final size:51
Alignment explanation
Indices: 70945859--70946035 Score: 250
Period size: 51 Copynumber: 3.5 Consensus size: 51
70945849 ACTAGTAACT
* * *
70945859 CAAGTGTGGTACTATGTGAAGGCCACTTTGAGAAG-AGATAGCTTAGTC-A
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGACTA
* **
70945908 CAAGTGTGGTACTTTGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGACTA
*
70945960 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGACTA
* *
70946011 CAAGGGTGGTACTATGTGCAGGCCA
1 CAAGTGTGGTACTATGTGAAGGCCA
70946036 TCTGGTATCC
Statistics
Matches: 114, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
49 33 0.29
51 46 0.40
52 35 0.31
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGACTA
Found at i:70952604 original size:50 final size:50
Alignment explanation
Indices: 70952540--70952679 Score: 163
Period size: 51 Copynumber: 2.8 Consensus size: 50
70952530 ACTTACTAAG
* *
70952540 CATAGTAGCTTGCACTTAGTACTACACACGTGACCTCACCATCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCGAATACA
* * * *** * *
70952590 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTCA-CCATCGAATACA
* *
70952641 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTCAC
70952680 AATAGATCAT
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
50 34 0.47
51 39 0.53
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCGAATACA
Found at i:70952665 original size:51 final size:50
Alignment explanation
Indices: 70952539--70952668 Score: 161
Period size: 50 Copynumber: 2.6 Consensus size: 50
70952529 AACTTACTAA
* * *
70952539 GCATAGTAGCTTGCACTTAGTACTACACACGTGACCTCACCATCTAATAC
1 GCATAGTAGCCTGCACTTAGTACTACACACGTGACCACACCATCGAATAC
* * * *** *
70952589 ACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGAGTAC
1 GCATAGTAGCCTGCACTTAGTACTACACACGTGACCACA-CCATCGAATAC
70952640 GCATAGTAGCCTGCACTTAGTACTACACA
1 GCATAGTAGCCTGCACTTAGTACTACACA
70952669 TGCGACCTCA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 34 0.51
51 33 0.49
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
GCATAGTAGCCTGCACTTAGTACTACACACGTGACCACACCATCGAATAC
Found at i:70958246 original size:47 final size:50
Alignment explanation
Indices: 70958177--70958370 Score: 205
Period size: 50 Copynumber: 3.9 Consensus size: 50
70958167 TAGCCGAAGC
* *
70958177 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACA-ATGCGA-C-CAA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
* * * *
70958224 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
* ** * * * *
70958274 CATCTAATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACA-A
* * * *
70958325 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
70958371 TCACAATAGA
Statistics
Matches: 122, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
47 35 0.29
48 4 0.03
49 1 0.01
50 46 0.38
51 36 0.30
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (50 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCACAA
Found at i:70958361 original size:101 final size:97
Alignment explanation
Indices: 70958190--70958374 Score: 253
Period size: 101 Copynumber: 1.9 Consensus size: 97
70958180 CTGGTACGCA
* * *
70958190 TAGTAGCCTGCACTTAGTACTACAATGCGACCAATATCTGGTACACGTAGTAGCCTGCACTTAGT
1 TAGTAGCCTGCACTTAGTACTACAACGCGACCAATATCGGGTACACATAGTAGCCTGCACTTAGT
*
70958255 ACTACACACGTGACCTCACCATCTAATACACG
66 ACTACACACGCGACCTCACCATCTAATACACG
* * * *
70958287 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACA-ACGCGA-C-CA-ATATCGGGTACACATAGTAGCCTGCACT
*
70958352 TAGTACTACACATGCGACCTCAC
62 TAGTACTACACACGCGACCTCAC
70958375 AATAGATCAT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
97 24 0.32
98 4 0.05
99 1 0.01
100 2 0.03
101 44 0.59
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (97 bp):
TAGTAGCCTGCACTTAGTACTACAACGCGACCAATATCGGGTACACATAGTAGCCTGCACTTAGT
ACTACACACGCGACCTCACCATCTAATACACG
Found at i:70962309 original size:19 final size:19
Alignment explanation
Indices: 70962285--70962323 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
70962275 ATATATATAC
70962285 ATCATAAATTTTTATTCAT
1 ATCATAAATTTTTATTCAT
70962304 ATCATAAATTTTTATTCAT
1 ATCATAAATTTTTATTCAT
70962323 A
1 A
70962324 CTTTTCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (19 bp):
ATCATAAATTTTTATTCAT
Found at i:70963911 original size:50 final size:49
Alignment explanation
Indices: 70963795--70963970 Score: 176
Period size: 50 Copynumber: 3.5 Consensus size: 49
70963785 CTGGTACGCA
* * * * **
70963795 TAGTAGCCTGCACTTAGTACTACAAATGCGACCAATAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
70963844 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
* *** * *
70963894 TAGTAGCCTGCACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAG---TCTAATACACG
70963945 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
70963971 TGCAACCTCA
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 28 0.26
50 41 0.38
51 35 0.33
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Done.