Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 209 of 345
Found at i:70963979 original size:101 final size:99
Alignment explanation
Indices: 70963795--70963981 Score: 248
Period size: 101 Copynumber: 1.9 Consensus size: 99
70963785 CTGGTACGCA
* * *
70963795 TAGTAGCCTGCACTTAGTACTACAAATGCGACCAATAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACAAACGCGACCAATAGTCGGGTACACATAGTAGCCTGCACTTA
**
70963860 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCAACCTCACCATCTAATACACG
* * * ** *
70963894 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACAAACGCGA-C-CAATAGTCGGGTACACATAGTAGCCTGCACT
*
70963959 TAGTACTACACATGCAACCTCAC
64 TAGTACTACACACGCAACCTCAC
70963982 AATAGATCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 28 0.38
100 1 0.01
101 45 0.61
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACAAACGCGACCAATAGTCGGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCAACCTCACCATCTAATACACG
Found at i:70988214 original size:46 final size:46
Alignment explanation
Indices: 70988147--70988321 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
70988137 TGTAACCTGC
*
70988147 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCTTTCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCACAT
* *
70988193 CCATAAGTGAACTCGGACTCAACTCAACGAACTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-CT--TTCACAT
* ** * *
70988243 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCACAT
* * *
70988286 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
70988322 ATACCCAAAT
Statistics
Matches: 105, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.55
47 26 0.25
48 3 0.03
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCACAT
Found at i:70990209 original size:47 final size:47
Alignment explanation
Indices: 70990131--70990490 Score: 594
Period size: 47 Copynumber: 7.6 Consensus size: 47
70990121 CCCTTCGGGA
* * * * *
70990131 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
70990178 CCTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70990225 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70990272 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70990319 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70990366 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70990413 CTTATCACATATATATACACTTTCACATTCATCACAACGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70990462 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
70990491 TATTCAAATA
Statistics
Matches: 299, Mismatches: 12, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
47 232 0.78
49 67 0.22
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70990210 original size:25 final size:25
Alignment explanation
Indices: 70990182--70990259 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
70990172 CTCGGCCCTG
70990182 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
*** *** *
70990207 TCACAT-TGGCCA-TTAGGCCTT-A
1 TCACATATATACACTTTCACATTCA
70990229 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
70990254 TCACAT
1 TCACAT
70990260 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 13 0.36
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:70999253 original size:46 final size:46
Alignment explanation
Indices: 70999078--70999253 Score: 162
Period size: 46 Copynumber: 3.8 Consensus size: 46
70999068 TGTAACCCGC
* * * *
70999078 CCATAAGCGAACTCAAACTCAACTCAACGAGCTCGGGCGTTCGCTT
1 CCATAAGTGAACTCAAACTCAACTCAACGAGCTCGGACATTCGCAT
** * *
70999124 CCATAAGTGAACTCGGAGTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAAACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* **
70999174 -C-TCA-TGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCAAACTCAACTCAACGAGCTCGGACATTCGCAT
* *
70999217 CCATAAGTTAACTCAAACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAAACTCAACTCAACGAGCTCGGA
70999254 TGCCTAAATA
Statistics
Matches: 105, Mismatches: 16, Indels: 18
0.76 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 58 0.55
47 29 0.28
48 2 0.02
49 2 0.02
50 2 0.02
51 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCAAACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:71001419 original size:14 final size:14
Alignment explanation
Indices: 71001396--71001428 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
71001386 CTATGTGTTC
71001396 TATTTATTTTTAAT
1 TATTTATTTTTAAT
*
71001410 TATTTGTTTTTAAT
1 TATTTATTTTTAAT
71001424 T-TTTA
1 TATTTA
71001429 AATATGCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 3 0.18
14 14 0.82
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (14 bp):
TATTTATTTTTAAT
Found at i:71010546 original size:43 final size:43
Alignment explanation
Indices: 71010468--71010902 Score: 708
Period size: 43 Copynumber: 10.1 Consensus size: 43
71010458 TTAAATCCCA
*
71010468 CAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* * * *
71010511 CAGGATTCATGCCAGTGATGTGTATTCGGGTCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* *
71010554 TAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* *
71010597 CAGGCTTCGTGCCGGGGATGTGTATTCGGGCCTTTGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
* * **
71010640 GAGGCTTCGTGCCGGTGATGTATATTCGAACCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
*
71010683 CAGGCTTCGTGCCGGTGATGTGTATTCTGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
*
71010726 CAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
*
71010769 CAGGCTTCTTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
*
71010812 CAGGCTTCGTGCCGGTGATGTATATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
*
71010855 CAGGCTTCGTGCCGTTGATGTGTATTCGGGCCTTCGTGCCTAG
1 CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
71010898 CAGGC
1 CAGGC
71010903 GTAATGCTGG
Statistics
Matches: 360, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 360 1.00
ACGTcount: A:0.11, C:0.24, G:0.33, T:0.31
Consensus pattern (43 bp):
CAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAG
Found at i:71019568 original size:21 final size:20
Alignment explanation
Indices: 71019553--71019607 Score: 76
Period size: 21 Copynumber: 2.6 Consensus size: 20
71019543 TCTGCTACCA
71019553 TCGCTGCTGCCTCTGCCTCTC
1 TCGCTGCTGCCTCTGCCTC-C
71019574 TCGCT-CGTGCCTCTGCCTCCC
1 TCGCTGC-TGCCTCTGCCT-CC
71019595 TCGCTGCTGCCTC
1 TCGCTGCTGCCTC
71019608 CCTCTCTGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
20 1 0.03
21 28 0.90
22 2 0.06
ACGTcount: A:0.00, C:0.49, G:0.20, T:0.31
Consensus pattern (20 bp):
TCGCTGCTGCCTCTGCCTCC
Found at i:71019604 original size:15 final size:15
Alignment explanation
Indices: 71019586--71019623 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
71019576 GCTCGTGCCT
71019586 CTGCCTCCCTCGCTG
1 CTGCCTCCCTCGCTG
*
71019601 CTGCCTCCCTCTCTG
1 CTGCCTCCCTCGCTG
71019616 CTGCCTCC
1 CTGCCTCC
71019624 GCTCTAAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.00, C:0.55, G:0.16, T:0.29
Consensus pattern (15 bp):
CTGCCTCCCTCGCTG
Found at i:71020062 original size:13 final size:14
Alignment explanation
Indices: 71020037--71020065 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71020027 TGATGAATTG
71020037 AATTAAACAATTAT
1 AATTAAACAATTAT
71020051 AATTAAAC-ATTAT
1 AATTAAACAATTAT
71020064 AA
1 AA
71020066 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:71020254 original size:17 final size:16
Alignment explanation
Indices: 71020232--71020270 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
71020222 AAAATATTAT
71020232 TTAATAGTAGAAAGTAA
1 TTAATAGTAGAAAG-AA
* *
71020249 TTAATATTTGAAAGAA
1 TTAATAGTAGAAAGAA
71020265 TTAATA
1 TTAATA
71020271 AATTCATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (16 bp):
TTAATAGTAGAAAGAA
Found at i:71025191 original size:9 final size:9
Alignment explanation
Indices: 71025170--71025336 Score: 80
Period size: 9 Copynumber: 19.0 Consensus size: 9
71025160 TATGTATTAC
*
71025170 GTAAGTTAA
1 GTAAGTTAT
71025179 GTAAGCTT-T
1 GTAAG-TTAT
71025188 GTAAGTTAT
1 GTAAGTTAT
71025197 GTAAGTTAT
1 GTAAGTTAT
* *
71025206 GTTA-TGAT
1 GTAAGTTAT
* *
71025214 ATACATTTAT
1 GTA-AGTTAT
*
71025224 GTAAGGTAT
1 GTAAGTTAT
71025233 GTAAGTTAT
1 GTAAGTTAT
* *
71025242 GATATGATAT
1 G-TAAGTTAT
* *
71025252 AT-ATTTAT
1 GTAAGTTAT
71025260 GT-A-TTAT
1 GTAAGTTAT
*
71025267 GTAAGTTGT
1 GTAAGTTAT
71025276 GTAAGTTAT
1 GTAAGTTAT
* *
71025285 GATATGATAT
1 G-TAAGTTAT
* *
71025295 AT-ATTTAT
1 GTAAGTTAT
*
71025303 GT-A-TTTT
1 GTAAGTTAT
*
71025310 GTAAGGTAT
1 GTAAGTTAT
*
71025319 ATAAGTTAT
1 GTAAGTTAT
71025328 GTAAGTTAT
1 GTAAGTTAT
71025337 TATATGATAT
Statistics
Matches: 116, Mismatches: 32, Indels: 20
0.69 0.19 0.12
Matches are distributed among these distances:
7 11 0.09
8 18 0.16
9 68 0.59
10 19 0.16
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:71025234 original size:36 final size:36
Alignment explanation
Indices: 71025187--71025305 Score: 130
Period size: 36 Copynumber: 3.1 Consensus size: 36
71025177 AAGTAAGCTT
* *
71025187 TGTAAGTTATGTAAGTTATGTTATGATATACATTTA
1 TGTAAGGTATGTAAGTTATGATATGATATACATTTA
*
71025223 TGTAAGGTATGTAAGTTATGATATGATATATATTTA
1 TGTAAGGTATGTAAGTTATGATATGATATACATTTA
* *
71025259 TGTATTATGTAAGTTGTGTAAGTTATGATATGATATATATTTA
1 TGTA--A-G---G-TATGTAAGTTATGATATGATATACATTTA
71025302 TGTA
1 TGTA
71025306 TTTTGTAAGG
Statistics
Matches: 72, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
36 37 0.51
38 1 0.01
39 1 0.01
42 1 0.01
43 32 0.44
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (36 bp):
TGTAAGGTATGTAAGTTATGATATGATATACATTTA
Found at i:71025279 original size:43 final size:43
Alignment explanation
Indices: 71025220--71025328 Score: 182
Period size: 43 Copynumber: 2.5 Consensus size: 43
71025210 TGATATACAT
71025220 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
* *
71025263 TTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGTA
1 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
* *
71025306 TTTTGTAAGGTATATAAGTTATG
1 TTATGTAAGGTATGTAAGTTATG
71025329 TAAGTTATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48
Consensus pattern (43 bp):
TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTA
Found at i:71025341 original size:43 final size:43
Alignment explanation
Indices: 71025218--71025341 Score: 160
Period size: 43 Copynumber: 2.9 Consensus size: 43
71025208 TATGATATAC
*
71025218 ATTTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGT
1 ATTT-TGTAAGGTATGTAAGTTATGATAAGATATATATTTATGT
* * * *
71025262 ATTATGTAAGTTGTGTAAGTTATGATATGATATATATTTATGT
1 ATTTTGTAAGGTATGTAAGTTATGATAAGATATATATTTATGT
* *
71025305 ATTTTGTAAGGTATATAAGTTATG-TAAGTTATTATAT
1 ATTTTGTAAGGTATGTAAGTTATGATAAGATA-TATAT
71025342 GATATATATT
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
42 5 0.07
43 62 0.89
44 3 0.04
ACGTcount: A:0.34, C:0.00, G:0.18, T:0.48
Consensus pattern (43 bp):
ATTTTGTAAGGTATGTAAGTTATGATAAGATATATATTTATGT
Found at i:71025357 original size:13 final size:13
Alignment explanation
Indices: 71025334--71025368 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
71025324 TTATGTAAGT
*
71025334 TATTATATGATATA
1 TATT-TATGATACA
71025348 TATTTATGATACA
1 TATTTATGATACA
71025361 TATTTATG
1 TATTTATG
71025369 TATTATGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.37, C:0.03, G:0.09, T:0.51
Consensus pattern (13 bp):
TATTTATGATACA
Found at i:71026479 original size:19 final size:19
Alignment explanation
Indices: 71026455--71026494 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
71026445 TACAAAGCTC
71026455 GTTGGTATATCAAATTATA
1 GTTGGTATATCAAATTATA
71026474 GTTGGTATATCAAATTATA
1 GTTGGTATATCAAATTATA
71026493 GT
1 GT
71026495 CAAATCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.42
Consensus pattern (19 bp):
GTTGGTATATCAAATTATA
Found at i:71029517 original size:14 final size:14
Alignment explanation
Indices: 71029495--71029531 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
71029485 TATTATCTCT
71029495 TAAATAATTTAATC
1 TAAATAATTTAATC
*
71029509 TAAA-AAATTAATC
1 TAAATAATTTAATC
71029522 TAAATAATTT
1 TAAATAATTT
71029532 CATTTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:71029762 original size:7 final size:7
Alignment explanation
Indices: 71029740--71029866 Score: 71
Period size: 7 Copynumber: 18.0 Consensus size: 7
71029730 CATTAACCAT
71029740 ATAAACC
1 ATAAACC
71029747 -TAAACC
1 ATAAACC
71029753 ATAAACC
1 ATAAACC
***
71029760 ATAATTT
1 ATAAACC
*
71029767 ATTAA-C
1 ATAAACC
71029773 ACTAAACC
1 A-TAAACC
*
71029781 CTAAACC
1 ATAAACC
71029788 ATAAACC
1 ATAAACC
*
71029795 CTAAACC
1 ATAAACC
*
71029802 CTAAACTC
1 ATAAAC-C
71029810 -TAAACC
1 ATAAACC
* *
71029816 TTAACCC
1 ATAAACC
*
71029823 CTAAACC
1 ATAAACC
*
71029830 ATAAACT
1 ATAAACC
*
71029837 TTAAAACC
1 AT-AAACC
*
71029845 CTAAACC
1 ATAAACC
*
71029852 CTAAAACC
1 AT-AAACC
71029860 ATAAACC
1 ATAAACC
71029867 TTACACATAA
Statistics
Matches: 94, Mismatches: 19, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
6 8 0.09
7 73 0.78
8 13 0.14
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.20
Consensus pattern (7 bp):
ATAAACC
Found at i:71029794 original size:14 final size:14
Alignment explanation
Indices: 71029775--71029866 Score: 103
Period size: 14 Copynumber: 6.4 Consensus size: 14
71029765 TTATTAACAC
71029775 TAAACCCTAAACCA
1 TAAACCCTAAACCA
*
71029789 TAAACCCTAAACCC
1 TAAACCCTAAACCA
* *
71029803 TAAACTCTAAACCT
1 TAAACCCTAAACCA
*
71029817 TAACCCCTAAACCA
1 TAAACCCTAAACCA
** *
71029831 TAAACTTTAAAACCC
1 TAAACCCT-AAACCA
71029846 TAAACCCTAAAACCA
1 TAAACCCT-AAACCA
71029861 TAAACC
1 TAAACC
71029867 TTACACATAA
Statistics
Matches: 64, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
14 41 0.64
15 23 0.36
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:71029798 original size:21 final size:21
Alignment explanation
Indices: 71029775--71029892 Score: 123
Period size: 21 Copynumber: 5.6 Consensus size: 21
71029765 TTATTAACAC
*
71029775 TAAACCCTAAACCATAAACCC
1 TAAACCCTAAACCATAAACCT
71029796 TAAACCCTAAACTC-TAAACCT
1 TAAACCCTAAAC-CATAAACCT
* *
71029817 TAACCCCTAAACCATAAACTT
1 TAAACCCTAAACCATAAACCT
* *
71029838 TAAAACCCTAAACCCTAAAACCA
1 T-AAACCCTAAACCAT-AAACCT
* * *
71029861 TAAACCTTACA-CATAAACTT
1 TAAACCCTAAACCATAAACCT
71029881 TAAACCCTAAAC
1 TAAACCCTAAAC
71029893 TGGCCCATAA
Statistics
Matches: 78, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
20 14 0.18
21 38 0.49
22 21 0.27
23 5 0.06
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (21 bp):
TAAACCCTAAACCATAAACCT
Found at i:71029885 original size:50 final size:50
Alignment explanation
Indices: 71029768--71029878 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 50
71029758 CCATAATTTA
* **
71029768 TTAACAC-TAAACCCTAAACCAT-AAACCCTAAACCCTAAACTCTAAACC
1 TTAACACATAAACCATAAACTTTAAAACCCTAAACCCTAAACTCTAAACC
* *
71029816 TTAACCCCTAAACCATAAACTTTAAAACCCTAAACCCTAAAAC-CATAAACC
1 TTAACACATAAACCATAAACTTTAAAACCCTAAACCCT-AAACTC-TAAACC
71029867 TT-ACACATAAAC
1 TTAACACATAAAC
71029879 TTTAAACCCT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
48 6 0.11
49 12 0.23
50 23 0.43
51 12 0.23
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (50 bp):
TTAACACATAAACCATAAACTTTAAAACCCTAAACCCTAAACTCTAAACC
Found at i:71029893 original size:14 final size:14
Alignment explanation
Indices: 71029775--71029892 Score: 87
Period size: 14 Copynumber: 8.4 Consensus size: 14
71029765 TTATTAACAC
*
71029775 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
71029789 TAAACCCTAAACCC
1 TAAACCTTAAACCA
*
71029803 TAAA-CTCTAAACCT
1 TAAACCT-TAAACCA
* *
71029817 TAACCCCTAAACCA
1 TAAACCTTAAACCA
* *
71029831 TAAACTTTAAAACCC
1 TAAACCTT-AAACCA
*
71029846 TAAACCCTAAAACCA
1 TAAA-CCTTAAACCA
*
71029861 TAAACCTTACA-CA
1 TAAACCTTAAACCA
* *
71029874 TAAACTTTAAACCC
1 TAAACCTTAAACCA
71029888 TAAAC
1 TAAAC
71029893 TGGCCCATAA
Statistics
Matches: 81, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
13 12 0.15
14 48 0.59
15 19 0.23
16 2 0.02
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:71030164 original size:14 final size:14
Alignment explanation
Indices: 71030136--71030182 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
71030126 TTAACCAAAA
71030136 CCCTAAACTCATAAT
1 CCCTAAAC-CATAAT
*
71030151 CCCTAATCCATAAT
1 CCCTAAACCATAAT
* *
71030165 CCATAAACCATAAA
1 CCCTAAACCATAAT
71030179 CCCT
1 CCCT
71030183 GAATAATAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 20 0.74
15 7 0.26
ACGTcount: A:0.40, C:0.36, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCTAAACCATAAT
Found at i:71030943 original size:39 final size:39
Alignment explanation
Indices: 71030845--71030944 Score: 93
Period size: 39 Copynumber: 2.5 Consensus size: 39
71030835 AAAAAATTTT
* *
71030845 GCGGCGTTTTT-TAACAAACGCCGCTATATGCATACCTTTA
1 GCGGCGTTTTTGT-ACAAACGCCACTATATGCATA-CTATA
71030885 GCGGCGCTTCTTTG-A-AAACGCCACTAGTACTG-AT-CTATA
1 GCGGCG-TT-TTTGTACAAACGCCACTA-TA-TGCATACTATA
71030924 GCGGCGTTTTTGTACAAACGC
1 GCGGCGTTTTTGTACAAACGC
71030945 TGCTAATGCC
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
37 4 0.08
38 3 0.06
39 16 0.31
40 16 0.31
41 7 0.14
42 5 0.10
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (39 bp):
GCGGCGTTTTTGTACAAACGCCACTATATGCATACTATA
Found at i:71031079 original size:13 final size:12
Alignment explanation
Indices: 71031050--71031092 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
71031040 GCGCTTTTAT
*
71031050 TAAAAACTCCGC
1 TAAAAACGCCGC
71031062 TAAAAACGCCGC
1 TAAAAACGCCGC
**
71031074 TAAAAACGCTAC
1 TAAAAACGCCGC
71031086 TAAAAAC
1 TAAAAAC
71031093 CTATTTTGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.49, C:0.28, G:0.09, T:0.14
Consensus pattern (12 bp):
TAAAAACGCCGC
Found at i:71031432 original size:40 final size:40
Alignment explanation
Indices: 71031380--71031780 Score: 331
Period size: 41 Copynumber: 9.9 Consensus size: 40
71031370 TTTAAAATAC
* **
71031380 AGAGCAATAGCGGCGTTTTTTTTAAAACGCCGCTAAAAAT
1 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
* **
71031420 AGAGCAACAGCGGCG-TTTTAATAAAAAACGCCGCTAAAAACT
1 AGAGCAATAGCGGCGCTTTTGGT--AAAACGCCGCTAAAAA-T
* * * * *
71031462 -GATCATTAGCGGCGCTTTTGGTAAAACACCGTTAAAGAT
1 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
* * **
71031501 TGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACC
1 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAA-AAT
* * * **
71031542 AGGGCATTAGCGGCTCTTTTGGTAAAACGCCGCTAAAGACC
1 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAA-AAT
* * **
71031583 AGGGCAGTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACC
1 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAA-AAT
* * **
71031624 AGGGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACC
1 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAA-AAT
* * **
71031665 AGGGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACC
1 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAA-AAT
* * * **
71031706 AGGGCATTAGCGGCG-TTTTGGTAAAATGCCGCTAAAGACC
1 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAA-AAT
* * * *
71031746 AGGGCATTAGCGACGCTTTTAGTAAAACGCCGCTA
1 AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTA
71031781 GAAGTTATAT
Statistics
Matches: 327, Mismatches: 27, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
39 6 0.02
40 98 0.30
41 217 0.66
42 6 0.02
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (40 bp):
AGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAT
Found at i:71031448 original size:41 final size:40
Alignment explanation
Indices: 71031380--71031459 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
71031370 TTTAAAATAC
* * **
71031380 AGAGCAATAGCGGCGTTTTTTTTAAAACGCCGCTAAAAAT
1 AGAGCAACAGCGGCGTTTTATAAAAAACGCCGCTAAAAAT
71031420 AGAGCAACAGCGGCGTTTTAATAAAAAACGCCGCTAAAAA
1 AGAGCAACAGCGGCGTTTT-ATAAAAAACGCCGCTAAAAA
71031460 CTGATCATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
40 18 0.51
41 17 0.49
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.21
Consensus pattern (40 bp):
AGAGCAACAGCGGCGTTTTATAAAAAACGCCGCTAAAAAT
Found at i:71031561 original size:41 final size:41
Alignment explanation
Indices: 71031465--71031780 Score: 528
Period size: 41 Copynumber: 7.8 Consensus size: 41
71031455 AAAAACTGAT
* * ** *
71031465 CATTAGCGGCGCTTTTGGTAAAACACCGTTAAAGA-TTGAG
1 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
71031505 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
1 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
*
71031546 CATTAGCGGCTCTTTTGGTAAAACGCCGCTAAAGACCAGGG
1 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
*
71031587 CAGTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
1 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
71031628 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
1 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
71031669 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
1 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
*
71031710 CATTAGCGGCG-TTTTGGTAAAATGCCGCTAAAGACCAGGG
1 CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
* *
71031750 CATTAGCGACGCTTTTAGTAAAACGCCGCTA
1 CATTAGCGGCGCTTTTGGTAAAACGCCGCTA
71031781 GAAGTTATAT
Statistics
Matches: 261, Mismatches: 13, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
40 71 0.27
41 190 0.73
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.22
Consensus pattern (41 bp):
CATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCAGGG
Found at i:71031963 original size:14 final size:14
Alignment explanation
Indices: 71031941--71031985 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
71031931 TTAATTATCA
*
71031941 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
71031955 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
71031969 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
71031983 TTA
1 TTA
71031986 AACAGGTTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:71035050 original size:21 final size:21
Alignment explanation
Indices: 71035005--71035050 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
71034995 CATTTCATTG
*
71035005 TGTTTGGAAGAAACAAAGAAG
1 TGTTTGGAAGAAACAAAGAAA
* * *
71035026 TGTTTGGAATAAATAAATAAA
1 TGTTTGGAAGAAACAAAGAAA
71035047 TGTT
1 TGTT
71035051 GTCAGCATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.30
Consensus pattern (21 bp):
TGTTTGGAAGAAACAAAGAAA
Found at i:71036024 original size:18 final size:18
Alignment explanation
Indices: 71036003--71036043 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
71035993 CCAACTACAC
71036003 TTTGCGGTCCAAGAACAA
1 TTTGCGGTCCAAGAACAA
71036021 TTTGCGGTCCAAGAACAA
1 TTTGCGGTCCAAGAACAA
71036039 TTTGC
1 TTTGC
71036044 AGGAGGCACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (18 bp):
TTTGCGGTCCAAGAACAA
Found at i:71036753 original size:42 final size:42
Alignment explanation
Indices: 71036635--71036860 Score: 355
Period size: 43 Copynumber: 5.3 Consensus size: 42
71036625 TTTCATGACT
*
71036635 TTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCGTGATC
71036678 TTTAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCGTGATC
*
71036721 TTTAGCGGTGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATC
1 TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATC
*
71036763 TTTAGCGGCGTTTGT-GAGAAAGCGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGTGGA-AAAGCGCCGCTAAAGGTCGTGATC
* *
71036805 TTTAGTGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCGTAATC
1 TTTAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCGTGATC
*
71036848 TTTAGCGGTGTTT
1 TTTAGCGGCGTTT
71036861 TTTCAAATAA
Statistics
Matches: 170, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
41 2 0.01
42 78 0.46
43 88 0.52
44 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATC
Found at i:71036753 original size:85 final size:84
Alignment explanation
Indices: 71036627--71036860 Score: 355
Period size: 85 Copynumber: 2.8 Consensus size: 84
71036617 TTTTTGAATT
*
71036627 TCATGA-CTTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTT
1 TCATGATC-TTTAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTT
71036691 GT-AGGAAAAGCGCCGCTAAAGG
64 GTGA-G-AAAGCGCCGCTAAAGG
* *
71036713 TCGTGATCTTTAGCGGTGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTTGT
1 TCATGATCTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTTGT
71036778 GAGAAAGCGCCGCTAAAGG
66 GAGAAAGCGCCGCTAAAGG
* * *
71036797 TCATGATCTTTAGTGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCGTAATCTTTAGCGGTGTTT
1 TCATGATCTTTAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTT
71036861 TTTCAAATAA
Statistics
Matches: 137, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
84 38 0.28
85 78 0.57
86 20 0.15
87 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (84 bp):
TCATGATCTTTAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCGTGATCTTTAGCGGCGTTTGT
GAGAAAGCGCCGCTAAAGG
Found at i:71043522 original size:30 final size:30
Alignment explanation
Indices: 71043486--71043545 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
71043476 CCATCATCGA
*
71043486 AAGGTGTAGTTAATGTGCATGTTTAAGTCT
1 AAGGTGTAGTTAATGTGAATGTTTAAGTCT
*
71043516 AAGGTGTGGTTAATGTGAATGTTTAAGTCT
1 AAGGTGTAGTTAATGTGAATGTTTAAGTCT
71043546 TAGATTAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.05, G:0.28, T:0.40
Consensus pattern (30 bp):
AAGGTGTAGTTAATGTGAATGTTTAAGTCT
Found at i:71051714 original size:43 final size:44
Alignment explanation
Indices: 71051666--71051813 Score: 151
Period size: 43 Copynumber: 3.4 Consensus size: 44
71051656 TTATCAAGAT
*
71051666 TGATTACATGTAAGACCATGTCTGGGA-AGTTGGCATTGTAT-TG
1 TGATTACATGTAAGACCATGTCTGGGACA-TTGGCATCGTATATG
* ** *
71051709 TGATTACGTGTAAGATGATGTCTGGGACATTGGCATCGT-TATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATG
* * * * * *
71051752 TGATTTCGTGTAAGACCCTGTCTAGGACAATGACATCG-ATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATG
*
71051795 TGATAACATGTAAGACCAT
1 TGATTACATGTAAGACCAT
71051814 ATCCGGGATA
Statistics
Matches: 85, Mismatches: 17, Indels: 6
0.79 0.16 0.06
Matches are distributed among these distances:
42 1 0.01
43 83 0.98
44 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.32
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATATG
Found at i:71068572 original size:17 final size:16
Alignment explanation
Indices: 71068547--71068580 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
71068537 CCGTGTACTA
*
71068547 GGTCGTATGTCTCACAG
1 GGTCATATGTCTC-CAG
71068564 GGTCATATGTCTCCAG
1 GGTCATATGTCTCCAG
71068580 G
1 G
71068581 TCGTGATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (16 bp):
GGTCATATGTCTCCAG
Found at i:71068824 original size:5 final size:5
Alignment explanation
Indices: 71068802--71068843 Score: 52
Period size: 5 Copynumber: 8.6 Consensus size: 5
71068792 GTTTTTTTTG
*
71068802 AAATA ACATA AAAGTA AAAT- AAAT- AAATA AAATA AAATA AAA
1 AAATA AAATA AAA-TA AAATA AAATA AAATA AAATA AAATA AAA
71068844 ACACTCGGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 8 0.24
5 20 0.61
6 5 0.15
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:71069442 original size:61 final size:61
Alignment explanation
Indices: 71069345--71069469 Score: 223
Period size: 61 Copynumber: 2.0 Consensus size: 61
71069335 TTCCTGCAAA
* *
71069345 GAATGTCTAGTTGCATGATTACTAACATTAATAGAATAACGAATATCATCTCGCTCACTAG
1 GAATGTCTAGTTGCATGATTAATAACATTAACAGAATAACGAATATCATCTCGCTCACTAG
*
71069406 GAATGTCTAGTTGCATGATTAATGACATTAACAGAATAACGAATATCATCTCGCTCACTAG
1 GAATGTCTAGTTGCATGATTAATAACATTAACAGAATAACGAATATCATCTCGCTCACTAG
71069467 GAA
1 GAA
71069470 CTCTAACAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30
Consensus pattern (61 bp):
GAATGTCTAGTTGCATGATTAATAACATTAACAGAATAACGAATATCATCTCGCTCACTAG
Found at i:71070510 original size:32 final size:29
Alignment explanation
Indices: 71070453--71070511 Score: 73
Period size: 32 Copynumber: 1.9 Consensus size: 29
71070443 GTTGGGCCAA
*
71070453 ATGTATAAATTTATAAATAAGAAAATTAT
1 ATGTATAAATTAATAAATAAGAAAATTAT
*
71070482 ATGTATTAAATTGAATAGAATATGAAAATT
1 ATGTA-TAAATT-AATA-AATAAGAAAATT
71070512 GAGGCGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.20
30 6 0.24
31 3 0.12
32 11 0.44
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (29 bp):
ATGTATAAATTAATAAATAAGAAAATTAT
Found at i:71070853 original size:40 final size:39
Alignment explanation
Indices: 71070809--71070895 Score: 97
Period size: 39 Copynumber: 2.2 Consensus size: 39
71070799 TCCAGTACCT
* *
71070809 TTGAATGCACATACATACCCCTGTTTGTACTTCG-GAACCC
1 TTGAATGCACACACAT-CCCCTGTTTGTAC-TAGAGAACCC
** *
71070849 TTGAATGCTTACACATGCCCTGTTTGTACTAGAGAACCC
1 TTGAATGCACACACATCCCCTGTTTGTACTAGAGAACCC
71070888 -TGAATGCA
1 TTGAATGCA
71070896 TATTAATGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
38 9 0.22
39 18 0.45
40 13 0.32
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (39 bp):
TTGAATGCACACACATCCCCTGTTTGTACTAGAGAACCC
Found at i:71073586 original size:12 final size:12
Alignment explanation
Indices: 71073569--71073594 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
71073559 AAATATGCTT
71073569 TAATTACCATTA
1 TAATTACCATTA
71073581 TAATTACCATTA
1 TAATTACCATTA
71073593 TA
1 TA
71073595 CCATGATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATTACCATTA
Found at i:71076117 original size:136 final size:136
Alignment explanation
Indices: 71075873--71076143 Score: 515
Period size: 136 Copynumber: 2.0 Consensus size: 136
71075863 AAAAATCATC
71075873 AAAAACAAAGCAAAATACATACCCGAATTAAGCTTCCCAAAGTTTCGAATGTTTAAAGCTTTCAA
1 AAAAACAAAGCAAAATACATACCCGAATTAAGCTTCCCAAAGTTTCGAATGTTTAAAGCTTTCAA
*
71075938 AAGCTTTATTTTCTTCTTAGGTTCGGCCAAGAAAGATGAACACTTGCATGGCCATTTGTTTTTGT
66 AAGCTTTATTTTCTTCTTAGGTTCAGCCAAGAAAGATGAACACTTGCATGGCCATTTGTTTTTGT
71076003 TTAATA
131 TTAATA
* *
71076009 AAAAACAGAGCAAAATACATACCCGAATTAAGCTTCCCAAAGTTTTGAATGTTTAAAGCTTTCAA
1 AAAAACAAAGCAAAATACATACCCGAATTAAGCTTCCCAAAGTTTCGAATGTTTAAAGCTTTCAA
71076074 AAGCTTTATTTTCTTCTTAGGTTCAGCCAAGAAAGATGAACACTTGCATGGCCATTTGTTTTTGT
66 AAGCTTTATTTTCTTCTTAGGTTCAGCCAAGAAAGATGAACACTTGCATGGCCATTTGTTTTTGT
71076139 TTAAT
131 TTAAT
71076144 TTAATACGTA
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 132 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (136 bp):
AAAAACAAAGCAAAATACATACCCGAATTAAGCTTCCCAAAGTTTCGAATGTTTAAAGCTTTCAA
AAGCTTTATTTTCTTCTTAGGTTCAGCCAAGAAAGATGAACACTTGCATGGCCATTTGTTTTTGT
TTAATA
Found at i:71076386 original size:13 final size:13
Alignment explanation
Indices: 71076368--71076392 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71076358 ACAAACGATA
71076368 AAATTTTCACACG
1 AAATTTTCACACG
71076381 AAATTTTCACAC
1 AAATTTTCACAC
71076393 ATATAAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:71079511 original size:47 final size:47
Alignment explanation
Indices: 71079442--71079762 Score: 195
Period size: 47 Copynumber: 6.8 Consensus size: 47
71079432 GGTATAATGC
71079442 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
* * *
71079489 TGATGCCATGTCCCAGACATGGTCTTACACT-GACT-ATCGAAATCGAGGC
1 TGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATC--CATC-AAGT
* * * * * * *
71079538 CGACGCCATGTCCCAGACATGGTCCTACACAAGCTC-TAACATGTCCATT
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-CCA--TCAAGT
* * * * * *
71079587 CTGATGCCATGTTCCAGACATGTTTTTACACT-GACACAT-C-TCGTAGC
1 -TGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCATCCATC-AAGT
* *
71079634 CGATG-CATGTCACAGACAT-GTCTTACACTAGCACTCAT-C-TCAA-T
1 TGATGCCATGTCCCAGACATGGTCTTACACTAG--CTCATCCATCAAGT
* *
71079678 ACTGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--CCATAATATGGT
1 --TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCA-A--GT
*
71079728 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCA
1 TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
71079763 CACAAGTGAC
Statistics
Matches: 210, Mismatches: 38, Indels: 52
0.70 0.13 0.17
Matches are distributed among these distances:
44 8 0.04
45 15 0.07
46 41 0.20
47 62 0.30
48 19 0.09
49 34 0.16
50 30 0.14
51 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
TGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGT
Found at i:71079621 original size:99 final size:96
Alignment explanation
Indices: 71079446--71079711 Score: 255
Period size: 96 Copynumber: 2.8 Consensus size: 96
71079436 TAATGCTGAT
* * *
71079446 GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCATCAAGTTGATGCCATGTCCCAGACATGG
1 GCCATGTCCCAGACATGGTCCTACACAAGCTCATACATCAAGTTGATGCCATGTCCCAGACATGG
71079511 TCTTACACTGACTATCGAAATCGAGGCCGAC
66 TCTTACACTGACTATCGAAATCGAGGCCGAC
* * *
71079542 GCCATGTCCCAGACATGGTCCTACACAAGCTC-TAACATGTCCATTCTGATGCCATGTTCCAGAC
1 GCCATGTCCCAGACATGGTCCTACACAAGCTCAT-ACA--TCAAGT-TGATGCCATGTCCCAGAC
* * ** *
71079606 ATGTTTTTACACTGAC-A-C-ATCTCGTA-GCCGAT
62 ATGGTCTTACACTGACTATCGAAATCG-AGGCCGAC
* * *
71079638 G-CATGTCACAGACAT-GTCTTACACTAGCACTCAT-C-TCAA-TACTGATGCCATGTCCCAGAC
1 GCCATGTCCCAGACATGGTCCTACACAAG--CTCATACATCAAGT--TGATGCCATGTCCCAGAC
71079698 ATGGTCTTACACTG
62 ATGGTCTTACACTG
71079712 GCTCCCATAA
Statistics
Matches: 143, Mismatches: 18, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
91 1 0.01
92 33 0.23
94 10 0.07
95 15 0.10
96 45 0.31
97 3 0.02
98 5 0.03
99 31 0.22
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (96 bp):
GCCATGTCCCAGACATGGTCCTACACAAGCTCATACATCAAGTTGATGCCATGTCCCAGACATGG
TCTTACACTGACTATCGAAATCGAGGCCGAC
Found at i:71079636 original size:96 final size:97
Alignment explanation
Indices: 71079446--71079761 Score: 300
Period size: 94 Copynumber: 3.3 Consensus size: 97
71079436 TAATGCTGAT
* *
71079446 GCCATGTCCCAGACATGGTCTTACACTAGCTCATCCA-TCAAGT-TGATGCCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTC-TACATTCAATTCTGATGCCATGTCCCAGACAT
71079509 GGTCTTACACTGACTATCGAAATCGAGGCCGAC
65 GGTCTTACACTGACTATCGAAATCGAGGCCGAC
* * * *
71079542 GCCATGTCCCAGACATGGTCCTACACAAGCTCTAACATGTCCATTCTGATGCCATGTTCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCT-ACAT-TCAATTCTGATGCCATGTCCCAGACA
* * ** *
71079607 TGTTTTTACACTGAC-A-C-ATCTCGTA-GCCGAT
64 TGGTCTTACACTGACTATCGAAATCG-AGGCCGAC
* * *
71079638 G-CATGTCACAGACAT-GTCTTACACTAGCACT-CATCTCAATACTGATGCCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-TCAATTCTGATGCCATGTCCCAGACAT
* * * * *
71079700 GGTCTTACACTGGCT-CCCATAAT--ATGGTCGAT
65 GGTCTTACACTGACTATCGA-AATCGA-GGCCGAC
71079732 G-CATGTCCCAGACAT-GTCTTACACTAGCTC
1 GCCATGTCCCAGACATGGTCTTACACTAGCTC
71079762 ACACAAGTGA
Statistics
Matches: 182, Mismatches: 27, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
92 39 0.21
93 1 0.01
94 47 0.26
95 15 0.08
96 42 0.23
97 2 0.01
98 5 0.03
99 31 0.17
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (97 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTACATTCAATTCTGATGCCATGTCCCAGACATG
GTCTTACACTGACTATCGAAATCGAGGCCGAC
Found at i:71095744 original size:13 final size:13
Alignment explanation
Indices: 71095726--71095750 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71095716 GGTTTGTTTA
71095726 TTAAACTAATTAT
1 TTAAACTAATTAT
71095739 TTAAACTAATTA
1 TTAAACTAATTA
71095751 ACTGATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:71099103 original size:46 final size:47
Alignment explanation
Indices: 71098961--71099219 Score: 230
Period size: 46 Copynumber: 5.5 Consensus size: 47
71098951 AGGTTGACAC
* * * *
71098961 CATGTCCCAAACATGGTCTTACACTAGCTTTCACATGTCCAAGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGC-TT-ACATCTCGAAGCCGATG
* * * * *
71099010 CCATGTCCCATACATGGTTTTACACTGAC--ATATCTC-ATAGCCAATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-AGCCGATG
* *
71099056 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAAGCCGATG
* *
71099102 CATGTCCCAGACAT-GTCTTACACTAGCACT-CATCTC-AATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGC-TTACATCTCGAA-GCCGATG
** * *
71099148 CCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-GTAGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTACAT-CTCGAAGCCGATG
71099196 CATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
71099220 AGCTCACACA
Statistics
Matches: 177, Mismatches: 21, Indels: 26
0.79 0.09 0.12
Matches are distributed among these distances:
44 11 0.06
45 15 0.08
46 73 0.41
47 30 0.17
48 22 0.12
49 2 0.01
50 24 0.14
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAAGCCGATG
Found at i:71099168 original size:94 final size:93
Alignment explanation
Indices: 71098960--71099222 Score: 288
Period size: 94 Copynumber: 2.8 Consensus size: 93
71098950 AAGGTTGACA
* * * * *
71098960 CCATGTCCCAAACATGGTCTTACACTAGCTTTCACATGTCCAAGCCGATGCCATGTCCCATACAT
1 CCATGTCCCAGACATGGTCTTACACTGGC-TT-ACATAT-CGAGCCGATG-CATGTCCCAGACAT
*
71099025 GGTTTTACACT-G-ACATATCTCATAGCCAATG
62 -GTCTTACACTAGCACATATCTCATAGCCAATG
* *
71099056 -CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCAATGCATGTCCCAGACATGTC
1 CCATGTCCCAGACATGGTCTTACACTGGCTTACATATCGA-GCCGATGCATGTCCCAGACATGTC
*
71099119 TTACACTAGCAC-TCATCTCA-ATGCCGATG
65 TTACACTAGCACAT-ATCTCATA-GCCAATG
**
71099148 CCATGTCCCAGACATGGTCTTACACTGGCTCCCATAAT-GTAGCCGATGCATGTCCCAGACATGT
1 CCATGTCCCAGACATGGTCTTACACTGGCTTACAT-ATCG-AGCCGATGCATGTCCCAGACATGT
71099212 CTTACACTAGC
64 CTTACACTAGC
71099223 TCACACAAGT
Statistics
Matches: 146, Mismatches: 12, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
90 9 0.06
91 18 0.12
92 25 0.17
93 16 0.11
94 63 0.43
95 15 0.10
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (93 bp):
CCATGTCCCAGACATGGTCTTACACTGGCTTACATATCGAGCCGATGCATGTCCCAGACATGTCT
TACACTAGCACATATCTCATAGCCAATG
Found at i:71099214 original size:140 final size:140
Alignment explanation
Indices: 71098961--71099219 Score: 346
Period size: 140 Copynumber: 1.8 Consensus size: 140
71098951 AGGTTGACAC
* * *
71098961 CATGTCCCAAACATGGTCTTACACTAGCTTTCACATGTCCAAGCCGATGCCATGTCCCATACATG
1 CATGTCCCAAACATGGTCTTACACTAGC-TACACATCTCCAAGCCGATGCCATGTCCCAGACATG
* * *
71099026 GTTTTACACTGACATATCTCATAGCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT
65 GTCTTACACTGACATACCTAATAGCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT
71099091 CGAGGCCAATG
130 CGAGGCCAATG
* *
71099102 CATGTCCCAGACAT-GTCTTACACTAGC-ACTCATCT-CAATGCCGATGCCATGTCCCAGACATG
1 CATGTCCCAAACATGGTCTTACACTAGCTACACATCTCCAA-GCCGATGCCATGTCCCAGACATG
* * *
71099164 GTCTTACACTGGC-TCCCATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
65 GTCTTACACTGACATACC-TAA--TAGCCAATGCATGTCCCAGACATGTCTTACACT
71099220 AGCTCACACA
Statistics
Matches: 103, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
137 5 0.05
138 40 0.39
140 45 0.44
141 13 0.13
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (140 bp):
CATGTCCCAAACATGGTCTTACACTAGCTACACATCTCCAAGCCGATGCCATGTCCCAGACATGG
TCTTACACTGACATACCTAATAGCCAATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC
GAGGCCAATG
Found at i:71108192 original size:37 final size:37
Alignment explanation
Indices: 71108151--71108242 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 37
71108141 ACATTAGTTC
71108151 ATATAACAGTAAGATTTGCTTAG-TTAAGCTCCATTCA
1 ATATAACAGTAAGATTTGC-TAGATTAAGCTCCATTCA
** * *
71108188 ATATAATGGTATA-ATTTGCTCGATTAAGCTTCATTCA
1 ATATAACAGTA-AGATTTGCTAGATTAAGCTCCATTCA
* *
71108225 GTAGAACAGTAAGATTTG
1 ATATAACAGTAAGATTTG
71108243 GCTCGATAGA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
36 3 0.07
37 40 0.91
38 1 0.02
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (37 bp):
ATATAACAGTAAGATTTGCTAGATTAAGCTCCATTCA
Found at i:71109077 original size:22 final size:22
Alignment explanation
Indices: 71109049--71109099 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
71109039 TTCAACTTTC
* *
71109049 TTAATTAAGCTTTAA-TAAATCA
1 TTAATTAAGC-CTAATTAAACCA
71109071 TTAATTAAGCCTAATTAAACCA
1 TTAATTAAGCCTAATTAAACCA
71109093 TTAATTA
1 TTAATTA
71109100 CGCATAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 23 0.88
ACGTcount: A:0.45, C:0.12, G:0.04, T:0.39
Consensus pattern (22 bp):
TTAATTAAGCCTAATTAAACCA
Found at i:71109700 original size:46 final size:46
Alignment explanation
Indices: 71109633--71109720 Score: 158
Period size: 46 Copynumber: 1.9 Consensus size: 46
71109623 CTGATCCCAA
*
71109633 GTTGTAACAGAACCCCATGGAAGTGAATTCGACCATTGTTTTGCCT
1 GTTGTAACAGAACCCCATGGAAGTGAATTCAACCATTGTTTTGCCT
*
71109679 GTTGTAACAGAACCCTATGGAAGTGAATTCAACCATTGTTTT
1 GTTGTAACAGAACCCCATGGAAGTGAATTCAACCATTGTTTT
71109721 TCCTTACTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.32
Consensus pattern (46 bp):
GTTGTAACAGAACCCCATGGAAGTGAATTCAACCATTGTTTTGCCT
Found at i:71110259 original size:19 final size:18
Alignment explanation
Indices: 71110231--71110273 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
71110221 TTTAGAATGT
*
71110231 AAAAATTAAAATCAAAAC
1 AAAAATTAAAATAAAAAC
*
71110249 AAAATATTAAAATAAAAAT
1 AAAA-ATTAAAATAAAAAC
71110268 AAAAAT
1 AAAAAT
71110274 GACTAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAAATTAAAATAAAAAC
Found at i:71115918 original size:25 final size:25
Alignment explanation
Indices: 71115868--71115919 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
71115858 TATTTAAAAA
* * *
71115868 ATTAAATATAATAATTTATCTTTAT
1 ATTAAATAAAATAATTAATCTATAT
71115893 ATTAAATAAATATAATTAATC-ATAT
1 ATTAAATAAA-ATAATTAATCTATAT
71115918 AT
1 AT
71115920 GTAATAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTAAATAAAATAATTAATCTATAT
Found at i:71116081 original size:34 final size:34
Alignment explanation
Indices: 71116043--71116112 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
71116033 ATAATTTTAT
71116043 ACATTAAACTAAAATTTAATTTTTAAGTAATTAG
1 ACATTAAACTAAAATTTAATTTTTAAGTAATTAG
*
71116077 ACATTAAATTAAAATTTAATTTTTAAGTAATTAG
1 ACATTAAACTAAAATTTAATTTTTAAGTAATTAG
71116111 AC
1 AC
71116113 CATCTTTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (34 bp):
ACATTAAACTAAAATTTAATTTTTAAGTAATTAG
Found at i:71116260 original size:19 final size:19
Alignment explanation
Indices: 71116238--71116276 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
71116228 AATTTTTTTA
71116238 TTTTTCATAAATTTTAAAT
1 TTTTTCATAAATTTTAAAT
* *
71116257 TTTTTTATCAATTTTAAAT
1 TTTTTCATAAATTTTAAAT
71116276 T
1 T
71116277 GTTTACTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTTCATAAATTTTAAAT
Found at i:71117925 original size:40 final size:39
Alignment explanation
Indices: 71117858--71117933 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 39
71117848 TAAAGTTATT
*
71117858 CATAACATGCCCGAGCTTTGCCAACTTCCTTTCATGAAC
1 CATAACATGCCCGAGCTATGCCAACTTCCTTTCATGAAC
*
71117897 CATAACATGCCCAGAGCTATGTCAACTTCCTTTCATG
1 CATAACATGCCC-GAGCTATGCCAACTTCCTTTCATG
71117934 CCTAGAGGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
39 12 0.35
40 22 0.65
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (39 bp):
CATAACATGCCCGAGCTATGCCAACTTCCTTTCATGAAC
Found at i:71129269 original size:21 final size:19
Alignment explanation
Indices: 71129240--71129278 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
71129230 TATCATTTAA
71129240 AATTGTTTTATTACTTATTTT
1 AATTGTTTTA--ACTTATTTT
*
71129261 AATTTTTTTAACTTATTT
1 AATTGTTTTAACTTATTT
71129279 CGAACTCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (19 bp):
AATTGTTTTAACTTATTTT
Found at i:71129320 original size:26 final size:29
Alignment explanation
Indices: 71129291--71129355 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
71129281 AACTCTTTTG
*
71129291 ATTTATTTTAA-ATT-GTTTTTAT-TATT
1 ATTTATTTTAAGATTCGTTTTTATATAAT
* * *
71129317 ATTTATTCTAAGTTTCTTTTTTATATAAT
1 ATTTATTTTAAGATTCGTTTTTATATAAT
71129346 ATTTATTTTA
1 ATTTATTTTA
71129356 TACTTTTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 10 0.32
27 2 0.06
28 7 0.23
29 12 0.39
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (29 bp):
ATTTATTTTAAGATTCGTTTTTATATAAT
Found at i:71129427 original size:28 final size:26
Alignment explanation
Indices: 71129375--71129427 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
71129365 ATTTATACAC
* *
71129375 ATATATTATCTATTTTAAATTTTTTT
1 ATATATAATCTATTTTAAATGTTTTT
71129401 ATATATAATCTATTTTTAAATCGTTTT
1 ATATATAATCTA-TTTTAAAT-GTTTT
71129428 GTGCATCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 11 0.48
27 8 0.35
28 4 0.17
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (26 bp):
ATATATAATCTATTTTAAATGTTTTT
Found at i:71132840 original size:40 final size:40
Alignment explanation
Indices: 71132785--71132960 Score: 232
Period size: 40 Copynumber: 4.4 Consensus size: 40
71132775 GATGATAACT
** * *
71132785 GGGCTAAGTCCCGAAGGCATTTACGCTAGTGACTAGT-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCC
*
71132825 GGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
71132865 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
71132905 GGGCTAAGTCCCAAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
71132945 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
71132961 TACTTGGCTT
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
39 16 0.13
40 107 0.87
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:71144011 original size:40 final size:39
Alignment explanation
Indices: 71143826--71144030 Score: 218
Period size: 38 Copynumber: 5.2 Consensus size: 39
71143816 TCTTCGGAAT
* * ** *
71143826 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
* * * *
71143865 TTAACCCGGTGTATAGCAACTCGCAC-AATTCCTTCGGGTC
1 TT-AGCCGG-ATATATCAACTCGCACAAATGCCTTCGGGTC
*
71143905 TTAGCCGGATATAGCAACTCGCACAAATG-CTTCGGGTC
1 TTAGCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
71143943 TTAGCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
* * * *
71143982 TTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAG-CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTC
71144022 TTACGCCGG
1 TTA-GCCGG
71144031 TATCATTCAA
Statistics
Matches: 143, Mismatches: 16, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
38 52 0.36
39 23 0.16
40 52 0.36
41 16 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
Found at i:71144011 original size:78 final size:78
Alignment explanation
Indices: 71143826--71144033 Score: 226
Period size: 79 Copynumber: 2.6 Consensus size: 78
71143816 TCTTCGGAAT
* * * * *
71143826 TTAGCCGGATATAA-CCACAAGCACAATTGCCTTCGGGTCTTAACCCGGTGTATAGCAACTCGCA
1 TTAGCCGGATA-AAGCAACTAGCACAAATGCCTTCGGGTCTT-AGCCGGTATATAGCAACTCGCA
*
71143890 CAATTCCTTCGGGTC
64 CAATGCCTTCGGGTC
* * *
71143905 TTAGCCGGATATAGCAACTCGCACAAATG-CTTCGGGTCTTAGCCGG-ATATATCAACTCGCACA
1 TTAGCCGGATAAAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCGGTATATAGCAACTCGCAC-
71143968 AATGCCTTCGGGTC
65 AATGCCTTCGGGTC
* * *
71143982 TTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTTACGCCGGTAT
1 TTAG-CCGGAT-AAAGCAACTAGCACAAATGCCTTCGGGTCTTA-GCCGGTAT
71144034 CATTCAAATA
Statistics
Matches: 108, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
76 14 0.13
77 22 0.20
78 29 0.27
79 36 0.33
80 5 0.05
81 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (78 bp):
TTAGCCGGATAAAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCGGTATATAGCAACTCGCACA
ATGCCTTCGGGTC
Found at i:71144035 original size:77 final size:74
Alignment explanation
Indices: 71143881--71144035 Score: 179
Period size: 77 Copynumber: 2.0 Consensus size: 74
71143871 CGGTGTATAG
* * * *
71143881 CAACTCGCACAATTCCTTCGGGTCTTAGCCGGATATAGCAACTCGCACAAATGCTTCGGGTCTTA
1 CAACTCGCACAATGCCTTCGGGTCTTAGCCGGATAAAGCAACTAGCACAAATGCTTCGGGACTTA
71143946 GCCGGATATAT
66 GCCGG--ATAT
* *
71143957 CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGA
1 CAACTCGCAC-AATGCCTTCGGGTCTTAG-CCGGAT-AAAGCAACTAGCACAAATG-CTTCGGGA
71144021 CTTACGCCGG-TAT
62 CTTA-GCCGGATAT
71144034 CA
1 CA
71144036 TTCAAATACT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
76 10 0.15
77 22 0.32
78 17 0.25
79 14 0.21
80 5 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (74 bp):
CAACTCGCACAATGCCTTCGGGTCTTAGCCGGATAAAGCAACTAGCACAAATGCTTCGGGACTTA
GCCGGATAT
Found at i:71148664 original size:40 final size:40
Alignment explanation
Indices: 71148605--71148796 Score: 246
Period size: 40 Copynumber: 4.8 Consensus size: 40
71148595 TATTTGAATG
* * *
71148605 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
71148645 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-CGAGTTGAT
*
71148686 ATATCCGGGCTAAGACCCGAA-GCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
71148725 ATATCCGGGCTAAGACCCGAA-GCAATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTTGTGCGAGTTGAT
* * * *
71148765 ATACCCGCGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
71148797 TTGTGGTTAT
Statistics
Matches: 138, Mismatches: 10, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
39 31 0.22
40 78 0.57
41 26 0.19
42 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:71169298 original size:40 final size:40
Alignment explanation
Indices: 71169253--71169444 Score: 278
Period size: 40 Copynumber: 4.8 Consensus size: 40
71169243 ATAACCACAA
* * *
71169253 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
71169293 GCACAAATTCCTTCGGGTCTTAGCCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
71169333 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
71169373 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
71169413 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
71169445 CATTCAAATA
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.96
41 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:71179164 original size:47 final size:46
Alignment explanation
Indices: 71179105--71179602 Score: 728
Period size: 47 Copynumber: 10.6 Consensus size: 46
71179095 GATAATTGTG
* *
71179105 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGA-TGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAGTGATGA
* *
71179150 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGA
71179197 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGA
* *
71179244 ATATGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGA
71179291 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGA
71179338 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA-GTGATGA
71179387 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA-GTGATGA
71179436 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGA
* *
71179483 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTTATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGA
* * * * * * *
71179530 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTAGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGA-GTGATGA
*
71179577 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
71179603 TCCCGAAGGG
Statistics
Matches: 424, Mismatches: 25, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
45 35 0.08
47 293 0.69
49 96 0.23
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (46 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAGTGATGA
Found at i:71179446 original size:239 final size:235
Alignment explanation
Indices: 71179105--71179602 Score: 806
Period size: 239 Copynumber: 2.1 Consensus size: 235
71179095 GATAATTGTG
71179105 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGATGAATGTGAAAGTGTATATAT
71179168 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
71179233 CGATGTGATGAATATGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
131 CGATGTGATGAATATGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * *
71179298 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
196 AGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGA
71179338 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA--TGATGAATGTGAAAGTG--TAT
* *
71179403 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
62 ATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * * *
71179468 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTTATGAATG
127 TGGCCGATGTGATGAATATGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATG
* * *
71179533 TGAAAGTGTATATATGTGACAGGGCCGAGTAGCCAACGTGATGG
192 TGAAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGA
71179577 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
71179603 TCCCGAAGGG
Statistics
Matches: 245, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
233 5 0.02
234 2 0.01
235 32 0.13
237 27 0.11
238 1 0.00
239 178 0.73
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (235 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
CGATGTGATGAATATGAAAGTGTATATATATGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGA
Found at i:71182789 original size:40 final size:40
Alignment explanation
Indices: 71182744--71182975 Score: 349
Period size: 40 Copynumber: 5.8 Consensus size: 40
71182734 ATAACCACAA
* * *
71182744 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
71182784 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
71182824 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
71182864 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
71182904 GCACAAATGCCTTCGGGTCTTAGCCCAGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
71182944 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
71182976 CATTCAAATG
Statistics
Matches: 180, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 175 0.97
41 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:71186111 original size:5 final size:6
Alignment explanation
Indices: 71186096--71186130 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
71186086 CACTTTACCT
71186096 AAAAAG AAAAAG AAAAAG AAAAAG -AAAAG AAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
71186131 GGGAGAGGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:71187135 original size:44 final size:44
Alignment explanation
Indices: 71187073--71187237 Score: 215
Period size: 44 Copynumber: 3.8 Consensus size: 44
71187063 CAAAGAAACC
* *
71187073 ACAAACCTTATCTCCCTGAAGTTACAGTGGAGCATGTTGAAGTT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
* * * * * **
71187117 ACAAATCTTGTCTTCCTGAAGTTGCAGTAGAGCAAATTGAAGCC
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
* *
71187161 ACAAACCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTT
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
*
71187205 ACAAATCTTATCTCCCTGAA-TTGCAGTGGAGCA
1 ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCA
71187238 GATAGAAACC
Statistics
Matches: 101, Mismatches: 20, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
43 13 0.13
44 88 0.87
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (44 bp):
ACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAAGTTGAAGTT
Found at i:71187223 original size:88 final size:88
Alignment explanation
Indices: 71187071--71187429 Score: 315
Period size: 88 Copynumber: 4.0 Consensus size: 88
71187061 ATCAAAGAAA
* * * *
71187071 CCACAAACCTTATCTCCCTGAAGTTACAGTGGAGCATGTTGAAGTTACAAATCTTGTCTTCCTGA
1 CCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGA
* *
71187136 AGTTGCAGTAGAGCAAATTGAAG
66 AGTTGCAGTGGAGCAGATTGAAG
*
71187159 CCACAAACCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGA
1 CCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGA
* *
71187224 A-TTGCAGTGGAGCAGATAGAAA
66 AGTTGCAGTGGAGCAGATTGAAG
* ** * * * *** * * * *
71187246 CCACTAGTCTCATCTCCCTAAAATTGCAGTGGAGCATACTAAAGATAGCAAATCTCATTTCCCTG
1 CCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAATCTTATCTCCCTG
* *
71187311 AAGTTACAGTGGAACAGATTGAAG
65 AAGTTGCAGTGGAGCAGATTGAAG
* * ** *** * *
71187335 CTACAAGTTACGATTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAACCACTAGTCTTATC
1 CCACAA---AC----CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATC
* * *
71187400 TCCCTGAAGTTGTAGTGGAGTAGACTGAAG
59 TCCCTGAAGTTGCAGTGGAGCAGATTGAAG
71187430 ATAGCAAATC
Statistics
Matches: 213, Mismatches: 49, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
87 52 0.24
88 78 0.37
89 21 0.10
95 32 0.15
96 30 0.14
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (88 bp):
CCACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAATCTTATCTCCCTGA
AGTTGCAGTGGAGCAGATTGAAG
Found at i:71187455 original size:140 final size:139
Alignment explanation
Indices: 71187200--71187455 Score: 377
Period size: 140 Copynumber: 1.8 Consensus size: 139
71187190 GAGCAGGTTG
*
71187200 AAGTTACAAATCTTATCTCCCTGAATTGCAGTGGAGCAGATAGAAACCACTAGTCTCATCTCCCT
1 AAGTTACAAATCTTATCTCCCTGAATTGCAGTGGAGCAGATAAAAACCACTAGTCTCATCTCCCT
* *
71187265 AAAATTGCAGTGGAGCATACTAAAGATAGCAAATCTCATTTCCCTGAAGTTACAGTGGAACAGAT
66 AAAATTGCAGTGGAGCAGACTAAAGATAGCAAATCTCATTTCCCTAAAGTTACAGTGGAACAGAT
71187330 TGAAGCTAC
131 TGAAGCTAC
* * *
71187339 AAGTTACGATTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAACCACTAGTCTTATCTCCC
1 AAGTTACAAATCTTATCTCCCTGAA-TTGCAGTGGAGCAGATAAAAACCACTAGTCTCATCTCCC
* * * * * * **
71187404 TGAAGTTGTAGTGGAGTAGACTGAAGATAGCAAATCTTATTTTTCTAAAGTT
65 TAAAATTGCAGTGGAGCAGACTAAAGATAGCAAATCTCATTTCCCTAAAGTT
71187456 GCAGAGAAGA
Statistics
Matches: 102, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
139 23 0.23
140 79 0.77
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.29
Consensus pattern (139 bp):
AAGTTACAAATCTTATCTCCCTGAATTGCAGTGGAGCAGATAAAAACCACTAGTCTCATCTCCCT
AAAATTGCAGTGGAGCAGACTAAAGATAGCAAATCTCATTTCCCTAAAGTTACAGTGGAACAGAT
TGAAGCTAC
Found at i:71187540 original size:44 final size:44
Alignment explanation
Indices: 71187349--71187540 Score: 145
Period size: 44 Copynumber: 4.3 Consensus size: 44
71187339 AAGTTACGAT
* * * *
71187349 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-AAAAACCACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAAA-TACAAG
* * *
71187393 TCTTATCTCCCTGAAGTTGTAGTGGAGTAGA-CTGAAGATAGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATC-GAAAATA-CAAG
* ** * * * * * *
71187438 TCTTATTTTTCTAAAGTTGCAGAGAAGAAGATTGAAAATACGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAAATACAAG
* * * **
71187482 TCTCATCTCACTGAAGTTGTAGTGGAGTAGATCGAAGCTACAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAAATACAAG
*
71187526 TCTTTTCTCCCTGAA
1 TCTTATCTCCCTGAA
71187541 ATTATATTAG
Statistics
Matches: 109, Mismatches: 35, Indels: 8
0.72 0.23 0.05
Matches are distributed among these distances:
44 75 0.69
45 34 0.31
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATCGAAAATACAAG
Found at i:71189088 original size:23 final size:22
Alignment explanation
Indices: 71189062--71189151 Score: 62
Period size: 22 Copynumber: 4.0 Consensus size: 22
71189052 AAAAACTATT
71189062 TTATTAATTTTAAATT-TTATATA
1 TTATTAATTTTAAATTATT-T-TA
** *
71189085 TTATTTGTTTTAAACTTGTTTTTA
1 TTATTAATTTTAAA-TT-ATTTTA
*
71189109 TATATTAA-TTAAAATTATTTTA
1 T-TATTAATTTTAAATTATTTTA
71189131 TTACTT-ATTTTAAATT-TTTTA
1 TTA-TTAATTTTAAATTATTTTA
71189152 ACTTATTTCG
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
21 8 0.15
22 15 0.28
23 14 0.26
24 10 0.19
25 5 0.09
26 2 0.04
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (22 bp):
TTATTAATTTTAAATTATTTTA
Found at i:71189197 original size:20 final size:21
Alignment explanation
Indices: 71189126--71189199 Score: 59
Period size: 20 Copynumber: 3.7 Consensus size: 21
71189116 ATTAAAATTA
* *
71189126 TTTTATTACTTATTTTAAATT
1 TTTTATTACTTATTTTGACTT
* *
71189147 TTTTA--ACTTATTTCGAACTC
1 TTTTATTACTTATTTTG-ACTT
*
71189167 TTTTA--ATTTATTTTGACTT
1 TTTTATTACTTATTTTGACTT
71189186 TTTTATTA-TTATTT
1 TTTTATTACTTATTT
71189200 ATTCTAATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
19 16 0.37
20 21 0.49
21 6 0.14
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.65
Consensus pattern (21 bp):
TTTTATTACTTATTTTGACTT
Found at i:71189307 original size:27 final size:27
Alignment explanation
Indices: 71189254--71189309 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
71189244 ATTTATACAC
* **
71189254 ATATATTATCTATTTTAAATTTTTTTT
1 ATATATAATCTATTTTAAATTCGTTTT
71189281 ATATATAATCTATTTTTAAA-TCGTTTT
1 ATATATAATCTA-TTTTAAATTCGTTTT
71189308 AT
1 AT
71189310 GCATCATTGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (27 bp):
ATATATAATCTATTTTAAATTCGTTTT
Found at i:71189360 original size:23 final size:23
Alignment explanation
Indices: 71189314--71189360 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
71189304 TTTTATGCAT
* *
71189314 CATTGATTTTAAATCTTTTTTTA
1 CATTGATTTTAAATCATTTATTA
71189337 CATT-ATTTTAAACTCATTTATTA
1 CATTGATTTTAAA-TCATTTATTA
71189360 C
1 C
71189361 CATTTTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.30, C:0.13, G:0.02, T:0.55
Consensus pattern (23 bp):
CATTGATTTTAAATCATTTATTA
Found at i:71192544 original size:18 final size:19
Alignment explanation
Indices: 71192523--71192573 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
71192513 AGTTATAATC
*
71192523 TAAAAAATTCAAAAATTA-
1 TAAAAAATTCAAAAAATAT
**
71192541 TAAAAAATAAAAAAAATAT
1 TAAAAAATTCAAAAAATAT
*
71192560 TTAAAAATTCAAAA
1 TAAAAAATTCAAAA
71192574 TTAAAAACAT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 15 0.58
19 11 0.42
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (19 bp):
TAAAAAATTCAAAAAATAT
Found at i:71192850 original size:19 final size:20
Alignment explanation
Indices: 71192797--71192853 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
71192787 TATTCGTTAA
* *
71192797 AATAATAAAAATATAT-ATT
1 AATATTAAATATATATAATT
* *
71192816 AATATT-AATTTTTATAATT
1 AATATTAAATATATATAATT
71192835 AA-ATTAAATATATATAATT
1 AATATTAAATATATATAATT
71192854 TGTGATTATT
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
18 9 0.30
19 21 0.70
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATATTAAATATATATAATT
Found at i:71193074 original size:16 final size:16
Alignment explanation
Indices: 71193034--71193076 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
71193024 GTATTTTTAA
*
71193034 TTTAATTCAAATAATT
1 TTTAATTAAAATAATT
* *
71193050 TATATATTAAAATATTT
1 TTTA-ATTAAAATAATT
71193067 TTTAATTAAA
1 TTTAATTAAA
71193077 TTTAGTTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (16 bp):
TTTAATTAAAATAATT
Found at i:71195986 original size:3 final size:3
Alignment explanation
Indices: 71195978--71196021 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
71195968 CCTTCAACAT
71195978 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
71196022 TTTTCCTTCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:71197316 original size:21 final size:21
Alignment explanation
Indices: 71197290--71197335 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
71197280 TCCTTTTAAT
71197290 TTTCTTTTATTGTACCACAAA
1 TTTCTTTTATTGTACCACAAA
* * *
71197311 TTTC-TTTCTTGTACTACAAT
1 TTTCTTTTATTGTACCACAAA
71197331 TTTCT
1 TTTCT
71197336 AACAGAGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.54
Consensus pattern (21 bp):
TTTCTTTTATTGTACCACAAA
Found at i:71198584 original size:65 final size:66
Alignment explanation
Indices: 71198502--71198638 Score: 170
Period size: 66 Copynumber: 2.1 Consensus size: 66
71198492 TCATATTTTG
* * * *
71198502 AAGTTGTAGCTGGAGTTCGTC-TATTTTC-TTGTTGCCTCTACTTCCCTCGCTGCTCCCTCCGCT
1 AAGTTGTAGCTGGAGTTCATCATATTTTCATTG-AGCCTCTACTTCCCTCGATACTCCCTCCGCT
71198565 TT
65 TT
* * * * *
71198567 AAGTTGTAGTTGGAGTTCATCATATTTTCATTGAGCCTTTGCTTCTCTCGATACTGCCTCCGCTT
1 AAGTTGTAGCTGGAGTTCATCATATTTTCATTGAGCCTCTACTTCCCTCGATACTCCCTCCGCTT
71198632 T
66 T
71198633 AAGTTG
1 AAGTTG
71198639 AGAAATTTGC
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
65 19 0.31
66 39 0.64
67 3 0.05
ACGTcount: A:0.14, C:0.26, G:0.19, T:0.42
Consensus pattern (66 bp):
AAGTTGTAGCTGGAGTTCATCATATTTTCATTGAGCCTCTACTTCCCTCGATACTCCCTCCGCTT
T
Found at i:71202209 original size:40 final size:40
Alignment explanation
Indices: 71202165--71202252 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 40
71202155 AGGTGCAGGG
* *
71202165 GTCACACGGCCAAGACATATGCCCGTGTGTTAGGCCATGT
1 GTCACACGGCCAAGACACACGCCCGTGTGTTAGGCCATGT
**
71202205 GTCACATACGGCTGAGACACACGCCCGTGTGTTAGGCCATGT
1 GTCAC--ACGGCCAAGACACACGCCCGTGTGTTAGGCCATGT
71202247 GTCACA
1 GTCACA
71202253 TACGGCTGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 6 0.14
42 36 0.86
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (40 bp):
GTCACACGGCCAAGACACACGCCCGTGTGTTAGGCCATGT
Found at i:71203716 original size:40 final size:39
Alignment explanation
Indices: 71203636--71203885 Score: 173
Period size: 40 Copynumber: 6.6 Consensus size: 39
71203626 TGAGCCTAGC
* * *
71203636 TCTAGTTGGATAAACC-A--ATTATATTTGCA-CCCAGT
1 TCTAGTCGGATAAACCGACGATAATAATTGCAGCCCAGT
* *
71203671 ACTAGTCGGATATACCGACGATAATAATTGCAAGCCCAGT
1 TCTAGTCGGATAAACCGACGATAATAATTGC-AGCCCAGT
* * *
71203711 TCTAGTTGGATAAACCAACGAT-AT--TTGCA-CCTAGT
1 TCTAGTCGGATAAACCGACGATAATAATTGCAGCCCAGT
* * * *
71203746 GCTAGTCGGATATACCGACGATAATAATTGTGAGCCCAGC
1 TCTAGTCGGATAAACCGACGATAATAATTG-CAGCCCAGT
* * * *
71203786 TCTAGTTGGATAAACC-A--ACAATATTTGCA-CCTAGT
1 TCTAGTCGGATAAACCGACGATAATAATTGCAGCCCAGT
* * ** * *
71203821 GCTAGTCAGATTTACCGACGATAATAATTGTGAGCCCAGC
1 TCTAGTCGGATAAACCGACGATAATAATTG-CAGCCCAGT
* *
71203861 TCTAGTTGGATAAACCAACGATAAT
1 TCTAGTCGGATAAACCGACGATAAT
71203886 TGCGGCCAAC
Statistics
Matches: 159, Mismatches: 41, Indels: 25
0.71 0.18 0.11
Matches are distributed among these distances:
35 51 0.32
36 6 0.04
37 12 0.08
38 20 0.13
39 6 0.04
40 64 0.40
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (39 bp):
TCTAGTCGGATAAACCGACGATAATAATTGCAGCCCAGT
Found at i:71203902 original size:75 final size:75
Alignment explanation
Indices: 71203624--71203888 Score: 422
Period size: 75 Copynumber: 3.5 Consensus size: 75
71203614 TGATATTGAA
* ** * *
71203624 TGTGAGCCTAGCTCTAGTTGGATAAACCAATTATATTTGCACCCAGTACTAGTCGGATATACCGA
1 TGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGCACCTAGTGCTAGTCGGATATACCGA
71203689 CGATAATAAT
66 CGATAATAAT
** *
71203699 TGCAAGCCCAGTTCTAGTTGGATAAACCAACGATATTTGCACCTAGTGCTAGTCGGATATACCGA
1 TGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGCACCTAGTGCTAGTCGGATATACCGA
71203764 CGATAATAAT
66 CGATAATAAT
* * *
71203774 TGTGAGCCCAGCTCTAGTTGGATAAACCAACAATATTTGCACCTAGTGCTAGTCAGATTTACCGA
1 TGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGCACCTAGTGCTAGTCGGATATACCGA
71203839 CGATAATAAT
66 CGATAATAAT
*
71203849 TGTGAGCCCAGCTCTAGTTGGATAAACCAACGATAATTGC
1 TGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGC
71203889 GGCCAACGCT
Statistics
Matches: 174, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 174 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.28
Consensus pattern (75 bp):
TGTGAGCCCAGCTCTAGTTGGATAAACCAACGATATTTGCACCTAGTGCTAGTCGGATATACCGA
CGATAATAAT
Found at i:71210654 original size:51 final size:51
Alignment explanation
Indices: 71210589--71210704 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 51
71210579 AGTTAGGTCG
* * ***
71210589 CATGTGTAGTACTAAGCA-CAGGCTACTATGCGTACCCGATAGCTTCT-ATCA
1 CATGTGTGGTACTAAG-AGCAGGCCACTATGCGTAAAAGATAGCTT-TGATCA
* *
71210640 CATGTGTGGTACTAAGAGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCA
1 CATGTGTGGTACTAAGAGCAGGCCACTATGCGTAAAAGATAGCTTTGATCA
*
71210691 CAAGTGTGGTACTA
1 CATGTGTGGTACTA
71210705 TGTGAAGGCC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
50 2 0.04
51 53 0.96
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (51 bp):
CATGTGTGGTACTAAGAGCAGGCCACTATGCGTAAAAGATAGCTTTGATCA
Found at i:71210714 original size:51 final size:50
Alignment explanation
Indices: 71210626--71210767 Score: 144
Period size: 51 Copynumber: 2.8 Consensus size: 50
71210616 ATGCGTACCC
* * * * *
71210626 GATAGCTTCTATCACATGTGTGGTACTAAGAGCAGGCCACTATGTGTAA-AA
1 GATAGCTT-TGTCACAAGTGTGGTACTATGTGAAGGCCACTATGTG-AAGAA
*
71210677 GATAGCTTTGGTCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA
1 GATAGCTTT-GTCACAAGTGTGGTACTATGTGAAGGCCACTATGTGAAGAA
* * *
71210728 GGTAGCTTTGACTACAAGGGTGGTACTATGTGCAA-GCCAC
1 GATAGCTTTGTC-ACAAGTGTGGTACTATGTG-AAGGCCAC
71210768 CGGGCATCCG
Statistics
Matches: 78, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
50 5 0.06
51 71 0.91
52 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (50 bp):
GATAGCTTTGTCACAAGTGTGGTACTATGTGAAGGCCACTATGTGAAGAA
Found at i:71222463 original size:46 final size:46
Alignment explanation
Indices: 71222410--71222629 Score: 214
Period size: 48 Copynumber: 4.7 Consensus size: 46
71222400 TATGTGTGCT
*
71222410 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATCGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CA-ATAGTGAGAGCC
* *
71222456 AGTGTAAGACCATGTCTTGGG-CATGGCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTC-TGGGACATGGCATCGGCAAT-AG-TGAGAGCC
* * * * * * *
71222504 AGTGTAAGACCATGTTTGGGACATGGAATTGGCTAT-GAGATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATAGTGA-GAGCC
*
71222550 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG--CA-ATA-GTGAGAGCC
*
71222600 AGTGTAAGACCATGTCTAGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
71222630 AGCCTCGATT
Statistics
Matches: 141, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
45 2 0.01
46 42 0.30
47 16 0.11
48 45 0.32
49 2 0.01
50 32 0.23
51 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAATAGTGAGAGCC
Found at i:71222615 original size:50 final size:48
Alignment explanation
Indices: 71222410--71222726 Score: 199
Period size: 48 Copynumber: 6.6 Consensus size: 48
71222400 TATGTGTGCT
* * **
71222410 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-C-ACATCGTGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATC-GCACTAGATTATGA-AGCC
* * * * *
71222456 AGTGTAAGACCATGTCTTGGGCATGGCATCGGCA-TTGA-GATGAGAGCT
1 AGTGTAAGACCATGTCTAGGACATGGCATC-GCACTAGATTATGA-AGCC
* * * * * * * *
71222504 AGTGTAAGACCATGTTTGGGACATGGAATTG-GCTATGA-GATG-TGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGCACTA-GATTATGAAGCC
*
71222550 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AGATATATGAGAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATC-GCACTAGAT-TATGA-AGCC
* * *
71222600 AGTGTAAGACCATGTCTAGGACATGGCATCAGC-CTCGATTACGATAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATC-GCACTAGATTATGA-AGCC
* * * *
71222649 AATGTAAGACCATGTCTAGGACATGGCATCGAACTTGATGTATGAA-CT
1 AGTGTAAGACCATGTCTAGGACATGGCATCGCACTAGAT-TATGAAGCC
* * *
71222697 AGTGTAAGATCATGTGTGGGACATGGCATC
1 AGTGTAAGACCATGTCTAGGACATGGCATC
71222727 AGCATTCTAC
Statistics
Matches: 216, Mismatches: 40, Indels: 28
0.76 0.14 0.10
Matches are distributed among these distances:
46 39 0.18
47 16 0.07
48 77 0.36
49 44 0.20
50 40 0.19
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGCACTAGATTATGAAGCC
Found at i:71222666 original size:49 final size:50
Alignment explanation
Indices: 71222547--71222730 Score: 180
Period size: 49 Copynumber: 3.7 Consensus size: 50
71222537 TATGAGATGT
* * *
71222547 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATATGAGA
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGATATACGAGA
* * *
71222597 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAGC-CTCGAT-TACGATA
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCAC-AGATATACGAGA
* * * * *
71222646 GTCAATGTAAGACCATGTCTAGGACATGGCATC-GAACTTGATGTATGA-A
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCAC-AGATATACGAGA
* * * *
71222695 CT-AGTGTAAGATCATGTGTGGGACATGGCATCAGCA
1 GTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCA
71222731 TTCTACCCTA
Statistics
Matches: 113, Mismatches: 17, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
48 27 0.24
49 46 0.41
50 40 0.35
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACAGATATACGAGA
Found at i:71222693 original size:99 final size:96
Alignment explanation
Indices: 71222407--71222729 Score: 297
Period size: 94 Copynumber: 3.4 Consensus size: 96
71222397 TGATATGTGT
* * * * *
71222407 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATCGTGA-GAGCCAGTGTAAGACCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCC-TAT-GAGATGAGTCAATGTAAGACCAT
* * *
71222469 GTCTTGGGCATGGCATCGGCATTGA-G-ATGAGA
64 GTCTAGGACATGGCATCGAC-TTGATGTATGAGA
* * * * * *
71222501 GCTAGTGTAAGACCATGTTTGGGACATGGAAT-TGGCTATGAGATGTGTCAGTGTAAGACCATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTATGAGATGAGTCAATGTAAGACCATGT
* * *
71222565 CTGGGACATGGCATCGGCAC-AGATATATGAGA
66 CTAGGACATGGCATC-G-ACTTGATGTATGAGA
* * *
71222597 GCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCCTCGATTACGAT-AGTCAATGTAAGACCA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT--ATGA-GATGAGTCAATGTAAGACCA
71222661 TGTCTAGGACATGGCATCGAACTTGATGTATGA-A
63 TGTCTAGGACATGGCATCG-ACTTGATGTATGAGA
* *
71222695 -CTAGTGTAAGATCATGTGTGGGACATGGCATCAGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
71222730 ATTCTACCCT
Statistics
Matches: 187, Mismatches: 30, Indels: 21
0.79 0.13 0.09
Matches are distributed among these distances:
93 3 0.02
94 47 0.25
95 16 0.09
96 38 0.20
97 34 0.18
98 4 0.02
99 42 0.22
100 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTATGAGATGAGTCAATGTAAGACCATGT
CTAGGACATGGCATCGACTTGATGTATGAGA
Found at i:71226224 original size:24 final size:24
Alignment explanation
Indices: 71226203--71226262 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
71226193 CTGACTGTCC
*
71226203 ATTAAAAATGAAAGCAGTCTGTTG
1 ATTAAAAATGAAAGCAGCCTGTTG
71226227 ATTAAAAATGAAAGCAGCCTGTTG
1 ATTAAAAATGAAAGCAGCCTGTTG
71226251 ATTAAAAATGAA
1 ATTAAAAATGAA
71226263 GACAAACTCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.27
Consensus pattern (24 bp):
ATTAAAAATGAAAGCAGCCTGTTG
Found at i:71227143 original size:30 final size:31
Alignment explanation
Indices: 71227067--71227149 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
71227057 TCAATCTCGA
*
71227067 CATAT-ACTGGGCTGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
71227097 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
71227128 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
71227150 ACTGTAAGCG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:71227397 original size:25 final size:25
Alignment explanation
Indices: 71227369--71227437 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
71227359 CTCTTTTAAT
* *
71227369 AACTGAGGCAAATCCCTTTTTGATA
1 AACTGAGGCAAAGCCCTTTTCGATA
71227394 AACT-AGGGCAAAGCCCTTTTCGATA
1 AACTGA-GGCAAAGCCCTTTTCGATA
* *
71227419 AACTGGGGCATAG-CCTTTT
1 AACTGAGGCAAAGCCCTTTT
71227438 AGCACTTCCT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
24 7 0.18
25 31 0.82
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (25 bp):
AACTGAGGCAAAGCCCTTTTCGATA
Found at i:71228394 original size:27 final size:27
Alignment explanation
Indices: 71228364--71228471 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
71228354 GTAAATCTAC
71228364 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
71228391 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
71228417 AAAAAGCCAAAGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
71228447 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
71228472 ACAAATTGAG
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 39 0.58
28 7 0.10
29 19 0.28
30 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:71228477 original size:27 final size:27
Alignment explanation
Indices: 71228428--71228550 Score: 135
Period size: 27 Copynumber: 4.6 Consensus size: 27
71228418 AAAAGCCAAA
**
71228428 GGTATTTCT-GTAATTTTGTAAATCAGG
1 GGTATTT-TGGTAATTTTACAAATCAGG
*
71228455 GGTATTTTGGTAATTTTACAAAT-TGAG
1 GGTATTTTGGTAATTTTACAAATCAG-G
* * * *
71228482 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAATCAGG
71228509 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTGGTAATTTTACAAATC-AGG
71228536 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
71228551 CTACCCTATA
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
26 3 0.04
27 77 0.95
28 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAATCAGG
Found at i:71228570 original size:54 final size:54
Alignment explanation
Indices: 71228428--71228550 Score: 158
Period size: 54 Copynumber: 2.3 Consensus size: 54
71228418 AAAAGCCAAA
* *** * *
71228428 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATAGAG
*
71228482 GGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAG-G
1 GGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAA-TAGAG
*
71228536 GGTATTTTGGTAATT
1 GGTATTTCGGTAATT
71228551 CTACCCTATA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 58 0.97
55 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (54 bp):
GGTATTTCGGTAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAATAGAG
Found at i:71228612 original size:27 final size:27
Alignment explanation
Indices: 71228582--71228673 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
71228572 ATAATTTCAC
*
71228582 AATCAAGGGTAAAAC-GATAATTTTGTA
1 AATCAAGGGTAAAACAG-TAATTCTGTA
* *
71228609 AATCGAGTGTAAAACAGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
71228636 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
71228663 AATCGAGGGTA
1 AATCAAGGGTA
71228674 CTTTGGTAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 56 0.98
28 1 0.02
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTCTGTA
Found at i:71232918 original size:3 final size:3
Alignment explanation
Indices: 71232912--71232948 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
71232902 TCTAGAAGAA
*
71232912 GAT GAT GAT GAT GAT GAT GAT GAT GAT GGT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
71232949 GTGAATCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.30, C:0.00, G:0.38, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:71237841 original size:16 final size:15
Alignment explanation
Indices: 71237822--71237866 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
71237812 AGTTATCGAA
71237822 AAAAGTACAAAAAAAT
1 AAAA-TACAAAAAAAT
71237838 AAAATACGAAAAAAAT
1 AAAATAC-AAAAAAAT
71237854 AGAAATA-AAAAAA
1 A-AAATACAAAAAA
71237867 TATTCTATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 9 0.33
16 13 0.48
17 5 0.19
ACGTcount: A:0.78, C:0.04, G:0.07, T:0.11
Consensus pattern (15 bp):
AAAATACAAAAAAAT
Found at i:71237847 original size:26 final size:25
Alignment explanation
Indices: 71237818--71237868 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
71237808 AAAAAGTTAT
*
71237818 CGAAAAAAGTACAAAAAAATAAAATA
1 CGAAAAAAATACAAAAAAA-AAAATA
* *
71237844 CGAAAAAAATAGAAATAAAAAAATA
1 CGAAAAAAATACAAAAAAAAAAATA
71237869 TTCTATGGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.75, C:0.06, G:0.08, T:0.12
Consensus pattern (25 bp):
CGAAAAAAATACAAAAAAAAAAATA
Found at i:71241925 original size:12 final size:12
Alignment explanation
Indices: 71241902--71241937 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
71241892 AAAAGGATAA
71241902 GAAATG-GAAAT
1 GAAATGTGAAAT
71241913 GAAATGTGAAAT
1 GAAATGTGAAAT
*
71241925 GAAATATGAAAT
1 GAAATGTGAAAT
71241937 G
1 G
71241938 GTCGATTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.53, C:0.00, G:0.25, T:0.22
Consensus pattern (12 bp):
GAAATGTGAAAT
Found at i:71246070 original size:47 final size:48
Alignment explanation
Indices: 71246000--71246223 Score: 225
Period size: 47 Copynumber: 4.8 Consensus size: 48
71245990 GGGTAAGGTA
*
71246000 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCA-AG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCATAG
* *
71246047 TCGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCATAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCATAG
* * * * **
71246095 CCGAT-TCATGTCCCAGTCAT-GTCTTACACTAGCTTACGTCTCA-AGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCATA-G
* * *
71246141 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTATC-GATA-
1 CCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATATCTCATAG
71246187 CCGATGCCATG-CCCTAGACATGGTCTTACACTGGCTC
1 CCGATGCCATGTCCC-AGACATGGTCTTACACTGGCTC
71246224 TCATAATGTG
Statistics
Matches: 147, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
45 1 0.01
46 60 0.41
47 65 0.44
48 21 0.14
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCATAG
Found at i:71246137 original size:46 final size:46
Alignment explanation
Indices: 71246000--71246268 Score: 194
Period size: 46 Copynumber: 5.7 Consensus size: 46
71245990 GGGTAAGGTA
* *
71246000 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCAT-ATCTCAA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-ATCATCTCAAGG
*
71246047 TCGATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCATA-G
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTATCATCTCA-AGG
* * *
71246095 CCGATTCATGTCCCAGTCATGTCTTACACTAGCT-TACGTCTCAAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTAT-CATCTCAAGG
* * * **
71246141 CCGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCGTATCGATA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTA-TCATCTCAAGG
* * * **
71246187 CCGATGCCATG-CCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CCGATG-CATGTCCC-AGACAT-GTCTTACACTAGCTATCAT-CTCAAGG
* * *
71246235 CCAATACATGTCCTAGACATGTCTTACACTAGCT
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCT
71246269 CACAATAACC
Statistics
Matches: 186, Mismatches: 22, Indels: 29
0.78 0.09 0.12
Matches are distributed among these distances:
45 2 0.01
46 81 0.44
47 73 0.39
48 28 0.15
49 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATCTCAAGG
Found at i:71250910 original size:44 final size:42
Alignment explanation
Indices: 71250808--71250920 Score: 113
Period size: 42 Copynumber: 2.6 Consensus size: 42
71250798 TCATACATCA
* *
71250808 ATGCC-ACTATCCCAGACAGGGTCTTACACAAAATCAGATATG
1 ATGCCAAC-ATCCCAGACATGGTCTTACACAAAAACAGATATG
** *
71250850 ATGCTGACATTCCAGACATGGTCTTACACATAAAACAGA-ACTCG
1 ATGCCAACATCCCAGACATGGTCTTACACA-AAAACAGATA-T-G
* *
71250894 ATGCCAACGTCCCAGACGTGGTCTTAC
1 ATGCCAACATCCCAGACATGGTCTTAC
71250921 CTGAAATCCT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 25 0.43
43 10 0.17
44 23 0.40
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAACATCCCAGACATGGTCTTACACAAAAACAGATATG
Found at i:71253473 original size:48 final size:47
Alignment explanation
Indices: 71253406--71253587 Score: 203
Period size: 48 Copynumber: 3.9 Consensus size: 47
71253396 CACATGGTAG
* *
71253406 GATGCTAATGCCATATCCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAA-GCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * *
71253454 TATGCCAATGCTATGTCCCAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAA-GCCATATCCCAGACATGGTCTTACATGGGATCACATATC
* * ** *
71253502 GATGCC--G--ATAACCCAG-CTATGGTCTTACACGAAATTACATATC
1 GATGCCAAGCCATATCCCAGAC-ATGGTCTTACATGGGATCACATATC
*
71253545 GATGCCAAGCCATGTCCCAGACATGGTCTTACATGGGATCACA
1 GATGCCAAGCCATATCCCAGACATGGTCTTACATGGGATCACA
71253588 CAAAACCCTA
Statistics
Matches: 110, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
42 1 0.01
43 34 0.31
45 2 0.02
47 24 0.22
48 49 0.45
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (47 bp):
GATGCCAAGCCATATCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:71253581 original size:90 final size:90
Alignment explanation
Indices: 71253413--71253587 Score: 262
Period size: 90 Copynumber: 1.9 Consensus size: 90
71253403 TAGGATGCTA
* * ** * *
71253413 ATGCCATATCCCAGATATGGTCTTACATGGGATCACATATCTATGCCAATGCTATGTCCCAGACA
1 ATGCCATAACCCAGATATGGTCTTACACGAAATCACATATCGATGCCAATGCCATGTCCCAGACA
71253478 TGGTCTTACATGGGATCACATATCG
66 TGGTCTTACATGGGATCACATATCG
* *
71253503 ATGCCGATAACCCAGCTATGGTCTTACACGAAATTACATATCGATGCCAA-GCCATGTCCCAGAC
1 ATGCC-ATAACCCAGATATGGTCTTACACGAAATCACATATCGATGCCAATGCCATGTCCCAGAC
71253567 ATGGTCTTACATGGGATCACA
65 ATGGTCTTACATGGGATCACA
71253588 CAAAACCCTA
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
90 39 0.51
91 37 0.49
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (90 bp):
ATGCCATAACCCAGATATGGTCTTACACGAAATCACATATCGATGCCAATGCCATGTCCCAGACA
TGGTCTTACATGGGATCACATATCG
Found at i:71255288 original size:187 final size:186
Alignment explanation
Indices: 71254974--71255328 Score: 665
Period size: 187 Copynumber: 1.9 Consensus size: 186
71254964 AATAAGTTAT
71254974 AATAAATTTGTAACGACCTAAAAGTCAGTGGTATTGGAAATGCAGTTTCGAGACCCCGTTTCTAT
1 AATAAATTTGTAACGACCTAAAAGTCAGTGGTATTGGAAATGCAGTTTCGAGACCCCGTTTCTAT
71255039 AAACTAAGCCCGTAAATATTTTTTGTTAAATATTTACGGAGTTATAGTACAGATGAATGAATTTT
66 AAACTAAGCCCGTAAATATTTTTTGTTAAATATTTACGGAGTTATAGTACAGATGAATGAATTTT
71255104 GAATAGGTAATTTTGTGAAATTAGTGACTAATCAAGGTACAAGGATTAAATCATAA
131 GAATAGGTAATTTTGTGAAATTAGTGACTAATCAAGGTACAAGGATTAAATCATAA
* * *
71255160 AATAAATTTGTAACGACCTGAAAGTCAGTGGTATTGGAAAATGCAGTTTTGAGACCCCGTTTCTG
1 AATAAATTTGTAACGACCTAAAAGTCAGTGGTATTGG-AAATGCAGTTTCGAGACCCCGTTTCTA
*
71255225 TAAACTAAGCCCGTAAATATTTTTTGTTAAATATTTACGGAGTTATTGTACAGATGAATGAATTT
65 TAAACTAAGCCCGTAAATATTTTTTGTTAAATATTTACGGAGTTATAGTACAGATGAATGAATTT
71255290 TGAATAGGTAATTTTGTGAAATTAGTGACTAATCAAGGT
130 TGAATAGGTAATTTTGTGAAATTAGTGACTAATCAAGGT
71255329 GTGACACCCC
Statistics
Matches: 164, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
186 36 0.22
187 128 0.78
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.34
Consensus pattern (186 bp):
AATAAATTTGTAACGACCTAAAAGTCAGTGGTATTGGAAATGCAGTTTCGAGACCCCGTTTCTAT
AAACTAAGCCCGTAAATATTTTTTGTTAAATATTTACGGAGTTATAGTACAGATGAATGAATTTT
GAATAGGTAATTTTGTGAAATTAGTGACTAATCAAGGTACAAGGATTAAATCATAA
Found at i:71257656 original size:47 final size:47
Alignment explanation
Indices: 71257595--71258179 Score: 990
Period size: 47 Copynumber: 12.4 Consensus size: 47
71257585 CAGCCAAGAC
71257595 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
71257642 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
71257689 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
71257736 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
71257783 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
71257832 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
71257879 AGTGTATATATGTGATAAGGCCTAATAGCTGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
71257926 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
71257973 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
71258020 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
71258067 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
71258114 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
71258161 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
71258180 TCCCGAAGGG
Statistics
Matches: 513, Mismatches: 23, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 466 0.91
49 47 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:71264257 original size:27 final size:27
Alignment explanation
Indices: 71264227--71264325 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
71264217 TTTAATTTAC
*
71264227 TAAAATTACCGAAATATCCTTAG-TTTG
1 TAAAATTACCGAAATA-CCTTCGATTTG
* * *
71264254 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCTTCGATTTG
** *
71264281 TAAAATTACTAAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTCGATTTG
71264308 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
71264326 CCCGATTTAC
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 54 0.89
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTCGATTTG
Found at i:71264352 original size:27 final size:27
Alignment explanation
Indices: 71264322--71264532 Score: 242
Period size: 27 Copynumber: 7.8 Consensus size: 27
71264312 ATTACCAAAG
*
71264322 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * * *
71264349 TACCCCCAATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
71264376 TACCCCCGATTTACATAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
71264403 TACTCTCGACTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
71264430 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
71264457 TATCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
71264484 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
71264511 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
71264533 TAAAAAACCC
Statistics
Matches: 164, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 164 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:71264542 original size:27 final size:27
Alignment explanation
Indices: 71264484--71264814 Score: 174
Period size: 27 Copynumber: 12.2 Consensus size: 27
71264474 ATTACTGTTT
* * * ***
71264484 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTGTAAAATTACTAAAA
**
71264511 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* * *
71264538 AACCCTAG-TCTGTAAAATTACTAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
* *
71264564 TACCCTTGGTTTGTAAAATTAC-AGAAA
1 TACCCTCGATTTGTAAAATTACTA-AAA
* *
71264591 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
*
71264618 TACCC-CTAGTTTGTAAAATTACTAAAA
1 TACCCTCGA-TTTGTAAAATTACTAAAA
* * * * *
71264645 TACCATTGGTTTGTGAAATTA-TCGAAA
1 TACCCTCGATTTGTAAAATTACT-AAAA
** *
71264672 TACCCTTAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
** *
71264699 TACCC-CTGATTTACAAAGTTAC-AGAAA
1 TACCCTC-GATTTGTAAAATTACTA-AAA
* *
71264726 TACCCTTGACTTTCTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTGT-AAAATTACTA-AAA
* ** *
71264755 TACCACTAG-TTTACAAAATTACTGAAA
1 TACC-CTCGATTTGTAAAATTACTAAAA
* * * * *
71264782 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTCGATTTGTAAAATTACTAAAA
*
71264809 CACCCT
1 TACCCT
71264815 TGTGGGGTGA
Statistics
Matches: 236, Mismatches: 52, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
26 29 0.12
27 181 0.77
28 8 0.03
29 15 0.06
30 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACTAAAA
Found at i:71264654 original size:81 final size:81
Alignment explanation
Indices: 71264511--71264705 Score: 286
Period size: 81 Copynumber: 2.4 Consensus size: 81
71264501 ATTACTATTT
* ** * * *
71264511 TACCCTCGATTTACAAAATTACTAAAA-AACCCTAGTCTGTAAAATTACTAAAATACCCTTGGTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACTAAAATACCATTGGTT
71264575 TGTAAAATTA-CAGAAA
66 TGTAAAATTATC-GAAA
*
71264591 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCATTGGTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACTAAAATACCATTGGTT
*
71264656 TGTGAAATTATCGAAA
66 TGTAAAATTATCGAAA
*
71264672 TACCCTTAATTTGTAAAATTACCAAAATACCCCT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
71264706 GATTTACAAA
Statistics
Matches: 104, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
80 23 0.22
81 80 0.77
82 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (81 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTCTGTAAAATTACTAAAATACCATTGGTT
TGTAAAATTATCGAAA
Found at i:71264727 original size:81 final size:81
Alignment explanation
Indices: 71264511--71264758 Score: 274
Period size: 81 Copynumber: 3.0 Consensus size: 81
71264501 ATTACTATTT
* ** * * *
71264511 TACCCTCGATTTACAAAATTACTAAAA-AACCCTAG-TCTGTAAAATTACTAAAATACCCTTGGT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGAT-TGTAAAATTACTAAAATACCATTGGT
71264574 TTGTAAAATTACAGAAA
65 TTGTAAAATTACAGAAA
*
71264591 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCATTGGTT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACTAAAATACCATTGGTT
*
71264656 TGTGAAATTATC-GAAA
66 TGTAAAATTA-CAGAAA
* *
71264672 TACCCTTAATTTGTAAAATTACCAAAATACCCCT-GATT-TACAAAGTTAC-AGAAATACCCTTG
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTA-AAA-TTACTA-AAATACCATTG
* * *
71264734 ACTTTCTAAAAATTATAGAAA
63 -GTTTGT-AAAATTACAGAAA
71264755 TACC
1 TACC
71264759 ACTAGTTTAC
Statistics
Matches: 145, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
79 2 0.01
80 30 0.21
81 93 0.64
82 6 0.04
83 14 0.10
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGATTGTAAAATTACTAAAATACCATTGGTT
TGTAAAATTACAGAAA
Found at i:71266074 original size:25 final size:25
Alignment explanation
Indices: 71266045--71266092 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
71266035 TTATAACATG
* *
71266045 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
71266070 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
71266093 GTTTATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:71266154 original size:20 final size:20
Alignment explanation
Indices: 71266129--71266239 Score: 186
Period size: 20 Copynumber: 5.5 Consensus size: 20
71266119 ATTTTAATAA
71266129 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
71266149 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
71266169 ATATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
71266189 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
71266209 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
71266229 ACATGAGATGT
1 ACATGATATGT
71266240 TCATAAATGC
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 84 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.