Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 212 of 345
Found at i:71971470 original size:28 final size:28
Alignment explanation
Indices: 71971415--71971558 Score: 168
Period size: 28 Copynumber: 5.2 Consensus size: 28
71971405 AGCATGGCTG
* * *
71971415 CCAG-AACAGATA-TTGTGACTGAGTCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
* *
71971441 CCAGATACAGATAATTGTGGCA-AGGCCA
1 CCAGAAACAGATATTTGTGGCAGA-GCCA
* *
71971469 CCAGAAATAGATATTTGTAGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
*
71971497 CCAGAAACAGATATTTATGGCAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
* *
71971525 CCAGAAAGAGATATTTGTGGTAGAGCCA
1 CCAGAAACAGATATTTGTGGCAGAGCCA
71971553 CCAGAA
1 CCAGAA
71971559 CGCTTCCTCC
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 4 0.04
27 8 0.08
28 87 0.87
29 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (28 bp):
CCAGAAACAGATATTTGTGGCAGAGCCA
Found at i:71990079 original size:30 final size:30
Alignment explanation
Indices: 71990045--71990145 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 30
71990035 GACCTGAATG
*
71990045 CATGTTTGACTGTTACTATTTACTGCATGC
1 CATGTTTGACTATTACTATTTACTGCATGC
* *
71990075 CATG-TT-ATTATTATCTGATAAGGTTGACCTGAATG-
1 CATGTTTGACTATTA-CT-AT----TT-A-CTGCATGC
71990110 CATGTTTGACTATTACTATTTACTGCATGC
1 CATGTTTGACTATTACTATTTACTGCATGC
71990140 CATGTT
1 CATGTT
71990146 ATTATTATCC
Statistics
Matches: 55, Mismatches: 5, Indels: 22
0.67 0.06 0.27
Matches are distributed among these distances:
28 5 0.09
29 10 0.18
30 13 0.24
31 2 0.04
34 2 0.04
35 7 0.13
36 10 0.18
37 6 0.11
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.43
Consensus pattern (30 bp):
CATGTTTGACTATTACTATTTACTGCATGC
Found at i:71990132 original size:65 final size:65
Alignment explanation
Indices: 71990028--71990154 Score: 245
Period size: 65 Copynumber: 2.0 Consensus size: 65
71990018 CCCCTAGGGT
*
71990028 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
71990093 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATC
1 TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATC
71990155 CGATGCATGG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTATTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:71994288 original size:65 final size:65
Alignment explanation
Indices: 71994184--71994314 Score: 208
Period size: 65 Copynumber: 2.0 Consensus size: 65
71994174 CCCCTAAGGT
* ** *
71994184 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCAAGCCATGTTATTATTATCTGA
1 TAAGGTTGACCCGAATGCATGTTTGACAATTACTATTTACTACAAGCCATGTTATTATTATCTGA
* *
71994249 TAAGGTTGACCCGAATGCATGTTTGACAATTACTATTTACTACATGCGATGTTATTATTATCTGA
1 TAAGGTTGACCCGAATGCATGTTTGACAATTACTATTTACTACAAGCCATGTTATTATTATCTGA
71994314 T
1 T
71994315 GCATGGGACT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 60 1.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (65 bp):
TAAGGTTGACCCGAATGCATGTTTGACAATTACTATTTACTACAAGCCATGTTATTATTATCTGA
Found at i:71994771 original size:249 final size:249
Alignment explanation
Indices: 71994333--71994831 Score: 998
Period size: 249 Copynumber: 2.0 Consensus size: 249
71994323 CTGGGTTATT
71994333 GATGGAGGAAGTACTGAAAGTGGCTTGACCACATACTGGAGGCTTTGCCTCAACTTACTGATATC
1 GATGGAGGAAGTACTGAAAGTGGCTTGACCACATACTGGAGGCTTTGCCTCAACTTACTGATATC
71994398 TAAGCAGCAATGCTGCAACTGTGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCCCCACATGGAGT
66 TAAGCAGCAATGCTGCAACTGTGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCCCCACATGGAGT
71994463 GTAGGGCTAGTACGGGTGGAGTGTAGCGGTTGGTTATAGGCTGGGTTGGGCTTGCATACACGAAT
131 GTAGGGCTAGTACGGGTGGAGTGTAGCGGTTGGTTATAGGCTGGGTTGGGCTTGCATACACGAAT
71994528 ATGTCTGTTCTGTTCTGGAATGGGCCTATGGGCCATACTGTTAACTGAAAAAGG
196 ATGTCTGTTCTGTTCTGGAATGGGCCTATGGGCCATACTGTTAACTGAAAAAGG
71994582 GATGGAGGAAGTACTGAAAGTGGCTTGACCACATACTGGAGGCTTTGCCTCAACTTACTGATATC
1 GATGGAGGAAGTACTGAAAGTGGCTTGACCACATACTGGAGGCTTTGCCTCAACTTACTGATATC
71994647 TAAGCAGCAATGCTGCAACTGTGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCCCCACATGGAGT
66 TAAGCAGCAATGCTGCAACTGTGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCCCCACATGGAGT
71994712 GTAGGGCTAGTACGGGTGGAGTGTAGCGGTTGGTTATAGGCTGGGTTGGGCTTGCATACACGAAT
131 GTAGGGCTAGTACGGGTGGAGTGTAGCGGTTGGTTATAGGCTGGGTTGGGCTTGCATACACGAAT
71994777 ATGTCTGTTCTGTTCTGGAATGGGCCTATGGGCCATACTGTTAACTGAAAAAGG
196 ATGTCTGTTCTGTTCTGGAATGGGCCTATGGGCCATACTGTTAACTGAAAAAGG
71994831 G
1 G
71994832 CTAAGGCCCA
Statistics
Matches: 250, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
249 250 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.27
Consensus pattern (249 bp):
GATGGAGGAAGTACTGAAAGTGGCTTGACCACATACTGGAGGCTTTGCCTCAACTTACTGATATC
TAAGCAGCAATGCTGCAACTGTGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCCCCACATGGAGT
GTAGGGCTAGTACGGGTGGAGTGTAGCGGTTGGTTATAGGCTGGGTTGGGCTTGCATACACGAAT
ATGTCTGTTCTGTTCTGGAATGGGCCTATGGGCCATACTGTTAACTGAAAAAGG
Found at i:71997493 original size:40 final size:40
Alignment explanation
Indices: 71997438--71997515 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
71997428 TGCAACGAGA
71997438 ATGTCAAAGTTGTGAAAGACTATGGTATGCTGTAAATTGG
1 ATGTCAAAGTTGTGAAAGACTATGGTATGCTGTAAATTGG
*
71997478 ATGTCAAAGTTGTGAAAGACTATGGTATGTTGTAAATT
1 ATGTCAAAGTTGTGAAAGACTATGGTATGCTGTAAATT
71997516 TGTATAGGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.33, C:0.06, G:0.26, T:0.35
Consensus pattern (40 bp):
ATGTCAAAGTTGTGAAAGACTATGGTATGCTGTAAATTGG
Found at i:72004534 original size:31 final size:31
Alignment explanation
Indices: 72004499--72004560 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
72004489 CTCCAGTATG
*
72004499 GGCAGGTCATGTGGTCACACACGCCCGTGTC
1 GGCAGGTCATGTGGTCACACACACCCGTGTC
72004530 GGCAGGTCATGTGGTCACACACACCCGTGTC
1 GGCAGGTCATGTGGTCACACACACCCGTGTC
72004561 CCTAACCCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (31 bp):
GGCAGGTCATGTGGTCACACACACCCGTGTC
Found at i:72004757 original size:12 final size:12
Alignment explanation
Indices: 72004740--72004768 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
72004730 CAGAGACACA
72004740 TGCCCGTGTCTC
1 TGCCCGTGTCTC
72004752 TGCCCGTGTCTC
1 TGCCCGTGTCTC
72004764 TGCCC
1 TGCCC
72004769 ATGTGATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.45, G:0.24, T:0.31
Consensus pattern (12 bp):
TGCCCGTGTCTC
Found at i:72007432 original size:27 final size:28
Alignment explanation
Indices: 72007348--72007445 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
72007338 CATGAGATTG
* * * *
72007348 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
72007377 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
72007405 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
72007432 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
72007446 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:72007456 original size:27 final size:27
Alignment explanation
Indices: 72007376--72007458 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
72007366 TAAATTGTAC
* *
72007376 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
72007404 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
72007431 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
72007458 A
1 A
72007459 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:72007459 original size:29 final size:27
Alignment explanation
Indices: 72007348--72007459 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
72007338 CATGAGATTG
** * *
72007348 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
72007377 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
72007405 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
72007432 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
72007460 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:72009872 original size:23 final size:23
Alignment explanation
Indices: 72009829--72009872 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
72009819 CATCATAATA
*
72009829 TCATCTATTTCATATCACAAAAC
1 TCATCTATATCATATCACAAAAC
*
72009852 TCATC-ATATCATCATCTCAAA
1 TCATCTATATCAT-ATCACAAA
72009873 CCAAACCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (23 bp):
TCATCTATATCATATCACAAAAC
Found at i:72011732 original size:20 final size:21
Alignment explanation
Indices: 72011702--72011744 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
72011692 TTAAAATAAT
*
72011702 TTTTCGACCTCGGAGTTGTGG
1 TTTTCGACCTCAGAGTTGTGG
72011723 TTTT-GACCTCAGAGTTGTGG
1 TTTTCGACCTCAGAGTTGTGG
72011743 TT
1 TT
72011745 CTGAAACCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 17 0.81
21 4 0.19
ACGTcount: A:0.12, C:0.16, G:0.30, T:0.42
Consensus pattern (21 bp):
TTTTCGACCTCAGAGTTGTGG
Found at i:72014718 original size:45 final size:44
Alignment explanation
Indices: 72014661--72014913 Score: 309
Period size: 43 Copynumber: 5.8 Consensus size: 44
72014651 GTACTATTCT
* * * * * *
72014661 GGCCTTTGAGCCTAGCAGGCTATGATGCTGGTGAGATACTATTCA
1 GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA-TCG
* * *
72014706 GGCCTTCAAGCCTAGCAGGCTATAATGCCGGTGAGATATTATTCG
1 GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA-TCG
* *
72014751 GGCCTTCGAGACTAGCAGGCTATAATGTCGGTGAAATAATATCG
1 GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCG
* *
72014795 GGCC-TCAAGCCTAGCAGGCTATAATACCGGTGAAATAATATCG
1 GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCG
*
72014838 GGCC-TCGAGCCTAGCAAGCTATAATGCCGGTGAAATAATATCG
1 GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCG
*
72014881 GG-CTTCGAGCCTAGCAGAG-GA-AATGCCGGTGAA
1 GGCCTTCGAGCCTAGCAG-GCTATAATGCCGGTGAA
72014914 TGAATTCAGA
Statistics
Matches: 186, Mismatches: 20, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
42 13 0.07
43 90 0.48
44 8 0.04
45 75 0.40
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (44 bp):
GGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATATCG
Found at i:72016866 original size:11 final size:11
Alignment explanation
Indices: 72016850--72016883 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
72016840 GAGCAAGTTA
72016850 TATGTTTTTAT
1 TATGTTTTTAT
72016861 TATGTTTTTACT
1 TATGTTTTTA-T
72016873 TA-GTTTTTAT
1 TATGTTTTTAT
72016883 T
1 T
72016884 TTTAGCTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 2 0.09
11 17 0.77
12 3 0.14
ACGTcount: A:0.18, C:0.03, G:0.09, T:0.71
Consensus pattern (11 bp):
TATGTTTTTAT
Found at i:72017151 original size:22 final size:22
Alignment explanation
Indices: 72017107--72017151 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
72017097 GACCAAGCTA
* *
72017107 CAAGCGTATCATGATATCCCCT
1 CAAGCGTATAATGATACCCCCT
72017129 CAAG-GTATAATGATACCCACCT
1 CAAGCGTATAATGATACCC-CCT
72017151 C
1 C
72017152 GTGACAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.24
Consensus pattern (22 bp):
CAAGCGTATAATGATACCCCCT
Found at i:72019059 original size:46 final size:46
Alignment explanation
Indices: 72019009--72019180 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
72018999 TGGTTGAGCA
*
72019009 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
72019055 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
*
72019102 TCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
72019147 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72019181 GGGGCGGGTT
Statistics
Matches: 101, Mismatches: 17, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
43 5 0.05
45 7 0.07
46 78 0.77
47 7 0.07
49 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:72019174 original size:92 final size:93
Alignment explanation
Indices: 72019006--72019175 Score: 281
Period size: 92 Copynumber: 1.8 Consensus size: 93
72018996 GGATGGTTGA
* *
72019006 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
72019071 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCTGAGTTCGTGAAATGTAACTAG
* *
72019099 GCATCCG-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCCAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
72019163 TGAGT-TCGAGTTC
66 TGAGTCT-GAGTTC
72019176 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
91 1 0.01
92 64 0.89
93 7 0.10
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAAATGTAACTAG
Found at i:72036948 original size:10 final size:9
Alignment explanation
Indices: 72036935--72036982 Score: 53
Period size: 10 Copynumber: 5.1 Consensus size: 9
72036925 TAAAAAAAAT
72036935 AATTATAAGA
1 AATTATAA-A
72036945 AATTATAAA
1 AATTATAAA
*
72036954 TAATT-TTAA
1 -AATTATAAA
72036963 AATTATTAAA
1 AATTA-TAAA
72036973 AATTATAAA
1 AATTATAAA
72036982 A
1 A
72036983 CACATATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
8 4 0.12
9 9 0.27
10 20 0.61
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (9 bp):
AATTATAAA
Found at i:72036967 original size:18 final size:18
Alignment explanation
Indices: 72036944--72036982 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
72036934 TAATTATAAG
*
72036944 AAATTA-TAAATAATTTTA
1 AAATTATTAAA-AATTATA
72036962 AAATTATTAAAAATTATA
1 AAATTATTAAAAATTATA
72036980 AAA
1 AAA
72036983 CACATATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATTATTAAAAATTATA
Found at i:72037640 original size:18 final size:18
Alignment explanation
Indices: 72037613--72037652 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
72037603 ATTTTTTTTC
**
72037613 AAAA-ATTAAAACTTATT
1 AAAATATTAAAAAATATT
72037630 AAAATATTAAAAAATATT
1 AAAATATTAAAAAATATT
72037648 AAAAT
1 AAAAT
72037653 TGATATAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAATATTAAAAAATATT
Found at i:72037686 original size:20 final size:20
Alignment explanation
Indices: 72037620--72037845 Score: 67
Period size: 20 Copynumber: 11.4 Consensus size: 20
72037610 TTCAAAAATT
* * *
72037620 AAAACTTATTAAAA-TATTA
1 AAAAATTATAAAAATTATAA
*
72037639 AAAAA-TATTAAAATTGAT-A
1 AAAAATTATAAAAATT-ATAA
* *
72037658 TAAACTTATAAAAATTATAA
1 AAAAATTATAAAAATTATAA
**
72037678 AAAAATTATAAGTATTATAA
1 AAAAATTATAAAAATTATAA
* * *
72037698 AAATA-TATAATAAATTCT-C
1 AAAAATTATAA-AAATTATAA
* ** * *
72037717 AAAAATCAT-AATTTTTTTA
1 AAAAATTATAAAAATTATAA
* *
72037736 TAAAATTAATAAAACATT-T-T
1 AAAAATT-ATAAAA-ATTATAA
* * * * *
72037756 TAAAATTTTTAAAATTTTAT
1 AAAAATTATAAAAATTATAA
* *
72037776 AAAAATGTATTAAAATTCTATA
1 AAAAAT-TATAAAAATTATA-A
72037798 AAAAATTA-AAAAA-TATAA
1 AAAAATTATAAAAATTATAA
*
72037816 AAAAATATATAAGATATTATAA
1 AAAAAT-TATAA-AAATTATAA
*
72037838 AAATATTA
1 AAAAATTA
72037846 AAATTGATAT
Statistics
Matches: 155, Mismatches: 34, Indels: 34
0.70 0.15 0.15
Matches are distributed among these distances:
18 22 0.14
19 36 0.23
20 59 0.38
21 20 0.13
22 18 0.12
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (20 bp):
AAAAATTATAAAAATTATAA
Found at i:72037778 original size:10 final size:10
Alignment explanation
Indices: 72037731--72037800 Score: 56
Period size: 10 Copynumber: 7.0 Consensus size: 10
72037721 ATCATAATTT
72037731 TTTTATAAAA
1 TTTTATAAAA
*
72037741 -TTAATAAAACA
1 TTTTAT-AAA-A
72037752 TTTT-TAAAA
1 TTTTATAAAA
72037761 TTTT-TAAAA
1 TTTTATAAAA
72037770 TTTTATAAAA
1 TTTTATAAAA
* *
72037780 ATGTATTAAAA
1 TTTTA-TAAAA
*
72037791 TTCTATAAAA
1 TTTTATAAAA
72037801 AATTAAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
9 18 0.37
10 19 0.39
11 10 0.20
12 2 0.04
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (10 bp):
TTTTATAAAA
Found at i:72037845 original size:11 final size:11
Alignment explanation
Indices: 72037766--72037845 Score: 57
Period size: 10 Copynumber: 7.8 Consensus size: 11
72037756 TAAAATTTTT
*
72037766 AAAATTTTATA
1 AAAATATTATA
* *
72037777 AAAAT-GTATT
1 AAAATATTATA
72037787 AAAAT-TCTATA
1 AAAATAT-TATA
72037798 AAAA-ATTA-A
1 AAAATATTATA
*
72037807 AAAATA-TAAA
1 AAAATATTATA
72037817 AAAATA-TAT-
1 AAAATATTATA
*
72037826 AAGATATTATA
1 AAAATATTATA
72037837 AAAATATTA
1 AAAATATTA
72037846 AAATTGATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
9 12 0.21
10 23 0.41
11 21 0.38
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (11 bp):
AAAATATTATA
Found at i:72039386 original size:17 final size:18
Alignment explanation
Indices: 72039344--72039388 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
72039334 TAAAGTAAAA
72039344 TGGGCCCACATGCTTGTG
1 TGGGCCCACATGCTTGTG
72039362 TGGGCCCACATGCCTT-TG
1 TGGGCCCACATG-CTTGTG
72039380 T-GGCCCACA
1 TGGGCCCACA
72039389 CACTTAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.31
18 15 0.58
19 3 0.12
ACGTcount: A:0.13, C:0.33, G:0.29, T:0.24
Consensus pattern (18 bp):
TGGGCCCACATGCTTGTG
Found at i:72047642 original size:10 final size:10
Alignment explanation
Indices: 72047629--72047709 Score: 58
Period size: 10 Copynumber: 8.2 Consensus size: 10
72047619 TCTATGAATT
72047629 TTTTTTATAA
1 TTTTTTATAA
72047639 -TTTTTATAA
1 TTTTTTATAA
* * *
72047648 GTTTATATGA
1 TTTTTTATAA
* *
72047658 GTTTTAAT-A
1 TTTTTTATAA
*
72047667 TTTTTTATAG
1 TTTTTTATAA
*
72047677 TTTTTTTTACA
1 TTTTTTATA-A
*
72047688 TTTTTTATGA
1 TTTTTTATAA
*
72047698 TTTTTTAAAA
1 TTTTTTATAA
72047708 TT
1 TT
72047710 CTAATATGTT
Statistics
Matches: 55, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
9 16 0.29
10 32 0.58
11 7 0.13
ACGTcount: A:0.27, C:0.01, G:0.06, T:0.65
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:72047683 original size:21 final size:20
Alignment explanation
Indices: 72047659--72047705 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
72047649 TTTATATGAG
* *
72047659 TTTTAATATTTTTTATAGTTT
1 TTTTAACATTTTTTAT-GATT
*
72047680 TTTTTACATTTTTTATGATT
1 TTTTAACATTTTTTATGATT
72047700 TTTTAA
1 TTTTAA
72047706 AATTCTAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.23, C:0.02, G:0.04, T:0.70
Consensus pattern (20 bp):
TTTTAACATTTTTTATGATT
Found at i:72047701 original size:19 final size:18
Alignment explanation
Indices: 72047629--72047705 Score: 55
Period size: 19 Copynumber: 4.0 Consensus size: 18
72047619 TCTATGAATT
*
72047629 TTTTTTATAATTTTTATAA
1 TTTTTTATGATTTTT-TAA
* * * *
72047648 GTTTATATGAGTTTTAATA
1 TTTTTTATGATTTTTTA-A
*
72047667 TTTTTTATAGTTTTTTTTACA
1 TTTTTTAT-G-ATTTTTTA-A
72047688 TTTTTTATGATTTTTTAA
1 TTTTTTATGATTTTTTAA
72047706 AATTCTAATA
Statistics
Matches: 43, Mismatches: 12, Indels: 7
0.69 0.19 0.11
Matches are distributed among these distances:
18 2 0.05
19 25 0.58
20 2 0.05
21 14 0.33
ACGTcount: A:0.26, C:0.01, G:0.06, T:0.66
Consensus pattern (18 bp):
TTTTTTATGATTTTTTAA
Found at i:72057732 original size:27 final size:27
Alignment explanation
Indices: 72057694--72057749 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
72057684 CGTGTGTCCA
72057694 GGCCGTATGAGGGGTTGT-AAGTCACAC
1 GGCCGTATGAGGGGTTGTGAA-TCACAC
*
72057721 GGCCGTGTGAGGGGTTGTGAATCACAC
1 GGCCGTATGAGGGGTTGTGAATCACAC
72057748 GG
1 GG
72057750 TCGCGTGCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.20, C:0.18, G:0.41, T:0.21
Consensus pattern (27 bp):
GGCCGTATGAGGGGTTGTGAATCACAC
Found at i:72059430 original size:31 final size:30
Alignment explanation
Indices: 72059392--72059458 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
72059382 TCTTAGGTAC
*
72059392 CAAATTAAGAAAAAGTGTCAAGTTCATGTAT
1 CAAATTAA-AAAAAGTGTCAAGTTCACGTAT
** *
72059423 CAAATTAAACCAAGTGTCAAGTTTACGTAT
1 CAAATTAAAAAAAGTGTCAAGTTCACGTAT
72059453 CAAATT
1 CAAATT
72059459 GGATAAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 24 0.75
31 8 0.25
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (30 bp):
CAAATTAAAAAAAGTGTCAAGTTCACGTAT
Found at i:72062101 original size:22 final size:21
Alignment explanation
Indices: 72062071--72062140 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
72062061 AATAAGCAAA
*
72062071 AAATAAAAAATTAAATTAAATT
1 AAATTAAAAATTAAA-TAAATT
* *
72062093 AAATTAAAAA-TGAAGAAATT
1 AAATTAAAAATTAAATAAATT
*
72062113 AAAAATTAAAAATTAAAATAAAAT
1 --AAATTAAAAATT-AAATAAATT
72062137 AAAT
1 AAAT
72062141 GTAACTATAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
20 5 0.13
21 3 0.08
22 23 0.61
23 1 0.03
24 6 0.16
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (21 bp):
AAATTAAAAATTAAATAAATT
Found at i:72062111 original size:15 final size:14
Alignment explanation
Indices: 72062093--72062130 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
72062083 AAATTAAATT
72062093 AAATTAAAAATGAA
1 AAATTAAAAATGAA
*
72062107 GAAATTAAAAATTAA
1 -AAATTAAAAATGAA
72062122 AAATTAAAA
1 AAATTAAAA
72062131 TAAAATAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (14 bp):
AAATTAAAAATGAA
Found at i:72063882 original size:44 final size:43
Alignment explanation
Indices: 72063833--72064234 Score: 306
Period size: 44 Copynumber: 9.1 Consensus size: 43
72063823 AGAGGTACAG
** * * *
72063833 GATTTGTCACTTTAATCTATTCCACTTCAACTTTAGGGAGATTA
1 GATTTGT-ACTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
* * *
72063877 GATTTGTAGCTTTAATATGCTCCACTGCAACTTCAGGGAGATGA
1 GATTTGTA-CTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * *
72063921 GACTTT-T-CTCTTCAATCTACTTCACTGCAACCTCAAGGA-ATAA
1 GA-TTTGTACT-TT-AATCTGCTCCACTACAACTTCAGGGAGATAA
* **
72063964 GATTTGTAACTTCAATCTGCTCCACTACAACTTCAGGGAGATGT
1 GATTTGT-ACTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
*
72064008 GACTTGTAGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
1 GATTTGTA-CTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * *
72064052 GACTTGTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGATTA
1 GATTTGT-ACTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * *
72064096 GACTCGTAGCTTTAATTTGCTCCACTAAAACTTTAGGGAGATAA
1 GATTTGTA-CTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * ** * * *
72064140 GATTCGCTATCTTCAATCTGCTCCATTGTAAATTTAGAGAGATAA
1 GATTTG-TA-CTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
* * * * * *
72064185 GATTTGTGGCCTTAATTTGCTCCACTGCAAATTCAGAGAGATAA
1 GATTTGT-ACTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
72064229 GATTTG
1 GATTTG
72064235 CCACAATAAC
Statistics
Matches: 294, Mismatches: 51, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
42 5 0.02
43 32 0.11
44 216 0.73
45 41 0.14
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (43 bp):
GATTTGTACTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
Found at i:72063995 original size:131 final size:132
Alignment explanation
Indices: 72063833--72064143 Score: 374
Period size: 131 Copynumber: 2.4 Consensus size: 132
72063823 AGAGGTACAG
* ** *
72063833 GATTTGTCACTTTAATCTATTCCACTTCAACTTTAGGGAGATTAGATTTGTAGCTTTAATATGCT
1 GATTTGTAACTTTAATCTGCTCCACTACAACTTTAGGGAGATTAGATTTGTAGCTTTAATATGCT
* * * ** *
72063898 CCACTGCAACTTCAGGGAGATGAGACTTTTCTCTTCAATCTACTTCACTGCAACCTCAAGGA-AT
66 CCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATCTACTCCACTGCAACCTCAAGGAGAT
72063962 AA
131 AA
* * * *
72063964 GATTTGTAACTTCAATCTGCTCCACTACAACTTCAGGGAGATGT-GACTTGTAGCTTTAATCTGC
1 GATTTGTAACTTTAATCTGCTCCACTACAACTTTAGGGAGAT-TAGATTTGTAGCTTTAATATGC
* * * *
72064028 TCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTTAGGGAGA
65 TCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATCTACTCCACTGCAACCTCAAGGAGA
*
72064093 TTA
130 TAA
* * * * * *
72064096 GACTCGTAGCTTTAATTTGCTCCACTAAAACTTTAGGGAGATAAGATT
1 GATTTGTAACTTTAATCTGCTCCACTACAACTTTAGGGAGATTAGATT
72064144 CGCTATCTTC
Statistics
Matches: 149, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
131 107 0.72
132 42 0.28
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (132 bp):
GATTTGTAACTTTAATCTGCTCCACTACAACTTTAGGGAGATTAGATTTGTAGCTTTAATATGCT
CCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATCTACTCCACTGCAACCTCAAGGAGAT
AA
Found at i:72064076 original size:88 final size:88
Alignment explanation
Indices: 72063842--72064234 Score: 376
Period size: 88 Copynumber: 4.5 Consensus size: 88
72063832 GGATTTGTCA
* * * * * * *
72063842 CTTTAATCTATTCCACTTCAACTTTAGGGAGATTAGATTTGTAGCTTTAATATGCTCCACTGCAA
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAA
* * **
72063907 CTTCAGGGAGATGAGACTTTTCT
66 CTTCAGGGAGATGTGACTTGTAG
* * * * * *
72063930 CTTCAATCTACTTCACTGCAACCTCAAGGA-ATAAGATTTGTAACTTCAATCTGCTCCACTACAA
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAA
72063994 CTTCAGGGAGATGTGACTTGTAG
66 CTTCAGGGAGATGTGACTTGTAG
* *
72064017 CTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTCAATCTGCTCCACTGCAA
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAA
* *
72064082 CTTTAGGGAGAT-TAGACTCGTAG
66 CTTCAGGGAGATGT-GACTTGTAG
* * * * * * * *
72064105 CTTTAATTTGCTCCACTAAAACTTTAGGGAGATAAGATTCGCTATCTTCAATCTGCTCCATTGTA
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTG-TAACTTCAATCTGCTCCACTGCA
* * * ** * *
72064170 AATTTAGAGAGATAAGATTTGTGG
65 ACTTCAGGGAGATGTGACTTGTAG
* * * * * *
72064194 CCTTAATTTGCTCCACTGCAAATTCAGAGAGATAAGATTTG
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTG
72064235 CCACAATAAC
Statistics
Matches: 254, Mismatches: 47, Indels: 7
0.82 0.15 0.02
Matches are distributed among these distances:
87 73 0.29
88 110 0.43
89 71 0.28
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (88 bp):
CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAACTTCAATCTGCTCCACTGCAA
CTTCAGGGAGATGTGACTTGTAG
Found at i:72066631 original size:46 final size:46
Alignment explanation
Indices: 72066578--72066753 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
72066568 TGGTTGAGCA
*
72066578 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *** * * ** *
72066624 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
*
72066671 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
72066717 CCCGAGCTCATTGAGTTGATTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72066754 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 23, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
46 70 0.67
47 34 0.33
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:72066734 original size:93 final size:93
Alignment explanation
Indices: 72066575--72066745 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
72066565 GGATGGTTGA
* * * *
72066575 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
72066640 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
72066668 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
*
72066733 TGATTCCGAGTTC
66 TGAGTCCGAGTTC
72066746 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:72071172 original size:48 final size:46
Alignment explanation
Indices: 72071051--72071214 Score: 131
Period size: 48 Copynumber: 3.6 Consensus size: 46
72071041 ACAAGATTCT
* * * **
72071051 GTATAAGACCATGTTTGGGACATGACATT-GACATCAATACGCGATCCC
1 GTATAAGACCATGTCTGGGACATGGC-TTCGACATC-ATAAG-GATTTC
* * * * *
72071099 GTGTAAGACTATATCAGGGATATGGCTTCGACATCGATAAGTGATTTC
1 GTATAAGACCATGTCTGGGACATGGCTTCGACATC-ATAAG-GATTTC
* *
72071147 GTATAAGACCATGTCTGGGACATGGCATCG--AT-ATGAGG-TTTC
1 GTATAAGACCATGTCTGGGACATGGCTTCGACATCATAAGGATTTC
*
72071189 GTATAAGACCATGTCTAGGACATGGC
1 GTATAAGACCATGTCTGGGACATGGC
72071215 GTCGGCACTG
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 29 0.31
43 1 0.01
44 4 0.04
46 2 0.02
47 2 0.02
48 57 0.60
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (46 bp):
GTATAAGACCATGTCTGGGACATGGCTTCGACATCATAAGGATTTC
Found at i:72073855 original size:38 final size:37
Alignment explanation
Indices: 72073753--72073877 Score: 160
Period size: 38 Copynumber: 3.3 Consensus size: 37
72073743 TGGCCCTGCC
* *
72073753 ATGGTCTTTACACTTTATCACAATGCCATAGCCCAACT
1 ATGGTC-TTACACTTTATCACAATGCCATAGCCTAGCT
72073791 ATGGTCTTTACACTTTATCACAATGCCATAGCCTAGCT
1 ATGGTC-TTACACTTTATCACAATGCCATAGCCTAGCT
* * ** *
72073829 ATGGTCTTAGACTTTAATTATGATGCCATAGCCTAGGT
1 ATGGTCTTACACTTT-ATCACAATGCCATAGCCTAGCT
72073867 ATGGTCTTACA
1 ATGGTCTTACA
72073878 TGTAAACAGA
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
37 8 0.10
38 70 0.90
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (37 bp):
ATGGTCTTACACTTTATCACAATGCCATAGCCTAGCT
Found at i:72076040 original size:30 final size:31
Alignment explanation
Indices: 72076006--72076068 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
72075996 ATTTATTTTA
72076006 TTGTTAA-TTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTTCTTATTATTTTAGAA-GCAT
*
72076036 TTGTTAATTTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTTCTTATTATTTTAGAAGCAT
72076067 TT
1 TT
72076069 TCTTGTTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 7 0.23
31 21 0.70
32 2 0.07
ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60
Consensus pattern (31 bp):
TTGTTAATTTTTCTTATTATTTTAGAAGCAT
Found at i:72076289 original size:24 final size:23
Alignment explanation
Indices: 72076255--72076304 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 23
72076245 ATTTTTATCC
72076255 AGGTCGAGCTTGGACAAAATTTT
1 AGGTCGAGCTTGGACAAAATTTT
*
72076278 AGGTCGGAGCTTGGACAGAATTTT
1 AGGTC-GAGCTTGGACAAAATTTT
72076302 AGG
1 AGG
72076305 CCCATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.28, C:0.12, G:0.32, T:0.28
Consensus pattern (23 bp):
AGGTCGAGCTTGGACAAAATTTT
Found at i:72077400 original size:38 final size:38
Alignment explanation
Indices: 72077358--72077433 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
72077348 AGTAATATTT
*
72077358 GACCTTGTCAAAAGTTTTCTGGCATTCTTCATCCCATA
1 GACCTTGTCAAAAGTTTTATGGCATTCTTCATCCCATA
*
72077396 GACCTTGTCAAAAGTTTTATGGCATTGTTCATCCCATA
1 GACCTTGTCAAAAGTTTTATGGCATTCTTCATCCCATA
72077434 CACTTGGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (38 bp):
GACCTTGTCAAAAGTTTTATGGCATTCTTCATCCCATA
Found at i:72093359 original size:10 final size:11
Alignment explanation
Indices: 72093316--72093359 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
72093306 ACCAAGAGTC
72093316 AAAAGGAGCCA
1 AAAAGGAGCCA
*
72093327 AAAACGAGCCA
1 AAAAGGAGCCA
*
72093338 AAAAGG-GACA
1 AAAAGGAGCCA
72093348 AAAAGGA-CCA
1 AAAAGGAGCCA
72093358 AA
1 AA
72093360 TCGAGAAGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
10 13 0.46
11 15 0.54
ACGTcount: A:0.59, C:0.18, G:0.23, T:0.00
Consensus pattern (11 bp):
AAAAGGAGCCA
Found at i:72108891 original size:13 final size:13
Alignment explanation
Indices: 72108869--72108901 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
72108859 AAGGGTTTGT
72108869 TTAT-TAAACTAA
1 TTATCTAAACTAA
72108881 TTATCTAAACTAA
1 TTATCTAAACTAA
*
72108894 TTAACTAA
1 TTATCTAA
72108902 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:72124162 original size:20 final size:20
Alignment explanation
Indices: 72124118--72124163 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
72124108 CAATTAGAGA
*
72124118 AAAATAAATGAACAATAAAAT
1 AAAATAAAT-AACAACAAAAT
72124139 -AAATAAAT-ACAACAACAAT
1 AAAATAAATAACAACAA-AAT
72124158 AAAATA
1 AAAATA
72124164 GGCATCAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 6 0.27
19 3 0.14
20 13 0.59
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.17
Consensus pattern (20 bp):
AAAATAAATAACAACAAAAT
Found at i:72127122 original size:24 final size:24
Alignment explanation
Indices: 72127090--72127150 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
72127080 AAAATCCAAT
* * *
72127090 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAAT-TA
72127114 GCACTATGTGTGCGAGTGTAATTA
1 GCACTATGTGTGCGAGTGTAATTA
72127138 GCACTATGTGTGC
1 GCACTATGTGTGC
72127151 AAATACGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATTA
Found at i:72130127 original size:42 final size:42
Alignment explanation
Indices: 72130079--72130232 Score: 193
Period size: 42 Copynumber: 3.7 Consensus size: 42
72130069 ATAGTTTTGA
* *
72130079 CTATGCATTGGCACTTAGTGTACGAGATCGGGATAGCTTCGG
1 CTATGCATTGGCACTTAGTGTGCGAGATCGAGATAGCTTCGG
*
72130121 CTATGCATTGGCACTTAGTGTGCGAGATCAAGATAGCTTCGG
1 CTATGCATTGGCACTTAGTGTGCGAGATCGAGATAGCTTCGG
* * * * *
72130163 CTATGCATTGGAACTTAGTGTGC-ATGATTGTGTTAGCTTTGG
1 CTATGCATTGGCACTTAGTGTGCGA-GATCGAGATAGCTTCGG
* * *
72130205 CTACGTATTGGCACTTAGTGTGTGAGAT
1 CTATGCATTGGCACTTAGTGTGCGAGAT
72130233 TCCCGAGTAA
Statistics
Matches: 97, Mismatches: 13, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.01
42 95 0.98
43 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.33
Consensus pattern (42 bp):
CTATGCATTGGCACTTAGTGTGCGAGATCGAGATAGCTTCGG
Found at i:72130335 original size:32 final size:32
Alignment explanation
Indices: 72130298--72130396 Score: 162
Period size: 32 Copynumber: 3.1 Consensus size: 32
72130288 TGAGTATGAG
*
72130298 ATTGGTACAAGATGGTACAGGTATGTACGGAA
1 ATTGGTACAAGATGGTATAGGTATGTACGGAA
* * *
72130330 ATTGGTACGAGATGATATAGGTATGTATGGAA
1 ATTGGTACAAGATGGTATAGGTATGTACGGAA
72130362 ATTGGTACAAGATGGTATAGGTATGTACGGAA
1 ATTGGTACAAGATGGTATAGGTATGTACGGAA
72130394 ATT
1 ATT
72130397 CAATTGAGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 60 1.00
ACGTcount: A:0.34, C:0.06, G:0.30, T:0.29
Consensus pattern (32 bp):
ATTGGTACAAGATGGTATAGGTATGTACGGAA
Found at i:72150709 original size:19 final size:18
Alignment explanation
Indices: 72150682--72150722 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
72150672 AAAAGTCATG
*
72150682 AAATTTAAAAATAATAATA
1 AAATATAAAAATAA-AATA
72150701 AAATATAAAAATAAAATA
1 AAATATAAAAATAAAATA
72150719 AAAT
1 AAAT
72150723 TCATTATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (18 bp):
AAATATAAAAATAAAATA
Found at i:72150844 original size:19 final size:19
Alignment explanation
Indices: 72150799--72150845 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
72150789 ATCAAATTAA
*
72150799 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
72150818 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
72150837 AATAAAAAT
1 AATAAAAAT
72150846 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:72153409 original size:81 final size:81
Alignment explanation
Indices: 72153274--72153424 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
72153264 ATTCTGAAGT
* * * * * * *
72153274 CAACAGCCAAGATACACAAGCATGTGATAAACATCTGCAAAATTTTCCCACTGAAAATTTATTAC
1 CAACAGCCAAGATACACAAGCAAGTGAAAAAAATATGCAAAATATTCCCACTGAAAATCTATCAC
72153339 AAATTAAACAATGTAC
66 AAATTAAACAATGTAC
*
72153355 CAACAGCCAAGATACACAAGTAAGTGACAAAAAATAT-CAATAA-ATTCCCACTGAAAATCTATC
1 CAACAGCCAAGATACACAAGCAAGTGA-AAAAAATATGCAA-AATATTCCCACTGAAAATCTATC
72153418 ACAAATT
64 ACAAATT
72153425 CAAAAAGGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
81 52 0.87
82 8 0.13
ACGTcount: A:0.47, C:0.21, G:0.09, T:0.23
Consensus pattern (81 bp):
CAACAGCCAAGATACACAAGCAAGTGAAAAAAATATGCAAAATATTCCCACTGAAAATCTATCAC
AAATTAAACAATGTAC
Found at i:72155507 original size:14 final size:14
Alignment explanation
Indices: 72155488--72155537 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
72155478 AGTTAAGTAA
72155488 TTTTATAAAATATT
1 TTTTATAAAATATT
* *
72155502 TTTTAT-TACTATT
1 TTTTATAAAATATT
* *
72155515 TTTTATAAATTAGT
1 TTTTATAAAATATT
72155529 TTTTATAAA
1 TTTTATAAA
72155538 TTAAAAAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
13 11 0.37
14 19 0.63
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (14 bp):
TTTTATAAAATATT
Found at i:72155538 original size:14 final size:14
Alignment explanation
Indices: 72155514--72155540 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
72155504 TTATTACTAT
72155514 TTTTTATAAATTAG
1 TTTTTATAAATTAG
72155528 TTTTTATAAATTA
1 TTTTTATAAATTA
72155541 AAAAATTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
TTTTTATAAATTAG
Found at i:72155985 original size:20 final size:22
Alignment explanation
Indices: 72155960--72156004 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
72155950 AAATGTTTTT
*
72155960 TTTATTTATTT-TTAATG-TTA
1 TTTATTTATTTATCAATGATTA
72155980 TTTATTTATTTATCAATGATTA
1 TTTATTTATTTATCAATGATTA
72156002 TTT
1 TTT
72156005 TACTTTACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.50
21 5 0.23
22 6 0.27
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (22 bp):
TTTATTTATTTATCAATGATTA
Found at i:72156011 original size:24 final size:21
Alignment explanation
Indices: 72155959--72156011 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 21
72155949 CAAATGTTTT
*
72155959 TTTTATTTATTTTTAATGTTA
1 TTTTATTTATTTTCAATGTTA
72155980 -TTTATTTATTTATCAATGATTA
1 TTTTATTTATTT-TCAATG-TTA
72156002 TTTTACTTTA
1 TTTTA-TTTA
72156012 CAAATTCAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 11 0.41
21 5 0.19
22 3 0.11
23 4 0.15
24 4 0.15
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (21 bp):
TTTTATTTATTTTCAATGTTA
Found at i:72156378 original size:23 final size:24
Alignment explanation
Indices: 72156351--72156398 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
72156341 CCAAAATAAC
72156351 AATTAA-TTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
72156374 AATTAATTTTTATATAAACTTTTA
1 AATTAATTTTTATATAAACTTTTA
72156398 A
1 A
72156399 TAAATATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 6 0.25
24 18 0.75
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
AATTAATTTTTATATAAACTTTTA
Found at i:72156401 original size:11 final size:12
Alignment explanation
Indices: 72156357--72156402 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
72156347 TAACAATTAA
72156357 TTTTATATAAAC
1 TTTTATATAAAC
* * *
72156369 TTTTAAATTAAT
1 TTTTATATAAAC
72156381 TTTTATATAAAC
1 TTTTATATAAAC
72156393 TTTTA-ATAAA
1 TTTTATATAAA
72156403 TATATGAGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
11 5 0.18
12 23 0.82
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTATATAAAC
Found at i:72157077 original size:41 final size:39
Alignment explanation
Indices: 72157016--72157213 Score: 184
Period size: 40 Copynumber: 5.0 Consensus size: 39
72157006 TTACATGACT
* * *
72157016 TTTAGTGGCGTTTTATCAAAAGCGACGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCT-ATGCTCT-GTC
* * *
72157057 TTTAGCAGCGTTTCACCAAAAGCGCCGCT-GGCTCTAGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTATGCTCT-GTC
* *
72157096 TTTAGCGGCGTTTTACCAAAAGCGCCGTTGATGCTCTGTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCT-ATGCTCTGTC
* ** *
72157136 TTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCTGTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTA-TGCTCTGTC
** **
72157176 TTTAGCGTTGTTTTTTCAAAA-CGCCGCTATTGCTCTGT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTA-TGCTCTGT
72157214 GTTTTACAAT
Statistics
Matches: 133, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 51 0.38
40 53 0.40
41 29 0.22
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (39 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTATGCTCTGTC
Found at i:72157107 original size:39 final size:38
Alignment explanation
Indices: 72157016--72157156 Score: 147
Period size: 39 Copynumber: 3.6 Consensus size: 38
72157006 TTACATGACT
* * * *
72157016 TTTAGTGGCGTTTTATCAAAAGCGACGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCT--GGCTCT-GTC
* *
72157057 TTTAGCAGCGTTTCACCAAAAGCGCCGCTGGCTCTAGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTGGCTCT-GTC
* *
72157096 TTTAGCGGCGTTTTACCAAAAGCGCCGTTGATGCTCTGTT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTG--GCTCTGTC
*
72157136 TTTAGCGGCGTTTTAACAAAA
1 TTTAGCGGCGTTTTACCAAAA
72157157 AAGCCGCTAT
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 35 0.41
40 22 0.26
41 29 0.34
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (38 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTGGCTCTGTC
Found at i:72157213 original size:39 final size:40
Alignment explanation
Indices: 72157015--72157219 Score: 139
Period size: 39 Copynumber: 5.1 Consensus size: 40
72157005 GTTACATGAC
* * ** * *
72157015 TTTTAGTGGCGTTTTATCAAAAGCGACGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCT-GT
* * * * ** *
72157056 CTTTAGCAGCGTTTCACCAAAAGCGCCGC--TGGCTCTAGT
1 TTTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCT-GT
* * ** *
72157095 CTTTAGCGGCGTTTTACCAAAAGCGCCGTTGA-TGCTCTGT
1 TTTTAGCGGCGTTTTAACAAAAAAGCCGCT-ATTGCTCTGT
72157135 TTTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCTGT
** ** *
72157175 TTTTAGCGTTGTTTTTTC-AAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCTGT
72157214 GTTTTA
1 -TTTTA
72157220 CAATTTTTGC
Statistics
Matches: 136, Mismatches: 23, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
39 54 0.40
40 54 0.40
41 28 0.21
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTAACAAAAAAGCCGCTATTGCTCTGT
Found at i:72160708 original size:23 final size:24
Alignment explanation
Indices: 72160669--72160734 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
72160659 TAAACATAAA
*
72160669 AGGAAGTTCAAGTGAGC-CATATC
1 AGGAAGTTCAAGAGAGCTCATATC
*
72160692 AGGAAGTTCATA-AGAGCTTATATC
1 AGGAAGTTCA-AGAGAGCTCATATC
* *
72160716 AGGACGTTCACAAAGAGCT
1 AGGAAGTTCA-AGAGAGCT
72160735 ACATTTGTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 14 0.39
24 16 0.44
25 6 0.17
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (24 bp):
AGGAAGTTCAAGAGAGCTCATATC
Found at i:72160719 original size:24 final size:25
Alignment explanation
Indices: 72160687--72160734 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
72160677 CAAGTGAGCC
*
72160687 ATATCAGGAAGTTCA-TAAGAGCTT
1 ATATCAGGAAGTTCACAAAGAGCTT
*
72160711 ATATCAGGACGTTCACAAAGAGCT
1 ATATCAGGAAGTTCACAAAGAGCT
72160735 ACATTTGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.38, C:0.17, G:0.21, T:0.25
Consensus pattern (25 bp):
ATATCAGGAAGTTCACAAAGAGCTT
Found at i:72161804 original size:17 final size:18
Alignment explanation
Indices: 72161782--72161815 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72161772 TTTATATTAA
*
72161782 GGTTAA-AATGTTAATTT
1 GGTTAATAAGGTTAATTT
72161799 GGTTAATAAGGTTAATT
1 GGTTAATAAGGTTAATT
72161816 AAATAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (18 bp):
GGTTAATAAGGTTAATTT
Found at i:72162721 original size:43 final size:44
Alignment explanation
Indices: 72162672--72162843 Score: 174
Period size: 43 Copynumber: 4.0 Consensus size: 44
72162662 GATTACTGAG
*
72162672 ATGTGATTACATGTAAGACCATGTCTGGGACATTGACATTGTAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGACATTGTAT
* *
72162716 -TGTGATTACGTGCAAGACCATGTCTGGGACATTGGA-ATCGT-T
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATT-GACATTGTAT
* * * * **
72162758 ATATAATTTCGTGTAAGACCATGTCTGGGACATTGGCA-TCAAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGACATTGTAT
* * * * *
72162801 ATGTGATAACTTGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGACATTGTAT
72162844 GAGCTATATG
Statistics
Matches: 103, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
42 7 0.07
43 94 0.91
44 2 0.02
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (44 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACATTGACATTGTAT
Found at i:72166699 original size:21 final size:21
Alignment explanation
Indices: 72166675--72166733 Score: 64
Period size: 25 Copynumber: 2.6 Consensus size: 21
72166665 GTTTGATATG
72166675 TCAGCAAGTAAAAGCTGAACA
1 TCAGCAAGTAAAAGCTGAACA
**
72166696 TCAGGTGCCTTGTAAAAGCTGAACA
1 TCA---G-CAAGTAAAAGCTGAACA
72166721 TCAGCAAGTAAAA
1 TCAGCAAGTAAAA
72166734 CTAAATTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
21 10 0.33
22 1 0.03
24 1 0.03
25 18 0.60
ACGTcount: A:0.42, C:0.19, G:0.20, T:0.19
Consensus pattern (21 bp):
TCAGCAAGTAAAAGCTGAACA
Found at i:72167445 original size:63 final size:63
Alignment explanation
Indices: 72167367--72167495 Score: 258
Period size: 63 Copynumber: 2.0 Consensus size: 63
72167357 ATGGTTGGAG
72167367 AAACAACTTTTGCTAAGTGATTTTCAGTGAAAATGCCTAAAAGGACTAAATTGTAAATGTTAT
1 AAACAACTTTTGCTAAGTGATTTTCAGTGAAAATGCCTAAAAGGACTAAATTGTAAATGTTAT
72167430 AAACAACTTTTGCTAAGTGATTTTCAGTGAAAATGCCTAAAAGGACTAAATTGTAAATGTTAT
1 AAACAACTTTTGCTAAGTGATTTTCAGTGAAAATGCCTAAAAGGACTAAATTGTAAATGTTAT
72167493 AAA
1 AAA
72167496 ATATGTAGTA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.33
Consensus pattern (63 bp):
AAACAACTTTTGCTAAGTGATTTTCAGTGAAAATGCCTAAAAGGACTAAATTGTAAATGTTAT
Found at i:72173079 original size:37 final size:36
Alignment explanation
Indices: 72173028--72173129 Score: 127
Period size: 37 Copynumber: 2.8 Consensus size: 36
72173018 TGTGAGTATG
72173028 TGTAAGACCATAGCTGGGCTATGGCATCGTAATGACA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTAAT-ACA
* * * *
72173065 TGTATGACCATAGCTGGGCTATGGCATTGTGATACG
1 TGTAAGACCATAGCTGGGCTATGGCATCGTAATACA
72173101 TGTAAGACCAT-GTCTGGGAC-ATGGCATCG
1 TGTAAGACCATAG-CTGGG-CTATGGCATCG
72173130 ATATGAGATT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
35 1 0.02
36 25 0.44
37 31 0.54
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (36 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGTAATACA
Found at i:72173146 original size:42 final size:42
Alignment explanation
Indices: 72173099--72173214 Score: 173
Period size: 42 Copynumber: 2.8 Consensus size: 42
72173089 CATTGTGATA
* *
72173099 CGTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATTT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATGAGACTT
*
72173141 CGTGTAAGACCATGTCTGGGACATGACATCAATATGAGACTT
1 CGTGTAAGACCATGTCTGGGACATGGCATCAATATGAGACTT
72173183 CGTGTAAGACCATAGT-T-GGACTATGGCATCAA
1 CGTGTAAGACCAT-GTCTGGGAC-ATGGCATCAA
72173215 ATAAATGACG
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
41 4 0.06
42 62 0.91
43 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATGGCATCAATATGAGACTT
Found at i:72178159 original size:47 final size:47
Alignment explanation
Indices: 72178108--72178346 Score: 415
Period size: 47 Copynumber: 5.1 Consensus size: 47
72178098 TTTAGGATTA
*
72178108 AATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
72178155 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
72178202 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
72178249 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * * *
72178296 AGTGTGATGAATGTGAACATGCATATATGTGGTAAAGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
72178343 AATG
1 AATG
72178347 CGAAATGTGT
Statistics
Matches: 184, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 184 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:72178209 original size:22 final size:22
Alignment explanation
Indices: 72178138--72178256 Score: 59
Period size: 22 Copynumber: 5.1 Consensus size: 22
72178128 GCATATATGA
72178138 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
72178160 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
72178185 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* *
72178207 GATGAATG-TGAACAT-G-CATATGTGT
1 GAT-AAGGCCG-A-ATGGCCA-A--TGT
72178232 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
72178254 GAT
1 GAT
72178257 GAATGTGAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 20 0.28
23 17 0.24
24 17 0.24
25 17 0.24
ACGTcount: A:0.33, C:0.13, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:72178376 original size:46 final size:46
Alignment explanation
Indices: 72178320--72178502 Score: 276
Period size: 46 Copynumber: 4.0 Consensus size: 46
72178310 GAACATGCAT
* ** *
72178320 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAAATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
*
72178366 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
72178412 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
* * * * *
72178458 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATG
72178503 TGTATATATA
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.36, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAACATGTATGAGATGG
Found at i:72178416 original size:141 final size:138
Alignment explanation
Indices: 72178120--72178438 Score: 344
Period size: 141 Copynumber: 2.3 Consensus size: 138
72178110 TGTGATGAAT
72178120 GTGAACATGCATAT-ATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATG
1 GTGAACATGCATATGA-G-GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATG
* * * * *
72178184 TGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
64 TGATAAAGCCGAATGGCCAATGCGA-GAATGTGAAAATGCATATGAGTGATAAAGCCGAATGGCC
* *
72178249 AATGTGATGAAT
128 AATGCGA-GAAC
* *
72178261 GTGAACATGCATATGTGTGATAAGGCCGAATGGCCAGTGTGATGAATGTGAACATGCATATATGT
1 GTGAACATGCATATGAG-GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGT
* * *
72178326 GGTAAAGCCGAATGGCTAATGCGA-AATGTGTATGAAATGGATATGAG-G-TAAAGCCGAATGGC
65 GATAAAGCCGAATGGCCAATGCGAGAATGTG-A--AAATGCATATGAGTGATAAAGCCGAATGGC
*
72178388 TAATGCGA-AAC
127 CAATGCGAGAAC
* * * *
72178399 GTGTATGAGATGGATATGAGG-TAAAGCCGAATGGCTAATG
1 GTG-A--ACATGCATATGAGGATAAGGCCGAATGGCCAATG
72178439 CGAAACATGT
Statistics
Matches: 151, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
138 5 0.03
139 23 0.15
140 21 0.14
141 92 0.61
142 10 0.07
ACGTcount: A:0.34, C:0.12, G:0.30, T:0.24
Consensus pattern (138 bp):
GTGAACATGCATATGAGGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTG
ATAAAGCCGAATGGCCAATGCGAGAATGTGAAAATGCATATGAGTGATAAAGCCGAATGGCCAAT
GCGAGAAC
Found at i:72187416 original size:22 final size:21
Alignment explanation
Indices: 72187391--72187432 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
72187381 ATTATTAACG
72187391 TAATGAATTTTAATTAATTTTA
1 TAATGAATTTTAATT-ATTTTA
* *
72187413 TAATTAATTTTGATTATTTT
1 TAATGAATTTTAATTATTTT
72187433 CGACAGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (21 bp):
TAATGAATTTTAATTATTTTA
Found at i:72198019 original size:50 final size:51
Alignment explanation
Indices: 72197947--72198078 Score: 169
Period size: 50 Copynumber: 2.6 Consensus size: 51
72197937 GAAAATGGTT
* * * *
72197947 TTAGGTTACGTGTGTAGTACTAAGTGCAGGCTATTAC-GTGTACCAGAT-GG
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACT-CTGTGTACCAGATAGC
*
72197997 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTCTGTGTACCCGATAGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTCTGTGTACCAGATAGC
* * *
72198048 TTCGATCACATGTGTGGTACTAAGTGCAGGC
1 TTAGGTCACATGTGTAGTACTAAGTGCAGGC
72198079 CACTATGCGT
Statistics
Matches: 72, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
49 1 0.01
50 42 0.58
51 29 0.40
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (51 bp):
TTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTCTGTGTACCAGATAGC
Found at i:72198097 original size:51 final size:51
Alignment explanation
Indices: 72197957--72198182 Score: 156
Period size: 50 Copynumber: 4.5 Consensus size: 51
72197947 TTAGGTTACG
* * * * ** * * *
72197957 TGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGAT-GGTTAGGTCACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATCACA
* * * *** *
72198007 TGTGTAGTACTAAGTGCAGGCTACTCTGTGTACCCGATAGCTTCGATCACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATCACA
* * *
72198058 TGTGTGGTACTAAGTGCAGGCCACTATGCGTAAAAGATAGCTTTGGTTACA
1 TGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATCACA
* * * *
72198109 -ATGTGGTACTATA-TGAAGGCCACTTTGTG-AAGAAGGTAGCTTTGA-CTACA
1 TGTGTGGTACTA-AGTGCAGGCCACTATGTGTAA-AAGATAGCTTTGATC-ACA
* * *
72198159 AGGGTGGTACTATGTGCAGGCCAC
1 TGTGTGGTACTAAGTGCAGGCCAC
72198183 CGGGCATCCG
Statistics
Matches: 142, Mismatches: 28, Indels: 11
0.78 0.15 0.06
Matches are distributed among these distances:
49 2 0.01
50 71 0.50
51 69 0.49
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (51 bp):
TGTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATCACA
Found at i:72199615 original size:40 final size:40
Alignment explanation
Indices: 72199555--72199722 Score: 243
Period size: 40 Copynumber: 4.2 Consensus size: 40
72199545 CCTTCGAAAT
* * *
72199555 TTAG-CCGGACATAGCTACTCGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGAC
72199594 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGAC
* *
72199634 TTAGCCCGGATATAGTAACTCGCAGAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGAC
*
72199674 TTAGCCCGGA-ATTAGTC-ACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAG-CAACTCGCACAAATGCCTTCGGGAC
72199714 TTAGCCCGG
1 TTAGCCCGG
72199723 TTACCATCCG
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 5 0.04
40 113 0.96
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGAC
Found at i:72202049 original size:11 final size:11
Alignment explanation
Indices: 72202033--72202066 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
72202023 TTTATATATG
72202033 GTAGAATTTTT
1 GTAGAATTTTT
72202044 GTAGAATTTTT
1 GTAGAATTTTT
72202055 GTAGAATTTTT
1 GTAGAATTTTT
72202066 G
1 G
72202067 GCCGGGCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (11 bp):
GTAGAATTTTT
Found at i:72203345 original size:28 final size:29
Alignment explanation
Indices: 72203313--72203411 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
72203303 ATAATAAGCC
*
72203313 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
72203341 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
72203369 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
72203398 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72203412 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:72210994 original size:40 final size:40
Alignment explanation
Indices: 72210939--72211130 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
72210929 GAAAATAGCT
* *
72210939 ACTCGCTCGAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
72210979 ACTCGCACAAATGCCTTCGAGACTTAGCTCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
72211019 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
* *
72211059 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GAAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
* *
72211099 ACTAGCACAAATGCCTTCAGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
72211131 TTACCATTCG
Statistics
Matches: 140, Mismatches: 10, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 3 0.02
40 136 0.97
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:72229638 original size:26 final size:26
Alignment explanation
Indices: 72229609--72229670 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
72229599 ACTAGGGCAA
72229609 AAGCCCTTTTCGGTAAACTGGGGAAT
1 AAGCCCTTTTCGGTAAACTGGGGAAT
*
72229635 AAGCCCTTTTCGGTAAACTGGGGCAT
1 AAGCCCTTTTCGGTAAACTGGGGAAT
*
72229661 AAGCTCTTTT
1 AAGCCCTTTT
72229671 GCACTTCCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (26 bp):
AAGCCCTTTTCGGTAAACTGGGGAAT
Found at i:72229745 original size:20 final size:20
Alignment explanation
Indices: 72229720--72229784 Score: 112
Period size: 20 Copynumber: 3.2 Consensus size: 20
72229710 TTATGAACAC
*
72229720 ATCATGTGCATATCGTATAT
1 ATCATGTGCATATCGTACAT
72229740 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCGTACAT
*
72229760 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCGTACAT
72229780 ATCAT
1 ATCAT
72229785 ATCAATCATG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCGTACAT
Found at i:72229771 original size:11 final size:11
Alignment explanation
Indices: 72229720--72229775 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
72229710 TTATGAACAC
72229720 ATCATGTGCAT
1 ATCATGTGCAT
**
72229731 ATC--GTATAT
1 ATCATGTGCAT
72229740 ATCATGTGCAT
1 ATCATGTGCAT
*
72229751 ATC--GTACAT
1 ATCATGTGCAT
72229760 ATCATGTGCAT
1 ATCATGTGCAT
72229771 ATCAT
1 ATCAT
72229776 ACATATCATA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:72229792 original size:4 final size:5
Alignment explanation
Indices: 72229728--72229793 Score: 50
Period size: 5 Copynumber: 13.6 Consensus size: 5
72229718 ACATCATGTG
* * * *
72229728 CATAT CGTAT -ATAT CATGT GCATAT CGTA- CATAT CATGT GCATAT CATA-
1 CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT -CATAT CATAT
72229777 CATAT CATAT CA-AT CAT
1 CATAT CATAT CATAT CAT
72229794 GTATATCAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
4 14 0.30
5 25 0.53
6 8 0.17
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (5 bp):
CATAT
Found at i:72229801 original size:9 final size:10
Alignment explanation
Indices: 72229728--72229793 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 10
72229718 ACATCATGTG
*
72229728 CATATCGTAT
1 CATATCATAT
*
72229738 -ATATCATGT
1 CATATCATAT
*
72229747 GCATATCGTA-
1 -CATATCATAT
*
72229757 CATATCATGT
1 CATATCATAT
72229767 GCATATCATA-
1 -CATATCATAT
72229777 CATATCATAT
1 CATATCATAT
72229787 CA-ATCAT
1 CATATCAT
72229794 GTATATCAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 11
0.71 0.11 0.18
Matches are distributed among these distances:
9 28 0.64
10 2 0.05
11 14 0.32
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (10 bp):
CATATCATAT
Found at i:72232692 original size:37 final size:37
Alignment explanation
Indices: 72232633--72232771 Score: 224
Period size: 37 Copynumber: 3.8 Consensus size: 37
72232623 AGCTCAGACG
* *
72232633 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
72232670 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
72232707 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
72232744 TAATCTCCACACATAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
72232772 TAGAGCTCGG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:72233254 original size:49 final size:47
Alignment explanation
Indices: 72232890--72233525 Score: 975
Period size: 47 Copynumber: 13.3 Consensus size: 47
72232880 CCCTTCGGGA
* * * * * *
72232890 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
72232937 CCTGTCACATATATACACTTTCACATTTATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72232984 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72233031 CTTATCACATATATACATTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72233078 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72233125 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72233172 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72233223 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72233272 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72233321 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72233368 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72233417 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72233464 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72233513 CTTATCACATATA
1 CTTATCACATATA
72233526 CTATCATGTA
Statistics
Matches: 550, Mismatches: 31, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
47 319 0.58
49 184 0.33
51 47 0.09
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72233358 original size:96 final size:96
Alignment explanation
Indices: 72232890--72233525 Score: 1032
Period size: 96 Copynumber: 6.6 Consensus size: 96
72232880 CCCTTCGGGA
* * * * *
72232890 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
72232953 ACTTTCACATTTATCACATCGGCCATTAGAC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
72232984 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
72233047 ATTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72233078 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72233141 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
72233172 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATAT
72233237 ATACACTTTCACATTCATCACATCGGCCATTAGGC
62 ATACACTTTCACATTCATCACATCGGCCATTAGGC
72233272 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
72233337 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
72233368 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
72233433 ACTTTCACATTCATCACATCGACCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
72233464 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGACCTTATCACATATA
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
72233526 CTATCATGTA
Statistics
Matches: 515, Mismatches: 19, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
93 1 0.00
94 179 0.35
96 195 0.38
98 93 0.18
100 47 0.09
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72241915 original size:20 final size:20
Alignment explanation
Indices: 72241890--72241936 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
72241880 TTATGAATAC
72241890 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
72241909 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
72241930 ATCATGT
1 ATCATGT
72241937 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:72244007 original size:23 final size:23
Alignment explanation
Indices: 72243981--72244030 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
72243971 ATTTTCAATA
*
72243981 CACCGGCACATAGCCCAAATAAT
1 CACCGACACATAGCCCAAATAAT
*
72244004 CACCGACACATAGCCCGAATAAT
1 CACCGACACATAGCCCAAATAAT
72244027 CACC
1 CACC
72244031 AAATTTCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.38, G:0.12, T:0.12
Consensus pattern (23 bp):
CACCGACACATAGCCCAAATAAT
Found at i:72244391 original size:17 final size:18
Alignment explanation
Indices: 72244361--72244402 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
72244351 TCGAAATTCA
*
72244361 TCAAATTAACTAATTT-TC
1 TCAAA-TAAATAATTTATC
72244379 TCAAATAAATAATTTATC
1 TCAAATAAATAATTTATC
72244397 -CAAATA
1 TCAAATA
72244403 TTCTAAATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (18 bp):
TCAAATAAATAATTTATC
Found at i:72245240 original size:18 final size:18
Alignment explanation
Indices: 72245217--72245258 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
72245207 AACAAGACAA
72245217 GGTCAAGTTAAAGAGTCC
1 GGTCAAGTTAAAGAGTCC
72245235 GGTCAAGTTAAAGAGTCC
1 GGTCAAGTTAAAGAGTCC
72245253 GGTCAA
1 GGTCAA
72245259 TTTTCTACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (18 bp):
GGTCAAGTTAAAGAGTCC
Found at i:72256094 original size:49 final size:48
Alignment explanation
Indices: 72255963--72256109 Score: 204
Period size: 48 Copynumber: 3.0 Consensus size: 48
72255953 TGTTTTATCA
* * *
72255963 ACTGGCACACATATCAACGTCGATGCCATGTCCCAAACATGGTCTTAC
1 ACTGGCTCACATATCAACGCCGATGCCATGTCCTAAACATGGTCTTAC
*
72256011 ACTGGCTCACATATCAACGCCGATGCCATGTCCTAGACATGGTCTTAC
1 ACTGGCTCACATATCAACGCCGATGCCATGTCCTAAACATGGTCTTAC
* * * * *
72256059 ACTGGTTCTCATCTCACATGCCGATGCCATGTCCTATACATGGTCTTAC
1 ACTGGCTCACATATCA-ACGCCGATGCCATGTCCTAAACATGGTCTTAC
72256108 AC
1 AC
72256110 GACATCTCGT
Statistics
Matches: 89, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
48 57 0.64
49 32 0.36
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (48 bp):
ACTGGCTCACATATCAACGCCGATGCCATGTCCTAAACATGGTCTTAC
Found at i:72265902 original size:25 final size:25
Alignment explanation
Indices: 72265874--72265921 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72265864 TTATATTATG
* * *
72265874 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
72265899 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
72265922 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:72266105 original size:25 final size:26
Alignment explanation
Indices: 72266033--72266130 Score: 128
Period size: 25 Copynumber: 3.8 Consensus size: 26
72266023 AAGGAAGTGC
*
72266033 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
72266059 AAAAAGGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
* * **
72266086 AAAAGGGATT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
72266111 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
72266131 ATTAAAGAGG
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
25 30 0.47
26 9 0.14
27 25 0.39
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:72266114 original size:52 final size:51
Alignment explanation
Indices: 72266033--72266130 Score: 144
Period size: 52 Copynumber: 1.9 Consensus size: 51
72266023 AAGGAAGTGC
* **
72266033 AAAAGGGCTTATGCCCTAGTTTATTGAAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGATTATGCCCTAGTTTACCG-AAAAGGGCTT-TGCCCCAGTTTATTG
72266086 AAAAGGGATT-TGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTT
1 AAAAGGGATTATGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTT
72266131 ATTAAAGAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
50 10 0.24
51 10 0.24
52 13 0.31
53 9 0.21
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (51 bp):
AAAAGGGATTATGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATTG
Found at i:72284320 original size:40 final size:40
Alignment explanation
Indices: 72284236--72284459 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
72284226 TTGAATGATG
* * * *
72284236 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
72284276 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
72284316 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72284354 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72284394 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72284435 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72284460 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72284454 original size:80 final size:80
Alignment explanation
Indices: 72284236--72284459 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
72284226 TTGAATGATG
* * * * *
72284236 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
72284299 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
72284316 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
72284378 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
72284394 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
72284459 G
66 G
72284460 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:72287778 original size:28 final size:27
Alignment explanation
Indices: 72287693--72287812 Score: 152
Period size: 27 Copynumber: 4.4 Consensus size: 27
72287683 ATTAAGTCCG
*
72287693 CACTCAGTGCTAT-TAATCAACTCGCA
1 CACTTAGTGCTATATAATCAACTCGCA
*
72287719 CACTTAGTGCTATATAATCAACTCGTA
1 CACTTAGTGCTATATAATCAACTCGCA
72287746 CACTTAGTGCTATATAATCAAACTCGCA
1 CACTTAGTGCTATATAATC-AACTCGCA
* * * *
72287774 CACTTAGTGCTGTACAATTTAAACCCGCA
1 CACTTAGTGCTATATAA--TCAACTCGCA
72287803 CACTTAGTGC
1 CACTTAGTGC
72287813 CAATTCATGA
Statistics
Matches: 83, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
26 12 0.14
27 31 0.37
28 22 0.27
29 17 0.20
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.29
Consensus pattern (27 bp):
CACTTAGTGCTATATAATCAACTCGCA
Found at i:72292187 original size:40 final size:40
Alignment explanation
Indices: 72292103--72292324 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
72292093 TTGAATGATG
* * * *
72292103 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
72292143 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72292183 TCC-GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72292221 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72292261 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72292302 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
72292325 GAACGAGGAG
Statistics
Matches: 161, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 27 0.17
39 12 0.07
40 112 0.70
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72292238 original size:78 final size:80
Alignment explanation
Indices: 72292103--72292324 Score: 274
Period size: 78 Copynumber: 2.8 Consensus size: 80
72292093 TTGAATGATG
* * * * * *
72292103 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
72292166 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
72292183 TCC-GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
72292245 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * *
72292261 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATT
72292325 GAACGAGGAG
Statistics
Matches: 123, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.02
78 51 0.41
79 19 0.15
80 49 0.40
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:72292347 original size:118 final size:118
Alignment explanation
Indices: 72292103--72292348 Score: 270
Period size: 118 Copynumber: 2.1 Consensus size: 118
72292093 TTGAATGATG
* *
72292103 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
72292168 GTGCGAGATACTAATTCCGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
72292221 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
72292284 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT-GAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACC-GGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
72292340 TCC-GGTTAA
1 TCCGGGTTAA
72292349 ATTCCAAGGT
Statistics
Matches: 108, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
117 3 0.03
118 68 0.63
119 25 0.23
120 12 0.11
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:72293821 original size:7 final size:7
Alignment explanation
Indices: 72293805--72293837 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
72293795 TTCAAACTAC
72293805 TTTTTA-
1 TTTTTAT
72293811 TTTTTAT
1 TTTTTAT
72293818 TTTTTAT
1 TTTTTAT
72293825 TTTTTAT
1 TTTTTAT
72293832 TTTTTA
1 TTTTTA
72293838 GTAGATTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTAT
Found at i:72296701 original size:35 final size:34
Alignment explanation
Indices: 72296654--72296719 Score: 123
Period size: 35 Copynumber: 1.9 Consensus size: 34
72296644 TTCCTTGGGG
72296654 TTCGACATCTGGTCTTGCTAAAACTATACTACTA
1 TTCGACATCTGGTCTTGCTAAAACTATACTACTA
72296688 TTCGACAATCTGGTCTTGCTAAAACTATACTA
1 TTCGAC-ATCTGGTCTTGCTAAAACTATACTA
72296720 TGCGATAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 6 0.19
35 25 0.81
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (34 bp):
TTCGACATCTGGTCTTGCTAAAACTATACTACTA
Found at i:72300055 original size:28 final size:28
Alignment explanation
Indices: 72300023--72300086 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
72300013 ATACCTATAT
72300023 ATGGCCCACTAGACCCAATTATATTCAC
1 ATGGCCCACTAGACCCAATTATATTCAC
*
72300051 ATGGCACACTAGACCCAATTATATTCAC
1 ATGGCCCACTAGACCCAATTATATTCAC
72300079 ATGGCCCA
1 ATGGCCCA
72300087 TTAGGCCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.33, C:0.31, G:0.12, T:0.23
Consensus pattern (28 bp):
ATGGCCCACTAGACCCAATTATATTCAC
Found at i:72300121 original size:29 final size:29
Alignment explanation
Indices: 72300079--72300210 Score: 185
Period size: 29 Copynumber: 4.6 Consensus size: 29
72300069 TTATATTCAC
* *
72300079 ATGGCCCATTAGGCCTAAGTCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
72300108 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
72300137 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
* **
72300166 GTGGCCCATTAGGCCCAAATCACATCCAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
72300195 ACGG-CCATTAGGCCCA
1 ATGGCCCATTAGGCCCA
72300211 GTTTACATTT
Statistics
Matches: 94, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 12 0.13
29 82 0.87
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTTAT
Found at i:72305973 original size:40 final size:40
Alignment explanation
Indices: 72305918--72306154 Score: 300
Period size: 40 Copynumber: 5.9 Consensus size: 40
72305908 GAATGCTTAA
*
72305918 TAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 TAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
72305958 TAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATTTGTG-
1 TAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
72305997 TGAGTTACTAATTACGGGCTAAGTCCCGAAGGCATTTGTG-
1 T-AGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
72306037 TGAGTTACTAATTCCGGGCTAAGTCCCGAAGGTATTTGTAC
1 T-AGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
72306078 GAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 TAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTGC
* ** * ***
72306118 GAACTACTATTTCCAATCTAAGTCCCGAAGGCATTTG
1 TAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTG
72306155 AGCGAGTAGC
Statistics
Matches: 177, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 173 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
TAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
Found at i:72306139 original size:120 final size:120
Alignment explanation
Indices: 72305923--72306154 Score: 331
Period size: 120 Copynumber: 1.9 Consensus size: 120
72305913 CTTAATAGTG
* *
72305923 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAAG
1 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTAATTCCGGGCTAAGTCCCAAAG
* ** **
72305988 GCATTTGTGTGAGTTACTAATTACGGGCTAAGTCCCGAAGGCATTTGTGTGAGTT
66 GCATTTGTGCGAACTACTAATTACAAGCTAAGTCCCGAAGGCATTTGTGTGAGTT
* * *
72306043 ACTAATTCCGGGCTAAGTCCCGAAGGTATTTGTACGAGTTACT-ATATCCGGGCTAAGTCCCGAA
1 ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTAAT-TCCGGGCTAAGTCCCAAA
* * *
72306107 GGCATTTGTGCGAACTACTATTTCCAATCTAAGTCCCGAAGGCATTTG
65 GGCATTTGTGCGAACTACTAATTACAAGCTAAGTCCCGAAGGCATTTG
72306155 AGCGAGTAGC
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
119 2 0.02
120 96 0.98
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (120 bp):
ACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTGACTAATTCCGGGCTAAGTCCCAAAG
GCATTTGTGCGAACTACTAATTACAAGCTAAGTCCCGAAGGCATTTGTGTGAGTT
Found at i:72306161 original size:80 final size:80
Alignment explanation
Indices: 72305929--72306187 Score: 303
Period size: 80 Copynumber: 3.2 Consensus size: 80
72305919 AGTGACTAAT
* * *
72305929 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACTAATTCCGGGCTAAGTCCCAAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACT-ACTAATTCCGGGCTAAGTCCCGAAGGCATT
* *
72305993 TGTGTGAGTTACTA-A
65 TGAGCGAGTTACTATA
* * ** *
72306008 TTACGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAATTCCGGGCTAAGTCCCGAAGGTATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATT
72306073 TGTA-CGAGTTACTATA
65 TG-AGCGAGTTACTATA
* ***
72306089 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATTTCCAATCTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTT
72306154 GAGCGAG-TAGCTATA
66 GAGCGAGTTA-CTATA
* *
72306169 TCC-GGTTAAATCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
72306188 TACTTGGTTT
Statistics
Matches: 154, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
79 17 0.11
80 135 0.88
81 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTT
GAGCGAGTTACTATA
Found at i:72307944 original size:28 final size:28
Alignment explanation
Indices: 72307901--72307957 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
72307891 CTGTATATGT
72307901 CCCACTAGACCCAATTATATTCACATGG
1 CCCACTAGACCCAATTATATTCACATGG
* *
72307929 CCCACTAGACCTAATTATATTGACATGG
1 CCCACTAGACCCAATTATATTCACATGG
72307957 C
1 C
72307958 ACATTAGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.26
Consensus pattern (28 bp):
CCCACTAGACCCAATTATATTCACATGG
Found at i:72307995 original size:29 final size:29
Alignment explanation
Indices: 72307953--72308084 Score: 194
Period size: 29 Copynumber: 4.6 Consensus size: 29
72307943 TTATATTGAC
* *
72307953 ATGGCACATTAGGCCCAAGTCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
72307982 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
72308011 ATGGCCCTTTAGGCCCAAATCACATTTAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
* *
72308040 GTGGCCCATTAGGCCCAAATCACATTCAT
1 ATGGCCCATTAGGCCCAAATCACATTTAT
*
72308069 AT-GACCATTAGGCCCA
1 ATGGCCCATTAGGCCCA
72308085 GTTTACATTT
Statistics
Matches: 95, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 13 0.14
29 82 0.86
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (29 bp):
ATGGCCCATTAGGCCCAAATCACATTTAT
Found at i:72310135 original size:16 final size:18
Alignment explanation
Indices: 72310109--72310142 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
72310099 TATTAATTTT
72310109 AAAAGGTTAAAT-ATGTA
1 AAAAGGTTAAATAATGTA
72310126 AAAAGG-TAAATAATGTA
1 AAAAGGTTAAATAATGTA
72310143 TATGATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.26
Consensus pattern (18 bp):
AAAAGGTTAAATAATGTA
Found at i:72311114 original size:43 final size:42
Alignment explanation
Indices: 72311028--72311136 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 42
72311018 ATATAGGATT
* * *
72311028 TCGATATGTGTTCTCGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGAT-TCGTGTAAGACCACGTCTGGGACATCGGCA
* * *
72311071 TCGATATGTGATTACGTGTAAGATCATGTCTGGGCCATCGGCA
1 TCGATATGTGATT-CGTGTAAGACCACGTCTGGGACATCGGCA
*
72311114 TTG-TAAT-TGATTCGTGTAAGACC
1 TCGAT-ATGTGATTCGTGTAAGACC
72311137 CAATTTAGAC
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
41 10 0.18
42 7 0.12
43 39 0.70
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (42 bp):
TCGATATGTGATTCGTGTAAGACCACGTCTGGGACATCGGCA
Found at i:72319059 original size:43 final size:41
Alignment explanation
Indices: 72318975--72319090 Score: 115
Period size: 43 Copynumber: 2.8 Consensus size: 41
72318965 TAGGATTTCG
* * * * **
72318975 ATATGTGTTCTCGTGTAAGACTACGTCTGGGACGTTGGCATC
1 ATATGTGAT-TCGTGTAAGACCATGTCTGGGACATCAGCATC
72319017 AATATGTGATTACGTGTAAGACCATGTCTGGGACATCAGCATC
1 -ATATGTGATT-CGTGTAAGACCATGTCTGGGACATCAGCATC
* * * *
72319060 GTATTTGATTCGTGTAAGACCCTATCTGGGA
1 ATATGTGATTCGTGTAAGACCATGTCTGGGA
72319091 TAGTGGCATC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
41 19 0.31
42 9 0.15
43 34 0.55
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (41 bp):
ATATGTGATTCGTGTAAGACCATGTCTGGGACATCAGCATC
Found at i:72331263 original size:40 final size:40
Alignment explanation
Indices: 72331212--72331441 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
72331202 GGATATAGCC
*
72331212 ACTCGCTCAAATGCCTTCGGGACTTAGCCCG-AATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAAT-TAGTA
** *
72331252 GTTCGCACAAATGCCTTCGGGACTTAGCCCGATA-TAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
*
72331291 ACTCGCACAAATGCTTTCGGGACTTAGCCCGAAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
*
72331331 ACTTGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
*
72331371 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
*
72331411 ACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
72331442 GTTATCATCC
Statistics
Matches: 175, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 35 0.20
40 139 0.79
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
Found at i:72336157 original size:47 final size:47
Alignment explanation
Indices: 72336106--72337267 Score: 2025
Period size: 47 Copynumber: 24.7 Consensus size: 47
72336096 TTAGGATTCT
* * * * *
72336106 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGACCTAATGGCTG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
72336153 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72336200 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC-
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
72336246 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
72336293 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
72336340 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
72336387 ATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72336434 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72336481 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72336528 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
72336574 ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
72336621 ATGTGATGAATGTGAAAATGTATATATATGTGACAAGGCCTAATGGCCG
1 ATGTGATGAATGTG-AAA-GTGTATATATGTGATAAGGCCTAATGGCCG
72336670 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72336717 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72336764 A-GTG-TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
72336809 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAGGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72336856 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
72336905 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72336952 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72336999 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
72337046 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
72337094 ATGTGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
72337140 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
72337187 ATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
72337233 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
72337268 TCCGAACGGC
Statistics
Matches: 1078, Mismatches: 23, Indels: 28
0.95 0.02 0.02
Matches are distributed among these distances:
45 58 0.05
46 160 0.15
47 725 0.67
48 30 0.03
49 105 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:72336299 original size:22 final size:22
Alignment explanation
Indices: 72336271--72336393 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
72336261 AAGTGTATAT
72336271 ATGTGATAAGGCCTAATGGCTG
1 ATGTGATAAGGCCTAATGGCTG
* *** ** *
72336293 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAT-AAGGCCTAA-TGGCT-G
72336318 ATGTGATAAGGCCTAATGGCTG
1 ATGTGATAAGGCCTAATGGCTG
* *** ** *
72336340 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAT-AAGGCCTAA-TGGCT-G
72336365 ATGTGATAAGGCCTAATGGCTG
1 ATGTGATAAGGCCTAATGGCTG
72336387 ATGTGAT
1 ATGTGAT
72336394 GAATGTGAAA
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
22 21 0.31
23 16 0.24
24 16 0.24
25 14 0.21
ACGTcount: A:0.31, C:0.07, G:0.30, T:0.32
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCTG
Found at i:72337441 original size:37 final size:37
Alignment explanation
Indices: 72337390--72337463 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
72337380 CTCTAAACAT
* * *
72337390 CCGATGACTACGTGTGGGGATTTTGTCCGGGTAAGAC
1 CCGATAACTACGTGTGGAGATTATGTCCGGGTAAGAC
*
72337427 CCGATAACTTCGTGTGGAGATTATGTCCGGGTAAGAC
1 CCGATAACTACGTGTGGAGATTATGTCCGGGTAAGAC
72337464 TTCGTAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.32, T:0.27
Consensus pattern (37 bp):
CCGATAACTACGTGTGGAGATTATGTCCGGGTAAGAC
Found at i:72338790 original size:39 final size:40
Alignment explanation
Indices: 72338661--72338967 Score: 408
Period size: 40 Copynumber: 7.8 Consensus size: 40
72338651 GAGAATTGAG
* * *
72338661 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
72338701 AGTGATGTATCCAGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
72338741 AGTGATGTATCGGGGCTAAGTCTCGAAGAGCATT-GTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
72338780 AGTGATGTATCCGGGCTAAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCT-AAGTCTCGAAGAGCATTCGTGCT
72338821 AGTGA-GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
*
72338860 AGTGAT-TATCCGGGCTAAAT-TCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCGTGCT
* * * * *
72338899 AGTAATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
* * * * * *
72338938 GGTGTTATATCCAGGCTAGGTCCCGAAGAG
1 AGTGATGTATCCGGGCTAAGTCTCGAAGAG
72338968 TAATCATGCT
Statistics
Matches: 241, Mismatches: 19, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
38 1 0.00
39 114 0.47
40 116 0.48
41 10 0.04
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
Found at i:72338798 original size:79 final size:80
Alignment explanation
Indices: 72338661--72338967 Score: 408
Period size: 79 Copynumber: 3.9 Consensus size: 80
72338651 GAGAATTGAG
*
72338661 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCG
72338726 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * *
72338741 AGTGATGTATCGGGGCTAAGTCTCGAAGAGCATT-GTGCTAGTGATGTATCCGGGCTAAAGTCTC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCT-AAGTCTC
72338805 GAAGAGCATTCGTGCT
65 GAAGAGCATTCGTGCT
* * * *
72338821 AGTGA-GTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGAT-TATCCGGGCTAAAT-TCC
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCT-C
72338883 GAAGAGCATTCGTGCT
65 GAAGAGCATTCGTGCT
* * * * * * * *
72338899 AGTAATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCAGGCTAGGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCG
72338963 AAGAG
66 AAGAG
72338968 TAATCATGCT
Statistics
Matches: 203, Mismatches: 18, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
77 1 0.00
78 46 0.23
79 87 0.43
80 69 0.34
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (80 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTCG
AAGAGCATTCGTGCT
Found at i:72338898 original size:119 final size:120
Alignment explanation
Indices: 72338661--72338967 Score: 437
Period size: 119 Copynumber: 2.6 Consensus size: 120
72338651 GAGAATTGAG
*
72338661 AGTGATATATCCGGGCT-AAGTCCCGAGGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTC
1 AGTGATATATCCGGGCTAAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTC
*
72338725 GAAGAGCATTCGTGCTAGTGATGTATCGGGGCTAAGTCTCGAAGAGCATTGTGCT
66 GAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTGTGCT
* * *
72338780 AGTGATGTATCCGGGCTAAAGTCTCGAAGAGCATTCGTGCTAGTGA-GTATCCGGGCTAAGTCTC
1 AGTGATATATCCGGGCTAAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTC
*
72338844 GAAGAGCATTCGTGCTAGTGAT-TATCCGGGCTAAAT-TCCGAAGAGCATTCGTGCT
66 GAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATT-GTGCT
* * * * * * *
72338899 AGTAATATATCCGTGCTAAA--CCCGAAGAGCATTCGTGCTGGTGTTATATCCAGGCTAGGTCCC
1 AGTGATATATCCGGGCTAAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTC
72338962 GAAGAG
66 GAAGAG
72338968 TAATCATGCT
Statistics
Matches: 168, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
117 22 0.13
118 43 0.26
119 77 0.46
120 26 0.15
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (120 bp):
AGTGATATATCCGGGCTAAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCTC
GAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTGTGCT
Done.