Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 215 of 345
Found at i:72974668 original size:47 final size:47
Alignment explanation
Indices: 72974596--72974726 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
72974586 CACAATCGAT
* * * * * *
72974596 AAGTACTTATACCATGCCCCGTAGCCAAATTAAGGTAACTTATCCCG
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCA
* * * *
72974643 GAGTACCTATACCATGGCCCATAGCCAAATCAAGGTTACTCCTCTCA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCA
* *
72974690 AAATACCTATATCATGGCCCATAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
72974727 TTATTCGTAC
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCA
Found at i:72980727 original size:43 final size:44
Alignment explanation
Indices: 72980680--72980765 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
72980670 TTGATATCTT
* *
72980680 AAAGTCCATGTT-GTACCATGGA-AATTAAGGAAGAATTGACGGA
1 AAAGTCCATGTTCATAACAT-GACAATTAAGGAAGAATTGACGGA
* *
72980723 AAAGTCCATGTTCATAACATGACATTTAAGGAGGAATTGACGG
1 AAAGTCCATGTTCATAACATGACAATTAAGGAAGAATTGACGG
72980766 TTAAGGATAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 14 0.38
44 23 0.62
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.24
Consensus pattern (44 bp):
AAAGTCCATGTTCATAACATGACAATTAAGGAAGAATTGACGGA
Found at i:72981081 original size:55 final size:53
Alignment explanation
Indices: 72980956--72981153 Score: 157
Period size: 55 Copynumber: 3.6 Consensus size: 53
72980946 TGGTAAGATG
* * * * * * *
72980956 AGGATATCATGTAAGAGACCATG-CGAAGGCAAGGGATTGATAAGTTCTATAAGGTA
1 AGGATACCATGT-A-AGACCATGTC-AAGACATGGCATTGATGAGTTC-ATAAAGCA
* *
72981012 AGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAAGCAA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-C-ATAAAGC-A
* * * * * **
72981068 AGG-TCCCATGTAAGACCATGCCAAGGCATGGCGTTGGTGAGTTCATATGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAAGCA
* *
72981120 AGGATAGCACGTAAGACCATGTCAAGACATGGCA
1 AGGATACCATGTAAGACCATGTCAAGACATGGCA
72981154 ATGGTAAGTT
Statistics
Matches: 116, Mismatches: 22, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
52 4 0.03
53 29 0.25
54 26 0.22
55 42 0.36
56 15 0.13
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (53 bp):
AGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCATAAAGCA
Found at i:72986709 original size:14 final size:15
Alignment explanation
Indices: 72986686--72986718 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
72986676 TTTTATTAGG
*
72986686 TTTTATAATTTTT-A
1 TTTTACAATTTTTAA
72986700 TTTTACAATTTTTAA
1 TTTTACAATTTTTAA
72986715 TTTT
1 TTTT
72986719 GGCTATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTACAATTTTTAA
Found at i:72992210 original size:13 final size:13
Alignment explanation
Indices: 72992192--72992256 Score: 84
Period size: 13 Copynumber: 5.3 Consensus size: 13
72992182 TCCTCCTATC
72992192 TTTTTATTCTTAT
1 TTTTTATTCTTAT
72992205 TTTTTATTCTTAT
1 TTTTTATTCTTAT
72992218 TTTTT-TT-TTA-
1 TTTTTATTCTTAT
*
72992228 TTTTTATTTTTA-
1 TTTTTATTCTTAT
*
72992240 TTTTTATTTTTAT
1 TTTTTATTCTTAT
72992253 TTTT
1 TTTT
72992257 ATTTTTCCTT
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
10 5 0.10
11 5 0.10
12 17 0.35
13 22 0.45
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTATTCTTAT
Found at i:72992217 original size:6 final size:6
Alignment explanation
Indices: 72992192--72992262 Score: 108
Period size: 6 Copynumber: 11.8 Consensus size: 6
72992182 TCCTCCTATC
* *
72992192 TTTTTA TTCTTA TTTTTTA TTCTTA TTTTT- TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
72992240 TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTT
72992263 CCTTTTCTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
5 5 0.08
6 49 0.83
7 5 0.08
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:72992268 original size:24 final size:23
Alignment explanation
Indices: 72992193--72992298 Score: 95
Period size: 24 Copynumber: 4.4 Consensus size: 23
72992183 CCTCCTATCT
* *
72992193 TTTTATTCTTATTTTTTATTCTTA
1 TTTTATTTTTA-TTTTTATTTTTA
*
72992217 TTTTTTTTTTATTTTTATTTTTA
1 TTTTATTTTTATTTTTATTTTTA
*
72992240 TTTTTATTTTTATTTTTATTTTTCC
1 -TTTTATTTTTATTTTTATTTTT-A
* * **
72992265 TTTTCTTTTCATTTCAATTTGATTA
1 TTTTATTTTTATTTTTATTT--TTA
72992290 TTTTATTTT
1 TTTTATTTT
72992299 ACAAGACATA
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
23 11 0.16
24 46 0.69
25 8 0.12
26 2 0.03
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.77
Consensus pattern (23 bp):
TTTTATTTTTATTTTTATTTTTA
Found at i:72996957 original size:31 final size:31
Alignment explanation
Indices: 72996914--72997028 Score: 214
Period size: 31 Copynumber: 3.7 Consensus size: 31
72996904 TTAGTCTTGA
*
72996914 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
72996944 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
72996975 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
72997006 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
72997029 ACTATAAACG
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
30 5 0.06
31 78 0.94
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:72997102 original size:42 final size:42
Alignment explanation
Indices: 72997051--72997142 Score: 157
Period size: 42 Copynumber: 2.2 Consensus size: 42
72997041 ATGCCCTTAG
*
72997051 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
* *
72997093 GCCTATTTCAGTATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
72997135 GCCCATTT
1 GCCCATTT
72997143 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:72997318 original size:25 final size:25
Alignment explanation
Indices: 72997290--72997359 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
72997280 CTCTTTTAAT
*
72997290 AACTGGGGCAAAG-TCTTTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
72997315 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
72997340 AACTAGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
72997360 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 34 0.85
26 6 0.15
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:72998198 original size:27 final size:27
Alignment explanation
Indices: 72998168--72998232 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
72998158 GGGCATATTC
72998168 GTCATTTTACCATACAAGG-G-TATTACG
1 GTCATTTTACCATAC-AGGTGCT-TTACG
* *
72998195 GTCACTTTCCCATACAGGTGCTTTACG
1 GTCATTTTACCATACAGGTGCTTTACG
*
72998222 GTCTTTTTACC
1 GTCATTTTACC
72998233 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
26 3 0.10
27 27 0.87
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGTGCTTTACG
Found at i:72998364 original size:29 final size:28
Alignment explanation
Indices: 72998286--72998366 Score: 85
Period size: 28 Copynumber: 2.9 Consensus size: 28
72998276 GTAAATCTAC
* *
72998286 AAACCAAGGGTATTTCAGTAA-TTTTAT
1 AAACCAAGGGTATTTCTGTAATTTTTAG
* *
72998313 AAACCAATGGTAATTT-TATAATTTTTAG
1 AAACCAAGGGT-ATTTCTGTAATTTTTAG
*
72998341 AAAGTCAAGGGTATTTCTGTAATTTT
1 AAA-CCAAGGGTATTTCTGTAATTTT
72998367 GTAAATCATG
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
27 13 0.30
28 16 0.37
29 14 0.33
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.41
Consensus pattern (28 bp):
AAACCAAGGGTATTTCTGTAATTTTTAG
Found at i:72998399 original size:27 final size:27
Alignment explanation
Indices: 72998271--72998418 Score: 102
Period size: 27 Copynumber: 5.4 Consensus size: 27
72998261 TACAAAGGTG
* * *
72998271 TTTTGGTAAATCTACAAACCAAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
** * * *
72998298 TTTCAGTAATTTTATAAACCAATGGTAA
1 TTTTGGTAATTTTACAAATCAAGGGT-A
* *
72998326 TTTT-ATAATTTTTAGAAAGTCAAGGGTA
1 TTTTGGTAA-TTTTACAAA-TCAAGGGTA
** *
72998354 TTTCT-GTAATTTTGTAAATCATGGGTA
1 TTT-TGGTAATTTTACAAATCAAGGGTA
**
72998381 TTTTGGTAATTTTACAAATTGAGGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTA
*
72998408 TTTTGTTAATT
1 TTTTGGTAATT
72998419 CTATCCTACA
Statistics
Matches: 95, Mismatches: 21, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
26 1 0.01
27 61 0.64
28 23 0.24
29 10 0.11
ACGTcount: A:0.32, C:0.07, G:0.17, T:0.43
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAATCAAGGGTA
Found at i:72998592 original size:81 final size:81
Alignment explanation
Indices: 72998453--72998669 Score: 326
Period size: 81 Copynumber: 2.7 Consensus size: 81
72998443 ATTTCACAAC
* *
72998453 CGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAAATGGTAATTTTGTAAATCGAGGGTAAA
1 CGAGGGTAAAATGGTAATTCTGTAAACTGAGGGT-AAAATGGTAATTTTATAAATCGAGGGTAAA
72998518 ACGGTAATTCTATAAAT
65 ACGGTAATTCTATAAAT
* * *
72998535 TGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAA
1 CGAGGGTAAAATGGTAATTCTGTAAACTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAA
*
72998600 TGGTAATTCTATAAAT
66 CGGTAATTCTATAAAT
* *** *
72998616 CGAGGGTAAAATGGTAATTCTGTAAACCGAGGGTACTTTGGTAATTTTACAAAT
1 CGAGGGTAAAATGGTAATTCTGTAAACTGAGGGTAAAATGGTAATTTTATAAAT
72998670 TAAGGGCATT
Statistics
Matches: 121, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
81 91 0.75
82 30 0.25
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (81 bp):
CGAGGGTAAAATGGTAATTCTGTAAACTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAA
CGGTAATTCTATAAAT
Found at i:72998661 original size:27 final size:27
Alignment explanation
Indices: 72998453--72998650 Score: 281
Period size: 27 Copynumber: 7.3 Consensus size: 27
72998443 ATTTCACAAC
* *
72998453 CGAGGGTAAAATGGTAATTTTGTAAA-
1 CGAGGGTAAAATGGTAATTCTATAAAT
* *
72998479 CTGAGGGTAAAAATGGTAATTTTGTAAAT
1 C-GAGGGT-AAAATGGTAATTCTATAAAT
*
72998508 CGAGGGTAAAACGGTAATTCTATAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
*
72998535 TGAGGGTAAAATGGTAATTCTATAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
* *
72998562 TGAGGGTAAAATGGTAATTTTATAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
72998589 CGAGGGTAAAATGGTAATTCTATAAAT
1 CGAGGGTAAAATGGTAATTCTATAAAT
* *
72998616 CGAGGGTAAAATGGTAATTCTGTAAAC
1 CGAGGGTAAAATGGTAATTCTATAAAT
72998643 CGAGGGTA
1 CGAGGGTA
72998651 CTTTGGTAAT
Statistics
Matches: 159, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
26 1 0.01
27 132 0.83
28 25 0.16
29 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.25, T:0.30
Consensus pattern (27 bp):
CGAGGGTAAAATGGTAATTCTATAAAT
Found at i:73001046 original size:42 final size:42
Alignment explanation
Indices: 73000999--73001134 Score: 263
Period size: 42 Copynumber: 3.2 Consensus size: 42
73000989 TATGGCCCTT
*
73000999 AAGCCCATTTCAATATCACATGTAATGTCAATGGATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
73001041 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
73001083 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
1 AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
73001125 AAGCCCATTT
1 AAGCCCATTT
73001135 GGGGAGACTA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 93 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.31
Consensus pattern (42 bp):
AAGCCCATTTCAATATCACATGTAATGTCAATGAATGTATGC
Found at i:73002111 original size:27 final size:27
Alignment explanation
Indices: 73002081--73002145 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
73002071 GGGCATATTC
73002081 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * * *
73002108 GTCACTTTCCCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
73002135 GTCTTTTTACC
1 GTCATTTTACC
73002146 TATTAGGGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
27 29 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:73002312 original size:27 final size:27
Alignment explanation
Indices: 73002263--73002331 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
73002253 GAAAGTCAAT
**
73002263 GGTATTTCT-GTAATTTTGTAAATCAG-G
1 GGTATTT-TGGTAATTTTACAAAT-AGAG
*
73002290 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTGGTAATTTTACAAATAGAG
*
73002317 GGTATTTCGGTAATT
1 GGTATTTTGGTAATT
73002332 CTATCCTACA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 2 0.06
27 34 0.94
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.45
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAATAGAG
Found at i:73002551 original size:27 final size:27
Alignment explanation
Indices: 73002363--73002562 Score: 260
Period size: 27 Copynumber: 7.4 Consensus size: 27
73002353 GTAATTTCAC
73002363 AATCGAGGGTAAAATGGTAAATT-TGTA
1 AATCGAGGGTAAAATGGT-AATTCTGTA
*
73002390 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
* *
73002417 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
73002444 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* ** *
73002471 GATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
73002498 AATTGAGAGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
73002525 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
73002552 AACCGAGGGTA
1 AATCGAGGGTA
73002563 CTTTGGTAAT
Statistics
Matches: 153, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.03
27 147 0.96
28 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:73002600 original size:81 final size:80
Alignment explanation
Indices: 73002350--73002587 Score: 214
Period size: 81 Copynumber: 3.0 Consensus size: 80
73002340 CAGGGGTATT
* * *
73002350 TCAGTAATT-TCACAATCGAGGGTAAAATGGTAAATTTGTAAACTGAGGGTAAAATGGTAATTTT
1 TCAGTAATTCTTA-AATCGAGGGTAAAATGGTAATTTTGTAAACCGAGGGTAAAATGGTAATTTT
**
73002414 -GTAAATCGAGGGTAAAA
65 ACAAAAT-GAGGG-AAAA
* * * * * ** *
73002431 -CGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAGATCGAGGGTAAAACAGTAATTCT
1 TCAGTAATTCT-TAAATCGAGGGTAAAATGGTAATTTTGTAAACCGAGGGTAAAATGGTAATTTT
* * *
73002495 ATAAATTGAGAGTAAAA
65 ACAAAATGAG-GGAAAA
* ***
73002512 T-GGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTGTAAACCGAGGGTACTTTGGTAATTTT
1 TCAGTAATTCT-TAAATCGAGGGTAAAATGGTAATTTTGTAAACCGAGGGTAAAATGGTAATTTT
73002576 ACAAAATGAGGG
65 ACAAAATGAGGG
73002588 CATTTCAGTA
Statistics
Matches: 123, Mismatches: 29, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
80 8 0.07
81 110 0.89
82 5 0.04
ACGTcount: A:0.38, C:0.08, G:0.24, T:0.30
Consensus pattern (80 bp):
TCAGTAATTCTTAAATCGAGGGTAAAATGGTAATTTTGTAAACCGAGGGTAAAATGGTAATTTTA
CAAAATGAGGGAAAA
Found at i:73004622 original size:40 final size:39
Alignment explanation
Indices: 73004538--73004721 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
73004528 TCGAATGATG
* * * *
73004538 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
73004578 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
73004618 TCCGGGCTAAG-CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
73004656 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
73004697 -CCGGGCTATA-TCCCGAAGGCATTTG
1 TCCGGGCTA-AGT-CCGAAGGCATTTG
73004722 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 34 0.27
40 79 0.64
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:73004753 original size:78 final size:78
Alignment explanation
Indices: 73004591--73004746 Score: 183
Period size: 78 Copynumber: 2.0 Consensus size: 78
73004581 GGACTAAGAT
* * **
73004591 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAACCCGAAGGCATTGGAACGAGTTACTAAA
*
73004656 TCCGGGTTAAGTC
66 TCCGGGTTAAATC
* *
73004669 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATATCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTA-A-CCCGAAGGCATTGGAACGAGTTA-C
*
73004732 TATATCC-GGTTAAAT
62 TAAATCCGGGTTAAAT
73004747 TCGAAGGTAC
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
77 2 0.03
78 31 0.47
79 10 0.15
80 23 0.35
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAACCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAATC
Found at i:73008327 original size:31 final size:31
Alignment explanation
Indices: 73008211--73008326 Score: 198
Period size: 31 Copynumber: 3.8 Consensus size: 31
73008201 TTAGTCTTGA
*
73008211 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
73008241 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
73008272 CATATCACTGGGCCGAAGCCTTTTTATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
73008303 CATATCACTGGGCCGAAGCCTTTT
1 CATATCACTGGGCCGAAGCCTTTT
73008327 TGGCCTATTT
Statistics
Matches: 81, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:73008425 original size:42 final size:42
Alignment explanation
Indices: 73008333--73008502 Score: 308
Period size: 41 Copynumber: 4.1 Consensus size: 42
73008323 TTTTTGGCCT
* *
73008333 ATTTCAATATCACATGTAATGTCAATGGATTTA-GCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
73008374 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
73008416 ATTTCAATATCACATGTAATGTC-ATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
73008457 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
73008499 ATTT
1 ATTT
73008503 GGGGAGACTA
Statistics
Matches: 125, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
41 72 0.58
42 53 0.42
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (42 bp):
ATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGCCC
Found at i:73008472 original size:83 final size:83
Alignment explanation
Indices: 73008333--73008502 Score: 306
Period size: 83 Copynumber: 2.0 Consensus size: 83
73008323 TTTTTGGCCT
* *
73008333 ATTTCAATATCACATGTAATGTCAATGGATTTAGCAAGCCCATTTCAATATCACATGTAATGTCA
1 ATTTCAATATCACATGTAATGTCAATGAATGTAGCAAGCCCATTTCAATATCACATGTAATGTCA
73008398 ATGAATGTATGCAAGCCC
66 ATGAATGTATGCAAGCCC
73008416 ATTTCAATATCACATGTAATGTC-ATGAATGTATGCAAGCCCATTTCAATATCACATGTAATGTC
1 ATTTCAATATCACATGTAATGTCAATGAATGTA-GCAAGCCCATTTCAATATCACATGTAATGTC
73008480 AATGAATGTATGCAAGCCC
65 AATGAATGTATGCAAGCCC
73008499 ATTT
1 ATTT
73008503 GGGGAGACTA
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
82 7 0.08
83 77 0.92
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (83 bp):
ATTTCAATATCACATGTAATGTCAATGAATGTAGCAAGCCCATTTCAATATCACATGTAATGTCA
ATGAATGTATGCAAGCCC
Found at i:73008678 original size:25 final size:24
Alignment explanation
Indices: 73008650--73008716 Score: 100
Period size: 25 Copynumber: 2.8 Consensus size: 24
73008640 CTCTTTTAAT
73008650 AACTGGGGCAAAGCCCTTTCTGATA
1 AACTGGGGCAAAGCCCTTTC-GATA
*
73008675 AACTGGGGCAAAGCCCTTTCGGTA
1 AACTGGGGCAAAGCCCTTTCGATA
*
73008699 AACT-GGGCAGAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
73008717 TAGCACTTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.32
24 7 0.17
25 20 0.50
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.22
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTCGATA
Found at i:73009658 original size:27 final size:27
Alignment explanation
Indices: 73009628--73009760 Score: 106
Period size: 27 Copynumber: 4.9 Consensus size: 27
73009618 GTAAATCTAC
*
73009628 AAACTAAGGGTATTTCAATAATTTTAT
1 AAACTAAGGGTATTTCTATAATTTTAT
* * * *
73009655 AAACCAATGGTATTTTTATAATTTTTAA
1 AAACTAAGGGTATTTCTATAA-TTTTAT
* * *
73009683 AAAGTCAAGGGTATTTCTGTAATTTTGT
1 AAACT-AAGGGTATTTCTATAATTTTAT
* * * *
73009711 AAATTAGGGGTATTT-TGGTAATTTTAC
1 AAACTAAGGGTATTTCT-ATAATTTTAT
* *
73009738 AAATTAAGGGTATTTCTGTAATT
1 AAACTAAGGGTATTTCTATAATT
73009761 CTATCCTACA
Statistics
Matches: 85, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
26 1 0.01
27 54 0.64
28 17 0.20
29 13 0.15
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.44
Consensus pattern (27 bp):
AAACTAAGGGTATTTCTATAATTTTAT
Found at i:73009822 original size:27 final size:26
Alignment explanation
Indices: 73009795--73009964 Score: 196
Period size: 27 Copynumber: 6.3 Consensus size: 26
73009785 ATTTCACAAC
*
73009795 TGAGGGTAAAATGGTAATTTTGTAAA
1 TGAGGGTAAAATGGTAATTCTGTAAA
* *
73009821 CTAAGGGTAAAATGGTAATTTTGTAAA
1 -TGAGGGTAAAATGGTAATTCTGTAAA
* *
73009848 TCGAGGGTAAAACGGTAATTCTATAAA
1 T-GAGGGTAAAATGGTAATTCTGTAAA
* *
73009875 TCGAGGGTAAAACGGTAATTCTATAAA
1 T-GAGGGTAAAATGGTAATTCTGTAAA
* *
73009902 TTGAGGGTAAAATGGTGATTCTGCAAA
1 -TGAGGGTAAAATGGTAATTCTGTAAA
*
73009929 TCGAGGGCAAAATGGTAATTCTGTAAA
1 T-GAGGGTAAAATGGTAATTCTGTAAA
73009956 CTGAGGGTA
1 -TGAGGGTA
73009965 CTTTGGTAAT
Statistics
Matches: 126, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
26 2 0.02
27 122 0.97
28 2 0.02
ACGTcount: A:0.38, C:0.08, G:0.26, T:0.29
Consensus pattern (26 bp):
TGAGGGTAAAATGGTAATTCTGTAAA
Found at i:73009973 original size:81 final size:81
Alignment explanation
Indices: 73009792--73009989 Score: 245
Period size: 81 Copynumber: 2.4 Consensus size: 81
73009782 GTAATTTCAC
* * * * * *
73009792 AACTGAGGGTAAAATGGTAATTTTGTAAACTAAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
1 AACTGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTCTGCAAATCGAGGGCA
73009857 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* * *
73009873 AA-TCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAATGGTGATTCTGCAAATCGAGGGC
1 AACT-GAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTCTGCAAATCGAGGGC
* *
73009937 AAAATGGTAATTCTGTA
65 AAAACGGTAATTCTATA
*** *
73009954 AACTGAGGGTACTTTGGTAATTTTACAAATTGAGGG
1 AACTGAGGGTAAAATGGTAATTTTATAAATTGAGGG
73009990 CATTTCAGTA
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
80 1 0.01
81 96 0.98
82 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (81 bp):
AACTGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTCTGCAAATCGAGGGCA
AAACGGTAATTCTATA
Found at i:73009983 original size:54 final size:53
Alignment explanation
Indices: 73009795--73009991 Score: 189
Period size: 54 Copynumber: 3.7 Consensus size: 53
73009785 ATTTCACAAC
* ** * * *
73009795 TGAGGGTAAAATGGTAATTTTGTAAA-CTAAGGGTAAAATGGTAATTTTGTAAA
1 TGAGGGTAAAATGGTAATTCTACAAATC-GAGGGCAAAATGGTAATTCTGTAAA
* * * * *
73009848 TCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAA
1 T-GAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAATGGTAATTCTGTAAA
* *
73009902 TTGAGGGTAAAATGGTGATTCTGCAAATCGAGGGCAAAATGGTAATTCTGTAAA
1 -TGAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAATGGTAATTCTGTAAA
*** * *
73009956 CTGAGGGTACTTTGGTAATTTTACAAATTGAGGGCA
1 -TGAGGGTAAAATGGTAATTCTACAAATCGAGGGCA
73009992 TTTCAGTAAT
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 116 0.97
55 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (53 bp):
TGAGGGTAAAATGGTAATTCTACAAATCGAGGGCAAAATGGTAATTCTGTAAA
Found at i:73012268 original size:31 final size:31
Alignment explanation
Indices: 73012223--73012306 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
73012213 TTAGTGTTGA
*
73012223 CATAT-ACTAGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
73012253 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
73012284 CATATCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
73012307 ACTATAAACT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:73012389 original size:42 final size:42
Alignment explanation
Indices: 73012330--73012463 Score: 232
Period size: 42 Copynumber: 3.2 Consensus size: 42
73012320 TGGCCCTTAG
*
73012330 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
* *
73012372 GCCCATTTCAATATCACATGTAATATCAATGAATGTTTGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
73012414 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCGA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
73012456 GCCCATTT
1 GCCCATTT
73012464 GGGAAGACTA
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 86 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:73012644 original size:25 final size:25
Alignment explanation
Indices: 73012611--73012680 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
73012601 CTCTTTTAAT
* *
73012611 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAGAGCCCTTTTC-GATA
*
73012636 AACTGGGGCAGAGCCCTTTTCGGTA
1 AACTGGGGCAGAGCCCTTTTCGATA
73012661 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAGAGCCCTTTT
73012681 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 37 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAGAGCCCTTTTCGATA
Found at i:73013684 original size:29 final size:28
Alignment explanation
Indices: 73013610--73013685 Score: 73
Period size: 29 Copynumber: 2.7 Consensus size: 28
73013600 AATCTACAAA
** *
73013610 CCAAGGGTATTTGAGTAA-TTTTATAAG
1 CCAAGGGTATTTCTGTAATTTTTAAAAG
* * *
73013637 CCAATGGTATTTTTATAATTTTTAGAAAG
1 CCAAGGGTATTTCTGTAATTTTTA-AAAG
*
73013666 TCAAGGGTATTTCTGTAATT
1 CCAAGGGTATTTCTGTAATT
73013686 CTGTAAATCA
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
27 14 0.37
28 5 0.13
29 19 0.50
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (28 bp):
CCAAGGGTATTTCTGTAATTTTTAAAAG
Found at i:73013967 original size:27 final size:27
Alignment explanation
Indices: 73013774--73013960 Score: 259
Period size: 27 Copynumber: 6.9 Consensus size: 27
73013764 TTTCACAACT
* * *
73013774 GAGGGTGAAATGGTAATTTTGTAAA-C
1 GAGGGTAAAATGGTAATTCTATAAATC
* *
73013800 TGAGGGTAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAATGGTAATTCTATAAATC
*
73013828 GAGGGTAAAATGGCAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
73013855 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
**
73013882 GAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
*
73013909 GAGGGTAAAATGGTAATTCTATAAATT
1 GAGGGTAAAATGGTAATTCTATAAATC
* *
73013936 AAGGGTAAAATGGTAATTCTGTAAA
1 GAGGGTAAAATGGTAATTCTATAAA
73013961 CCTAGGGAAC
Statistics
Matches: 147, Mismatches: 12, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
27 146 0.99
28 1 0.01
ACGTcount: A:0.40, C:0.06, G:0.24, T:0.30
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTATAAATC
Found at i:73013979 original size:81 final size:80
Alignment explanation
Indices: 73013775--73013994 Score: 262
Period size: 81 Copynumber: 2.7 Consensus size: 80
73013765 TTCACAACTG
* * *
73013775 AGGGTGAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATG
1 AGGGTAAAATGGTAATTCTGTAAACT-AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATG
*
73013840 GCAATTCTATAAATCG
65 GCAATTCTATAAATCA
* * ** *
73013856 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATG
1 AGGGTAAAATGGTAATTCTGTAAA-CTAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATG
* *
73013921 GTAATTCTATAAATTA
65 GCAATTCTATAAATCA
** * *
73013937 AGGGTAAAATGGTAATTCTGTAAACCTAGGG-AACTTTGGTAATTTTACAAATTGAGGG
1 AGGGTAAAATGGTAATTCTGTAAA-CTAGGGTAA-AATGGTAATTTTATAAATCGAGGG
73013995 CATTTCAGTA
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
80 2 0.02
81 113 0.97
82 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (80 bp):
AGGGTAAAATGGTAATTCTGTAAACTAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGG
CAATTCTATAAATCA
Found at i:73020067 original size:40 final size:40
Alignment explanation
Indices: 73019986--73020203 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
73019976 CAACCAAGTA
* * * *
73019986 CCTTTGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
73020025 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
73020065 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
73020105 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
73020145 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* *
73020185 CCATCGGGGCTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
73020204 TTATCATCTG
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 15 0.09
40 150 0.91
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:73022699 original size:17 final size:17
Alignment explanation
Indices: 73022677--73022714 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
73022667 GTTTCAACAC
73022677 TTTTAATGTTCTTTACA
1 TTTTAATGTTCTTTACA
73022694 TTTTAATGTTCTTTACA
1 TTTTAATGTTCTTTACA
73022711 TTTT
1 TTTT
73022715 TGAAATCCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.11, G:0.05, T:0.63
Consensus pattern (17 bp):
TTTTAATGTTCTTTACA
Found at i:73022731 original size:15 final size:15
Alignment explanation
Indices: 73022711--73022741 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
73022701 GTTCTTTACA
73022711 TTTTTGAAATCCTCG
1 TTTTTGAAATCCTCG
73022726 TTTTTGAAATCCTCG
1 TTTTTGAAATCCTCG
73022741 T
1 T
73022742 AAGTGATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.48
Consensus pattern (15 bp):
TTTTTGAAATCCTCG
Found at i:73023599 original size:46 final size:46
Alignment explanation
Indices: 73023549--73023668 Score: 213
Period size: 46 Copynumber: 2.6 Consensus size: 46
73023539 ATTTAGGCAT
73023549 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
73023595 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
73023641 CCGAACTCGTTGAGTTGAGTCCGAGTTC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
73023669 GTGAGATGTA
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.19, C:0.23, G:0.30, T:0.28
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:73033193 original size:7 final size:7
Alignment explanation
Indices: 73033183--73033300 Score: 69
Period size: 7 Copynumber: 15.9 Consensus size: 7
73033173 TTCGAAAATC
73033183 AAAAAAG
1 AAAAAAG
*
73033190 AAAAAAA
1 AAAAAAG
73033197 AACAAACAG
1 AA-AAA-AG
73033206 AAAAAAAG
1 -AAAAAAG
*
73033214 ACAAAA-
1 AAAAAAG
*
73033220 AAACAA-
1 AAAAAAG
73033226 AAAAAAG
1 AAAAAAG
*
73033233 AAAAAAAT
1 -AAAAAAG
*
73033241 AAAAAAT
1 AAAAAAG
*
73033248 AAAAAATA
1 AAAAAA-G
73033256 AAAAAAG
1 AAAAAAG
73033263 AAAAAAG
1 AAAAAAG
73033270 AAACAAGAG
1 AAA-AA-AG
* *
73033279 AGAAGAGG
1 A-AAAAAG
73033287 AAAAAAG
1 AAAAAAG
73033294 AGAAAAA
1 A-AAAAA
73033301 TAGAGAGGCC
Statistics
Matches: 88, Mismatches: 13, Indels: 19
0.73 0.11 0.16
Matches are distributed among these distances:
6 9 0.10
7 41 0.47
8 26 0.30
9 8 0.09
10 4 0.05
ACGTcount: A:0.81, C:0.04, G:0.12, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:73033194 original size:1 final size:1
Alignment explanation
Indices: 73033183--73033268 Score: 64
Period size: 1 Copynumber: 86.0 Consensus size: 1
73033173 TTCGAAAATC
* * * * * * * * * *
73033183 AAAAAAGAAAAAAAAACAAACAGAAAAAAAGACAAAAAAACAAAAAAAAGAAAAAAATAAAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
73033248 AAAAAATAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAA
73033269 GAAACAAGAG
Statistics
Matches: 61, Mismatches: 24, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.86, C:0.05, G:0.06, T:0.03
Consensus pattern (1 bp):
A
Found at i:73033194 original size:8 final size:8
Alignment explanation
Indices: 73033183--73033300 Score: 73
Period size: 8 Copynumber: 14.5 Consensus size: 8
73033173 TTCGAAAATC
73033183 AAAAAAGA
1 AAAAAAGA
73033191 AAAAAA-A
1 AAAAAAGA
*
73033198 ACAAACAGA
1 A-AAAAAGA
73033207 AAAAAAGACA
1 AAAAAAG--A
*
73033217 AAAAAACAA
1 AAAAAA-GA
73033226 AAAAAAGA
1 AAAAAAGA
*
73033234 AAAAAA-T
1 AAAAAAGA
*
73033241 AAAAAA-T
1 AAAAAAGA
*
73033248 AAAAAATA
1 AAAAAAGA
73033256 AAAAAAG-
1 AAAAAAGA
73033263 AAAAAAGA
1 AAAAAAGA
*
73033271 AACAAGAGA
1 AA-AAAAGA
* * *
73033280 GAAGAGGA
1 AAAAAAGA
73033288 AAAAAGAGA
1 AAAAA-AGA
73033297 AAAA
1 AAAA
73033301 TAGAGAGGCC
Statistics
Matches: 86, Mismatches: 15, Indels: 17
0.73 0.13 0.14
Matches are distributed among these distances:
7 22 0.26
8 36 0.42
9 21 0.24
10 7 0.08
ACGTcount: A:0.81, C:0.04, G:0.12, T:0.03
Consensus pattern (8 bp):
AAAAAAGA
Found at i:73033207 original size:16 final size:14
Alignment explanation
Indices: 73033183--73033268 Score: 93
Period size: 15 Copynumber: 5.9 Consensus size: 14
73033173 TTCGAAAATC
73033183 AAAAAAGAAAAAAA
1 AAAAAAGAAAAAAA
73033197 AACAAACAGAAAAAAA
1 AA-AAA-AGAAAAAAA
* * *
73033213 GACAAA-AAAACAA
1 AAAAAAGAAAAAAA
73033226 AAAAAAGAAAAAAA
1 AAAAAAGAAAAAAA
*
73033240 TAAAAAATAAAAAATA
1 -AAAAAAGAAAAAA-A
73033256 AAAAAAGAAAAAA
1 AAAAAAGAAAAAA
73033269 GAAACAAGAG
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
13 10 0.17
14 9 0.15
15 29 0.49
16 11 0.19
ACGTcount: A:0.86, C:0.05, G:0.06, T:0.03
Consensus pattern (14 bp):
AAAAAAGAAAAAAA
Found at i:73034533 original size:206 final size:206
Alignment explanation
Indices: 73034171--73034723 Score: 829
Period size: 206 Copynumber: 2.7 Consensus size: 206
73034161 GATCTGGCTA
*
73034171 AAGCAAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGTCATAGCTGAT
1 AAGC-AGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAATCATAGCTGAT
* *
73034236 TTGGCTTTCATGTGCTTACGATGAAGCAAACCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
65 TTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
* * * * ** *
73034301 ACAGATCAAAGTTTGGCGTTTCCATATTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAG
130 ACAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAA
* *
73034366 ATGTTTATACTG
195 ATGATTAGACTG
* * *
73034378 AAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAATCATAGCTGATT
1 AAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAATCATAGCTGATT
* * * * * * *
73034443 TAGCATTCACGTGCTTATGCTGAAGCAAGTCTAAGTTGATTTGGCATCTCTGTATTGTCAGGGAA
66 TGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
* *
73034508 CAAATTGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAAA
131 CAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAAA
73034573 TGATTAGACTG
196 TGATTAGACTG
* *
73034584 AAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAAAAAATCTAAGA-CATAGCTGAT
1 AAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAA-ATCATAGCTGAT
* *
73034648 TTGGTTTTCGCGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
65 TTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGA
73034713 ACAAATCGAAG
130 ACAAATCGAAG
73034724 AAGCAGATTT
Statistics
Matches: 306, Mismatches: 39, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
206 301 0.98
207 5 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (206 bp):
AAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAATCATAGCTGATT
TGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAA
CAAATCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTAACCTTCAAA
TGATTAGACTG
Found at i:73037926 original size:39 final size:39
Alignment explanation
Indices: 73037871--73038055 Score: 280
Period size: 39 Copynumber: 4.7 Consensus size: 39
73037861 TGTGTGAGAT
*
73037871 TTATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
73037910 TTATATCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
*
73037949 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* * *
73037988 TTATATCCGGGCAAAGTCCTGAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
* *
73038027 TTATATCCGGACTAAGTTCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
73038056 TGGGTTGGAA
Statistics
Matches: 132, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 132 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGATA
Found at i:73039581 original size:26 final size:27
Alignment explanation
Indices: 73039552--73039633 Score: 75
Period size: 26 Copynumber: 3.2 Consensus size: 27
73039542 CCTTTATCCC
*
73039552 TTTTAAAATTATTTATA-ACTTA-TTTA
1 TTTTAAAATTATATATATA-TTATTTTA
*
73039578 TTTT-AAATTGTATATATATTATTTTA
1 TTTTAAAATTATATATATATTATTTTA
* * *
73039604 TTTTAATA-TATATATGTATTA-TATA
1 TTTTAAAATTATATATATATTATTTTA
73039629 TTTTA
1 TTTTA
73039634 TATTATTATT
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
25 21 0.45
26 24 0.51
27 2 0.04
ACGTcount: A:0.37, C:0.01, G:0.02, T:0.60
Consensus pattern (27 bp):
TTTTAAAATTATATATATATTATTTTA
Found at i:73039669 original size:5 final size:5
Alignment explanation
Indices: 73039588--73039669 Score: 55
Period size: 5 Copynumber: 16.4 Consensus size: 5
73039578 TTTTAAATTG
* * * *
73039588 TATA- TATAT TATTT TATTT TA-AT ATATAT ATGTAT TATA- TATTT TATAT
1 TATAT TATAT TATAT TATAT TATAT -TATAT -TATAT TATAT TATAT TATAT
*
73039637 TATTAT T-TACT TATAT TTTAT TATAT TATAT TA
1 TA-TAT TATA-T TATAT TATAT TATAT TATAT TA
73039670 CTTCATATTT
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
4 10 0.16
5 40 0.63
6 13 0.21
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:73039745 original size:65 final size:66
Alignment explanation
Indices: 73039659--73039809 Score: 166
Period size: 65 Copynumber: 2.3 Consensus size: 66
73039649 ATATTTTATT
* * *
73039659 ATATTA-TATTACT-TCATATTTTTCTATTATCATATTAATATATATTTTAAC-ATATATCATTA
1 ATATTATTATTACTATTATATTTTTATATTATCATATTAATATACATTTTAACAATATATCATTA
73039721 C
66 C
* * * * * *
73039722 TTATTATTTATTA-TATTATATTTTTATATTATTATGTTATTTTACATTTTAACAATATATTATT
1 ATATTA-TTATTACTATTATATTTTTATATTATCATATTAATATACATTTTAACAATATATCATT
*
73039786 TC
65 AC
73039788 ATATTATTATTATCTATTATAT
1 ATATTATTATTA-CTATTATAT
73039810 ATATTTTCAG
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
63 5 0.07
64 1 0.01
65 42 0.59
66 15 0.21
67 8 0.11
ACGTcount: A:0.34, C:0.07, G:0.01, T:0.58
Consensus pattern (66 bp):
ATATTATTATTACTATTATATTTTTATATTATCATATTAATATACATTTTAACAATATATCATTA
C
Found at i:73039761 original size:13 final size:13
Alignment explanation
Indices: 73039588--73039753 Score: 55
Period size: 13 Copynumber: 12.6 Consensus size: 13
73039578 TTTTAAATTG
73039588 TATA-TATATTAT
1 TATATTATATTAT
* * *
73039600 TTTATTTTAATA-
1 TATATTATATTAT
*
73039612 TATATATGTATTAT
1 TATAT-TATATTAT
*
73039626 ATATTTTATATTAT
1 -TATATTATATTAT
73039640 TAT-TTACT-TATAT
1 TATATTA-TAT-TAT
*
73039653 TTTATTATATTA-
1 TATATTATATTAT
*
73039665 TATTACTTCATATTTT
1 TA-TA-TT-ATATTAT
*
73039681 TCTATTATCA-TAT
1 TATATTAT-ATTAT
73039694 TA-ATATATATT-T
1 TATAT-TATATTAT
* *
73039706 TA-ACATATATCAT
1 TATA-TTATATTAT
73039719 TACTTATTAT-TTAT
1 TA--TATTATATTAT
*
73039733 TATATTATATTTT
1 TATATTATATTAT
73039746 TATATTAT
1 TATATTAT
73039754 TATGTTATTT
Statistics
Matches: 114, Mismatches: 19, Indels: 41
0.66 0.11 0.24
Matches are distributed among these distances:
12 30 0.26
13 47 0.41
14 21 0.18
15 14 0.12
16 2 0.02
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.60
Consensus pattern (13 bp):
TATATTATATTAT
Found at i:73039924 original size:22 final size:21
Alignment explanation
Indices: 73039888--73039929 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73039878 TTATTTCCTT
*
73039888 TATATTTTTAACAAACCTATG
1 TATATTTTTAACAAAACTATG
*
73039909 TATATTTTTATCCAAAACTAT
1 TATATTTTTA-ACAAAACTAT
73039930 AAAATTAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.45
Consensus pattern (21 bp):
TATATTTTTAACAAAACTATG
Found at i:73040002 original size:21 final size:22
Alignment explanation
Indices: 73039968--73040011 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
73039958 TATTTCAAAA
*
73039968 TTCATTATTAATT-ACTATGTT
1 TTCATTATTAATTAAATATGTT
73039989 TTCATGTATT-ATTAAATATGTT
1 TTCAT-TATTAATTAAATATGTT
73040011 T
1 T
73040012 ATTATTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TTCATTATTAATTAAATATGTT
Found at i:73052299 original size:206 final size:205
Alignment explanation
Indices: 73051939--73052486 Score: 794
Period size: 206 Copynumber: 2.7 Consensus size: 205
73051929 GGCTGAAGAA
* *
73051939 AGATCCAAGATGGTTTGGCATCCTTGTGCTTT-CAAGGAGCAAATTGAAGACATAGCTGATTTGG
1 AGATCCAAGATGGTTTGGCATCCTTGTG-TTTACAAGGAGCAAA-TCAAAACATAGCTGATTTGG
73052003 CTTTCACGTGCTTACG-ATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACA
64 CTTTCACGTGCTTACGCA-GAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACA
* * * * *
73052067 AATCGAAGTTTGGCATCTCTATATTCGACGAAGAGTAGATACATAGCAGATCTAGCCTTTAGATG
128 AATCGAAGTTTGGCATCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCTTCAGATG
* *
73052132 TTTATACTAAAGC
193 ATTAGACTAAAGC
* * *
73052145 AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCAAAATCATAGCTGATTTAGC
1 AGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAGCAAATCAAAA-CATAGCTGATTTGGC
* * * *
73052210 TTTCATGTACTTATGCAGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
65 TTTCACGTGCTTACGCAGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * *
73052275 TCGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTCAGATGAT
130 TCGAAGTTTGGCATCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCTTCAGATGAT
*
73052340 TAGACTGAAGC
195 TAGACTAAAGC
* * *
73052351 AGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCAAAGACATAGCTAATTTGGT
1 AGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAGCAAATCAAA-ACATAGCTGATTTGGC
* * *
73052416 TTTCGCGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAATAAA
65 TTTCACGTGCTTACGCAGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
*
73052481 TTGAAG
130 TCGAAG
73052487 AAGCAGATTT
Statistics
Matches: 304, Mismatches: 34, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
205 7 0.02
206 295 0.97
207 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (205 bp):
AGATCCAAGATGGTTTGGCATCCTTGTGTTTACAAGGAGCAAATCAAAACATAGCTGATTTGGCT
TTCACGTGCTTACGCAGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
CGAAGTTTGGCATCTCCATATTCGACGAAGAGCAGACACATAGCAGATCTAACCTTCAGATGATT
AGACTAAAGC
Found at i:73054113 original size:23 final size:21
Alignment explanation
Indices: 73054087--73054201 Score: 72
Period size: 21 Copynumber: 5.2 Consensus size: 21
73054077 TTATAGCTTA
*
73054087 TTTATTTTAAATTGTATATATAT
1 TTTATTTT--ATTATATATATAT
73054110 TTTATTTTATTATATATATAT
1 TTTATTTTATTATATATATAT
* * * *
73054131 ATTA-TATATTTTATTTACTAT
1 TTTATTTTATTATATATA-TAT
* * *
73054152 TATATTATATTAT-TCATATTT
1 TTTATTTTATTATAT-ATATAT
73054173 TTCTATTATCATATTATATATATAT
1 TT-TATT-T--TATTATATATATAT
73054198 TTTA
1 TTTA
73054202 ACATATATCA
Statistics
Matches: 71, Mismatches: 13, Indels: 15
0.72 0.13 0.15
Matches are distributed among these distances:
20 10 0.14
21 24 0.34
22 13 0.18
23 8 0.11
24 2 0.03
25 13 0.18
26 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (21 bp):
TTTATTTTATTATATATATAT
Found at i:73054136 original size:5 final size:5
Alignment explanation
Indices: 73054101--73054164 Score: 57
Period size: 5 Copynumber: 13.6 Consensus size: 5
73054091 TTTTAAATTG
* * *
73054101 TATA- TATAT TTTAT TTTAT TATA- TATA- TATAT TATA- TATTT TAT-T
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
73054146 TACTAT TATAT TATAT TAT
1 TA-TAT TATAT TATAT TAT
73054165 TCATATTTTT
Statistics
Matches: 52, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
4 18 0.35
5 31 0.60
6 3 0.06
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:73054139 original size:30 final size:30
Alignment explanation
Indices: 73054103--73054201 Score: 102
Period size: 30 Copynumber: 3.4 Consensus size: 30
73054093 TTAAATTGTA
73054103 TATATATTTTATTTTATTATATATATATAT
1 TATATATTTTATTTTATTATATATATATAT
*
73054133 TATATATTTTA-TTTACTAT-TATATTATAT
1 TATATATTTTATTTTATTATATATA-TATAT
*
73054162 TAT-TCATATTT-TTCTATTATCATAT-TATA-
1 TATAT-AT-TTTATTTTATTAT-ATATATATAT
73054191 TATATATTTTA
1 TATATATTTTA
73054202 ACATATATCA
Statistics
Matches: 58, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
28 8 0.14
29 22 0.38
30 25 0.43
32 3 0.05
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (30 bp):
TATATATTTTATTTTATTATATATATATAT
Found at i:73054320 original size:30 final size:27
Alignment explanation
Indices: 73054286--73054358 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 27
73054276 AATTTTAAAA
73054286 ATATATTATTTCATATTATTATTATCTATT
1 ATATA-TATTTCATATTATTATTA--TATT
73054316 ATATATATTTTCAGTA-TATTATTATATT
1 ATATATA-TTTCA-TATTATTATTATATT
73054344 AT-TAT-TTTCATATTA
1 ATATATATTTCATATTA
73054359 AATTGATATT
Statistics
Matches: 40, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
24 2 0.05
25 7 0.17
27 3 0.08
28 6 0.15
29 2 0.05
30 18 0.45
31 2 0.05
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.59
Consensus pattern (27 bp):
ATATATATTTCATATTATTATTATATT
Found at i:73061394 original size:24 final size:23
Alignment explanation
Indices: 73061359--73061403 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
73061349 CATTTCCCCT
73061359 GCTTTAATTCAAGAAAATCTTTAC
1 GCTTTAATTCAA-AAAATCTTTAC
*
73061383 GCTTCTAA-TCAATAAATCTTT
1 GCTT-TAATTCAAAAAATCTTT
73061404 CACTGATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 8 0.42
24 8 0.42
25 3 0.16
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.40
Consensus pattern (23 bp):
GCTTTAATTCAAAAAATCTTTAC
Found at i:73081041 original size:45 final size:45
Alignment explanation
Indices: 73080977--73081150 Score: 215
Period size: 45 Copynumber: 3.8 Consensus size: 45
73080967 TGTAACCCGC
73080977 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
* * *
73081022 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGCAT
* *** * *
73081068 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGCAT
*
73081115 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
73081151 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
45 37 0.34
46 35 0.32
47 36 0.33
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCAT
Found at i:73081143 original size:93 final size:92
Alignment explanation
Indices: 73080985--73081155 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
73080975 GCCCATAAGT
*
73080985 GAACTCGGACTCAACTCAACGAGCTCGGGCTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
73081050 GAGCTCGGATGCCTAGTTACATCTCTC
66 GAGCTCGGATGCCTAGTTACATCTCTC
*
73081077 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC-TTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
73081142 CGAGTTCGGATGCC
65 CGAGCTCGGATGCC
73081156 CAAATATCCG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 28 0.37
93 47 0.63
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTC
Found at i:73083551 original size:15 final size:15
Alignment explanation
Indices: 73083525--73083580 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
73083515 AACAAGAAAC
73083525 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
73083540 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
73083555 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
73083570 GAATAAAGAAA
1 GAATAAAGAAA
73083581 CCCAAGATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 1 0.03
15 35 0.95
16 1 0.03
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:73086653 original size:93 final size:93
Alignment explanation
Indices: 73086541--73086712 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
73086531 GCCCATAAGT
* *
73086541 GAACTCGGACTCAACTCAACGAGATCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73086606 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
73086634 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
73086699 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
73086713 CAAATATCCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:73086708 original size:46 final size:46
Alignment explanation
Indices: 73086533--73086708 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
73086523 TGTAACCCGC
* * *
73086533 CCATAAGTGAACTCGGACTCAACTCAACGAGATCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
73086579 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
73086625 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
73086672 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
73086709 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:73109618 original size:29 final size:28
Alignment explanation
Indices: 73109585--73109657 Score: 110
Period size: 29 Copynumber: 2.6 Consensus size: 28
73109575 TGAATGTGAC
*
73109585 TGGGCCTAACGGGCCATATAAATATGATT
1 TGGGCCTAATGGGCCATATAAATATGA-T
*
73109614 TGGGCCTAATGGGCCATATGAATATGAT
1 TGGGCCTAATGGGCCATATAAATATGAT
*
73109642 TGGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
73109658 GATACAAGTA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 16 0.39
29 25 0.61
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAAATATGAT
Found at i:73109653 original size:28 final size:28
Alignment explanation
Indices: 73109572--73109657 Score: 118
Period size: 28 Copynumber: 3.0 Consensus size: 28
73109562 GTGAGCATGA
* * *
73109572 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATATGATTGGGCCTAATGGGCC
*
73109600 ATATAAATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGA-TTGGGCCTAATGGGCC
*
73109629 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATGAATATGATTGGGCCTAATGGGCC
73109657 A
1 A
73109658 GATACAAGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 26 0.51
29 25 0.49
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATGAATATGATTGGGCCTAATGGGCC
Found at i:73113826 original size:16 final size:16
Alignment explanation
Indices: 73113792--73113826 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
73113782 ATGTATCGGC
*
73113792 AAAAGTCGAAATGCCG
1 AAAAGTCGAAAAGCCG
*
73113808 AAAAGTCGAAAAGCTG
1 AAAAGTCGAAAAGCCG
73113824 AAA
1 AAA
73113827 TGCCAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.23, T:0.11
Consensus pattern (16 bp):
AAAAGTCGAAAAGCCG
Found at i:73114101 original size:29 final size:29
Alignment explanation
Indices: 73114068--73114167 Score: 121
Period size: 29 Copynumber: 3.5 Consensus size: 29
73114058 AATATAACTG
*
73114068 GGCCTAACGGGCCATATAAATGTGATTTA
1 GGCCTAATGGGCCATATAAATGTGATTTA
* * *
73114097 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTA
* * *
73114126 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTA
*
73114154 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
73114168 GCTACAGGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 16 0.26
29 46 0.74
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTA
Found at i:73114138 original size:58 final size:57
Alignment explanation
Indices: 73114066--73114176 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 57
73114056 TGAATATAAC
* *
73114066 TGGGCCTAACGGGCCATATAAATGTGATTTAGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTAGGCCTAATGGGCCAGATACAGGTGATT
* * * * *
73114124 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAGCTACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAGGT
73114177 ATGTGAAATT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAGGTGATT
Found at i:73115220 original size:21 final size:22
Alignment explanation
Indices: 73115182--73115229 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
73115172 ATAACTGAAA
**
73115182 GGTTTCTTTTTAAGTTAATTAG
1 GGTTTCTTTTTAAGTTAAGAAG
**
73115204 GGTTTC-TTTTATTTTAAGAAG
1 GGTTTCTTTTTAAGTTAAGAAG
73115225 GGTTT
1 GGTTT
73115230 TCAATGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.21, C:0.04, G:0.21, T:0.54
Consensus pattern (22 bp):
GGTTTCTTTTTAAGTTAAGAAG
Found at i:73119371 original size:93 final size:93
Alignment explanation
Indices: 73119263--73119433 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
73119253 GCCCCTAAGT
* *
73119263 GAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
73119327 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
73119356 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATATGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73119421 CGAGTTCGGATGC
66 CGAGTTCGGATGC
73119434 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:73119430 original size:46 final size:46
Alignment explanation
Indices: 73119261--73119430 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
73119251 CCGCCCCTAA
* * * *
73119261 GTGAACTCGAACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAA
1 GTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAT
* * *
73119307 GTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACATTT
1 GTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCATAT
**
73119353 CACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAT
1 -GTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAT
73119400 GTGAACTCGGACTCAACTCAACGAGTTCGGA
1 GTGAACTCGGACTCAACTCAACGAGTTCGGA
73119431 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 59 0.57
47 33 0.32
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (46 bp):
GTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAT
Found at i:73122510 original size:34 final size:35
Alignment explanation
Indices: 73122439--73122510 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
73122429 CGTATCCTAG
* *
73122439 CTACAGTCTCAGTCTTCTAAAGTTTTTAGTTTTCC
1 CTACAGTCTCAGTCTTCTAAAGTTTTCAGTTTACC
* *
73122474 CTACTGTCTCAGT-TTCTACAG-TTTCAGTATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTTCAGT-TTACC
73122508 CTA
1 CTA
73122511 ACTACAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 6 0.19
34 14 0.44
35 12 0.38
ACGTcount: A:0.21, C:0.25, G:0.11, T:0.43
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTTCAGTTTACC
Found at i:73124024 original size:65 final size:65
Alignment explanation
Indices: 73123916--73124046 Score: 217
Period size: 65 Copynumber: 2.0 Consensus size: 65
73123906 AGTCCCATGC
* * * *
73123916 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATCGCATGCAGCAAATAGCAACAGTCAAACATGCATTCAGATCAACCTT
*
73123981 ATCAGATAATAATAACATCGCATGCAGCAAATAGCAACTGTCAAACATGCATTCAGATCAACCTT
1 ATCAGATAATAATAACATCGCATGCAGCAAATAGCAACAGTCAAACATGCATTCAGATCAACCTT
73124046 A
1 A
73124047 ACCCTAGGGT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.24
Consensus pattern (65 bp):
ATCAGATAATAATAACATCGCATGCAGCAAATAGCAACAGTCAAACATGCATTCAGATCAACCTT
Found at i:73125361 original size:20 final size:21
Alignment explanation
Indices: 73125338--73125378 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
73125328 TTTGGCTAGG
73125338 AGAAAAAGGA-AAAAAAAGAA
1 AGAAAAAGGAGAAAAAAAGAA
*
73125358 AGAAAATGGAGGAAAAAAAGA
1 AGAAAAAGGA-GAAAAAAAGA
73125379 GGAAGAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.02
Consensus pattern (21 bp):
AGAAAAAGGAGAAAAAAAGAA
Found at i:73126708 original size:34 final size:35
Alignment explanation
Indices: 73126655--73126721 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 35
73126645 CCTAGATACA
*
73126655 GTCTCAATCTTCTAAAGTTTTCAGT-TTTCCCTACT
1 GTCTCAATCTTCTAAAG-TTTCAGTATTACCCTACT
* *
73126690 GTCTCAGT-TTCTACAGTTTCAGTATTACCCTA
1 GTCTCAATCTTCTAAAGTTTCAGTATTACCCTA
73126722 ACTACAGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 7 0.25
34 14 0.50
35 7 0.25
ACGTcount: A:0.21, C:0.25, G:0.10, T:0.43
Consensus pattern (35 bp):
GTCTCAATCTTCTAAAGTTTCAGTATTACCCTACT
Found at i:73129454 original size:13 final size:14
Alignment explanation
Indices: 73129436--73129471 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
73129426 GGGTCTAGAA
73129436 GAAAAAGAAAA-AG
1 GAAAAAGAAAAGAG
73129449 GAAAAAGAAAATGAG
1 GAAAAAGAAAA-GAG
73129464 GAAAAAGA
1 GAAAAAGA
73129472 GAGGAAGAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 11 0.52
15 10 0.48
ACGTcount: A:0.72, C:0.00, G:0.25, T:0.03
Consensus pattern (14 bp):
GAAAAAGAAAAGAG
Found at i:73131557 original size:65 final size:65
Alignment explanation
Indices: 73131447--73131574 Score: 222
Period size: 65 Copynumber: 2.0 Consensus size: 65
73131437 CCCATGCATC
*
73131447 AGATAATAATAACATGGCATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTTATT
1 AGATAATAATAACATGACATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTTATT
*
73131512 AGATAATAATAACATGACATGTAGTAAATAGTAATAGTC-ATACATGCATTCAGGTCAACCTTA
1 AGATAATAATAACATGACATGTAGTAAATAGTAACAGTCGA-ACATGCATTCAGGTCAACCTTA
73131575 ACCCTAGGGG
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
64 1 0.02
65 59 0.98
ACGTcount: A:0.41, C:0.15, G:0.16, T:0.28
Consensus pattern (65 bp):
AGATAATAATAACATGACATGTAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTTATT
Found at i:73135604 original size:18 final size:18
Alignment explanation
Indices: 73135574--73135609 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
73135564 ATTTCATACG
73135574 TTGGCCCATTTTCTTCGTT
1 TTGGCCCATTTTC-TCGTT
73135593 TTGGCCCA-TTTCTCGTT
1 TTGGCCCATTTTCTCGTT
73135610 CCTTTCGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 4 0.24
19 8 0.47
ACGTcount: A:0.06, C:0.28, G:0.17, T:0.50
Consensus pattern (18 bp):
TTGGCCCATTTTCTCGTT
Found at i:73140258 original size:29 final size:29
Alignment explanation
Indices: 73140225--73140282 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
73140215 ATCTCTAGGC
73140225 GCGCAATCAACTCCACTTAATTATGACAA
1 GCGCAATCAACTCCACTTAATTATGACAA
73140254 GCGCAATCAACTCCACTTAATTATGACAA
1 GCGCAATCAACTCCACTTAATTATGACAA
73140283 ATTTACTCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.24
Consensus pattern (29 bp):
GCGCAATCAACTCCACTTAATTATGACAA
Found at i:73164165 original size:66 final size:66
Alignment explanation
Indices: 73164082--73164211 Score: 197
Period size: 66 Copynumber: 2.0 Consensus size: 66
73164072 CTTGTAAGGT
* * * *
73164082 CGAAGAGTTGAATAAAGAGAAGAGAAAACCTGATTGTGAAGCTAGAAATTTGAGGGAAAGACTGG
1 CGAAGAGTTCAATAAAGAGAAAAGAAAACCTGATTGTGAAGCTAGAAATTCGAGGAAAAGACTGG
73164147 C
66 C
** *
73164148 CGAAGAGTTCAATAAAGAGAAAAGAAAAGTTGATTGTGAAGCTAGAGATTCGAGGAAAAGACTG
1 CGAAGAGTTCAATAAAGAGAAAAGAAAACCTGATTGTGAAGCTAGAAATTCGAGGAAAAGACTG
73164212 ATGAGTAAGT
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.44, C:0.08, G:0.29, T:0.18
Consensus pattern (66 bp):
CGAAGAGTTCAATAAAGAGAAAAGAAAACCTGATTGTGAAGCTAGAAATTCGAGGAAAAGACTGG
C
Found at i:73167720 original size:37 final size:37
Alignment explanation
Indices: 73167679--73167759 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
73167669 TGAAGTTATT
*
73167679 GGGTCTTACCCGGACAAAATCCCCACACGTAGTCATC
1 GGGTCTTACCCGGACAAAATCCCCACACGTAATCATC
* *
73167716 GGGTCTTACCCGGACATAATCTCCACACGTAATCATC
1 GGGTCTTACCCGGACAAAATCCCCACACGTAATCATC
73167753 GGGTCTT
1 GGGTCTT
73167760 TAGAGCTCGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
GGGTCTTACCCGGACAAAATCCCCACACGTAATCATC
Found at i:73167965 original size:47 final size:47
Alignment explanation
Indices: 73167878--73168901 Score: 1679
Period size: 47 Copynumber: 21.6 Consensus size: 47
73167868 CCCTTCGGGA
* * * * * *
73167878 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73167925 CCTGTCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73167972 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73168019 CTTATCACATATATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73168066 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73168115 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73168162 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73168209 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73168258 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73168305 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73168354 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73168401 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73168448 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73168495 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73168542 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73168589 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73168636 CTTATCACATATACACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73168683 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73168732 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73168779 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73168826 CTTATCACATATATACAATTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73168873 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
73168902 TATTCAAATA
Statistics
Matches: 920, Mismatches: 47, Indels: 18
0.93 0.05 0.02
Matches are distributed among these distances:
47 724 0.79
49 196 0.21
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73168105 original size:143 final size:141
Alignment explanation
Indices: 73167878--73168901 Score: 1679
Period size: 143 Copynumber: 7.2 Consensus size: 141
73167868 CCCTTCGGGA
* * * * * * * * *
73167878 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCGCATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73167943 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
73168008 GGCCATTAGGC
131 GGCCATTAGGC
* *
73168019 CTTATCACATATATGCACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
73168084 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
73168149 TCGGCTATTAGGC
129 TCGGCCATTAGGC
*
73168162 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* * *
73168227 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAATTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
73168292 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
73168305 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
73168370 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
73168435 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
73168448 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
73168513 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
73168578 GGCCATTCGGC
131 GGCCATTAGGC
* * * *
73168589 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATACACAA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
73168654 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
73168719 TCGGCTATTAGGC
129 TCGGCCATTAGGC
73168732 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
73168797 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAATTTCACATTCATCACATT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
73168862 GGCCATTAGGC
131 GGCCATTAGGC
73168873 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
73168902 TATTCAAATA
Statistics
Matches: 825, Mismatches: 50, Indels: 14
0.93 0.06 0.02
Matches are distributed among these distances:
141 312 0.38
143 469 0.57
145 44 0.05
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:73178656 original size:43 final size:43
Alignment explanation
Indices: 73178601--73178684 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
73178591 ATATCGTACA
*
73178601 ATGCCAACGTCCCAAAC-GTGGTCTTACAT-GTAACCACATATCG
1 ATGCCAACGTCCCAAACAG-GGTCTTAC-TCGTAAACACATATCG
*
73178644 ATGCC-ACTGTCCCAGACAGGGTCTTACTCGTAAACACATAT
1 ATGCCAAC-GTCCCAAACAGGGTCTTACTCGTAAACACATAT
73178685 TGGAATCACA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
42 3 0.08
43 32 0.89
44 1 0.03
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAAACAGGGTCTTACTCGTAAACACATATCG
Found at i:73179475 original size:13 final size:13
Alignment explanation
Indices: 73179457--73179482 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
73179447 TCTCAAAAAC
73179457 GTAGAAATTATCA
1 GTAGAAATTATCA
73179470 GTAGAAATTATCA
1 GTAGAAATTATCA
73179483 AAAACCAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
GTAGAAATTATCA
Found at i:73180771 original size:46 final size:47
Alignment explanation
Indices: 73180582--73180802 Score: 179
Period size: 46 Copynumber: 4.7 Consensus size: 47
73180572 GTAAGGTGCC
* * * *
73180582 GATGCCATGTCCCAAACAT-TCTTACACTAGCTCTCGCATATTC-ATGCT
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTCT-ACAT-CTCAAGGCT
* * *
73180630 GATGCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTACATCTC-AAGGCT
* * *
73180676 GATGCTTGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGGCT
* * * *
73180722 GATGCATGTCCTAGACATGTCTTACACTAGCTCT-CGTCTCAATGTT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGGCT
*
73180768 GATGCCATGTCCCAGACATGGTGTTACACTAGCTC
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTC
73180803 ACACAAGTGA
Statistics
Matches: 144, Mismatches: 18, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
44 10 0.07
45 17 0.12
46 59 0.41
47 15 0.10
48 33 0.23
49 1 0.01
50 9 0.06
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAAGGCT
Found at i:73186915 original size:20 final size:21
Alignment explanation
Indices: 73186890--73186928 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73186880 CTTTTGAAAC
73186890 AGGGT-ACAAGCCCGTGTGAA
1 AGGGTAACAAGCCCGTGTGAA
*
73186910 AGGGTAACATGCCCGTGTG
1 AGGGTAACAAGCCCGTGTG
73186929 GCTCTTTCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.26, C:0.21, G:0.36, T:0.18
Consensus pattern (21 bp):
AGGGTAACAAGCCCGTGTGAA
Found at i:73189270 original size:39 final size:39
Alignment explanation
Indices: 73189226--73189501 Score: 426
Period size: 39 Copynumber: 7.1 Consensus size: 39
73189216 ATGCAAGACA
73189226 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
73189265 CTGGAAATATATCCGAGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
73189304 ATGGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
73189343 CTGGAAATATATCTGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
73189382 CTGGAAATGTATCCGGGCTAAAGTCCTGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
**
73189421 CTGGAAATGTATCCGGGCCCAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
73189460 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
73189499 CTG
1 CTG
73189502 ATAATATAAT
Statistics
Matches: 211, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 211 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:73192044 original size:46 final size:46
Alignment explanation
Indices: 73191910--73192179 Score: 212
Period size: 46 Copynumber: 5.7 Consensus size: 46
73191900 GGTAAGGTGT
* * ** *
73191910 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTATATCCATGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTC--ATCTGTAGGC
* * *
73191960 CGATGCCATGTCCCAGACATGGTCTTACA-TTG-ACACATCATGTA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATC-TGTAGGC
*
73192006 CGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCG-AGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCT-GTAGGC
* * *
73192052 CGATGCATGTCCCAGACATGTTTTACACTAGCTCTCGTCT-TAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTGT-AGGC
*** * * *
73192098 ATTTGCCATGTCCCAGACATGATGTTACACTAGCTCTCATAAT-TTGGC
1 CGATG-CATGTCCCAGACATG-TCTTACACTAGCTCTCAT-CTGTAGGC
73192146 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTC
73192180 ACACAAGTGA
Statistics
Matches: 182, Mismatches: 26, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
44 8 0.04
45 18 0.10
46 69 0.38
47 33 0.18
48 22 0.12
49 4 0.02
50 28 0.15
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTGTAGGC
Found at i:73192169 original size:140 final size:142
Alignment explanation
Indices: 73191910--73192174 Score: 349
Period size: 140 Copynumber: 1.9 Consensus size: 142
73191900 GGTAAGGTGT
* * *
73191910 CGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTATATCCATGCCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCAATGCAGATGCCATGTCCCA
* * *
73191975 GACATGGTCTTACATTGACACATCATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
66 GACATGATCTTACATAGACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
73192040 ACATCTCGAGGC
131 ACATCTCGAGGC
* * **
73192052 CGATG-CATGTCCCAGACAT-GTTTTACACTAGCTCTCGTCT-T-AATGCATTTGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCAATGCAGATGCCATGTCCCA
* * * * *
73192113 GACATGATGTTACACTAGCTCTCATAATTTGGCCGATGCATGTCCCAGACATGTCTTACACT
66 GACATGATCTTACA-TAG-ACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
73192175 AGCTCACACA
Statistics
Matches: 106, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
138 28 0.26
139 3 0.03
140 57 0.54
141 13 0.12
142 5 0.05
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (142 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTATATCAATGCAGATGCCATGTCCCA
GACATGATCTTACATAGACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTT
ACATCTCGAGGC
Found at i:73192632 original size:25 final size:26
Alignment explanation
Indices: 73192599--73192653 Score: 103
Period size: 25 Copynumber: 2.2 Consensus size: 26
73192589 TTATCGAATT
73192599 TCTTCGTATTTCAAGCCTAGAAGAAC
1 TCTTCGTATTTCAAGCCTAGAAGAAC
73192625 TCTT-GTATTTCAAGCCTAGAAGAAC
1 TCTTCGTATTTCAAGCCTAGAAGAAC
73192650 TCTT
1 TCTT
73192654 TTTACTCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 25 0.86
26 4 0.14
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.35
Consensus pattern (26 bp):
TCTTCGTATTTCAAGCCTAGAAGAAC
Found at i:73197734 original size:24 final size:24
Alignment explanation
Indices: 73197695--73197800 Score: 149
Period size: 24 Copynumber: 4.4 Consensus size: 24
73197685 GCCGGCCAAC
*
73197695 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
73197720 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
* *
73197744 TCCTCTCCCTTATTAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
73197768 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
73197792 TCTTCTCCT
1 TCCTCTCCT
73197801 GACAGCCTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
24 70 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.38, G:0.06, T:0.38
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:73203875 original size:40 final size:40
Alignment explanation
Indices: 73203830--73204021 Score: 296
Period size: 40 Copynumber: 4.8 Consensus size: 40
73203820 ATAACCACAA
* * * *
73203830 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
73203870 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
73203910 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
73203950 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
73203990 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
73204022 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:73218269 original size:43 final size:43
Alignment explanation
Indices: 73218123--73218334 Score: 207
Period size: 43 Copynumber: 5.0 Consensus size: 43
73218113 AGTCTCGTAT
* * * * * **
73218123 ATCACATA-CAATGCC-ATATCCTAGATATGGTCTTACATGTT
1 ATCACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA
* * ** *
73218164 ATCACATATCGATGCCAATAGACTC-GTTATGGTCTTATACG-A
1 ATCACATATCGATGCCAAT-GTCCCAGACATGGTCTTACACGAA
* *
73218206 CTCATATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA
1 ATCACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA
* * * *
73218249 ATCACATAACGGTGCCAATGTCCCAAACATGGTCTTACACGTA
1 ATCACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA
* *
73218292 ATCACTTATCGATGCCAATGTCCTAGACATGGTCTTACACGAA
1 ATCACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA
73218335 TCATGTATTG
Statistics
Matches: 138, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
41 11 0.08
42 36 0.26
43 90 0.65
44 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATCACATATCGATGCCAATGTCCCAGACATGGTCTTACACGAA
Found at i:73220215 original size:49 final size:50
Alignment explanation
Indices: 73220084--73220230 Score: 161
Period size: 49 Copynumber: 2.9 Consensus size: 50
73220074 ATCTATTATG
* * *
73220084 AGGTCGCATGTGTAGTACTAAATGCAGGCTACAATGCGTACTCGAAAACTGTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-C--AGACTGTA
* * * * * *
73220137 ACGTCACGTGTATAGTACTAAGTGTAGGCTACTATGTGTACCAGACTGT-
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGTA
* *
73220186 TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGGGTACCAGA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
73220231 TAGCTTCGGC
Statistics
Matches: 78, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
49 38 0.49
50 6 0.08
52 1 0.01
53 33 0.42
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (50 bp):
AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGTA
Found at i:73234659 original size:43 final size:43
Alignment explanation
Indices: 73234560--73234672 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 43
73234550 GATTTAGATG
* * * * * * *
73234560 TAAGACCATGCCTGGGACAATGGCA-TCATATTTGATTTCGTG
1 TAAGACCACGTCTGGGACAGTGGCATTGATATTTGATTACATA
* *
73234602 TAAGGCC-CTTTCTGGGACAGTGGCATTGATATTTGATTACATA
1 TAAGACCAC-GTCTGGGACAGTGGCATTGATATTTGATTACATA
73234645 TAAGACCACGTCTGGGAC-GTTGGCATTG
1 TAAGACCACGTCTGGGACAG-TGGCATTG
73234673 TACAAGCTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
42 20 0.36
43 35 0.62
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
TAAGACCACGTCTGGGACAGTGGCATTGATATTTGATTACATA
Found at i:73235398 original size:16 final size:16
Alignment explanation
Indices: 73235377--73235408 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
73235367 GTAGTAATTT
73235377 GAGGTTATGAAACATA
1 GAGGTTATGAAACATA
73235393 GAGGTTATGAAACATA
1 GAGGTTATGAAACATA
73235409 TGTTTTGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (16 bp):
GAGGTTATGAAACATA
Found at i:73246749 original size:19 final size:19
Alignment explanation
Indices: 73246725--73246764 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
73246715 TTAGCCGTAC
73246725 TTGGATCGGTTCGTAGTCA
1 TTGGATCGGTTCGTAGTCA
73246744 TTGGATCGGTTCGTAGTCA
1 TTGGATCGGTTCGTAGTCA
73246763 TT
1 TT
73246765 CTTATCAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.30, T:0.40
Consensus pattern (19 bp):
TTGGATCGGTTCGTAGTCA
Found at i:73250943 original size:20 final size:21
Alignment explanation
Indices: 73250904--73250951 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
73250894 ATTTTGATAT
*
73250904 ACATGATTTGATATGATATGC
1 ACATGATATGATATGATATGC
*
73250925 ACATGATATG-TATGTTATGC
1 ACATGATATGATATGATATGC
73250945 ACATGAT
1 ACATGAT
73250952 GTATTCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
ACATGATATGATATGATATGC
Found at i:73252996 original size:29 final size:29
Alignment explanation
Indices: 73252961--73253034 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
73252951 GTTGTGAGAT
* *
73252961 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
73252990 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
73253019 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73253035 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:73260453 original size:15 final size:15
Alignment explanation
Indices: 73260433--73260462 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
73260423 ATTATGAAAG
73260433 ATATGTTTTGGATTA
1 ATATGTTTTGGATTA
*
73260448 ATATGTTTTGTATTA
1 ATATGTTTTGGATTA
73260463 GAATTTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.17, T:0.57
Consensus pattern (15 bp):
ATATGTTTTGGATTA
Found at i:73261106 original size:43 final size:43
Alignment explanation
Indices: 73261059--73261196 Score: 145
Period size: 43 Copynumber: 3.3 Consensus size: 43
73261049 CCACGTACAA
* * *
73261059 GACATTGGCATTGATATGTGATTATGTGTAAGACCATGTCTGG
1 GACATTGGCATCGATATATGATTACGTGTAAGACCATGTCTGG
* * * *
73261102 GACATCGGCATCG-TATTTGATT-CGTGTAAGACCCTGTGTGG
1 GACATTGGCATCGATATATGATTACGTGTAAGACCATGTCTGG
* * * * *
73261143 GACAATGGCATCGAGATATGATTACATGTAAGACAACGTCTGG
1 GACATTGGCATCGATATATGATTACGTGTAAGACCATGTCTGG
*
73261186 GACGTTGGCAT
1 GACATTGGCAT
73261197 TGTACGATAT
Statistics
Matches: 76, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
41 27 0.36
42 15 0.20
43 34 0.45
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (43 bp):
GACATTGGCATCGATATATGATTACGTGTAAGACCATGTCTGG
Found at i:73264274 original size:40 final size:40
Alignment explanation
Indices: 73264227--73264319 Score: 102
Period size: 40 Copynumber: 2.3 Consensus size: 40
73264217 ATTTTAGGGA
*
73264227 AAATCCTATTCACCTTGAGT-T-ACCATAGTGAATTAGGAAC
1 AAATCCTATTCACCTTGA-TATAAAC-TAGTGAATTAGGAAC
* * *
73264267 AAATCCTATCCA-CTTTATATAAATCTAGTGAATTAGGAAT
1 AAATCCTATTCACCTTGATATAAA-CTAGTGAATTAGGAAC
73264307 AAATCCTATTCAC
1 AAATCCTATTCAC
73264320 TTTTAATTCT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
38 1 0.02
39 5 0.11
40 37 0.84
41 1 0.02
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (40 bp):
AAATCCTATTCACCTTGATATAAACTAGTGAATTAGGAAC
Found at i:73271195 original size:47 final size:47
Alignment explanation
Indices: 73271141--73271308 Score: 336
Period size: 47 Copynumber: 3.6 Consensus size: 47
73271131 TATTTGAATA
73271141 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73271188 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73271235 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
73271282 AATGTGAAAGTGTATATATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
73271309 TCCCGAAGGG
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 121 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:73272990 original size:40 final size:40
Alignment explanation
Indices: 73272707--73272978 Score: 400
Period size: 40 Copynumber: 6.8 Consensus size: 40
73272697 GAGAATTGAG
*
73272707 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
73272747 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
73272787 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
73272827 AGTAATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
73272867 GGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * **
73272907 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
73272947 GGTGTTATATTCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
73272979 ATCATGCTGG
Statistics
Matches: 210, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 210 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:73277059 original size:47 final size:47
Alignment explanation
Indices: 73277003--73277264 Score: 425
Period size: 47 Copynumber: 5.6 Consensus size: 47
73276993 TATTTGAATA
*
73277003 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
73277050 ATTGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
73277097 AATGTGAAGGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
73277144 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * *
73277191 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
73277238 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
73277265 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 201 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:73285729 original size:47 final size:47
Alignment explanation
Indices: 73285678--73285996 Score: 487
Period size: 47 Copynumber: 6.7 Consensus size: 47
73285668 TTAGGATTCT
* * *
73285678 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
73285725 ATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
*
73285774 ATGTGATGAATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73285821 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
73285868 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
73285915 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
73285962 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73285997 TCCCGAAGGG
Statistics
Matches: 252, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
46 1 0.00
47 206 0.82
49 45 0.18
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:73286168 original size:37 final size:37
Alignment explanation
Indices: 73286118--73286229 Score: 181
Period size: 37 Copynumber: 3.1 Consensus size: 37
73286108 AGCTCTAAAT
73286118 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
73286155 ACCCGATGACTACGTGT-GGGATTTTGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
* * * *
73286191 ACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
73286228 AC
1 AC
73286230 TTCGTAATAA
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 34 0.49
37 36 0.51
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (37 bp):
ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
Found at i:73286183 original size:36 final size:36
Alignment explanation
Indices: 73286118--73286229 Score: 179
Period size: 36 Copynumber: 3.1 Consensus size: 36
73286108 AGCTCTAAAT
73286118 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
1 ACCCGATGACTACGTGT-GGGATTTTGTCCGGGTAAG
73286155 ACCCGATGACTACGTGTGGGATTTTGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGGATTTTGTCCGGGTAAG
* * *
73286191 ACCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATGACTACGTGTGG-GATTTTGTCCGGGTAAG
73286228 AC
1 AC
73286230 TTCGTAATAA
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
36 36 0.51
37 35 0.49
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (36 bp):
ACCCGATGACTACGTGTGGGATTTTGTCCGGGTAAG
Found at i:73288129 original size:40 final size:40
Alignment explanation
Indices: 73287928--73288115 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
73287918 TATTCGGATG
* *
73287928 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73287968 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73288007 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
73288047 ATAACCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
73288087 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
73288116 AGCAAGTAGC
Statistics
Matches: 140, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
39 35 0.25
40 105 0.75
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:73288129 original size:80 final size:80
Alignment explanation
Indices: 73287928--73288148 Score: 317
Period size: 80 Copynumber: 2.8 Consensus size: 80
73287918 TATTCGGATG
*
73287928 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TCCGGGCTAAGTCCCGAAGG
*
73287990 CATTTGTGCGAGTTACT
64 CATTTGTACGAGTTACT
* *
73288007 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAGTCCCGAAGGC
73288071 ATTTGTACGAGTTACT
65 ATTTGTACGAGTTACT
* * *
73288087 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGG
73288149 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
79 63 0.49
80 66 0.51
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTACGAGTTACT
Found at i:73290898 original size:40 final size:40
Alignment explanation
Indices: 73290850--73291034 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
73290840 CTTGCACAAG
*
73290850 GCCTTCGGGTCTTAGCCCGGATATAGTCACCAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACCAGCACAAAT
* *
73290890 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACCAGCACAAAT
* *
73290930 GCCTTCTGGTCTTAGCCCGGATATAG-CAACTC-GCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-AC-CAGCACAAAT
* * *
73290970 GCCTTCGGATCTTAGTCC-GATTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGA-TATAGTCACC-AGCACAAAT
*
73291011 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
73291035 CATTCGAATA
Statistics
Matches: 123, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
39 4 0.03
40 92 0.75
41 25 0.20
42 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACCAGCACAAAT
Found at i:73290945 original size:80 final size:79
Alignment explanation
Indices: 73290814--73291034 Score: 247
Period size: 80 Copynumber: 2.8 Consensus size: 79
73290804 CTCAAGTAAT
* * * *
73290814 CTTCGGGATTTAGCCGGATATA-ACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCGGATATAGTC-ACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-
*
73290877 C-AC-CAGCATAAATGC
64 CAACTC-GCACAAATGC
* *
73290892 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCTGGTCTTAGCCCGGATATAGC
1 CTTCGGGACTTAG-CCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
*
73290957 AACTCGCACGAATGC
65 AACTCGCACAAATGC
*
73290972 CTTC-GGATCTTAGTCC-GATTATAGTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCGGA-TATAGTCA-CTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
73291035 CATTCGAATA
Statistics
Matches: 124, Mismatches: 11, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
78 12 0.10
79 22 0.18
80 57 0.46
81 33 0.27
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAGTCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTCGCACAAATGC
Found at i:73294359 original size:40 final size:40
Alignment explanation
Indices: 73294305--73294489 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
73294295 CTTGAACAAG
* * *
73294305 GCCTTCGAGTCTTAGCCCGGATATAGTCACCAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACCAGCACAAAT
* *
73294345 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACCAGCACAAAT
* * *
73294385 GCCTTCAGGTCTTAGCCCGGATATAG-CAACTC-GCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTC-AC-CAGCACAAAT
* * *
73294425 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCACC-AGCACAAAT
73294466 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
73294490 CATTCGAATA
Statistics
Matches: 121, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
39 4 0.03
40 89 0.74
41 25 0.21
42 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACCAGCACAAAT
Found at i:73302960 original size:43 final size:42
Alignment explanation
Indices: 73302885--73302992 Score: 171
Period size: 43 Copynumber: 2.5 Consensus size: 42
73302875 TAAGATTACG
*
73302885 TGTAGGACCATATCTGGGATATGGCATCGATACGAGACTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATACGAGACTTCA
* * *
73302927 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATACGAGACTTCA
73302970 TGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
73302993 ACATTGGTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 20 0.34
43 39 0.66
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATACGAGACTTCA
Found at i:73304466 original size:20 final size:20
Alignment explanation
Indices: 73304432--73304485 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
73304422 CACGGCCTGC
* *
73304432 CCACATGGGCATGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
*
73304452 CCACACGGGTGTGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
73304472 CCACACGGGCGTGT
1 CCACACGGGCGTGT
73304486 GACCCTTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.20, C:0.35, G:0.30, T:0.15
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAG
Found at i:73305885 original size:16 final size:16
Alignment explanation
Indices: 73305864--73305934 Score: 76
Period size: 16 Copynumber: 4.6 Consensus size: 16
73305854 GTGTAACTCC
73305864 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
73305880 CCAAAAATCTCGAAAT
1 CCAAAAATCCCGAAAT
**
73305896 CCAAAAA---AAAAAT
1 CCAAAAATCCCGAAAT
**
73305909 CCCGAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
73305925 CCAAAAATCC
1 CCAAAAATCC
73305935 AAAAATCTTG
Statistics
Matches: 43, Mismatches: 9, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
13 9 0.21
16 34 0.79
ACGTcount: A:0.52, C:0.30, G:0.06, T:0.13
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:73305925 original size:37 final size:37
Alignment explanation
Indices: 73305866--73305939 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
73305856 GTAACTCCCC
*
73305866 AAAAATCCCGAAATCCAAAAATCTC-GAAATCCAAAAA
1 AAAAATCCCGAAATCCAAAAATC-CAAAAATCCAAAAA
**
73305903 AAAAATCCCGAAATCCCGAAATCCAAAAATCCAAAAA
1 AAAAATCCCGAAATCCAAAAATCCAAAAATCCAAAAA
73305940 TCTTGAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 1 0.03
37 32 0.97
ACGTcount: A:0.57, C:0.26, G:0.05, T:0.12
Consensus pattern (37 bp):
AAAAATCCCGAAATCCAAAAATCCAAAAATCCAAAAA
Found at i:73305932 original size:8 final size:8
Alignment explanation
Indices: 73305864--73305941 Score: 56
Period size: 8 Copynumber: 10.1 Consensus size: 8
73305854 GTGTAACTCC
73305864 CCAAAAAT
1 CCAAAAAT
**
73305872 CCCGAAAT
1 CCAAAAAT
73305880 CCAAAAAT
1 CCAAAAAT
*
73305888 CTC-GAAAT
1 C-CAAAAAT
73305896 CCAAAAA-
1 CCAAAAAT
73305903 --AAAAAT
1 CCAAAAAT
**
73305909 CCCGAAAT
1 CCAAAAAT
**
73305917 CCCGAAAT
1 CCAAAAAT
73305925 CCAAAAAT
1 CCAAAAAT
73305933 CCAAAAAT
1 CCAAAAAT
73305941 C
1 C
73305942 TTGAATTTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 10
0.73 0.13 0.13
Matches are distributed among these distances:
5 5 0.09
7 1 0.02
8 48 0.87
9 1 0.02
ACGTcount: A:0.54, C:0.28, G:0.05, T:0.13
Consensus pattern (8 bp):
CCAAAAAT
Found at i:73307464 original size:29 final size:29
Alignment explanation
Indices: 73307426--73307527 Score: 120
Period size: 29 Copynumber: 3.6 Consensus size: 29
73307416 TGCATGTGAC
*
73307426 TGGGCCTAATGGGCCATATAAATGTGATT
1 TGGGCCTAATAGGCCATATAAATGTGATT
73307455 TGGGCCTAATAGGCCATATACAA-GTGATT
1 TGGGCCTAATAGGCCATATA-AATGTGATT
* *
73307484 TGGGCCTAATAGGCTC-TATGAATATGA-T
1 TGGGCCTAATAGGC-CATATAAATGTGATT
* *
73307512 TGGGCTTAATGGGCCA
1 TGGGCCTAATAGGCCA
73307528 GATACAGGTA
Statistics
Matches: 64, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
27 1 0.02
28 15 0.23
29 45 0.70
30 3 0.05
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (29 bp):
TGGGCCTAATAGGCCATATAAATGTGATT
Done.