Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 217 of 345
Found at i:73614043 original size:54 final size:54
Alignment explanation
Indices: 73613874--73614045 Score: 145
Period size: 54 Copynumber: 3.2 Consensus size: 54
73613864 ATACTTTAGT
* * * * **
73613874 TTACCAAATTACTAAAATACCC-CCAGTTGTAAAATTACCAAAGTACCAC-CGGT
1 TTACAAAATTACTAAAATACCCTCAACTTGTAAAATTATCAAAGTACC-CTCGAA
* ** * * * *
73613927 TTATAAAATTACCCAAATATCCTCGATTTGTAAAATTATCGAAA-TACCCT-TAA
1 TTACAAAATTACTAAAATACCCTCAACTTGTAAAATTATC-AAAGTACCCTCGAA
** *
73613980 TTTGTAAAATTACTGAAATACCCTCAACTTGTAAAATTATCAAAGTACCCTCGAA
1 -TTACAAAATTACTAAAATACCCTCAACTTGTAAAATTATCAAAGTACCCTCGAA
73614035 TTACAAAATTA
1 TTACAAAATTA
73614046 ATGTTTTACC
Statistics
Matches: 93, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
53 21 0.23
54 67 0.72
55 5 0.05
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
TTACAAAATTACTAAAATACCCTCAACTTGTAAAATTATCAAAGTACCCTCGAA
Found at i:73614055 original size:27 final size:27
Alignment explanation
Indices: 73614025--73614513 Score: 530
Period size: 27 Copynumber: 18.2 Consensus size: 27
73614015 ATTATCAAAG
* * *
73614025 TACCCTCGAATTACAAAATTAATGTTT
1 TACCCTCGAATTACAGAATTACTATTT
*
73614052 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGAATTACAGAATTACTATTT
* *
73614079 TACCCTC-AATTACAAAATTACTGTTT
1 TACCCTCGAATTACAGAATTACTATTT
*
73614105 TACCCTCGATTTACAGAATTATCT-TTT
1 TACCCTCGAATTACAGAATTA-CTATTT
*
73614132 TACCCTC-AATTTATAGAATTACTATTT
1 TACCCTCGAA-TTACAGAATTACTATTT
* * *
73614159 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGAATTACAGAATTACTATTT
* *
73614186 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGAATTACAGAATTACTATTT
73614213 TACCCTCG-ATTGACAGAATTACTATTT
1 TACCCTCGAATT-ACAGAATTACTATTT
*
73614240 TACCCTCG-ATTGAAAGAATTACTATTT
1 TACCCTCGAATT-ACAGAATTACTATTT
73614267 TACCCTC-AATTTACAGAATTACTATTT
1 TACCCTCGAA-TTACAGAATTACTATTT
* * **
73614294 TACCCTCGATTTACTGAATTACCGTTT
1 TACCCTCGAATTACAGAATTACTATTT
* * *
73614321 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGAATTACAGAATTACTATTT
* **
73614348 TACCCTC-AATTTATAGAATTAC-CGTT
1 TACCCTCGAA-TTACAGAATTACTATTT
73614374 TACCCTCG-ATTGACAGAATTACTATTT
1 TACCCTCGAATT-ACAGAATTACTATTT
* *
73614401 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGAATTACAGAATTACTATTT
* * *
73614428 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGAATTACAGAATTACTATTT
* *
73614455 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGAATTACAGAATTACTATTT
* * *
73614482 TACCCTC-AATTTATAAAATTACCATTT
1 TACCCTCGAA-TTACAGAATTACTATTT
73614509 TACCC
1 TACCC
73614514 CTAGGGTGTG
Statistics
Matches: 403, Mismatches: 44, Indels: 30
0.84 0.09 0.06
Matches are distributed among these distances:
25 2 0.00
26 49 0.12
27 344 0.85
28 8 0.02
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGAATTACAGAATTACTATTT
Found at i:73614083 original size:81 final size:81
Alignment explanation
Indices: 73614025--73614513 Score: 639
Period size: 81 Copynumber: 6.1 Consensus size: 81
73614015 ATTATCAAAG
* *
73614025 TACCCTCGAATTACAAAATTAATGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTC-AAT
1 TACCCTCGAATTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*
73614089 TACAAAATTACTGTTT
66 TACAAAATTACTATTT
* * * *
73614105 TACCCTCGATTTACAGAATTATCT-TTTTACCCTCAATTTATAGAATTACTATTTTACCCTCGAT
1 TACCCTCGAATTACAAAATTA-CTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
* * *
73614169 TTATAGAATTACTGTTT
65 TTACAAAATTACTATTT
* * *
73614186 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTGACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGAATTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
*
73614251 GA-AAGAATTACTATTT
66 TACAA-AATTACTATTT
* * * **
73614267 TACCCTC-AATTTACAGAATTACTATTTTACCCTCGATTTACTGAATTACCGTTTTACCCTCGAT
1 TACCCTCGAA-TTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
*
73614331 TTACAAAATTACTGTTT
65 TTACAAAATTACTATTT
* * * *
73614348 TACCCTC-AATTTATAGAATTACCG-TTTACCCTCGATTGACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGAA-TTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGAT
73614411 TTACAAAATTACTATTT
65 TTACAAAATTACTATTT
* * *
73614428 TACCCTCGATTTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATT
1 TACCCTCGAATTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
* *
73614493 TATAAAATTACCATTT
66 TACAAAATTACTATTT
73614509 TACCC
1 TACCC
73614514 CTAGGGTGTG
Statistics
Matches: 361, Mismatches: 40, Indels: 15
0.87 0.10 0.04
Matches are distributed among these distances:
80 127 0.35
81 232 0.64
82 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (81 bp):
TACCCTCGAATTACAAAATTACTGTTTTACCCTCGATTTACAGAATTACTATTTTACCCTCGATT
TACAAAATTACTATTT
Found at i:73614177 original size:54 final size:54
Alignment explanation
Indices: 73614025--73614513 Score: 642
Period size: 54 Copynumber: 9.1 Consensus size: 54
73614015 ATTATCAAAG
* * * *
73614025 TACCCTCGAATTACAAAATTAATGTTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * *
73614079 TACCCTC-AATTACAAAATTACTGTTTTACCCTCGATTTACAGAATTATCT-TTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTA-CTATTT
* * * *
73614132 TACCCTCAATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* *
73614186 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTGACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * *
73614240 TACCCTCGATTGAAAGAATTACTATTTTACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* ** * *
73614294 TACCCTCGATTTACTGAATTACCGTTTTACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * ** *
73614348 TACCCTCAATTTATAGAATTAC-CGTTTACCCTCGATTGACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * *
73614401 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
* * * * *
73614455 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
73614509 TACCC
1 TACCC
73614514 CTAGGGTGTG
Statistics
Matches: 384, Mismatches: 47, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
53 96 0.25
54 288 0.75
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
Found at i:73614866 original size:33 final size:32
Alignment explanation
Indices: 73614817--73614880 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
73614807 CTCGCTGCAA
* *
73614817 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
73614850 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
73614881 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:73615051 original size:6 final size:6
Alignment explanation
Indices: 73615020--73615113 Score: 68
Period size: 6 Copynumber: 15.3 Consensus size: 6
73615010 TTGCATTCAC
* *
73615020 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
73615069 -TCGCCTG ATTCTA ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
73615114 AATGTTTCCT
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 55 0.81
7 7 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:73615055 original size:31 final size:31
Alignment explanation
Indices: 73615020--73615092 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
73615010 TTGCATTCAC
* * *
73615020 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
* *
73615051 ATTCTGATTCTGATTCTGTCGCCTGATTCTA
1 ATTCTGATTCTGATTCTGTCACCTGATACTA
73615082 ATTCTGATTCT
1 ATTCTGATTCT
73615093 CATTTTGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTA
Found at i:73618084 original size:39 final size:39
Alignment explanation
Indices: 73618030--73618155 Score: 189
Period size: 39 Copynumber: 3.2 Consensus size: 39
73618020 TTCAGTGATG
73618030 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
73618069 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
73618108 TATATCCAGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
73618147 TATGTCCGG
1 TATATCCGG
73618156 GCTAAAGTCC
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:73627339 original size:79 final size:81
Alignment explanation
Indices: 73627203--73627387 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
73627193 TTGAATGATG
*
73627203 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
73627267 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
73627282 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
73627344 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
73627362 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
73627388 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:73627401 original size:40 final size:40
Alignment explanation
Indices: 73627204--73627387 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
73627194 TGAATGATGT
* * * *
73627204 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
73627244 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
73627284 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73627322 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73627363 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73627388 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:73627409 original size:79 final size:79
Alignment explanation
Indices: 73627256--73627420 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
73627246 GGACTAAGAT
* **
73627256 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
73627321 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
73627335 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
73627398 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
73627414 CCGAAGG
1 CCGAAGG
73627421 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:73635145 original size:39 final size:40
Alignment explanation
Indices: 73635047--73635225 Score: 181
Period size: 39 Copynumber: 4.5 Consensus size: 40
73635037 AATGATGTCT
* * *
73635047 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
* *
73635087 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* *
73635127 GGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
73635166 AGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
73635205 GGGCTATGTCCCGAAGGCATT
1 GGGCTAAGTCCCGAAGGCATT
73635226 GAACGAGTAG
Statistics
Matches: 115, Mismatches: 17, Indels: 14
0.79 0.12 0.10
Matches are distributed among these distances:
38 1 0.01
39 64 0.56
40 40 0.35
41 10 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:73635208 original size:78 final size:78
Alignment explanation
Indices: 73635097--73635259 Score: 199
Period size: 78 Copynumber: 2.1 Consensus size: 78
73635087 GGACTAAGAT
* *
73635097 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCA-TTGAACGAG-TAGCT
*
73635160 AAATCCAGGTTAAGTC
64 AAATCC-GGTTAAATC
* *
73635176 CCGAAGGCA-TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTGAACGAGTAGCTA
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAGTCCCGAAGGCATTGAACGAGTAGCTA
* *
73635239 TATCCGGTTAAATT
65 AATCCGGTTAAATC
73635253 CCGAAGG
1 CCGAAGG
73635260 TACGATTTGG
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
77 18 0.24
78 37 0.50
79 19 0.26
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGTCCCGAAGGCATTGAACGAGTAGCTAA
ATCCGGTTAAATC
Found at i:73640378 original size:46 final size:46
Alignment explanation
Indices: 73640218--73640440 Score: 242
Period size: 46 Copynumber: 4.8 Consensus size: 46
73640208 CGATATTTGG
*
73640218 CGTCCGAACTCGTTGAGTTGAGT-CGAGTTCACTTATGGATGCAAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * *
73640263 CGTCCGAACTCGTTTAGTTGAGTCCGAGTTC-GTGA--GATG-TAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*
73640305 CTAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 C---G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* *
73640356 CGTCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * *
73640402 CGCCCGAGA-TCATTGAGTTGAGTCCGATTTCGCTTATGG
1 CGTCCGA-ACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73640441 GCGGGTTACA
Statistics
Matches: 149, Mismatches: 18, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
42 3 0.02
43 4 0.03
45 25 0.17
46 80 0.54
47 27 0.18
48 3 0.02
50 4 0.03
51 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.30
Consensus pattern (46 bp):
CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:73645618 original size:46 final size:46
Alignment explanation
Indices: 73645565--73645835 Score: 230
Period size: 46 Copynumber: 5.8 Consensus size: 46
73645555 GATATTTGAG
*
73645565 CGTCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * * *
73645611 CGTCCGAACTCGTTTAGTTGAGTCCGAGTTC-GTGA--GATGTAACTA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A
* * * *
73645656 GGCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 --CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * * * *
73645704 CGTCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--AATGTAACTA
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A
* *
73645749 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 --CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * * * * *
73645797 CGCCCGAGCTCGTTGAATTGAATCTGAGTTCGCTTATGG
1 CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73645836 GCGGGTTACA
Statistics
Matches: 175, Mismatches: 36, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
43 10 0.06
45 6 0.03
46 88 0.50
47 56 0.32
48 6 0.03
50 9 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CGTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:73645682 original size:47 final size:47
Alignment explanation
Indices: 73645613--73645781 Score: 195
Period size: 47 Copynumber: 3.6 Consensus size: 47
73645603 GATGCAAACG
*
73645613 TCCGAACTCGTTTAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * * * *
73645660 TCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCA
* *
73645706 TCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
73645753 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
73645782 ACTTATGGAT
Statistics
Matches: 99, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
45 3 0.03
46 26 0.26
47 54 0.55
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:73645733 original size:93 final size:93
Alignment explanation
Indices: 73645567--73645828 Score: 434
Period size: 93 Copynumber: 2.8 Consensus size: 93
73645557 TATTTGAGCG
* *
73645567 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTTAGTTGA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
* *
73645632 GTCCGAGTTCGTGAGATGTAACTAGGCA
66 GTCTGAGTTCGTGAAATGTAACTAGGCA
*
73645660 TCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
73645725 GTCTGAGTTCGTGAAATGTAACTAGGCA
66 GTCTGAGTTCGTGAAATGTAACTAGGCA
* * * *
73645753 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAATTGA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
*
73645818 ATCTGAGTTCG
66 GTCTGAGTTCG
73645829 CTTATGGGCG
Statistics
Matches: 158, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
GTCTGAGTTCGTGAAATGTAACTAGGCA
Found at i:73667146 original size:40 final size:40
Alignment explanation
Indices: 73667091--73667272 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
73667081 TATTCGAATG
73667091 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
73667131 ATATCCGGGCTAAGTCCCGAAGGAATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
73667171 ATATCCGGGCTAAGTCCCAAAAG-ATTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTATTGACT
* *
73667211 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
73667251 ATATCC-GGCTAAATCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
73667273 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 14 0.11
40 109 0.86
41 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:73673738 original size:30 final size:30
Alignment explanation
Indices: 73673702--73673761 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
73673692 TCTTTAATAC
73673702 AGCAAATGACATTCAAACAAAAAACTTATA
1 AGCAAATGACATTCAAACAAAAAACTTATA
73673732 AGCAAATGACATTCAAACAAAAAACTTATA
1 AGCAAATGACATTCAAACAAAAAACTTATA
73673762 TAGTGAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.57, C:0.17, G:0.07, T:0.20
Consensus pattern (30 bp):
AGCAAATGACATTCAAACAAAAAACTTATA
Found at i:73676892 original size:36 final size:36
Alignment explanation
Indices: 73676852--73676932 Score: 153
Period size: 36 Copynumber: 2.2 Consensus size: 36
73676842 TAGTGTATTT
*
73676852 ATTAATGTTTTTAAAGGGTAAAAAGGTAAATAGGTA
1 ATTAAAGTTTTTAAAGGGTAAAAAGGTAAATAGGTA
73676888 ATTAAAGTTTTTAAAGGGTAAAAAGGTAAATAGGTA
1 ATTAAAGTTTTTAAAGGGTAAAAAGGTAAATAGGTA
73676924 ATTAAAGTT
1 ATTAAAGTT
73676933 AATAATAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.33
Consensus pattern (36 bp):
ATTAAAGTTTTTAAAGGGTAAAAAGGTAAATAGGTA
Found at i:73676946 original size:36 final size:36
Alignment explanation
Indices: 73676870--73676946 Score: 102
Period size: 36 Copynumber: 2.1 Consensus size: 36
73676860 TTTTAAAGGG
** **
73676870 TAAAAAGGTAAATAGGTAATTAAAGTTTTTAAAGGG
1 TAAAAAGGTAAATAGGTAATTAAAGTTAATAAAGAA
73676906 TAAAAAGGTAAATAGGTAATTAAAGTTAATAATA-AA
1 TAAAAAGGTAAATAGGTAATTAAAGTTAATAA-AGAA
73676942 TAAAA
1 TAAAA
73676947 TAAAAGCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
36 35 0.97
37 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.29
Consensus pattern (36 bp):
TAAAAAGGTAAATAGGTAATTAAAGTTAATAAAGAA
Found at i:73679993 original size:16 final size:15
Alignment explanation
Indices: 73679950--73679997 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
73679940 GTCACTAGGA
*
73679950 GCTATGTGATTATGA
1 GCTATGTGATTATGT
**
73679965 GCTCATGAAATTATGT
1 GCT-ATGTGATTATGT
73679981 GCATATGTGATTATGT
1 GC-TATGTGATTATGT
73679997 G
1 G
73679998 AATCTGGGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 3 0.12
16 22 0.85
17 1 0.04
ACGTcount: A:0.27, C:0.08, G:0.25, T:0.40
Consensus pattern (15 bp):
GCTATGTGATTATGT
Found at i:73683456 original size:27 final size:28
Alignment explanation
Indices: 73683372--73683469 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
73683362 CATGAGATTG
* * * *
73683372 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
73683401 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
73683429 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73683456 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
73683470 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73683480 original size:27 final size:27
Alignment explanation
Indices: 73683400--73683482 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
73683390 TAAATTGTAC
* *
73683400 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
73683428 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
73683455 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
73683482 A
1 A
73683483 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:73683483 original size:29 final size:27
Alignment explanation
Indices: 73683372--73683483 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
73683362 CATGAGATTG
** * *
73683372 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
73683401 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
73683429 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
73683456 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
73683484 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:73691539 original size:27 final size:28
Alignment explanation
Indices: 73691455--73691549 Score: 138
Period size: 28 Copynumber: 3.4 Consensus size: 28
73691445 CATGAGATTG
* * *
73691455 GCACTAAGTGTGCGGGTTTAAATTGTATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
73691484 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
73691512 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73691539 GCACTGAGTGT
1 GCACTAAGTGT
73691550 TCGGACTTAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 21 0.34
28 23 0.37
29 18 0.29
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73691563 original size:27 final size:27
Alignment explanation
Indices: 73691480--73691565 Score: 93
Period size: 27 Copynumber: 3.1 Consensus size: 27
73691470 GTTTAAATTG
* *
73691480 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGA-CTTGAATA
* *
73691508 TATAGCACTAAGTGTGCGAGTTGATTA
1 TATAGCACTAAGTGTGCGACTTGAATA
* *
73691535 TATAGCACTGAGTGTTCGGACTT-AATA
1 TATAGCACTAAGTGTGC-GACTTGAATA
73691562 TATA
1 TATA
73691566 TTTTTGAATC
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
27 29 0.56
28 23 0.44
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (27 bp):
TATAGCACTAAGTGTGCGACTTGAATA
Found at i:73691870 original size:20 final size:20
Alignment explanation
Indices: 73691845--73691886 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
73691835 GGAATGTGAA
73691845 TGCATGACTTGGTATGAGAT
1 TGCATGACTTGGTATGAGAT
73691865 TGCATGACTTGGTATGAGAT
1 TGCATGACTTGGTATGAGAT
73691885 TG
1 TG
73691887 AACTGATAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.10, G:0.31, T:0.36
Consensus pattern (20 bp):
TGCATGACTTGGTATGAGAT
Found at i:73695378 original size:40 final size:40
Alignment explanation
Indices: 73695331--73695532 Score: 264
Period size: 40 Copynumber: 5.0 Consensus size: 40
73695321 GGCTTCAACT
** *
73695331 GGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
** * *
73695371 GGATATAGTAGTTCGAACAAATGCCTTCGGGACTTAACCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
*
73695411 GGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCC
1 GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
73695451 GGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAACAC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
* *
73695491 GGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
73695531 GG
1 GG
73695533 TTATCATCCG
Statistics
Matches: 142, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (40 bp):
GGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC
Found at i:73702415 original size:41 final size:41
Alignment explanation
Indices: 73702370--73702450 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
73702360 ATGTATATCC
* * *
73702370 AGGGGTACTGTAGTACAAACAGGGGCACGTATGTGCAATTT
1 AGGGGTACCGAAGAACAAACAGGGGCACGTATGTGCAATTT
*
73702411 AGGGGTACCGAAGAACAAACAGGGGCACGTATGTGTAATT
1 AGGGGTACCGAAGAACAAACAGGGGCACGTATGTGCAATT
73702451 CAATATTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (41 bp):
AGGGGTACCGAAGAACAAACAGGGGCACGTATGTGCAATTT
Found at i:73706009 original size:43 final size:43
Alignment explanation
Indices: 73705946--73706039 Score: 134
Period size: 43 Copynumber: 2.2 Consensus size: 43
73705936 TCTTACTCGA
* *
73705946 AATCAAATAATAATGCCAATGTCCCAAACATGATTTTACACAT
1 AATCACATAATAATGCCAATGTCCCAAACATGATCTTACACAT
* * * *
73705989 AATCACATAATGATGTCAATGTCCCAGACATGGTCTTACACAT
1 AATCACATAATAATGCCAATGTCCCAAACATGATCTTACACAT
73706032 AATCACAT
1 AATCACAT
73706040 CTCGTTAATC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (43 bp):
AATCACATAATAATGCCAATGTCCCAAACATGATCTTACACAT
Found at i:73717526 original size:126 final size:126
Alignment explanation
Indices: 73717301--73717555 Score: 386
Period size: 126 Copynumber: 2.0 Consensus size: 126
73717291 TTATAGCCTC
* *
73717301 ATTTTTCTACGAACTACTGTAGTAAAAGAGCGTCCACGTAGGAGCTTTTTTCAAAAATTTTGCTA
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTAGGAGCTTTTTTCAAAAATTTTGCTA
* * * * * *
73717366 ATAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAATGTTTACTCAAAATT
66 ACAGTGCATCCTGCTTGAAACATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
*
73717427 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGT-GAGAGCTTTTTTCAGAAATTTTGCT
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTAG-GAGCTTTTTTCAAAAATTTTGCT
* * *
73717491 GACAGTGCATCCTGCTTGAAACATTTTTGACACTATTTGTTCAGAAACGTCTACTTAAAATT
65 AACAGTGCATCCTGCTTGAAACATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
73717553 ATT
1 ATT
73717556 CTTGCAGAAA
Statistics
Matches: 116, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
125 1 0.01
126 115 0.99
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTAGGAGCTTTTTTCAAAAATTTTGCTA
ACAGTGCATCCTGCTTGAAACATTTTCGACACTATTTGTTCAGAAACGTCTACTCAAAATT
Found at i:73718129 original size:16 final size:16
Alignment explanation
Indices: 73718108--73718138 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
73718098 ATAAATATAT
73718108 CCTAATTTAATCAATC
1 CCTAATTTAATCAATC
73718124 CCTAATTTAATCAAT
1 CCTAATTTAATCAAT
73718139 TAACCCTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (16 bp):
CCTAATTTAATCAATC
Found at i:73718282 original size:21 final size:22
Alignment explanation
Indices: 73718240--73718286 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
73718230 CCTTAAATTA
*
73718240 TAAACCCTAAAAACCCTAACCC
1 TAAACCCTAAAAACCATAACCC
73718262 TAAACCCTAAAAACCAT-ACCC
1 TAAACCCTAAAAACCATAACCC
73718283 TAAA
1 TAAA
73718287 TCAATTAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.49, C:0.36, G:0.00, T:0.15
Consensus pattern (22 bp):
TAAACCCTAAAAACCATAACCC
Found at i:73719960 original size:31 final size:26
Alignment explanation
Indices: 73719903--73719953 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
73719893 TAAAAGAGTA
73719903 AGCCTATTTTATGTGATTGAATAATG
1 AGCCTATTTTATGTGATTGAATAATG
* *
73719929 AGCCTGTTTTATGTGATTGAGTAAT
1 AGCCTATTTTATGTGATTGAATAAT
73719954 AAAATGAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (26 bp):
AGCCTATTTTATGTGATTGAATAATG
Found at i:73720658 original size:28 final size:28
Alignment explanation
Indices: 73720582--73720659 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
73720572 AACACAACAG
* *
73720582 GAAAGAATAAGCCTTCATGGTGAACTAT
1 GAAAGAATAAGCCTTTATGGCGAACTAT
* * *
73720610 GAAAGACTAAACGTTTATGGCGAACTAT
1 GAAAGAATAAGCCTTTATGGCGAACTAT
*
73720638 GAAAGAATAAGCCTTTGTGGCG
1 GAAAGAATAAGCCTTTATGGCG
73720660 GACTCCATAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (28 bp):
GAAAGAATAAGCCTTTATGGCGAACTAT
Found at i:73725576 original size:25 final size:25
Alignment explanation
Indices: 73725519--73725584 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
73725509 CATTTCACAG
*
73725519 CTTGTGTGAGCATTTATAGTTACAA
1 CTTGTGTGAGCAATTATAGTTACAA
** *
73725544 CTCATGTGAGCAATTATAGTTATAGA
1 CTTGTGTGAGCAATTATAGTTACA-A
73725570 -TTGTGTGAGC-ATTAT
1 CTTGTGTGAGCAATTAT
73725585 TCCTATGTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
24 5 0.15
25 28 0.82
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (25 bp):
CTTGTGTGAGCAATTATAGTTACAA
Found at i:73726754 original size:26 final size:26
Alignment explanation
Indices: 73726725--73726777 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
73726715 TCAAACATGC
73726725 ATTTAGGTCAATATA-CTCCTAGGGGT
1 ATTTAGGT-AATATATCTCCTAGGGGT
* * *
73726751 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATATATCTCCTAGGGGT
73726777 A
1 A
73726778 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTAATATATCTCCTAGGGGT
Found at i:73728140 original size:37 final size:37
Alignment explanation
Indices: 73728090--73728234 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
73728080 ACCTTTAGCT
* * *
73728090 CGGACGTAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
* *
73728127 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACA
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
73728164 CGAACATAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
*
73728201 CGGACATAATCTCCACACGTAGTCATCGAGTCTT
1 CGGACATAATCTCCACACGTAGTCATCGGGTCTT
73728235 TAGAGCTCGG
Statistics
Matches: 98, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
CGGACATAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:73728431 original size:47 final size:47
Alignment explanation
Indices: 73728353--73728861 Score: 831
Period size: 47 Copynumber: 10.7 Consensus size: 47
73728343 CCCTTCGGGA
* * * * * *
73728353 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73728400 CCTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73728447 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73728494 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73728541 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73728588 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73728635 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73728682 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73728731 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73728780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
73728827 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
73728862 AGAATCCTAA
Statistics
Matches: 440, Mismatches: 19, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 343 0.78
49 96 0.22
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73732160 original size:24 final size:24
Alignment explanation
Indices: 73732118--73732223 Score: 140
Period size: 24 Copynumber: 4.4 Consensus size: 24
73732108 GCCGGCCAAC
*
73732118 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
* * *
73732143 TCTTCTCCTTTATTAGCTCTTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
73732167 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
73732191 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
73732215 TCTTCTCCT
1 TCCTCTCCT
73732224 GACAGCCTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
24 68 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.37, G:0.06, T:0.39
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:73739287 original size:33 final size:35
Alignment explanation
Indices: 73739250--73739329 Score: 85
Period size: 33 Copynumber: 2.4 Consensus size: 35
73739240 CCTAAGACCA
*
73739250 TTCAGATAACAGTGATACTGGGCCAGAG-CCC-TT
1 TTCAGATAACAGTGAAACTGGGCCAGAGCCCCTTT
* * **
73739283 TTCAGATTACA-TTAAACTGGGCCTTAGCCCCTTT
1 TTCAGATAACAGTGAAACTGGGCCAGAGCCCCTTT
*
73739317 TTTAGATAACAGT
1 TTCAGATAACAGT
73739330 ACAGTACGGC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
32 12 0.32
33 13 0.35
34 11 0.30
35 1 0.03
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (35 bp):
TTCAGATAACAGTGAAACTGGGCCAGAGCCCCTTT
Found at i:73739674 original size:26 final size:26
Alignment explanation
Indices: 73739645--73739697 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
73739635 TCAAACATGC
73739645 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
73739671 ATTTCGGTATTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
73739697 A
1 A
73739698 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.15, G:0.23, T:0.42
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:73740948 original size:24 final size:24
Alignment explanation
Indices: 73740916--73740977 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
73740906 CCTTGACCAT
* **
73740916 CTCCTAAATATTCTCTTTTATCAG
1 CTCCTAAATCTTCTCCCTTATCAG
*
73740940 CTCCTAAATCCTCTCCCTTATCAG
1 CTCCTAAATCTTCTCCCTTATCAG
73740964 CTCCTAAATCTTCT
1 CTCCTAAATCTTCT
73740978 ACTGACAGCC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.23, C:0.34, G:0.03, T:0.40
Consensus pattern (24 bp):
CTCCTAAATCTTCTCCCTTATCAG
Found at i:73744417 original size:47 final size:47
Alignment explanation
Indices: 73744290--73744782 Score: 788
Period size: 47 Copynumber: 10.4 Consensus size: 47
73744280 CAGCCAAGAC
*
73744290 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTAAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
73744337 AGATGATATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AG-TG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
73744386 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
73744433 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
73744482 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
73744529 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
73744576 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
73744623 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
73744670 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
73744717 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
73744764 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
73744783 TCCCGAAGGG
Statistics
Matches: 420, Mismatches: 22, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 326 0.78
48 4 0.01
49 90 0.21
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:73744958 original size:37 final size:37
Alignment explanation
Indices: 73744902--73744980 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
73744892 CCGAGCTCTA
* *
73744902 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
73744939 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
73744976 AAGAC
1 AAGAC
73744981 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:73746893 original size:43 final size:43
Alignment explanation
Indices: 73746845--73746947 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
73746835 TTGGTTTTCA
73746845 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
73746888 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
73746931 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
73746948 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:73746964 original size:29 final size:29
Alignment explanation
Indices: 73746929--73747002 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
73746919 GTTGTGAGAT
* *
73746929 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
73746958 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
73746987 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
73747003 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:73747411 original size:40 final size:41
Alignment explanation
Indices: 73747313--73747495 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 41
73747303 TCGAATGATG
* *
73747313 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGC-AAGTGACTATA
* * * * * *
73747353 TCCGGACTAAGAT-TCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCAAGTGACTATA
* * *
73747393 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCAAGTGACTATA
*
73747433 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCAAGTGACTATA
** *
73747473 TCCATGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
73747496 ATCATGCTGG
Statistics
Matches: 119, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 99 0.83
41 19 0.16
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCAAGTGACTATA
Found at i:73747451 original size:80 final size:81
Alignment explanation
Indices: 73747313--73747509 Score: 197
Period size: 80 Copynumber: 2.5 Consensus size: 81
73747303 TCGAATGATG
** *
73747313 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATTCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCA
* *
73747375 TTGGTGCGAGTTACTAAA
65 TTCGTGCGAGTGA-TAAA
** *
73747393 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGAT-CCGAAGAGCA
* *
73747456 TTCGTGCTAGTGATATA
65 TTCGTGCGAGTGATAAA
** * * *
73747473 TCCATGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
73747510 GTGTATTCGG
Statistics
Matches: 97, Mismatches: 15, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
79 1 0.01
80 70 0.72
81 20 0.21
82 6 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCAT
TCGTGCGAGTGATAAA
Found at i:73750493 original size:47 final size:47
Alignment explanation
Indices: 73750424--73750742 Score: 494
Period size: 47 Copynumber: 6.7 Consensus size: 47
73750414 TTGGAGTTGA
73750424 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
73750471 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
73750518 ATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
73750565 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
73750612 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * * * *
73750661 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
73750708 ACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73750743 TCCCGAAGAG
Statistics
Matches: 253, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
47 207 0.82
49 46 0.18
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:73750919 original size:37 final size:37
Alignment explanation
Indices: 73750862--73750939 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
73750852 CGAGCTCTAG
* * *
73750862 AGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGTA
1 AGACCCGATAACTACATGTGGAG-ATTATGTCCGGGTA
*
73750899 AGACCCGATAACTTCATGTGGAGATTATGTCCGGGTA
1 AGACCCGATAACTACATGTGGAGATTATGTCCGGGTA
73750936 AGAC
1 AGAC
73750940 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
37 35 0.97
38 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AGACCCGATAACTACATGTGGAGATTATGTCCGGGTA
Found at i:73755964 original size:41 final size:41
Alignment explanation
Indices: 73755919--73755996 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
73755909 AAGACAATTC
* *
73755919 ATATTCAGGCCCGGGCCCATATC-CGATATAGATACAGATAT
1 ATATTCAGGCCCGAGCCAATATCAC-ATATAGATACAGATAT
* * *
73755960 ATATTCGGGCCTGAGCCAATTTCACATATAGATACAG
1 ATATTCAGGCCCGAGCCAATATCACATATAGATACAG
73755997 TTACAGATAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
41 30 0.97
42 1 0.03
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (41 bp):
ATATTCAGGCCCGAGCCAATATCACATATAGATACAGATAT
Found at i:73759071 original size:17 final size:16
Alignment explanation
Indices: 73759049--73759080 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
73759039 ATCCATATAA
73759049 TTGAAAATTTTAGAGGG
1 TTGAAAATTTT-GAGGG
73759066 TTGAAAATTTTGAGG
1 TTGAAAATTTTGAGG
73759081 ATGAAATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.34, C:0.00, G:0.28, T:0.38
Consensus pattern (16 bp):
TTGAAAATTTTGAGGG
Found at i:73769030 original size:51 final size:51
Alignment explanation
Indices: 73768970--73769071 Score: 150
Period size: 51 Copynumber: 2.0 Consensus size: 51
73768960 TTCCACCACC
* * * *
73768970 ATTAGTTAACCGCACCACCGCTAGACCATCATCGTGACCATCGCTCTCCTT
1 ATTAGTTAACCGCACCACCGCTAGACCACCATCATGACCACCACTCTCCTT
* *
73769021 ATTAGTTAACCGCACCACCGCTGGACCCCCATCATGACCACCACTCTCCTT
1 ATTAGTTAACCGCACCACCGCTAGACCACCATCATGACCACCACTCTCCTT
73769072 TTTCTTGATA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.24, C:0.40, G:0.13, T:0.24
Consensus pattern (51 bp):
ATTAGTTAACCGCACCACCGCTAGACCACCATCATGACCACCACTCTCCTT
Found at i:73771594 original size:40 final size:40
Alignment explanation
Indices: 73771397--73771580 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
73771387 CGAATGATGT
* * * *
73771397 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
73771437 TCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
73771477 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73771515 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
73771556 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
73771581 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:73771602 original size:79 final size:79
Alignment explanation
Indices: 73771449--73771603 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
73771439 GGACTAAGAT
* **
73771449 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
73771514 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
73771528 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
73771591 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
73771604 ATTCCAAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:73773469 original size:24 final size:24
Alignment explanation
Indices: 73773442--73773513 Score: 108
Period size: 24 Copynumber: 3.0 Consensus size: 24
73773432 ATTACTACAA
73773442 TATTGAGTGGCTTGACCACAACGT
1 TATTGAGTGGCTTGACCACAACGT
* * *
73773466 TATTGAGTGACTTGACCACAATGC
1 TATTGAGTGGCTTGACCACAACGT
*
73773490 TATTGAGTGGATTGACCACAACGT
1 TATTGAGTGGCTTGACCACAACGT
73773514 GCAGCTTGTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (24 bp):
TATTGAGTGGCTTGACCACAACGT
Found at i:73777429 original size:26 final size:27
Alignment explanation
Indices: 73777400--73777516 Score: 107
Period size: 27 Copynumber: 4.4 Consensus size: 27
73777390 TTAGTTTACC
73777400 AAATTACTGAAATACCCCTAG-TTGTA
1 AAATTACTGAAATACCCCTAGTTTGTA
* * *
73777426 AAATTAC-CAAAGTACCCCCAGTTTATA
1 AAATTACTGAAA-TACCCCTAGTTTGTA
** * *
73777453 AAATTACCCAAATATCCTCGAG-TTGTA
1 AAATTACTGAAATA-CCCCTAGTTTGTA
*
73777480 AAATTACTGAAATA-CCCTCAGTTTGCA
1 AAATTACTGAAATACCCCT-AGTTTGTA
73777507 AAATTACTGA
1 AAATTACTGA
73777517 TTATCAAAGT
Statistics
Matches: 74, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
25 5 0.07
26 17 0.23
27 43 0.58
28 9 0.12
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCCTAGTTTGTA
Found at i:73777556 original size:27 final size:27
Alignment explanation
Indices: 73777526--73777962 Score: 543
Period size: 27 Copynumber: 16.2 Consensus size: 27
73777516 ATTATCAAAG
*
73777526 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
**
73777553 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
73777580 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
73777607 TACCCTCGATTTATAGAACTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
73777634 TACCCTCGATTTACATAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* ** *
73777661 TACCATCGATTTGTAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
73777688 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * * *
73777715 TACCCTCGATTAAGAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
73777742 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
**
73777769 TACCCTTAATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
73777796 TACCCTCGATTTATAGAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACT-GTTT
73777823 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * *
73777850 TACCCTCGATTGACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
73777877 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGTTT
* *
73777904 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
* * **
73777931 TACCCTCGATTTATAAATTTACCATTT
1 TACCCTCGATTTACAAAATTACTGTTT
73777958 TACCC
1 TACCC
73777963 CTAGGGTGTT
Statistics
Matches: 359, Mismatches: 49, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 1 0.00
27 357 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:73777962 original size:81 final size:81
Alignment explanation
Indices: 73777526--73777943 Score: 604
Period size: 81 Copynumber: 5.2 Consensus size: 81
73777516 ATTATCAAAG
*
73777526 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
73777591 TATAAAATTACCGTTT
66 TATAAAATTACTGTTT
* * * *
73777607 TACCCTCGATTTATAGAACTACTGTTTTACCCTCGATTTACATAATTACTATTTTACCATCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
* *
73777672 TGTAAAATTACTATTT
66 TATAAAATTACTGTTT
* * * * * *
73777688 TACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTAAGAGAATTATTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
73777753 TACAAAATTACTGTTT
66 TATAAAATTACTGTTT
** * * *
73777769 TACCCTTAATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTA-TCATTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACT-ATTTTACCCTCGAT
*
73777833 TTACAAAATTACTGTTT
65 TTATAAAATTACTGTTT
* *
73777850 TACCCTCGATTGACAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
*
73777915 TATAGAATTACTGTTT
66 TATAAAATTACTGTTT
73777931 TACCCTCGATTTA
1 TACCCTCGATTTA
73777944 TAAATTTACC
Statistics
Matches: 300, Mismatches: 35, Indels: 4
0.88 0.10 0.01
Matches are distributed among these distances:
80 1 0.00
81 298 0.99
82 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.08, T:0.42
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
TATAAAATTACTGTTT
Found at i:73778482 original size:12 final size:12
Alignment explanation
Indices: 73778457--73778494 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
73778447 CTGTCACCAA
*
73778457 ATTCTAATTCTG
1 ATTCTAGTTCTG
73778469 ATTCTCAGTT-TG
1 ATTCT-AGTTCTG
73778481 ATTCTAGTTCTG
1 ATTCTAGTTCTG
73778493 AT
1 AT
73778495 AATGTTTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
11 4 0.17
12 16 0.70
13 3 0.13
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (12 bp):
ATTCTAGTTCTG
Found at i:73780519 original size:38 final size:38
Alignment explanation
Indices: 73780476--73780551 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
73780466 TTTCAAATTA
73780476 ACATGTATAACCGTGACATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGACATATCCACTTAGCACCACGTT
* **
73780514 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGACATATCCACTTAGCACCACGTT
73780552 TTTCCATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGACATATCCACTTAGCACCACGTT
Found at i:73782135 original size:28 final size:28
Alignment explanation
Indices: 73782091--73782167 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
73782081 ACACGATAGT
* *
73782091 AAAGAATAAGCCCTTGTGGCAAACTATG
1 AAAGAAGAAGCCTTTGTGGCAAACTATG
* *
73782119 AAAGAAGAAGCCTTTGTTGCGAACTATG
1 AAAGAAGAAGCCTTTGTGGCAAACTATG
73782147 AAAGAAGACA-CCTTTGTGGCA
1 AAAGAAGA-AGCCTTTGTGGCA
73782168 GACTCCAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 41 0.98
29 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (28 bp):
AAAGAAGAAGCCTTTGTGGCAAACTATG
Found at i:73783755 original size:98 final size:98
Alignment explanation
Indices: 73783592--73783788 Score: 250
Period size: 98 Copynumber: 2.0 Consensus size: 98
73783582 GTAATCAACA
* * * * * * * **
73783592 AACTTTTTAAGTGGAGTCGCGATCGTAAATCGCCAACCTCTTTTTGAAGTGTTCGTGATCGTAAA
1 AACTGTTTAAGTGGAGTCACGATCGTAAATCGACAAACTCTCTATGAAGTGTTCATGATAATAAA
* * *
73783657 TTAATGAACTGAAGTCGTGATCATAAATCAATG
66 TCAATAAAATGAAGTCGTGATCATAAATCAATG
* *
73783690 AACTGTTTAAGTGGAGTCATGATCGTAAATTGACAAACTCTCTATGAAGTGTTCATGATAATAAA
1 AACTGTTTAAGTGGAGTCACGATCGTAAATCGACAAACTCTCTATGAAGTGTTCATGATAATAAA
* *
73783755 TCAATAAAATGAAGTTGTGATCGTAAATCAATG
66 TCAATAAAATGAAGTCGTGATCATAAATCAATG
73783788 A
1 A
73783789 GGTTTAAAAA
Statistics
Matches: 83, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
98 83 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (98 bp):
AACTGTTTAAGTGGAGTCACGATCGTAAATCGACAAACTCTCTATGAAGTGTTCATGATAATAAA
TCAATAAAATGAAGTCGTGATCATAAATCAATG
Found at i:73784083 original size:39 final size:40
Alignment explanation
Indices: 73784000--73784694 Score: 134
Period size: 39 Copynumber: 17.8 Consensus size: 40
73783990 TTAGTGGATT
* *
73784000 GTAAGAAAGCAAAAGGTCGTGATTGTAAGTCAAGGGACCA
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAAGAGACCA
* *
73784040 -TAAGAAAGCCAAAGGTTGTGATTGTAAATC-AGCAGA-CA
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAAG-AGACCA
** * *
73784078 GTAAGAAAGCTGAAGGTCATGATCT-TAAATCAACG-GACGA
1 GTAAGAAAGCAAAAGGTCGTGAT-TGTAAATCAA-GAGACCA
* ** * * **** * *
73784118 -TGAGAAAGCTGAAGGTTGCGGCCATAAATAAATG-GA-CT
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAA-GAGACCA
*** * *
73784156 GTAAGAAAGTTGAAGGTCATGATTGTAAATCAACGA-ACTA
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAA-GAGACCA
* * * ** * *
73784196 -TAAGAAATTC-GAAGGTCATGATCATATATC-AGTGAACCA
1 GTAAGAAA-GCAAAAGGTCGTGATTGTAAATCAAGAG-ACCA
* * ** **
73784235 -TAAGAAAGTC-GAAGGTCATGATCATAAATC-AGCAGA-TT
1 GTAAGAAAG-CAAAAGGTCGTGATTGTAAATCAAG-AGACCA
* *** * * * * *
73784273 GTAACAAAGTTGAAGTTCGTGATCGTAAATCAACA-AACG
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAAGAGACCA
** * *
73784312 GTAAGAAAGCCGAAGGTCATGATTGTAAATTAATG-GACCA
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAA-GAGACCA
* * *
73784352 -TAAGAAAGCCAAAGGTCGTG-TTCTTAAATCAATAGACC-
1 GTAAGAAAGCAAAAGGTCGTGATT-GTAAATCAAGAGACCA
** * *
73784390 GTAAGAAAGCCGAAGGTCGCGATTGTAAATC-AGTGGA-CA
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAAG-AGACCA
* * * * *
73784429 ATAAGAAAG-AAGAAGGTCATGATCGTAAATTAACAGACC-
1 GTAAGAAAGCAA-AAGGTCGTGATTGTAAATCAAGAGACCA
* * * * ** * *
73784468 GTAAGAAAGTAGAAGATTGTGATCATAAATCAACG-G-GCT
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAA-GAGACCA
* * ** *
73784507 GTAAGAAAGCCAATGGTCGTGATCATAAATCAATG-GA-CT
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAA-GAGACCA
* * * * *
73784546 GTAAGAAAGTC-AAAGGTCATGATCGTGATTCAACGA-ATC-
1 GTAAGAAAG-CAAAAGGTCGTGATTGTAAATCAA-GAGACCA
* * *
73784585 GTAAGAAAGCCAAAGGTCATGATCGTAAATCAATG-GACCA
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAA-GAGACCA
* ** *
73784625 -TAA-AAAGTC-AAGGGTCGTGATCATGAATC-AGTAGACC-
1 GTAAGAAAG-CAAAAGGTCGTGATTGTAAATCAAG-AGACCA
* * *
73784662 GTAAGAAATCCAAAGGTCGTGATCGTAAATCAA
1 GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAA
73784695 CGGACCTAAG
Statistics
Matches: 492, Mismatches: 116, Indels: 94
0.70 0.17 0.13
Matches are distributed among these distances:
36 1 0.00
37 2 0.00
38 40 0.08
39 433 0.88
40 15 0.03
41 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (40 bp):
GTAAGAAAGCAAAAGGTCGTGATTGTAAATCAAGAGACCA
Found at i:73784172 original size:117 final size:117
Alignment explanation
Indices: 73784051--73784761 Score: 402
Period size: 117 Copynumber: 6.1 Consensus size: 117
73784041 AAGAAAGCCA
* * *
73784051 AAGGTTGTGATTGTAAATCAGCAGACAGTAAGAAAGCTGAAGGTCATGATCTTAAATCAACGGAC
1 AAGGTCGTGATTGTAAATCAACAGACAGTAAGAAAGCTGAAGGTCATGATCTTAAATCAATGGAC
* * * * ** * *
73784116 GATGAGAAAGCTGAAGGTTGCGGCCATAAATAAATGGACTGTAAGAAAGTTG
66 CATAAGAAAGCTGAAGGTCGTGATCATAAATCAATAGACTGTAAGAAAGTTG
* * * * *
73784168 AAGGTCATGATTGTAAATCAAC-GAACTA-TAAGAAA-TTCGAAGGTCATGATCATATATCAGTG
1 AAGGTCGTGATTGTAAATCAACAG-AC-AGTAAGAAAGCT-GAAGGTCATGATCTTAAATCAATG
* * ** * *
73784230 AACCATAAGAAAG-TCGAAGGTCATGATCATAAATCAGCAGATTGTAACAAAGTTG
63 GACCATAAGAAAGCT-GAAGGTCGTGATCATAAATCAATAGACTGTAAGAAAGTTG
* * * * * *
73784285 AAGTTCGTGATCGTAAATCAACAAACGGTAAGAAAGCCGAAGGTCATGAT-TGTAAATTAATGGA
1 AAGGTCGTGATTGTAAATCAACAGACAGTAAGAAAGCTGAAGGTCATGATCT-TAAATCAATGGA
** * * * **
73784349 CCATAAGAAAGCCAAAGGTCGTGTTCTTAAATCAATAGACCGTAAGAAAGCCG
65 CCATAAGAAAGCTGAAGGTCGTGATCATAAATCAATAGACTGTAAGAAAGTTG
* *** * ** * * **
73784402 AAGGTCGCGATTGTAAATCAGTGGACAATAAGAAAGAAGAAGGTCATGATCGTAAATTAACAGAC
1 AAGGTCGTGATTGTAAATCAACAGACAGTAAGAAAGCTGAAGGTCATGATCTTAAATCAATGGAC
* * * ** * **
73784467 CGTAAGAAAG-TAGAAGATTGTGATCATAAATCAACGGGCTGTAAGAAAG-CC
66 CATAAGAAAGCT-GAAGGTCGTGATCATAAATCAATAGACTGTAAGAAAGTTG
** ** * * * * * * *
73784518 AATGGTCGTGATCATAAATCAATGGACTGTAAGAAAG-TCAAAGGTCATGATCGTGATTCAACGA
1 AA-GGTCGTGATTGTAAATCAACAGACAGTAAGAAAGCT-GAAGGTCATGATCTTAAATCAATGG
* * ** * * * ** *
73784582 ATCGTAAGAAAGCCAAAGGTCATGATCGTAAATCAATGGACCATAA-AAAG-TC
64 ACCATAAGAAAGCTGAAGGTCGTGATCATAAATCAATAGACTGTAAGAAAGTTG
** * ** * * ** * * *
73784634 AAGGGTCGTGATCATGAATCAGTAGACCGTAAGAAATCCAAAGGTCGTGATCGTAAATCAACGGA
1 AA-GGTCGTGATTGTAAATCAACAGACAGTAAGAAAGCTGAAGGTCATGATCTTAAATCAATGGA
* * * * * *
73784699 CC-TAAGAAAGTTGAAGGTCGGGATCGTGAATCAAT-GAATCGTAAGAAAGCTG
65 CCATAAGAAAGCTGAAGGTCGTGATCATAAATCAATAGACT-GTAAGAAAGTTG
*
73784751 AAGGTTGTGAT
1 AAGGTCGTGAT
73784762 CATAAATTAG
Statistics
Matches: 456, Mismatches: 120, Indels: 37
0.74 0.20 0.06
Matches are distributed among these distances:
114 2 0.00
115 30 0.07
116 77 0.17
117 346 0.76
118 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (117 bp):
AAGGTCGTGATTGTAAATCAACAGACAGTAAGAAAGCTGAAGGTCATGATCTTAAATCAATGGAC
CATAAGAAAGCTGAAGGTCGTGATCATAAATCAATAGACTGTAAGAAAGTTG
Found at i:73784675 original size:77 final size:76
Alignment explanation
Indices: 73783972--73784768 Score: 314
Period size: 78 Copynumber: 10.2 Consensus size: 76
73783962 ATTGAAAAAT
* * * ** * *
73783972 AAAGTTCGTGATCGTAAATTAGTGGATTGTAAGAAAG-CAAAAGGTCGTGATTGT-AAGTCAAGG
1 AAAGGTCGTGATCGTAAATCAATGGA-CCTAAGAAAGTC--AAGGTCGTGATCGTGAA-TCAACG
* *
73784035 GACCATAAGAAAGCC
62 AACCGTAAGAAAGCC
* * *** * * * * * *
73784050 AAAGGTTGTGATTGTAAATCAGCAGACAGTAAGAAAGCTGAAGGTCATGATCTTAAATCAACGGA
1 AAAGGTCGTGATCGTAAATCAATGGAC-CTAAGAAAG-TCAAGGTCGTGATCGTGAATCAACGAA
* *
73784115 -CGATGAGAAAGCT
64 CCG-TAAGAAAGCC
* * * ** * * * * * * *
73784128 GAAGGTTGCGGCCATAAATAAATGGACTGTAAGAAAGTTGAAGGTCATGATTGTAAATCAACGAA
1 AAAGGTCGTGATCGTAAATCAATGGAC-CTAAGAAAG-TCAAGGTCGTGATCGTGAATCAACGAA
** **
73784193 CTATAAGAAATTC
64 CCGTAAGAAAGCC
* * * * * * * * * *
73784206 GAAGGTCATGATCATATATCAGTGAACCATAAGAAAGTCGAAGGTCATGATCATAAATCAGC-AG
1 AAAGGTCGTGATCGTAAATCAATGGACC-TAAGAAAGTC-AAGGTCGTGATCGTGAATCAACGA-
** * **
73784270 ATTGTAACAAAGTT
63 ACCGTAAGAAAGCC
* * *** * * * * * * * *
73784284 GAAGTTCGTGATCGTAAATCAACAAACGGTAAGAAAGCCGAAGGTCATGATTGTAAATTAATGGA
1 AAAGGTCGTGATCGTAAATCAATGGAC-CTAAGAAAGTC-AAGGTCGTGATCGTGAATCAACGAA
*
73784349 CCATAAGAAAGCC
64 CCGTAAGAAAGCC
* * * * * * * ** *
73784362 AAAGGTCGTGTTCTTAAATCAATAGACCGTAAGAAAGCCGAAGGTCGCGATTGTAAATCAGTGGA
1 AAAGGTCGTGATCGTAAATCAATGGACC-TAAGAAAGTC-AAGGTCGTGATCGTGAATCAACGAA
** *
73784427 CAATAAGAAAG-A
64 CCGTAAGAAAGCC
* * ** * * * * * *
73784439 AGAAGGTCATGATCGTAAATTAACAGACCGTAAGAAAGTAGAAGATTGTGATCATAAATCAACGG
1 A-AAGGTCGTGATCGTAAATCAATGGACC-TAAGAAAGT-CAAGGTCGTGATCGTGAATCAACGA
* *
73784504 GCTGTAAGAAAGCC
63 ACCGTAAGAAAGCC
* * * * *
73784518 AATGGTCGTGATCATAAATCAATGGACTGTAAGAAAGTCAAAGGTCATGATCGTGATTCAACGAA
1 AAAGGTCGTGATCGTAAATCAATGGAC-CTAAGAAAGTC-AAGGTCGTGATCGTGAATCAACGAA
*
73784583 TCGTAAGAAAGCC
64 CCGTAAGAAAGCC
* *
73784596 AAAGGTCATGATCGTAAATCAATGGACCATAA-AAAGTCAAGGGTCGTGATCATGAATC-A-GTA
1 AAAGGTCGTGATCGTAAATCAATGGACC-TAAGAAAGTCAA-GGTCGTGATCGTGAATCAACG-A
*
73784658 GACCGTAAGAAATCC
63 -ACCGTAAGAAAGCC
* * * * *
73784673 AAAGGTCGTGATCGTAAATCAACGGACCTAAGAAAGTTGAAGGTCGGGATCGTGAATCAATGAAT
1 AAAGGTCGTGATCGTAAATCAATGGACCTAAGAAAG-TCAAGGTCGTGATCGTGAATCAACGAAC
*
73784738 CGTAAGAAAGCT
65 CGTAAGAAAGCC
* * *
73784750 GAAGGTTGTGATCATAAAT
1 AAAGGTCGTGATCGTAAAT
73784769 TAGAGAATCG
Statistics
Matches: 549, Mismatches: 145, Indels: 51
0.74 0.19 0.07
Matches are distributed among these distances:
75 1 0.00
76 7 0.01
77 108 0.20
78 429 0.78
79 4 0.01
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (76 bp):
AAAGGTCGTGATCGTAAATCAATGGACCTAAGAAAGTCAAGGTCGTGATCGTGAATCAACGAACC
GTAAGAAAGCC
Found at i:73784755 original size:39 final size:39
Alignment explanation
Indices: 73784289--73784762 Score: 219
Period size: 39 Copynumber: 12.2 Consensus size: 39
73784279 AAGTTGAAGT
* ** * **
73784289 TCGTGATCGTAAATCAACAAACGGTAAGAAAGCCGAAGG
1 TCGTGATCGTGAATCAATGAACCGTAAGAAAGCTAAAGG
* * * * * * *
73784328 TCATGATTGTAAATTAATGGACCATAAGAAAGCCAAAGG
1 TCGTGATCGTGAATCAATGAACCGTAAGAAAGCTAAAGG
* * * **
73784367 TCGTGTTCTTAAATCAAT-AGACCGTAAGAAAGCCGAAGG
1 TCGTGATCGTGAATCAATGA-ACCGTAAGAAAGCTAAAGG
* * * * * ** *
73784406 TCGCGATTGTAAATCAGTGGACAATAAGAAAG-AAGAAGG
1 TCGTGATCGTGAATCAATGAACCGTAAGAAAGCTA-AAGG
* * * * *
73784445 TCATGATCGTAAATTAA-CAGACCGTAAGAAAG-TAGAAGA
1 TCGTGATCGTGAATCAATGA-ACCGTAAGAAAGCTA-AAGG
* * * * ** * * *
73784484 TTGTGATCATAAATCAACGGGCTGTAAGAAAGCCAATGG
1 TCGTGATCGTGAATCAATGAACCGTAAGAAAGCTAAAGG
* * * *
73784523 TCGTGATCATAAATCAATGGACTGTAAGAAAG-TCAAAGG
1 TCGTGATCGTGAATCAATGAACCGTAAGAAAGCT-AAAGG
* * * * *
73784562 TCATGATCGTGATTCAACGAATCGTAAGAAAGCCAAAGG
1 TCGTGATCGTGAATCAATGAACCGTAAGAAAGCTAAAGG
* * * * *
73784601 TCATGATCGTAAATCAATGGACCATAA-AAAG-TCAAGGG
1 TCGTGATCGTGAATCAATGAACCGTAAGAAAGCT-AAAGG
* * * *
73784639 TCGTGATCATGAATCAGT-AGACCGTAAGAAATCCAAAGG
1 TCGTGATCGTGAATCAATGA-ACCGTAAGAAAGCTAAAGG
* * * * *
73784678 TCGTGATCGTAAATCAACGGACC-TAAGAAAGTTGAAGG
1 TCGTGATCGTGAATCAATGAACCGTAAGAAAGCTAAAGG
* * *
73784716 TCGGGATCGTGAATCAATGAATCGTAAGAAAGCTGAAGG
1 TCGTGATCGTGAATCAATGAACCGTAAGAAAGCTAAAGG
*
73784755 TTGTGATC
1 TCGTGATC
73784763 ATAAATTAGA
Statistics
Matches: 324, Mismatches: 97, Indels: 28
0.72 0.22 0.06
Matches are distributed among these distances:
38 57 0.18
39 266 0.82
40 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (39 bp):
TCGTGATCGTGAATCAATGAACCGTAAGAAAGCTAAAGG
Found at i:73788075 original size:24 final size:25
Alignment explanation
Indices: 73788047--73788110 Score: 87
Period size: 24 Copynumber: 2.6 Consensus size: 25
73788037 TCAACCAAAT
* * *
73788047 TCGCACACATAGTGCTA-ATTAAGC
1 TCGCACACATAGTGCCATACTAAAC
73788071 TCGCACACATAGTGCCATACTAAAC
1 TCGCACACATAGTGCCATACTAAAC
73788096 -CGCACACATAGTGCC
1 TCGCACACATAGTGCC
73788111 TAAAATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.33, C:0.31, G:0.16, T:0.20
Consensus pattern (25 bp):
TCGCACACATAGTGCCATACTAAAC
Found at i:73788161 original size:24 final size:24
Alignment explanation
Indices: 73788134--73788183 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
73788124 CATGCATCGA
*
73788134 CATTCAAATCTGCACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
* * *
73788158 CATTTAATTCCGGACACATAGTGC
1 CATTCAAATCCGCACACATAGTGC
73788182 CA
1 CA
73788184 ATGTTAACTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (24 bp):
CATTCAAATCCGCACACATAGTGC
Found at i:73788256 original size:94 final size:94
Alignment explanation
Indices: 73788139--73788326 Score: 304
Period size: 94 Copynumber: 2.0 Consensus size: 94
73788129 ATCGACATTC
* * *
73788139 AAATCTGCACACATAGTGCCATTTAATTCCGGACACATAGTGCCAATGTTAACTCACTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCACTATAATAA
*
73788204 GGCAATTTACTTAATTCAAAAAGCATATA
66 GGCAACTTACTTAATTCAAAAAGCATATA
* * *
73788233 AAATTTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCACTATAATAA
*
73788298 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAACTTACTTAATTCAAAAAGCATATA
73788327 CGGTCACCTT
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCACTATAATAA
GGCAACTTACTTAATTCAAAAAGCATATA
Found at i:73793043 original size:26 final size:25
Alignment explanation
Indices: 73793000--73793070 Score: 97
Period size: 26 Copynumber: 2.8 Consensus size: 25
73792990 GAGGAAGTGC
*
73793000 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGTTTTGCCCCAGTTTACCA
*
73793025 AAAAGGGTTTTTGCCCCAGTTTATCA
1 AAAAGGG-TTTTGCCCCAGTTTACCA
* *
73793051 AAAAGAGCTTTGCCCCAGTT
1 AAAAGGGTTTTGCCCCAGTT
73793071 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 19 0.46
26 22 0.54
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (25 bp):
AAAAGGGTTTTGCCCCAGTTTACCA
Found at i:73800906 original size:23 final size:24
Alignment explanation
Indices: 73800877--73800922 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
73800867 TTATAATATG
*
73800877 AAAATGACTGTTTT-CCCTAGGTA
1 AAAATGACTATTTTACCCTAGGTA
73800900 AAAATGACTATTTTACCCCTAGG
1 AAAATGACTATTTTA-CCCTAGG
73800923 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 13 0.65
25 7 0.35
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (24 bp):
AAAATGACTATTTTACCCTAGGTA
Found at i:73801098 original size:26 final size:25
Alignment explanation
Indices: 73801053--73801123 Score: 106
Period size: 26 Copynumber: 2.8 Consensus size: 25
73801043 GAGGAAGTGC
*
73801053 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
73801078 AAAAGGGCTTTTGCCCTAGTTTATCA
1 AAAAGGGC-TTTGCCCCAGTTTACCA
73801104 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
73801124 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 19 0.46
26 22 0.54
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:73801381 original size:31 final size:30
Alignment explanation
Indices: 73801341--73801426 Score: 129
Period size: 31 Copynumber: 2.8 Consensus size: 30
73801331 TATTGTTACA
73801341 ATAAAGGCTTCGGCCCAGTGATATGAATAAT
1 ATAAAGGCTTCGGCCCAGT-ATATGAATAAT
*
73801372 GA-AAAGGCTTTGGCCCAGTTATATGAATAAT
1 -ATAAAGGCTTCGGCCCAG-TATATGAATAAT
73801403 ATAAAGGCTTCGGCCCAGTATATG
1 ATAAAGGCTTCGGCCCAGTATATG
73801427 CTGAGATTGA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
30 7 0.14
31 41 0.82
32 2 0.04
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (30 bp):
ATAAAGGCTTCGGCCCAGTATATGAATAAT
Found at i:73805662 original size:40 final size:40
Alignment explanation
Indices: 73805607--73805683 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
73805597 CCATGTAAGT
73805607 CTATATCAGTTATATGGCTTTGGAGACAGGAATGAGCTTA
1 CTATATCAGTTATATGGCTTTGGAGACAGGAATGAGCTTA
73805647 CTATATCAGTTATATGGCTTTGGAGACAGGAATGAGC
1 CTATATCAGTTATATGGCTTTGGAGACAGGAATGAGC
73805684 CATGTAAGCC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (40 bp):
CTATATCAGTTATATGGCTTTGGAGACAGGAATGAGCTTA
Found at i:73810188 original size:31 final size:31
Alignment explanation
Indices: 73810145--73810208 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73810135 CCTTTTCATA
73810145 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
73810176 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
73810207 TT
1 TT
73810209 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:73810452 original size:24 final size:24
Alignment explanation
Indices: 73810415--73810543 Score: 192
Period size: 24 Copynumber: 5.4 Consensus size: 24
73810405 CTAGAGGCCT
*
73810415 AGCCTCTTTTAATAACT-GGGC-GA
1 AGCC-CTTTTAATAACTGGGGCATA
73810438 AGCCCTTTTTTAATAACTGGGGCATA
1 AGCCC--TTTTAATAACTGGGGCATA
73810464 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
73810487 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73810511 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73810535 AGCCCTTTT
1 AGCCCTTTT
73810544 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 3, Indels: 9
0.89 0.03 0.08
Matches are distributed among these distances:
22 1 0.01
23 27 0.28
24 60 0.61
25 4 0.04
26 6 0.06
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:73810475 original size:47 final size:50
Alignment explanation
Indices: 73810415--73810543 Score: 196
Period size: 47 Copynumber: 2.7 Consensus size: 50
73810405 CTAGAGGCCT
*
73810415 AGCCTCTTTTAATAACT-GGGC-GAAGCCCTTTTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTTAATAACTGGGGCATA
*
73810464 AGCCC-TTTAATAACTGGGGCATAAGCCC--TTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTTAATAACTGGGGCATA
73810511 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
73810544 GCACTTCCTC
Statistics
Matches: 73, Mismatches: 2, Indels: 9
0.87 0.02 0.11
Matches are distributed among these distances:
47 33 0.45
48 28 0.38
49 10 0.14
50 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (50 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTTAATAACTGGGGCATA
Found at i:73810615 original size:9 final size:9
Alignment explanation
Indices: 73810601--73810657 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73810591 ATCTCGTGTG
73810601 CATATCATA
1 CATATCATA
*
73810610 CATATCATGTG
1 CATATCA--TA
73810621 CATATCATA
1 CATATCATA
* *
73810630 CATGTCATGTG
1 CATATCA--TA
73810641 CATATCATA
1 CATATCATA
73810650 CATATCAT
1 CATATCAT
73810658 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:73810620 original size:20 final size:20
Alignment explanation
Indices: 73810597--73810659 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
73810587 GAACATCTCG
73810597 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
73810617 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
73810637 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
73810657 TGT
1 TGT
73810660 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:73818299 original size:31 final size:31
Alignment explanation
Indices: 73818256--73818319 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
73818246 CCTTTTCATA
73818256 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
73818287 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
73818318 TT
1 TT
73818320 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:73818613 original size:24 final size:24
Alignment explanation
Indices: 73818512--73818655 Score: 213
Period size: 24 Copynumber: 6.0 Consensus size: 24
73818502 GCTTTATCAT
*
73818512 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
73818537 ATAACTGGGGCA-AAGCCCTTTTATA
1 ATAACTGGGGCATAAGCCC-TTT-TA
73818562 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73818585 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
73818609 ATAACTGGGGCATAAGCCCTTTAA
1 ATAACTGGGGCATAAGCCCTTTTA
73818633 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73818656 GCACTTCCTC
Statistics
Matches: 111, Mismatches: 3, Indels: 11
0.89 0.02 0.09
Matches are distributed among these distances:
23 22 0.20
24 61 0.55
25 22 0.20
26 6 0.05
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73818724 original size:20 final size:20
Alignment explanation
Indices: 73818709--73818771 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
73818699 GAACATCTCG
73818709 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
73818729 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
73818749 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
73818769 TGT
1 TGT
73818772 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:73818727 original size:9 final size:9
Alignment explanation
Indices: 73818713--73818769 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
73818703 ATCTCGTGTG
73818713 CATATCATA
1 CATATCATA
*
73818722 CATATCATGTG
1 CATATCA--TA
73818733 CATATCATA
1 CATATCATA
* *
73818742 CATGTCATGTG
1 CATATCA--TA
73818753 CATATCATA
1 CATATCATA
73818762 CATATCAT
1 CATATCAT
73818770 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:73820779 original size:38 final size:38
Alignment explanation
Indices: 73820720--73820826 Score: 171
Period size: 38 Copynumber: 2.8 Consensus size: 38
73820710 CTCAGCATAT
73820720 ACTAGGCCGAAGCCTTTTCATATTTCATATTTCGTAAC
1 ACTAGGCCGAAGCCTTTTCATATTTCATATTTCGTAAC
*
73820758 ACT-GAGCTGAAGCCTTTTCATATTTCATATTTCGTAAC
1 ACTAG-GCCGAAGCCTTTTCATATTTCATATTTCGTAAC
* *
73820796 ACTAGGCCAAAACCTTTTCATATTTCATATT
1 ACTAGGCCGAAGCCTTTTCATATTTCATATT
73820827 ACTGGGTCGA
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
37 1 0.02
38 61 0.97
39 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.38
Consensus pattern (38 bp):
ACTAGGCCGAAGCCTTTTCATATTTCATATTTCGTAAC
Found at i:73821094 original size:26 final size:26
Alignment explanation
Indices: 73821065--73821137 Score: 119
Period size: 26 Copynumber: 2.8 Consensus size: 26
73821055 CTCTTTTAAT
* *
73821065 AACTGGGGCAAAAGGCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
73821091 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
73821117 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
73821138 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:73821218 original size:11 final size:11
Alignment explanation
Indices: 73821187--73821242 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
73821177 TTATGAATAC
73821187 ATCATGTGCAT
1 ATCATGTGCAT
*
73821198 ATCA--TACAT
1 ATCATGTGCAT
73821207 ATCATGTGCAT
1 ATCATGTGCAT
* *
73821218 ATCA--TACAC
1 ATCATGTGCAT
73821227 ATCATGTGCAT
1 ATCATGTGCAT
73821238 ATCAT
1 ATCAT
73821243 ATCAATCACG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:73821250 original size:20 final size:20
Alignment explanation
Indices: 73821185--73821243 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
73821175 ATTTATGAAT
73821185 ACATCATGTGCATATCATAC
1 ACATCATGTGCATATCATAC
*
73821205 ATATCATGTGCATATCATAC
1 ACATCATGTGCATATCATAC
73821225 ACATCATGTGCATATCATA
1 ACATCATGTGCATATCATA
73821244 TCAATCACGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.32
Consensus pattern (20 bp):
ACATCATGTGCATATCATAC
Found at i:73832133 original size:17 final size:18
Alignment explanation
Indices: 73832106--73832149 Score: 72
Period size: 18 Copynumber: 2.4 Consensus size: 18
73832096 AAGAAATTTC
73832106 AAAATATAAATAAAGA-TA
1 AAAATA-AAATAAAGAGTA
73832124 AAAATAAAATAAAGAGTA
1 AAAATAAAATAAAGAGTA
73832142 AAAATAAA
1 AAAATAAA
73832150 TAATAGGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (18 bp):
AAAATAAAATAAAGAGTA
Found at i:73832150 original size:17 final size:16
Alignment explanation
Indices: 73832106--73832152 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 16
73832096 AAGAAATTTC
73832106 AAAATATAAATAAAGAT
1 AAAA-ATAAATAAAGAT
73832123 AAAAATAAAATAAAGAGT
1 AAAAAT-AAATAAAGA-T
73832141 AAAAATAAATAA
1 AAAAATAAATAA
73832153 TAGGTGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.07
17 19 0.68
18 7 0.25
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (16 bp):
AAAAATAAATAAAGAT
Found at i:73836846 original size:18 final size:17
Alignment explanation
Indices: 73836823--73836860 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
73836813 AGGTTTCCAA
*
73836823 AAATAGAAATGGAAATGG
1 AAATAGAAAT-GAAAAGG
73836841 AAATAGAAATGAAAAGG
1 AAATAGAAATGAAAAGG
73836858 AAA
1 AAA
73836861 AGGAAAACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.63, C:0.00, G:0.24, T:0.13
Consensus pattern (17 bp):
AAATAGAAATGAAAAGG
Found at i:73838371 original size:55 final size:53
Alignment explanation
Indices: 73838284--73838517 Score: 228
Period size: 55 Copynumber: 4.4 Consensus size: 53
73838274 ATTAGGGTTT
* * *
73838284 AAGGATACCATGTAAGACCATGCCGAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTTCTAAGGC
* * * * *
73838339 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * *
73838394 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* * * *
73838447 AAGGATACCATGTAAGACCATGTCAAGACCTAGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
*
73838496 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
73838518 ACAACTCATG
Statistics
Matches: 149, Mismatches: 24, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
49 21 0.14
52 7 0.05
53 40 0.27
54 11 0.07
55 66 0.44
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:73838490 original size:108 final size:110
Alignment explanation
Indices: 73838291--73838491 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
73838281 TTTAAGGATA
* *
73838291 CCATGTAAGACCATGCCGAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
73838356 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATAGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
73838401 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* *
73838463 ACCATGTCAAGACCTAGCAATGGTAAGTT
65 ACCATGTCAAGACATAGCAATGATAAGTT
73838492 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 25 0.31
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATAGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:73838751 original size:16 final size:16
Alignment explanation
Indices: 73838730--73838760 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73838720 ATAAATTTGA
73838730 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
73838746 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
73838761 AGTGAGTAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:73850870 original size:20 final size:20
Alignment explanation
Indices: 73850845--73850884 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
73850835 AATTGAAAGT
*
73850845 TAATGCAATGAATCTTAGAA
1 TAATGCAATGAATCCTAGAA
73850865 TAATGCAATGAATCCTAGAA
1 TAATGCAATGAATCCTAGAA
73850885 ATGTAAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (20 bp):
TAATGCAATGAATCCTAGAA
Found at i:73852760 original size:29 final size:28
Alignment explanation
Indices: 73852715--73852818 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 28
73852705 TGAACACGTC
* *
73852715 AGAAAATGGAAGTCTTTGTGGCTTATCTA
1 AGAAAATGGAAGCCTTTGTGGCATAT-TA
** *
73852744 AGAAAATGGAAGCCTTTGTGAAAAATTA
1 AGAAAATGGAAGCCTTTGTGGCATATTA
*
73852772 AGAAAATGGAAGCCTTTGTGGCGTATTTA
1 AGAAAATGGAAGCCTTTGTGGCATA-TTA
*
73852801 TGAAAATGGAAGCCTTTG
1 AGAAAATGGAAGCCTTTG
73852819 CGGAAAAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
28 23 0.36
29 41 0.64
ACGTcount: A:0.36, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
AGAAAATGGAAGCCTTTGTGGCATATTA
Found at i:73852777 original size:57 final size:58
Alignment explanation
Indices: 73852715--73852828 Score: 176
Period size: 57 Copynumber: 2.0 Consensus size: 58
73852705 TGAACACGTC
* * *
73852715 AGAAAATGGAAGTCTTTGTGGCTTATCTAAGAAAATGGAAGCCTTTG-TGAAAAATTA
1 AGAAAATGGAAGCCTTTGTGGCGTATCTAAGAAAATGGAAGCCTTTGCGGAAAAATTA
* *
73852772 AGAAAATGGAAGCCTTTGTGGCGTATTTATGAAAATGGAAGCCTTTGCGGAAAAATT
1 AGAAAATGGAAGCCTTTGTGGCGTATCTAAGAAAATGGAAGCCTTTGCGGAAAAATT
73852829 TGTAAAAGAC
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 43 0.84
58 8 0.16
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.29
Consensus pattern (58 bp):
AGAAAATGGAAGCCTTTGTGGCGTATCTAAGAAAATGGAAGCCTTTGCGGAAAAATTA
Found at i:73852835 original size:29 final size:28
Alignment explanation
Indices: 73852746--73852835 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 28
73852736 CTTATCTAAG
* *
73852746 AAAATGGAAGCCTTTGTGAAAAATTAAG-
1 AAAATGGAAGCCTTTGGGAAAAATT-TGT
*** *
73852774 AAAATGGAAGCCTTTGTGG-CGTATTTAT
1 AAAATGGAAGCCTTTG-GGAAAAATTTGT
73852802 GAAAATGGAAGCCTTTGCGGAAAAATTTGT
1 -AAAATGGAAGCCTTTG-GGAAAAATTTGT
73852832 AAAA
1 AAAA
73852836 GACACCTTGT
Statistics
Matches: 47, Mismatches: 11, Indels: 7
0.72 0.17 0.11
Matches are distributed among these distances:
28 19 0.40
29 23 0.49
30 5 0.11
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (28 bp):
AAAATGGAAGCCTTTGGGAAAAATTTGT
Found at i:73857196 original size:8 final size:8
Alignment explanation
Indices: 73857185--73857210 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
73857175 ATTTAATATA
73857185 TTACAACT
1 TTACAACT
73857193 TTACAACT
1 TTACAACT
73857201 TTACAACT
1 TTACAACT
73857209 TT
1 TT
73857211 CTCTAAAGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (8 bp):
TTACAACT
Found at i:73860042 original size:18 final size:19
Alignment explanation
Indices: 73860016--73860051 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
73860006 GATTTTCTTT
73860016 TAGTAGTTTAGG-TTTTTC
1 TAGTAGTTTAGGATTTTTC
*
73860034 TAGTGGTTTAGGATTTTT
1 TAGTAGTTTAGGATTTTT
73860052 TTTAAGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.17, C:0.03, G:0.25, T:0.56
Consensus pattern (19 bp):
TAGTAGTTTAGGATTTTTC
Found at i:73863961 original size:18 final size:18
Alignment explanation
Indices: 73863938--73863973 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
73863928 ATGACTTACC
73863938 TATCAAACACACCATTTT
1 TATCAAACACACCATTTT
73863956 TATCAAACACACCATTTT
1 TATCAAACACACCATTTT
73863974 AGCCGACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (18 bp):
TATCAAACACACCATTTT
Found at i:73865536 original size:30 final size:30
Alignment explanation
Indices: 73865500--73865559 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
73865490 TTCCCAAGCC
*
73865500 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
73865530 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
73865560 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:73869097 original size:28 final size:28
Alignment explanation
Indices: 73869031--73869186 Score: 206
Period size: 28 Copynumber: 5.5 Consensus size: 28
73869021 CATGAGATTG
* * **
73869031 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
73869060 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73869088 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
*
73869117 GCACTAAGTGTGC-AGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
73869145 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73869173 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73869187 GACTTACTAT
Statistics
Matches: 116, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
28 73 0.63
29 43 0.37
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73869120 original size:57 final size:57
Alignment explanation
Indices: 73869031--73869185 Score: 217
Period size: 57 Copynumber: 2.7 Consensus size: 57
73869021 CATGAGATTG
* * * *
73869031 GCACTAAGTGTGCGGGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATAT-A
1 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGC-AGTTTGATTATATAA
*
73869088 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCAGTTTGATTATATAA
*
73869145 GCACTAAGTGTGCGAGTTTGATTATATAA-CACTAAGTGTGC
1 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGC
73869186 GGACTTACTA
Statistics
Matches: 90, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 24 0.27
57 63 0.70
58 3 0.03
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.34
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCAGTTTGATTATATAA
Found at i:73875591 original size:40 final size:40
Alignment explanation
Indices: 73875517--73875701 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
73875507 GCTACTCGTT
*
73875517 CAAATGCCTTC-GGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
73875556 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
73875596 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
73875636 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
73875677 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73875702 CATCATTCAA
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
39 14 0.11
40 105 0.80
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73880258 original size:29 final size:28
Alignment explanation
Indices: 73880211--73880367 Score: 156
Period size: 29 Copynumber: 5.5 Consensus size: 28
73880201 CATGAGATTG
* *
73880211 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-AATTGTATA
* * *
73880240 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
73880268 GCACTAAGTGTGTGAGTTTGATTATGTA-A
1 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
*
73880297 GCACTAAGTGTGCGAGTTTGATTATGTA-A
1 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
* *
73880326 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
*
73880354 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
73880368 GACTTACTAT
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
27 3 0.03
28 38 0.35
29 66 0.60
30 3 0.03
ACGTcount: A:0.29, C:0.11, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:73880300 original size:57 final size:58
Alignment explanation
Indices: 73880211--73880366 Score: 210
Period size: 57 Copynumber: 2.7 Consensus size: 58
73880201 CATGAGATTG
* * **
73880211 GCACTAAGTGTGCGGGTTTAAATTGCAT-AGCACTAAGTGTGCAAGTTTGATTATAT-A
1 GCACTAAGTGTGCGAGTTT-GATTATATAAGCACTAAGTGTGCAAGTTTGATTATATAA
* * * *
73880268 GCACTAAGTGTGTGAGTTTGATTATGTAAGCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATATAAGCACTAAGTGTGCAAGTTTGATTATATAA
73880326 GCACTAAGTGTGCGAGTTTGATTATATAA-CACTAAGTGTGC
1 GCACTAAGTGTGCGAGTTTGATTATATAAGCACTAAGTGTGC
73880367 GGACTTACTA
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
56 4 0.05
57 55 0.63
58 28 0.32
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGTTTGATTATATAAGCACTAAGTGTGCAAGTTTGATTATATAA
Found at i:73884442 original size:34 final size:34
Alignment explanation
Indices: 73884371--73884448 Score: 122
Period size: 34 Copynumber: 2.3 Consensus size: 34
73884361 GCATACTGCG
*
73884371 CTGATACTGTTACTGAAATGGGCTAAGGCCCACA
1 CTGATACTGTTACTGAAATGGGCTAAGGCCCAAA
73884405 CTGATACTGTTACTGAAATGGGCTAAGG-CCATAA
1 CTGATACTGTTACTGAAATGGGCTAAGGCCCA-AA
*
73884439 CTGAGACTGT
1 CTGATACTGT
73884449 AAGGGCTTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
33 3 0.07
34 38 0.93
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (34 bp):
CTGATACTGTTACTGAAATGGGCTAAGGCCCAAA
Found at i:73886567 original size:31 final size:31
Alignment explanation
Indices: 73886526--73886589 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
73886516 CCTTTTCATA
*
73886526 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
** *
73886557 TTTCAAATTTCATATTATTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
73886588 TT
1 TT
73886590 ACAGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:73886834 original size:24 final size:24
Alignment explanation
Indices: 73886782--73886947 Score: 214
Period size: 24 Copynumber: 7.0 Consensus size: 24
73886772 GCTTTATCAT
*
73886782 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
73886807 ATAACT-GGGCAAAAAGCCCTTTTT
1 ATAACTGGGGC-ATAAGCCCTTTTA
73886831 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
73886854 ATAACTGGGGCGTAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
* *
73886878 ATAATTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
73886902 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
73886925 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
73886948 TCACTTCCTC
Statistics
Matches: 124, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
23 46 0.37
24 64 0.52
25 14 0.11
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:73886858 original size:47 final size:48
Alignment explanation
Indices: 73886781--73886947 Score: 225
Period size: 47 Copynumber: 3.5 Consensus size: 48
73886771 TGCTTTATCA
* *
73886781 TATAACTGGAGGCCT-AGCCTCTTTTAATAACT-GGGCAAAAAGCCCTTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGC-ATAAGCCCTTTT
*
73886830 TATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCGTAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
* *
73886877 TATAATTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
*
73886924 AATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTT
73886948 TCACTTCCTC
Statistics
Matches: 107, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
47 64 0.60
48 30 0.28
49 13 0.12
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTT
Found at i:73887025 original size:20 final size:20
Alignment explanation
Indices: 73886997--73887063 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
73886987 TTATGAATAC
73886997 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73887017 ATCAAGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73887037 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73887057 ACCATGT
1 ATCATGT
73887064 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73887128 original size:25 final size:25
Alignment explanation
Indices: 73887100--73887147 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73887090 ATACATAAAC
* *
73887100 CCTAGGGATATAATGGTCATTTTTA
1 CCTAGGGACAAAATGGTCATTTTTA
*
73887125 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGACAAAATGGTCATTTT
73887148 CATGTTACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGACAAAATGGTCATTTTTA
Found at i:73894875 original size:31 final size:32
Alignment explanation
Indices: 73894834--73894897 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
73894824 CCTTTTCATA
*
73894834 TTTCATATTTCATAACACTGGGCCGAAG-CTT
1 TTTCAAATTTCATAACACTGGGCCGAAGACTT
**
73894865 TTTCAAATTTCATATTACTGGGCCGAAGACTT
1 TTTCAAATTTCATAACACTGGGCCGAAGACTT
73894897 T
1 T
73894898 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 25 0.86
32 4 0.14
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (32 bp):
TTTCAAATTTCATAACACTGGGCCGAAGACTT
Found at i:73895143 original size:24 final size:24
Alignment explanation
Indices: 73895105--73895232 Score: 163
Period size: 23 Copynumber: 5.4 Consensus size: 24
73895095 CTGAAGGCCT
*
73895105 AGCCTCTTTTAATAACT-GGGCAAAA
1 AGCC-CTTTTAATAACTGGGGC-ATA
*
73895130 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
73895154 AGCCC-TTTAATAACTGAGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
*
73895177 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
73895201 TGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73895224 AGCCCTTTT
1 AGCCCTTTT
73895233 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
23 41 0.46
24 40 0.45
25 8 0.09
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:73895166 original size:47 final size:46
Alignment explanation
Indices: 73895112--73895233 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 46
73895102 CCTAGCCTCT
*
73895112 TTTAATAACTGGGCAAAAAGCCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGC-ATAAGCCCTTTTTATAACTGGGGCATAAGCCC
* * *
73895159 TTTAATAACTGAGGCGTAAGCCCTTTTGATAACTGGGGCATATGCCC
1 TTTAATAACTG-GGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC
73895206 TTTAATAACTGGGGCATAAGCCCTTTTT
1 TTTAATAACT-GGGCATAAGCCCTTTTT
73895234 CACTTCCTCC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
47 63 0.94
48 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (46 bp):
TTTAATAACTGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC
Found at i:73899043 original size:20 final size:20
Alignment explanation
Indices: 73899018--73899064 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
73899008 TGTTACATAC
73899018 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
73899038 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73899058 ACCATGT
1 ATCATGT
73899065 TTATCAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73906715 original size:31 final size:31
Alignment explanation
Indices: 73906674--73906737 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
73906664 CCTTTTCATA
* *
73906674 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
**
73906705 TTTCAAATTTCATATTACTGGGCCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
73906736 TT
1 TT
73906738 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCT
Done.