Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 218 of 345
Found at i:73906983 original size:24 final size:24
Alignment explanation
Indices: 73906945--73907120 Score: 239
Period size: 24 Copynumber: 7.4 Consensus size: 24
73906935 CTGGAGGTTT
* *
73906945 AGCCTCTTTTAATAACTGGGGAAAA
1 AGCC-CTTTTAATAACTGGGGCATA
* *
73906970 AGCCCTTTTTATAACTGGGGCACA
1 AGCCCTTTTAATAACTGGGGCATA
*
73906994 AGCCC-TTTAATAACTGGGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
* *
73907017 AGCCCTTTTGATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
73907041 AGCCCTTTTGATAACTGAGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
73907065 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73907089 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
73907112 AGCCCTTTT
1 AGCCCTTTT
73907121 TCACTTCCTC
Statistics
Matches: 136, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
23 42 0.31
24 90 0.66
25 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:73907007 original size:47 final size:47
Alignment explanation
Indices: 73906952--73907120 Score: 257
Period size: 47 Copynumber: 3.6 Consensus size: 47
73906942 TTTAGCCTCT
* * * *
73906952 TTTAATAACTGGGGAAAAAGCCCTTTTTATAACTGGGGCACAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
* *
73906999 TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
* *
73907046 TTTTGATAACTGAGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
73907094 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
73907121 TCACTTCCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
47 66 0.61
48 43 0.39
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:73907114 original size:95 final size:96
Alignment explanation
Indices: 73906945--73907120 Score: 282
Period size: 95 Copynumber: 1.8 Consensus size: 96
73906935 CTGGAGGTTT
* *
73906945 AGCCTCTTTTAATAACTGGGGAAAAAGCCCTTTTTATAACTGGGGCACAAGCCCTTTAATAACTG
1 AGCCTCTTTTAATAACTGAGGAAAAAGCCCTTTTGATAACTGGGGCACAAGCCCTTTAATAACTG
*
73907010 GGGCGTAAGCCCTTTTGATAACTAGGGCATA
66 GGGCATAAGCCCTTTTGATAACTAGGGCATA
* * * *
73907041 AGCC-CTTTTGATAACTGAGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCCTCTTTTAATAACTGAGGAAAAAGCCCTTTTGATAACTGGGGCACAAGCCCTTTAATAACTG
73907105 GGGCATAAGCCCTTTT
66 GGGCATAAGCCCTTTT
73907121 TCACTTCCTC
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
95 69 0.95
96 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Consensus pattern (96 bp):
AGCCTCTTTTAATAACTGAGGAAAAAGCCCTTTTGATAACTGGGGCACAAGCCCTTTAATAACTG
GGGCATAAGCCCTTTTGATAACTAGGGCATA
Found at i:73907195 original size:20 final size:20
Alignment explanation
Indices: 73907170--73907236 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
73907160 TTATGAATAC
73907170 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
73907190 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73907210 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
73907230 ACCATGT
1 ATCATGT
73907237 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:73907201 original size:11 final size:11
Alignment explanation
Indices: 73907170--73907225 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
73907160 TTATGAATAC
73907170 ATCATGTGCAT
1 ATCATGTGCAT
*
73907181 ATCA--TACAT
1 ATCATGTGCAT
73907190 ATCATGTGCAT
1 ATCATGTGCAT
*
73907201 ATCA--TACAT
1 ATCATGTGCAT
*
73907210 GTCATGTGCAT
1 ATCATGTGCAT
73907221 ATCAT
1 ATCAT
73907226 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:73911493 original size:55 final size:55
Alignment explanation
Indices: 73911409--73911518 Score: 184
Period size: 55 Copynumber: 2.0 Consensus size: 55
73911399 GAGGGCAATG
* *
73911409 TTTGCTTGTCTCGGCTTATTCGAGGATGGTAGTCTATTGGACAAACTTCAAGTTA
1 TTTGCTCGTCTCAGCTTATTCGAGGATGGTAGTCTATTGGACAAACTTCAAGTTA
* *
73911464 TTTGCTCGTCTCAGCTTCTTCGAGGATGGTAGTCTGTTGGACAAACTTCAAGTTA
1 TTTGCTCGTCTCAGCTTATTCGAGGATGGTAGTCTATTGGACAAACTTCAAGTTA
73911519 AACTGAGGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.37
Consensus pattern (55 bp):
TTTGCTCGTCTCAGCTTATTCGAGGATGGTAGTCTATTGGACAAACTTCAAGTTA
Found at i:73919353 original size:39 final size:40
Alignment explanation
Indices: 73919251--73919474 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
73919241 TCGAATGATG
* * *
73919251 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
73919290 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
73919331 TCCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
73919370 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
73919409 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
73919448 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
73919475 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 72 0.45
40 79 0.49
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:73919440 original size:79 final size:80
Alignment explanation
Indices: 73919251--73919481 Score: 290
Period size: 79 Copynumber: 2.9 Consensus size: 80
73919241 TCGAATGATG
* * * * *
73919251 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAGACCCGAAGGCATT
* *
73919315 TGTGCGAGTTACTAAT
65 TGTACGAGTTACTAAA
*
73919331 TCCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCATT
*
73919393 GGTACGAGTTACTAAA
65 TGTACGAGTTACTAAA
* * * *
73919409 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTT
*
73919474 GAACGAGT
66 GTACGAGT
73919482 AGCTATATCC
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
78 35 0.27
79 58 0.44
80 38 0.29
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTACGAGTTACTAAA
Found at i:73919496 original size:79 final size:79
Alignment explanation
Indices: 73919251--73919507 Score: 276
Period size: 79 Copynumber: 3.3 Consensus size: 79
73919241 TCGAATGATG
* * * * *
73919251 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCAT
*
73919314 TTGTGCGAGTTACTAA
64 TTGTACGAGTTACTAA
* *
73919330 TTCCGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCAT
*
73919392 TGGTACGAGTTACTAAA
64 TTGTACGAGTTACT-AA
* *
73919409 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
73919474 GAACGAG-TAGCTATA
66 GTACGAGTTA-CTA-A
* *
73919489 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
73919508 TACGTGATTC
Statistics
Matches: 153, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
78 33 0.22
79 77 0.50
80 43 0.28
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTACGAGTTACTAA
Found at i:73924506 original size:40 final size:40
Alignment explanation
Indices: 73924427--73924603 Score: 243
Period size: 40 Copynumber: 4.5 Consensus size: 40
73924417 CGGATGATAA
* *
73924427 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
73924467 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
73924507 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
73924547 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
73924587 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
73924604 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.12
40 103 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:73924871 original size:22 final size:22
Alignment explanation
Indices: 73924831--73924872 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
73924821 GAATGTGCAT
*
73924831 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
73924853 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
73924873 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:73930377 original size:47 final size:47
Alignment explanation
Indices: 73930326--73930597 Score: 393
Period size: 47 Copynumber: 5.7 Consensus size: 47
73930316 TTAGGATTCT
* * *
73930326 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
73930373 ATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
*
73930422 ATGTGATGAATTTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
73930469 ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
73930516 ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
73930563 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73930598 TCCCGAAGGG
Statistics
Matches: 205, Mismatches: 17, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 160 0.78
49 44 0.21
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:73930502 original size:143 final size:141
Alignment explanation
Indices: 73930326--73930597 Score: 409
Period size: 143 Copynumber: 1.9 Consensus size: 141
73930316 TTAGGATTCT
*
73930326 ATGTGATGGATGTGAACATGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * *
73930391 TGTATATACATGTGATAAGGCCTAATAGCCGATGTGATGAATTTGAAAGTGTATATATGTGATAA
66 TGTATAT--ATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAA
73930456 GGCCTAATGGCCG
129 GGCCTAATGGCCG
* * *
73930469 ATGTGATGAATGTGAACGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * *
73930534 TGTATATATGTGACAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 TGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAG
73930598 TCCCGAAGGG
Statistics
Matches: 116, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
141 48 0.41
143 68 0.59
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (141 bp):
ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAAGG
CCTAATGGCCG
Found at i:73930766 original size:37 final size:37
Alignment explanation
Indices: 73930716--73930868 Score: 261
Period size: 37 Copynumber: 4.1 Consensus size: 37
73930706 CCGAGCTCTA
73930716 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
73930753 AAGACCCGATGACTACGTGTGGGGATTTCGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
73930790 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
73930827 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
73930864 AAGAC
1 AAGAC
73930869 TTCGTAATAA
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 110 1.00
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:73940496 original size:21 final size:21
Alignment explanation
Indices: 73940470--73940510 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
73940460 TTTCCAATAC
73940470 CAAATCA-TAGTCGAATCATTT
1 CAAATCACTA-TCGAATCATTT
73940491 CAAATCACTATCGAATCATT
1 CAAATCACTATCGAATCATT
73940511 GTCGAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.39, C:0.22, G:0.07, T:0.32
Consensus pattern (21 bp):
CAAATCACTATCGAATCATTT
Found at i:73947226 original size:27 final size:26
Alignment explanation
Indices: 73947170--73947226 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
73947160 CAACCTTAAC
* * *
73947170 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
73947196 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
73947223 CCTA
1 CCTA
73947227 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:73948526 original size:13 final size:13
Alignment explanation
Indices: 73948508--73948537 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
73948498 AAAAACTGAT
73948508 TATAAACCTTAAA
1 TATAAACCTTAAA
73948521 TATAAACCTTAAA
1 TATAAACCTTAAA
73948534 TATA
1 TATA
73948538 TGGTTACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (13 bp):
TATAAACCTTAAA
Found at i:73950804 original size:21 final size:22
Alignment explanation
Indices: 73950778--73950835 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
73950768 TTTCCAATAC
73950778 CAAATCATAGTCGAATCA-TTT
1 CAAATCATAGTCGAATCATTTT
73950799 CAAATCACTA-TCGAATCATTTT
1 CAAATCA-TAGTCGAATCATTTT
*
73950821 CAAATCATGGTCGAA
1 CAAATCATAGTCGAA
73950836 CAAGTTAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 16 0.48
22 17 0.52
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (22 bp):
CAAATCATAGTCGAATCATTTT
Found at i:73952816 original size:28 final size:28
Alignment explanation
Indices: 73952770--73952851 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
73952760 ATGTCGTTGA
** *
73952770 ATACTCAATGCCTCACACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
73952798 ATACTCAATATCTCGCACACTAAGTGCC
1 ATACTCAATATCTCGCACACTAAGTGCC
* * *
73952826 ATACTCGATCTCTTGCACACTAAGTG
1 ATACTCAATATCTCGCACACTAAGTG
73952852 TCGTACATAG
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.30, C:0.32, G:0.12, T:0.26
Consensus pattern (28 bp):
ATACTCAATATCTCGCACACTAAGTGCC
Found at i:73952902 original size:40 final size:40
Alignment explanation
Indices: 73952840--73952934 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 40
73952830 TCGATCTCTT
* * * * *
73952840 GCACACTAAGTGTCGTACATAGCTGAAGTTATCTCAAATC
1 GCACACTAAATGCCATACATAGCCGAAGCTATCTCAAATC
* * * *
73952880 GCACACTAAATGCCATATATAGCCGAAGCTATGTCGAATT
1 GCACACTAAATGCCATACATAGCCGAAGCTATCTCAAATC
*
73952920 GCACATTAAATGCCA
1 GCACACTAAATGCCA
73952935 CAAATAGACG
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 45 1.00
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (40 bp):
GCACACTAAATGCCATACATAGCCGAAGCTATCTCAAATC
Found at i:73962296 original size:27 final size:28
Alignment explanation
Indices: 73962212--73962309 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
73962202 CATGAGATTG
* * * *
73962212 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
73962241 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
73962269 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
73962296 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
73962310 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:73962320 original size:27 final size:27
Alignment explanation
Indices: 73962240--73962322 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
73962230 TAAATTGTAC
* *
73962240 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
73962268 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
73962295 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
73962322 A
1 A
73962323 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:73962323 original size:29 final size:27
Alignment explanation
Indices: 73962212--73962323 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
73962202 CATGAGATTG
** * *
73962212 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
73962241 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
73962269 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
73962296 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
73962324 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:73965168 original size:26 final size:27
Alignment explanation
Indices: 73965114--73965168 Score: 62
Period size: 26 Copynumber: 2.1 Consensus size: 27
73965104 CTATCGCAGA
*
73965114 TTCAAATCTTTTTGATTCATCAAATAT
1 TTCAAATCTTTTTGATTCATCAAAAAT
73965141 TTCAAA-CTTTTGTGA-TCAGT-AAAAAT
1 TTCAAATCTTTT-TGATTCA-TCAAAAAT
73965167 TT
1 TT
73965169 GGCATTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (27 bp):
TTCAAATCTTTTTGATTCATCAAAAAT
Found at i:73970145 original size:31 final size:31
Alignment explanation
Indices: 73970092--73970150 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
73970082 TCCAAAAATC
*
73970092 ACATTATACAAAAATTACATTTTTGCCCCCTA
1 ACATTATACAAAAACTACA-TTTTGCCCCCTA
73970124 ACATT-TAC-AAAACTACGATTTTGCCCC
1 ACATTATACAAAAACTAC-ATTTTGCCCC
73970151 AAGGGTCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 16 0.64
31 4 0.16
32 5 0.20
ACGTcount: A:0.36, C:0.27, G:0.05, T:0.32
Consensus pattern (31 bp):
ACATTATACAAAAACTACATTTTGCCCCCTA
Found at i:73974411 original size:24 final size:24
Alignment explanation
Indices: 73974361--73974421 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
73974351 TATTAGTATT
*
73974361 TAAAAATATATACATAAGATGGTA
1 TAAAAATATATACATAAGATGGCA
* *
73974385 TAAAAATATGTACATGGAGAT-GCA
1 TAAAAATATATACAT-AAGATGGCA
*
73974409 TAAGAACTATATA
1 TAA-AAATATATA
73974422 TAACTAGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 19 0.63
25 11 0.37
ACGTcount: A:0.51, C:0.07, G:0.15, T:0.28
Consensus pattern (24 bp):
TAAAAATATATACATAAGATGGCA
Found at i:73974575 original size:21 final size:23
Alignment explanation
Indices: 73974548--73974660 Score: 94
Period size: 23 Copynumber: 5.1 Consensus size: 23
73974538 ATATATATAA
*
73974548 ATAATAGTATTAGAAATATGCA-
1 ATAATAGTATTAGAAATATACAT
73974570 AT-ATAGTATTAGAAATATACAT
1 ATAATAGTATTAGAAATATACAT
* * *
73974592 ATAATAGTATAAAAAATATATA-
1 ATAATAGTATTAGAAATATACAT
* *
73974614 ACTAATAATATTA-AAATATATAT
1 A-TAATAGTATTAGAAATATACAT
* *
73974637 AATAATA-TATAAAAAATATA-AT
1 -ATAATAGTATTAGAAATATACAT
73974659 AT
1 AT
73974661 TGAAAACATA
Statistics
Matches: 78, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
21 20 0.26
22 20 0.26
23 37 0.47
24 1 0.01
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.35
Consensus pattern (23 bp):
ATAATAGTATTAGAAATATACAT
Found at i:73974633 original size:22 final size:22
Alignment explanation
Indices: 73974540--73974659 Score: 88
Period size: 21 Copynumber: 5.5 Consensus size: 22
73974530 ACACACATAT
*
73974540 ATATATAAATAATAGTAT-TAGAA
1 ATATAT-AATAATAATATATA-AA
** *
73974563 ATATGCAAT-ATAGTAT-TAGAA
1 ATATATAATAATAATATATA-AA
* * *
73974584 ATATACATATAATAGTATAAAAA
1 ATATATA-ATAATAATATATAAA
73974607 ATATATAACTAATAATAT-TAAA
1 ATATATAA-TAATAATATATAAA
73974629 ATATAT-ATAATAATATATAAA
1 ATATATAATAATAATATATAAA
*
73974650 AAATATAATA
1 ATATATAATA
73974660 TTGAAAACAT
Statistics
Matches: 83, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
20 9 0.11
21 28 0.34
22 18 0.22
23 27 0.33
24 1 0.01
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (22 bp):
ATATATAATAATAATATATAAA
Found at i:73974764 original size:3 final size:3
Alignment explanation
Indices: 73974756--73974791 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
73974746 AAATAACGAC
73974756 TAA TAA TAA TAA TAA TAA TAA TAA TAGA -AA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA
73974792 CGAAGTATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 1 0.03
3 29 0.94
4 1 0.03
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:73974903 original size:21 final size:19
Alignment explanation
Indices: 73974856--73974925 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 19
73974846 AAAATAGTAC
*
73974856 TATATATA-AATACATATACA
1 TATATATATAATACA-A-AAA
* *
73974876 TACATATATAATATTTAAAAA
1 TATATATATAATA--CAAAAA
73974897 TATATATACATAATACAAAAA
1 TATATAT--ATAATACAAAAA
73974918 TATATATA
1 TATATATA
73974926 GCGTAGTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
19 1 0.03
20 7 0.17
21 24 0.60
22 1 0.03
23 7 0.17
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (19 bp):
TATATATATAATACAAAAA
Found at i:73976790 original size:88 final size:85
Alignment explanation
Indices: 73976663--73976893 Score: 261
Period size: 88 Copynumber: 2.6 Consensus size: 85
73976653 ACATGAGCAA
* * *
73976663 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTTCCAAACAA-ATT-T
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAACAGAA-ATT-CAAAAAACATTAT
*
73976726 TGAAAATACCTCGGCATGTGACCT-G
63 TGAAAATACCTCAGC--GTG-CCTCG
* * * *
73976751 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAAAAGTATAAATTGAAAAAACATTAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTGAAAA-CAGAAATTCAAAAAACATT-AT
73976816 TGAAAATACCTCAGCGTGCCTCG
63 TGAAAATACCTCAGCGTGCCTCG
* *
73976839 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA-AAACAGAAATTCAAAA
73976894 GATCTCAGCA
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
87 25 0.20
88 81 0.65
89 3 0.02
90 15 0.12
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (85 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAGAAATTCAAAAAACATTATTGA
AAATACCTCAGCGTGCCTCG
Found at i:73977013 original size:75 final size:74
Alignment explanation
Indices: 73976813--73977413 Score: 549
Period size: 75 Copynumber: 7.8 Consensus size: 74
73976803 AAAAAACATT
73976813 AATTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTT
1 AATTGAAAATACCTCAGCGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
73976875 GACGAA-CAGA
65 GAC-AAGCAGA
* * *
73976885 AATTGAAAAGATCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATGAGTTGATTTT
1 AATTGAAAATACCTCAGC--GT--GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
73976949 TTTGACAAGCAGA
62 TTTGACAAGCAGA
* *
73976962 AATTGAAATTACCTCAGCGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTT
1 AATTGAAAATACCTCAGCGTGCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
73977024 GA-AGAACAGA
65 GACA-AGCAGA
** * * * * * *
73977034 AATTGAAAAATAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCTCGCGA
1 AATTG-AAAAT---ACCT---CAG-CGT--GCCTGAG-GCTC-A-ACTCA-----CCTCTCGCAA
*
73977098 TATGAGTTGATTTTTTTGACAAACAGA
48 TATGAGTTGATTTTTTTGACAAGCAGA
* *
73977125 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTT
1 AATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
73977190 GA-AGAGCAGA
65 GACA-AGCAGA
** * *
73977200 AATCAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGTAATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* * *
73977265 TTACCAGCATA
64 TGACAAGCAGA
* * * *
73977276 AATTGGAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCCATATGAGTTGATTTTTTT
1 AATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
*
73977341 GAAAAGCAGA
65 GACAAGCAGA
* * *
73977351 AATTAAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
73977414 GAAAAACATA
Statistics
Matches: 430, Mismatches: 61, Indels: 73
0.76 0.11 0.13
Matches are distributed among these distances:
71 1 0.00
72 32 0.07
73 6 0.01
74 35 0.08
75 185 0.43
76 69 0.16
77 26 0.06
79 2 0.00
80 6 0.01
81 7 0.02
82 10 0.02
83 6 0.01
84 2 0.00
87 2 0.00
88 19 0.04
90 4 0.01
91 17 0.04
92 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (74 bp):
AATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
ACAAGCAGA
Found at i:73977078 original size:163 final size:152
Alignment explanation
Indices: 73976813--73977515 Score: 730
Period size: 163 Copynumber: 4.5 Consensus size: 152
73976803 AAAAAACATT
*
73976813 AATTGAAAATACCTCAGCGTG-CCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-T
1 AATTGAAATTACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAT
** *
73976874 TGACGAACAGAAATTGAAAAGATCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATG
65 TGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATG
73976939 AGTTGATTTTTTTGACAAGCAGA
130 AGTTGATTTTTTTGACAAGCAGA
73976962 AATTGAAATTACCTCAGCGTGT-CTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGA
1 AATTGAAATTACCTCAGCGTGTCCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT--
*
73977026 AGAACAGAAATTGAAAAATAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCT
63 ---------ATTGAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCT
*
73977091 CTCGCGATATGAGTTGATTTTTTTGACAAACAGA
119 CTCGCGATATGAGTTGATTTTTTTGACAAGCAGA
* *
73977125 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTATT
* * ** * * * **
73977190 GAAGAGCAGAAATCAAAAATACCTCAGC--GTG-CCCTGAGGCTCAACTCACCTCTTGTAATATG
66 GAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATG
* * *
73977252 AGTTGATTTTTTTTTACCAGCATA
130 AGTTGA-TTTTTTTGACAAGCAGA
* * * *
73977276 AATTGGAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCGCCATATGAGTTGATTTTTTT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTATT
* * * * *
73977341 GAAAAGCAGAAATTAAAAATACCTCAGCA--TG-CCCTGAGGCTCAACTCACCTCTCGCAATATG
66 GAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCGATATG
* * *
73977403 AGCTGATTTTTGAAAAACATAAATTGAAGAAAACAGA
130 AGTTGA-TTTT--------T---TTG-A-CAAGCAGA
* *
73977440 AATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTT-TT
1 AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTATT
*
73977503 GAAGAACAGAAAT
66 GAAAAACAGAAAT
73977516 AAAACATCAG
Statistics
Matches: 479, Mismatches: 43, Indels: 51
0.84 0.08 0.09
Matches are distributed among these distances:
149 58 0.12
150 33 0.07
151 143 0.30
152 24 0.05
159 1 0.00
162 15 0.03
163 147 0.31
164 58 0.12
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (152 bp):
AATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTATT
GAAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCGATATGA
GTTGATTTTTTTGACAAGCAGA
Found at i:73977312 original size:151 final size:151
Alignment explanation
Indices: 73977075--73977494 Score: 563
Period size: 151 Copynumber: 2.7 Consensus size: 151
73977065 CATGTGAGCC
*
73977075 GAGGCTCAACTCACCTCTCGCGATATGAGTTGA-TTTTTTTGACAAACAGAAATTGAAATTACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAAACAGAAATTGAAATTACCT
*
73977139 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAGAGCAGAAATC
66 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAAGCAGAAATC
*
73977204 AAAAATACCTCAGCGTGCCCT
131 AAAAATACCTCAGCATGCCCT
* * * * * * *
73977225 GAGGCTCAACTCACCTCTTGTAATATGAGTTGATTTTTTTTTACCAGCATAAATTGGAATTACCT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAAACAGAAATTGAAATTACCT
* * * *
73977290 CAGCGTGTCCTGAGGCTTAACTCACCTCTCGCCATATGAGTTGATTTTTTTGAAAAGCAGAAATT
66 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAAGCAGAAATC
73977355 AAAAATACCTCAGCATGCCCT
131 AAAAATACCTCAGCATGCCCT
* *
73977376 GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGAAAAACATAAATTGAAGAAAACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--------T---TTG-A-CAAACAGAA
*
73977441 ATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
53 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
73977495 TAATTTTTGA
Statistics
Matches: 230, Mismatches: 26, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
150 30 0.13
151 141 0.61
159 1 0.00
162 2 0.01
163 1 0.00
164 55 0.24
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (151 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGACAAACAGAAATTGAAATTACCT
CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAAGCAGAAATC
AAAAATACCTCAGCATGCCCT
Found at i:73977437 original size:16 final size:16
Alignment explanation
Indices: 73977416--73977446 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73977406 TGATTTTTGA
*
73977416 AAAACATAAATTGAAG
1 AAAACAGAAATTGAAG
73977432 AAAACAGAAATTGAA
1 AAAACAGAAATTGAA
73977447 ATTACCTCAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.13, T:0.16
Consensus pattern (16 bp):
AAAACAGAAATTGAAG
Found at i:73977501 original size:89 final size:90
Alignment explanation
Indices: 73977341--73977515 Score: 280
Period size: 89 Copynumber: 2.0 Consensus size: 90
73977331 TGATTTTTTT
73977341 GAAAAGCAGAAATTAAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 GAAAAGCAGAAATTAAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
* *
73977406 TGATTTTTGAAAAACATAAATTGAA
66 TAATTTTTGAAAAACAGAAATTGAA
* * * *
73977431 GAAAA-CAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAAGCAGAAATTAAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
73977495 TAATTTTTGAAGAACAGAAAT
66 TAATTTTTGAAAAACAGAAAT
73977516 AAAACATCAG
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
89 73 0.94
90 5 0.06
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.25
Consensus pattern (90 bp):
GAAAAGCAGAAATTAAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGC
TAATTTTTGAAAAACAGAAATTGAA
Found at i:73990218 original size:20 final size:21
Alignment explanation
Indices: 73990165--73990220 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
73990155 ACACATATAT
*
73990165 ATATA-AATAATAGTATTAGAA
1 ATATACAAT-ATAATATTAGAA
*
73990186 ATATGCAATATAATATTAGAA
1 ATATACAATATAATATTAGAA
73990207 ATATAC-ATATAATA
1 ATATACAATATAATA
73990221 GTATAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 8 0.26
21 20 0.65
22 3 0.10
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (21 bp):
ATATACAATATAATATTAGAA
Found at i:73990253 original size:44 final size:45
Alignment explanation
Indices: 73990195--73990281 Score: 124
Period size: 44 Copynumber: 1.9 Consensus size: 45
73990185 AATATGCAAT
*
73990195 ATAATATTAGAAATATACAT-ATAATAGTATAAAAAATATATAACTA
1 ATAATATTA-AAATATACATAATAATA-TATAAAAAAAATATAACTA
*
73990241 ATAATATT-AAATATATATAATAATATATAAAAAAAATATAA
1 ATAATATTAAAATATACATAATAATATATAAAAAAAATATAA
73990282 TATTGAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
44 24 0.63
45 6 0.16
46 8 0.21
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (45 bp):
ATAATATTAAAATATACATAATAATATATAAAAAAAATATAACTA
Found at i:73990254 original size:21 final size:20
Alignment explanation
Indices: 73990195--73990271 Score: 66
Period size: 23 Copynumber: 3.6 Consensus size: 20
73990185 AATATGCAAT
* *
73990195 ATAATATTAGAAATATACAT-
1 ATAATA-TATAAATATATATA
*
73990215 ATAATAGTATAAAAAATATATA
1 ATAATA-TAT-AAATATATATA
73990237 ACTAATAATATTAAATATATATA
1 A-TAAT-ATA-TAAATATATATA
73990260 ATAATATATAAA
1 ATAATATATAAA
73990272 AAAAATATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
20 12 0.26
21 11 0.23
22 5 0.11
23 17 0.36
24 2 0.04
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (20 bp):
ATAATATATAAATATATATA
Found at i:73990279 original size:21 final size:21
Alignment explanation
Indices: 73990205--73990283 Score: 86
Period size: 23 Copynumber: 3.6 Consensus size: 21
73990195 ATAATATTAG
*
73990205 AAATATACATATAATAGTATAAA
1 AAATATATA-ATAATA-TATAAA
*
73990228 AAATATATAACTAATAATATTAA
1 AAATATATAA-TAAT-ATATAAA
*
73990251 ATATATATAATAATATATAAA
1 AAATATATAATAATATATAAA
*
73990272 AAAAATATAATA
1 AAATATATAATA
73990284 TTGAAAACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
21 16 0.33
22 5 0.10
23 26 0.54
24 1 0.02
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (21 bp):
AAATATATAATAATATATAAA
Found at i:73990521 original size:21 final size:19
Alignment explanation
Indices: 73990474--73990543 Score: 52
Period size: 21 Copynumber: 3.4 Consensus size: 19
73990464 AAAATAGTAC
*
73990474 TATATATA-AATACATATACA
1 TATATATATAATACA-A-AAA
* *
73990494 TACATATATAATATTTAAAAA
1 TATATATATAATA--CAAAAA
73990515 TATATATACATAATACAAAAA
1 TATATAT--ATAATACAAAAA
73990536 TATATATA
1 TATATATA
73990544 GCGTAGTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
19 1 0.03
20 7 0.17
21 24 0.60
22 1 0.03
23 7 0.17
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (19 bp):
TATATATATAATACAAAAA
Found at i:73992558 original size:28 final size:30
Alignment explanation
Indices: 73992526--73992607 Score: 93
Period size: 28 Copynumber: 2.9 Consensus size: 30
73992516 ATGTCGTTGA
73992526 ATGCTCAAT-TCCTCGCACACTAAGT-TC-C
1 ATGCTCAATAT-CTCGCACACTAAGTGTCAC
* *
73992554 ATGCTCGATATCTTGCACACTAAGTGTCAC
1 ATGCTCAATATCTCGCACACTAAGTGTCAC
*
73992584 A--CTCAATGTCTCGCACACTAAGTG
1 ATGCTCAATATCTCGCACACTAAGTG
73992608 ACGCACATAG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
28 41 0.89
29 3 0.07
30 2 0.04
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (30 bp):
ATGCTCAATATCTCGCACACTAAGTGTCAC
Found at i:73992638 original size:40 final size:40
Alignment explanation
Indices: 73992594--73992697 Score: 118
Period size: 40 Copynumber: 2.6 Consensus size: 40
73992584 ACTCAATGTC
*
73992594 TCGCACACTAAGTGACGCACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGACACACATAGCCGAAGCTATCTCAAA
* * * * * *
73992634 TCGCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
1 TCGCACACTAAGTGACACACATAGCCGAAGCTATCTCAAA
* * *
73992674 TCGTACACTAAGTGCCACAAATAG
1 TCGCACACTAAGTGACACACATAG
73992698 TCGATTTGTC
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 54 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (40 bp):
TCGCACACTAAGTGACACACATAGCCGAAGCTATCTCAAA
Found at i:73994487 original size:9 final size:9
Alignment explanation
Indices: 73994470--73994528 Score: 64
Period size: 9 Copynumber: 6.4 Consensus size: 9
73994460 ATTTAATTAT
73994470 TTTTTAAAA
1 TTTTTAAAA
*
73994479 TTTTAAAAA
1 TTTTTAAAA
* *
73994488 TATTAAAATA
1 TTTTTAAA-A
* *
73994498 TTTTTATAC
1 TTTTTAAAA
73994507 TTTTTAAAA
1 TTTTTAAAA
73994516 TTTTTAAAA
1 TTTTTAAAA
73994525 TTTT
1 TTTT
73994529 AATTTTAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
9 35 0.85
10 6 0.15
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:73994544 original size:13 final size:14
Alignment explanation
Indices: 73994517--73994545 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73994507 TTTTTAAAAT
73994517 TTTTAAAATTTTAA
1 TTTTAAAATTTTAA
73994531 TTTTAAAA-TTTAA
1 TTTTAAAATTTTAA
73994544 TT
1 TT
73994546 AAATGCTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTAAAATTTTAA
Found at i:73994984 original size:14 final size:14
Alignment explanation
Indices: 73994961--73994990 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73994951 TGCTTTTGAG
73994961 AAGTGATTTTAAAA
1 AAGTGATTTTAAAA
*
73994975 AAGTGCTTTTAAAA
1 AAGTGATTTTAAAA
73994989 AA
1 AA
73994991 CACTTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.03, G:0.13, T:0.33
Consensus pattern (14 bp):
AAGTGATTTTAAAA
Found at i:73996740 original size:29 final size:29
Alignment explanation
Indices: 73996708--73996785 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
73996698 ATTTGACTTA
73996708 AAATT-TAAAATTTAAAAGATAAAAAAATT
1 AAATTCTAAAATTTAAAA-ATAAAAAAATT
* * *
73996737 AAATTACTAAAA-ATAAAAATATAATAATT
1 AAATT-CTAAAATTTAAAAATAAAAAAATT
*
73996766 AAATTCTAAATTTATAAAAA
1 AAATTCTAAAATT-TAAAAA
73996786 AGTACATAGT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
28 5 0.12
29 19 0.47
30 11 0.28
31 5 0.12
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (29 bp):
AAATTCTAAAATTTAAAAATAAAAAAATT
Found at i:73996765 original size:24 final size:24
Alignment explanation
Indices: 73996713--73996766 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
73996703 ACTTAAAATT
73996713 TAAAATT--TAAAAGATAAAAAAA
1 TAAAATTACTAAAAGATAAAAAAA
* *
73996735 TTAAATTACTAAAA-ATAAAAATA
1 TAAAATTACTAAAAGATAAAAAAA
73996758 TAATAATTA
1 TAA-AATTA
73996767 AATTCTAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 6 0.23
23 10 0.38
24 10 0.38
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
TAAAATTACTAAAAGATAAAAAAA
Found at i:73997669 original size:7 final size:7
Alignment explanation
Indices: 73997639--73997663 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
73997629 TTTATTTTTA
73997639 AAAAATG
1 AAAAATG
73997646 AAAAATG
1 AAAAATG
73997653 AAAAATG
1 AAAAATG
73997660 AAAA
1 AAAA
73997664 TGGAAATTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:73998895 original size:31 final size:31
Alignment explanation
Indices: 73998859--73998953 Score: 104
Period size: 31 Copynumber: 3.1 Consensus size: 31
73998849 ACATCCTAGC
* *
73998859 GACTTAAATAAAAACTTTT-TAATAATTCAGT
1 GACTTAAATAAAAA-TTTTAGAATAATTCAAT
*
73998890 GACTTAAATAAAAATTTTAGAATAGTTCAAT
1 GACTTAAATAAAAATTTTAGAATAATTCAAT
* * *
73998921 AACTTAAATGAAAATTATTA-AATAGTTCAAT
1 GACTTAAATAAAAATT-TTAGAATAATTCAAT
73998952 GA
1 GA
73998954 TCATTTTGTA
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
30 4 0.07
31 49 0.88
32 3 0.05
ACGTcount: A:0.48, C:0.07, G:0.08, T:0.36
Consensus pattern (31 bp):
GACTTAAATAAAAATTTTAGAATAATTCAAT
Found at i:74003900 original size:11 final size:11
Alignment explanation
Indices: 74003858--74003900 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
74003848 TCATATCAAT
74003858 TCATTTCTACTC
1 TCATTTC-ACTC
*
74003870 TCATTTCCATTC
1 TCATTT-CACTC
74003882 TCATTTCACTC
1 TCATTTCACTC
*
74003893 TCAATTCA
1 TCATTTCA
74003901 TATTCAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 11 0.41
12 15 0.56
13 1 0.04
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.47
Consensus pattern (11 bp):
TCATTTCACTC
Found at i:74008380 original size:43 final size:43
Alignment explanation
Indices: 74008311--74008478 Score: 250
Period size: 43 Copynumber: 4.0 Consensus size: 43
74008301 GATAAATCCC
* * * *
74008311 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGAGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
74008352 GCAGGCTTAGTACCGGTGATATGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
74008395 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
74008438 GCAGGCTTCGTGCCGATGATGTGTATTCGGGCCTTCGTGCC
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCC
74008479 AGTGATGTGT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
41 14 0.12
42 2 0.02
43 100 0.86
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:74008484 original size:27 final size:27
Alignment explanation
Indices: 74008443--74008505 Score: 110
Period size: 27 Copynumber: 2.3 Consensus size: 27
74008433 GCCTAGCAGG
74008443 CTTCGTGCCGATGATGTGTATTCGGGC
1 CTTCGTGCCGATGATGTGTATTCGGGC
74008470 CTTCGTGCC-AGTGATGTGTATTCGGGC
1 CTTCGTGCCGA-TGATGTGTATTCGGGC
74008497 CTTCGTGCC
1 CTTCGTGCC
74008506 TAGCAGGCGT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 1 0.03
27 34 0.97
ACGTcount: A:0.10, C:0.25, G:0.32, T:0.33
Consensus pattern (27 bp):
CTTCGTGCCGATGATGTGTATTCGGGC
Found at i:74008910 original size:45 final size:42
Alignment explanation
Indices: 74008843--74008950 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
74008833 TTGACTTGAT
* * *
74008843 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGTCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
*
74008888 TATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
74008930 TGATGTCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
74008951 ACAGGCGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:74011500 original size:12 final size:12
Alignment explanation
Indices: 74011483--74011524 Score: 66
Period size: 12 Copynumber: 3.4 Consensus size: 12
74011473 ATACTAAAAC
74011483 ATAATGTAATTT
1 ATAATGTAATTT
74011495 ATAATGTAATTT
1 ATAATGTAATTT
*
74011507 ATAATTTAATTT
1 ATAATGTAATTT
74011519 AATAAT
1 -ATAAT
74011525 AATTACAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 23 0.82
13 5 0.18
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (12 bp):
ATAATGTAATTT
Found at i:74011886 original size:26 final size:27
Alignment explanation
Indices: 74011822--74011886 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 27
74011812 TTTTCTTATA
74011822 TTAGTAT-TT-AA-TTTTTTTTCCATT
1 TTAGTATATTGAATTTTTTTTTCCATT
* *
74011846 TTGGTATATTTAATTTTTTTTTCCATT
1 TTAGTATATTGAATTTTTTTTTCCATT
*
74011873 TTAGTA-CTTGAATT
1 TTAGTATATTGAATT
74011887 ATAGTTCTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 6 0.18
25 2 0.06
26 8 0.24
27 18 0.53
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.63
Consensus pattern (27 bp):
TTAGTATATTGAATTTTTTTTTCCATT
Found at i:74012154 original size:12 final size:11
Alignment explanation
Indices: 74012137--74012193 Score: 59
Period size: 10 Copynumber: 5.4 Consensus size: 11
74012127 TGACCAAACC
74012137 AAAAATATTGTA
1 AAAAATATT-TA
74012149 AAAAATA-TT-
1 AAAAATATTTA
*
74012158 AAAAAT-TGTA
1 AAAAATATTTA
74012168 AGAAAATATTT-
1 A-AAAATATTTA
74012179 AAAAATATTTA
1 AAAAATATTTA
74012190 AAAA
1 AAAA
74012194 TGTAAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
9 7 0.18
10 11 0.29
11 11 0.29
12 9 0.24
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (11 bp):
AAAAATATTTA
Found at i:74012163 original size:21 final size:22
Alignment explanation
Indices: 74012137--74012193 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 22
74012127 TGACCAAACC
74012137 AAAAATATTGTAAAAAATA-TT
1 AAAAATATTGTAAAAAATATTT
74012158 -AAAA-ATTGTAAGAAAATATTT
1 AAAAATATTGTAA-AAAATATTT
74012179 AAAAATATT-TAAAAA
1 AAAAATATTGTAAAAA
74012194 TGTAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
19 7 0.22
20 10 0.31
21 5 0.16
22 7 0.22
23 3 0.09
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (22 bp):
AAAAATATTGTAAAAAATATTT
Found at i:74012185 original size:30 final size:32
Alignment explanation
Indices: 74012137--74012203 Score: 95
Period size: 30 Copynumber: 2.2 Consensus size: 32
74012127 TGACCAAACC
74012137 AAAAATATTGTAAAAAATA-TTAAAAATTGTAA
1 AAAAATATTGTAAAAAATATTTAAAAA-TGTAA
*
74012169 GAAAATATT-T-AAAAATATTTAAAAATGTAA
1 AAAAATATTGTAAAAAATATTTAAAAATGTAA
74012199 AAAAA
1 AAAAA
74012204 ATAAACAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 16 0.50
31 8 0.25
32 8 0.25
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.30
Consensus pattern (32 bp):
AAAAATATTGTAAAAAATATTTAAAAATGTAA
Found at i:74015684 original size:33 final size:33
Alignment explanation
Indices: 74015647--74015712 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
74015637 AAACTATGAG
74015647 TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
1 TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
74015680 TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
1 TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
74015713 GTGGGATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.48
Consensus pattern (33 bp):
TGCTGTAGTTTATTTCAATAAATTAAAGGTTTT
Found at i:74019103 original size:53 final size:53
Alignment explanation
Indices: 74019021--74019126 Score: 158
Period size: 53 Copynumber: 2.0 Consensus size: 53
74019011 TCCTTAAATT
** *
74019021 TTTCCATATGATGTCATAACCCACTAGTTACAGTCTTACACGATATGGTCTTC
1 TTTCCATATGATACCATAACCCACCAGTTACAGTCTTACACGATATGGTCTTC
** *
74019074 TTTCCATATGATACCATAACCCACCAGTTATGGTCTTTCACGATATGGTCTTC
1 TTTCCATATGATACCATAACCCACCAGTTACAGTCTTACACGATATGGTCTTC
74019127 AGTGCCATGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.36
Consensus pattern (53 bp):
TTTCCATATGATACCATAACCCACCAGTTACAGTCTTACACGATATGGTCTTC
Found at i:74020338 original size:68 final size:68
Alignment explanation
Indices: 74020229--74020365 Score: 211
Period size: 68 Copynumber: 2.0 Consensus size: 68
74020219 AGTCTCTCTG
*
74020229 TGTAACATACTAAATTAGGGCCCAGTCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
1 TGTAACATACTAAATTAGGGCCCAATCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
74020294 TAA
66 TAA
* * * * * *
74020297 TGTAATATCCTAAATTAGGGCCTAATCGGAATAGTGGTTTTGTGACCACAAATTTGAGATAGAAA
1 TGTAACATACTAAATTAGGGCCCAATCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
74020362 TAA
66 TAA
74020365 T
1 T
74020366 TATTTTATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (68 bp):
TGTAACATACTAAATTAGGGCCCAATCGGAACAGTGGTTTTGAGACCACAAATCTGAGATAGAAA
TAA
Found at i:74024624 original size:43 final size:43
Alignment explanation
Indices: 74024569--74024651 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
74024559 TGATATATGG
*
74024569 GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATTATGGATACA
1 GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATAATGGATACA
74024612 GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATAATGGAT
1 GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATAATGGAT
74024652 GCGGTACATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (43 bp):
GGCATCCGAGCTCGTTGAGTGGTTTGAGTTCATAATGGATACA
Found at i:74037142 original size:28 final size:27
Alignment explanation
Indices: 74037110--74037164 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
74037100 AAAAATAAAT
*
74037110 AAAATTCAA-TATGTTAATAATTTAAGTG
1 AAAATT-AATTAT-TTAATAATTAAAGTG
*
74037138 AAAATTAATTATTTTATAATTAAAGTG
1 AAAATTAATTATTTAATAATTAAAGTG
74037165 TGAATTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (27 bp):
AAAATTAATTATTTAATAATTAAAGTG
Found at i:74037436 original size:13 final size:15
Alignment explanation
Indices: 74037418--74037451 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
74037408 AATACAAGCC
74037418 AAATAGAAA-AACA-
1 AAATAGAAAGAACAT
74037431 AAATAGAAAGAACAT
1 AAATAGAAAGAACAT
74037446 AAATAG
1 AAATAG
74037452 GTCAAGCCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.47
14 4 0.21
15 6 0.32
ACGTcount: A:0.71, C:0.06, G:0.12, T:0.12
Consensus pattern (15 bp):
AAATAGAAAGAACAT
Found at i:74057763 original size:28 final size:28
Alignment explanation
Indices: 74057731--74057808 Score: 104
Period size: 29 Copynumber: 2.8 Consensus size: 28
74057721 CATACATGCT
*
74057731 TATGGCCCACTAGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCGCATCT-A
*
74057759 TATGGCCCATTAGGCCCAAATCGCATCTA
1 TATGGCCCACTAGGCCC-AATCGCATCTA
*
74057788 TATGGCCCACGAGGCCCAATC
1 TATGGCCCACTAGGCCCAATC
74057809 ACTTTTACAG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 20 0.45
29 23 0.52
30 1 0.02
ACGTcount: A:0.26, C:0.35, G:0.18, T:0.22
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCGCATCTA
Found at i:74061750 original size:43 final size:41
Alignment explanation
Indices: 74061694--74061805 Score: 116
Period size: 43 Copynumber: 2.6 Consensus size: 41
74061684 ATGCCACTAT
* * *
74061694 CCCAAACAGGGTCTTACATGAAATCAATTAACGATGCCAATGT
1 CCCAAACATGGTCTTACATGAAATCAA-T-ACAATGCCAATGC
* * * *
74061737 CCTAGACATGGTCTTACACGTAATCTCAATACAATGCCAATGC
1 CCCAAACATGGTCTTACATG-AA-ATCAATACAATGCCAATGC
*
74061780 CCCAAACATGGTCTTACATGTAATCA
1 CCCAAACATGGTCTTACATGAAATCA
74061806 TCTCGATAAC
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
41 3 0.05
42 1 0.02
43 44 0.80
44 3 0.05
45 4 0.07
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (41 bp):
CCCAAACATGGTCTTACATGAAATCAATACAATGCCAATGC
Found at i:74070878 original size:46 final size:45
Alignment explanation
Indices: 74070828--74070999 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
74070818 TGGTTGAGCA
74070828 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
74070874 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
74070920 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
74070966 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74071000 GGGCGGGTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:74070982 original size:92 final size:92
Alignment explanation
Indices: 74070825--74070994 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
74070815 GGATGGTTGA
* *
74070825 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74070890 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
74070917 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74070982 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74070995 ACTTAGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:74086278 original size:38 final size:38
Alignment explanation
Indices: 74086219--74086384 Score: 164
Period size: 38 Copynumber: 4.3 Consensus size: 38
74086209 GGACTAAGAT
74086219 CCGAAGGCATTTGTGCGAGATACAAGTTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAA--TCCGGGTTAAGTC
*
74086258 CCGAAGGCCTTTG-GCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC--AATCCGGGTTAAGTC
*
74086297 CCGAAGGCATTCGTGCGAGATTA-AATCC-GGTTAAGTC
1 CCGAAGGCATTTGTGCGAGA-TACAATCCGGGTTAAGTC
* * * * *
74086334 CCGAAGGCA-TTGTGTGAGTTACTAAAACC-GGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC--AATCCGGGTTAAGTC
74086372 CCGAAGGCATTTG
1 CCGAAGGCATTTG
74086385 AACGATAGCT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
35 2 0.02
36 7 0.06
37 18 0.17
38 45 0.41
39 27 0.25
40 8 0.07
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (38 bp):
CCGAAGGCATTTGTGCGAGATACAATCCGGGTTAAGTC
Found at i:74086382 original size:75 final size:77
Alignment explanation
Indices: 74086219--74086382 Score: 194
Period size: 75 Copynumber: 2.1 Consensus size: 77
74086209 GGACTAAGAT
* *
74086219 CCGAAGGCATTTGTGCGAGATACAAGTTCCGGGTTAAGCCCGAAGGCCTTTGGCGAGATACTAAA
1 CCGAAGGCATTCGTGCGAGATACAAG-TCCGGGTTAAGCCCGAAGGCATTTGGCGAGATACTAAA
* *
74086284 TCCGGGTTAAGTC
65 ACCGGGCTAAGTC
* *
74086297 CCGAAGGCATTCGTGCGAGATTA-AA-TCC-GGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTA
1 CCGAAGGCATTCGTGCGAGA-TACAAGTCCGGGTTAAG-CCCGAAGGCATTTG-GCGAGATACTA
*
74086358 AAACC-GGCTATGTC
63 AAACCGGGCTAAGTC
74086372 CCGAAGGCATT
1 CCGAAGGCATT
74086383 TGAACGATAG
Statistics
Matches: 76, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
75 28 0.37
76 25 0.33
78 21 0.28
79 2 0.03
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (77 bp):
CCGAAGGCATTCGTGCGAGATACAAGTCCGGGTTAAGCCCGAAGGCATTTGGCGAGATACTAAAA
CCGGGCTAAGTC
Found at i:74099739 original size:15 final size:15
Alignment explanation
Indices: 74099715--74099744 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74099705 TTAAGAATTT
74099715 CTCCCCTTTTATCGA
1 CTCCCCTTTTATCGA
*
74099730 CTCCCTTTTTATCGA
1 CTCCCCTTTTATCGA
74099745 GATATGATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.37, G:0.07, T:0.43
Consensus pattern (15 bp):
CTCCCCTTTTATCGA
Found at i:74100691 original size:30 final size:30
Alignment explanation
Indices: 74100656--74100712 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
74100646 TAAGCACTTT
74100656 CACATGAGCAAACCACACGCCTGTGTGAGA
1 CACATGAGCAAACCACACGCCTGTGTGAGA
* * **
74100686 CACATGGGTAGGCCACACGCCTGTGTG
1 CACATGAGCAAACCACACGCCTGTGTG
74100713 TCATGGTCGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.26, C:0.30, G:0.28, T:0.16
Consensus pattern (30 bp):
CACATGAGCAAACCACACGCCTGTGTGAGA
Found at i:74101927 original size:88 final size:86
Alignment explanation
Indices: 74101774--74101951 Score: 302
Period size: 88 Copynumber: 2.0 Consensus size: 86
74101764 TTTAGTGACC
* *
74101774 ATCAGGTTGTATTCTCGAGGATTCAGTAAGGCTCCACATCTTGGATTTCATTATCACGATTTTCT
1 ATCAGGTTGTATTCTCAAGAATTCAGTAAGGCTCCACATCTTGGATTTCATTATCACGATTTTCT
74101839 TATCATTCTTATTGTTTAATCT
66 TATC-TTCTTATTGTTTAATCT
* *
74101861 ATCACGGTTGTATTCTCAAGAATTTAGTAAGGCTCCACATCTTGGATTTCATTATCACGGTTTTC
1 ATCA-GGTTGTATTCTCAAGAATTCAGTAAGGCTCCACATCTTGGATTTCATTATCACGATTTTC
74101926 TTATCTTCTTATTGTTTAATCT
65 TTATCTTCTTATTGTTTAATCT
74101948 ATCA
1 ATCA
74101952 AACACGGTTC
Statistics
Matches: 86, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
87 25 0.29
88 61 0.71
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.44
Consensus pattern (86 bp):
ATCAGGTTGTATTCTCAAGAATTCAGTAAGGCTCCACATCTTGGATTTCATTATCACGATTTTCT
TATCTTCTTATTGTTTAATCT
Found at i:74104714 original size:25 final size:25
Alignment explanation
Indices: 74104680--74104754 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 25
74104670 CAAGCCCATT
* *
74104680 TTCATAGCTCATGTAAGCATTTTGA
1 TTCACAGCTCATGTAAGCATTCTGA
74104705 TTCACAGCTCATGTGAGCATAGCATTCTGA
1 TTCACAGCTCATGT----A-AGCATTCTGA
*
74104735 TTCACAGCTCATGTGAGCAT
1 TTCACAGCTCATGTAAGCAT
74104755 ACATGTATAG
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
25 18 0.43
29 1 0.02
30 23 0.55
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (25 bp):
TTCACAGCTCATGTAAGCATTCTGA
Found at i:74104736 original size:30 final size:30
Alignment explanation
Indices: 74104695--74104755 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
74104685 AGCTCATGTA
*
74104695 AGCATTTTGATTCACAGCTCATGTGAGCAT
1 AGCATTCTGATTCACAGCTCATGTGAGCAT
74104725 AGCATTCTGATTCACAGCTCATGTGAGCAT
1 AGCATTCTGATTCACAGCTCATGTGAGCAT
74104755 A
1 A
74104756 CATGTATAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (30 bp):
AGCATTCTGATTCACAGCTCATGTGAGCAT
Found at i:74105393 original size:20 final size:20
Alignment explanation
Indices: 74105370--74105407 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
74105360 TAAAGAAAGT
74105370 AAAT-AAAATGGAAAGTAATG
1 AAATGAAAAT-GAAAGTAATG
*
74105390 AAATGCAAATGAAAGTAA
1 AAATGAAAATGAAAGTAA
74105408 GAATATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.61, C:0.03, G:0.18, T:0.18
Consensus pattern (20 bp):
AAATGAAAATGAAAGTAATG
Found at i:74105879 original size:15 final size:16
Alignment explanation
Indices: 74105859--74105888 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74105849 TGGTTCGTTG
74105859 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
74105874 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
74105889 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:74109765 original size:28 final size:27
Alignment explanation
Indices: 74109734--74109786 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
74109724 TTTATCATTT
*
74109734 TATTTTATTAATATAATTTTTTTGAAAG
1 TATTTTATCAATA-AATTTTTTTGAAAG
*
74109762 TATTTTATCAATAATTTTTTTTGAA
1 TATTTTATCAATAAATTTTTTTGAA
74109787 TAATCTCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.34, C:0.02, G:0.06, T:0.58
Consensus pattern (27 bp):
TATTTTATCAATAAATTTTTTTGAAAG
Found at i:74132382 original size:18 final size:18
Alignment explanation
Indices: 74132359--74132394 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
74132349 GAATGCAAAA
74132359 TTGGTAT-AATATAAATTT
1 TTGGTATCAATA-AAATTT
74132377 TTGGTATCAATAAAATTT
1 TTGGTATCAATAAAATTT
74132395 AATAAGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.39, C:0.03, G:0.11, T:0.47
Consensus pattern (18 bp):
TTGGTATCAATAAAATTT
Found at i:74135198 original size:72 final size:72
Alignment explanation
Indices: 74135081--74135269 Score: 229
Period size: 72 Copynumber: 2.6 Consensus size: 72
74135071 AATGCCCGCA
* * * * * *
74135081 ATTGAGCTACTCACAGGTCTGTACACAAAGTCAGCACCCGAACCCCAAAGCATTATCATG-TAAT
1 ATTGAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCCCAAAGCATTAGCATGAT-AT
*
74135145 GTTCGCTC
65 GCTCGCTC
74135153 ATTGAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCCCAAAGCATTAGCATGATATG
1 ATTGAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCCCAAAGCATTAGCATGATATG
74135218 CTCGCTC
66 CTCGCTC
** * * * *
74135225 AGCGA-CTTACTCATGGATTTATACATAAAGTCAGTACCCAGACCC
1 ATTGAGC-TACTCACGGGTTTATACACAAAGTCAGTACCCGGACCC
74135270 ACTTACATAT
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
71 1 0.01
72 100 0.98
73 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (72 bp):
ATTGAGCTACTCACGGGTTTATACACAAAGTCAGTACCCGGACCCCAAAGCATTAGCATGATATG
CTCGCTC
Found at i:74138748 original size:150 final size:150
Alignment explanation
Indices: 74138477--74138781 Score: 592
Period size: 150 Copynumber: 2.0 Consensus size: 150
74138467 CTGCAGGTAT
*
74138477 CTTAAAAGTCCTATGCGTATCAATGCTTTGAAAATAAGTATCGATATTTTTCAGAAAGTATCAAT
1 CTTAAAAGTCCTATGAGTATCAATGCTTTGAAAATAAGTATCGATATTTTTCAGAAAGTATCAAT
74138542 AAAATGGTATCAGTATTGATACCAAATGCTGAAACTATTTTTTGAAGTGCAAACAAAAATTCCCA
66 AAAATGGTATCAGTATTGATACCAAATGCTGAAACTATTTTTTGAAGTGCAAACAAAAATTCCCA
74138607 ACATGAATTTTATGTTTTAA
131 ACATGAATTTTATGTTTTAA
*
74138627 CTTAAAAGTCCTATGAGTATCAATGCTTTGAAAATAAGTATTGATATTTTTCAGAAAGTATCAAT
1 CTTAAAAGTCCTATGAGTATCAATGCTTTGAAAATAAGTATCGATATTTTTCAGAAAGTATCAAT
74138692 AAAATGGTATCAGTATTGATACCAAATGCTGAAACTATTTTTTGAAGTGCAAACAAAAATTCCCA
66 AAAATGGTATCAGTATTGATACCAAATGCTGAAACTATTTTTTGAAGTGCAAACAAAAATTCCCA
74138757 ACATGAATTTTATGTTTTAA
131 ACATGAATTTTATGTTTTAA
74138777 CTTAA
1 CTTAA
74138782 CAACAATTCC
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 153 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (150 bp):
CTTAAAAGTCCTATGAGTATCAATGCTTTGAAAATAAGTATCGATATTTTTCAGAAAGTATCAAT
AAAATGGTATCAGTATTGATACCAAATGCTGAAACTATTTTTTGAAGTGCAAACAAAAATTCCCA
ACATGAATTTTATGTTTTAA
Found at i:74152867 original size:20 final size:18
Alignment explanation
Indices: 74152836--74152897 Score: 88
Period size: 20 Copynumber: 3.3 Consensus size: 18
74152826 GTAGAATGCA
74152836 AATTTTTGGTATTGATAT
1 AATTTTTGGTATTGATAT
74152854 AATTTTACTGGTATTGATAT
1 AATTTT--TGGTATTGATAT
*
74152874 AAATTTTTGGTATTGATAA
1 -AATTTTTGGTATTGATAT
74152893 AATTT
1 AATTT
74152898 AATAGGTATC
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
18 11 0.28
19 11 0.28
20 12 0.30
21 6 0.15
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.52
Consensus pattern (18 bp):
AATTTTTGGTATTGATAT
Found at i:74152886 original size:19 final size:19
Alignment explanation
Indices: 74152835--74152897 Score: 94
Period size: 18 Copynumber: 3.3 Consensus size: 19
74152825 AGTAGAATGC
74152835 AAATTTTTGGTATTGATAT
1 AAATTTTTGGTATTGATAT
74152854 -AATTTTACTGGTATTGATAT
1 AAATTTT--TGGTATTGATAT
74152874 AAATTTTTGGTATTGATA-
1 AAATTTTTGGTATTGATAT
74152892 AAATTT
1 AAATTT
74152898 AATAGGTATC
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
18 12 0.29
19 11 0.27
20 12 0.29
21 6 0.15
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.51
Consensus pattern (19 bp):
AAATTTTTGGTATTGATAT
Found at i:74152913 original size:39 final size:39
Alignment explanation
Indices: 74152835--74152918 Score: 109
Period size: 39 Copynumber: 2.2 Consensus size: 39
74152825 AGTAGAATGC
* * **
74152835 AAATTTTTGGTATTGATATAATTTTACTGGTATTGATAT
1 AAATTTTTGGTATTGATATAAATTTAATGGTATCAATAT
74152874 AAATTTTTGGTATTGATA-AAATTTAATAGGTATCAATAT
1 AAATTTTTGGTATTGATATAAATTTAAT-GGTATCAATAT
74152913 -AATTTT
1 AAATTTT
74152919 CAAGGTATTG
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
38 13 0.32
39 27 0.68
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (39 bp):
AAATTTTTGGTATTGATATAAATTTAATGGTATCAATAT
Found at i:74156939 original size:46 final size:46
Alignment explanation
Indices: 74156886--74157061 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
74156876 TATTTGGGCA
*
74156886 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
74156932 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
74156979 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
74157025 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74157062 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:74157039 original size:93 final size:93
Alignment explanation
Indices: 74156882--74157053 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
74156872 GGGATATTTG
* * *
74156882 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAG
74156947 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
74156975 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAG
74157040 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
74157054 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:74167418 original size:20 final size:20
Alignment explanation
Indices: 74167381--74167419 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
74167371 GAGTTTTTAA
* * *
74167381 ATATATATAGTTTCAAATAT
1 ATATATATACTCTAAAATAT
74167401 ATATATATACTCTAAAATA
1 ATATATATACTCTAAAATA
74167420 GAATTAATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (20 bp):
ATATATATACTCTAAAATAT
Found at i:74168390 original size:19 final size:17
Alignment explanation
Indices: 74168353--74168396 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
74168343 TTATTTTCTT
*
74168353 TAAATAAATTAAAAATA
1 TAAAAAAATTAAAAATA
*
74168370 TAGAAAAAATGTAAAATTA
1 TA-AAAAAAT-TAAAAATA
74168389 TAAAAAAA
1 TAAAAAAA
74168397 AATCCTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 2 0.09
18 12 0.52
19 9 0.39
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (17 bp):
TAAAAAAATTAAAAATA
Found at i:74168397 original size:19 final size:18
Alignment explanation
Indices: 74168358--74168397 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
74168348 TTCTTTAAAT
*
74168358 AAATTAAAAATATAGAAA
1 AAATTAAAAATATAAAAA
*
74168376 AAATGTAAAATTATAAAAA
1 AAAT-TAAAAATATAAAAA
74168395 AAA
1 AAA
74168398 ATCCTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (18 bp):
AAATTAAAAATATAAAAA
Found at i:74169143 original size:21 final size:23
Alignment explanation
Indices: 74169104--74169146 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
74169094 GAAGAAGAAG
74169104 AGGAAAGTATATATATTTAAAAA
1 AGGAAAGTATATATATTTAAAAA
74169127 AGGAAAGTATAT-T-TTTAAAA
1 AGGAAAGTATATATATTTAAAA
74169147 TTTCTAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 7 0.35
22 1 0.05
23 12 0.60
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (23 bp):
AGGAAAGTATATATATTTAAAAA
Found at i:74170555 original size:19 final size:20
Alignment explanation
Indices: 74170527--74170569 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
74170517 ACTCAAATTG
*
74170527 AAAATTTAAATAGAAG-AAA
1 AAAATCTAAATAGAAGCAAA
*
74170546 AAAATCTAAATGGAAGCAAA
1 AAAATCTAAATAGAAGCAAA
74170566 AAAA
1 AAAA
74170570 CTTCTTCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.67, C:0.05, G:0.12, T:0.16
Consensus pattern (20 bp):
AAAATCTAAATAGAAGCAAA
Found at i:74182641 original size:13 final size:13
Alignment explanation
Indices: 74182623--74182698 Score: 91
Period size: 13 Copynumber: 5.9 Consensus size: 13
74182613 AGTTCTTCAT
74182623 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
74182636 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* * *
74182649 TGCTGTGGAAAAT
1 TGCTTTTGAAAAG
*
74182662 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
* *
74182675 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
74182688 TGC-TTTGAAAA
1 TGCTTTTGAAAA
74182699 AATTTAAGTG
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
12 7 0.13
13 46 0.87
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:74183762 original size:28 final size:28
Alignment explanation
Indices: 74183730--74183813 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
74183720 AACTTTGATC
74183730 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
74183758 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
74183780 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
74183808 ACGTGT
1 ACGTGT
74183814 ATCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:74183798 original size:50 final size:49
Alignment explanation
Indices: 74183682--74183857 Score: 219
Period size: 50 Copynumber: 3.5 Consensus size: 49
74183672 TGAGGTCGCA
** * * * *
74183682 TGTGTAGTACTAAGTATAGGCTACTATGCGTACCCA-ATAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATAA--TTGGTCACG
**
74183733 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCACG
* *
74183783 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACG
74183832 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
74183858 TGCATACCAG
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
49 33 0.30
50 48 0.43
51 30 0.27
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACG
Found at i:74187561 original size:46 final size:46
Alignment explanation
Indices: 74187511--74187683 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
74187501 TGGTTGAGCA
*
74187511 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
* * *
74187557 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAA-T--G
*
74187602 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
* *
74187650 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74187684 GGGCGGGTTA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAATG
Found at i:74187667 original size:93 final size:93
Alignment explanation
Indices: 74187508--74187678 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
74187498 GGATGGTTGA
* *
74187508 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74187573 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
74187601 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74187666 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
74187679 ACTTAGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:74190688 original size:15 final size:15
Alignment explanation
Indices: 74190645--74190699 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
74190635 GTATCTTGGG
74190645 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
74190660 -TTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
74190674 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
74190689 TTTCTTTATTC
1 TTTCTTTATTC
74190700 GTTTCCTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
14 16 0.46
15 17 0.49
16 2 0.06
ACGTcount: A:0.13, C:0.16, G:0.11, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:74193139 original size:46 final size:45
Alignment explanation
Indices: 74193089--74193258 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
74193079 TGGTTGAGCA
74193089 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCC-AGTTCACTTATGGATGCGAATG
* * * *
74193135 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCC-AGTTCACTTATGGATGCGAA-T--G
*
74193180 CATCCGAACTCGTTGAGTTGAGT-CAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCAGTTCACTTATGGATGCGAATG
* *
74193226 CCCGAGCTCGTTGAGTTGAGTCCAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCAGTTCACTTA
74193259 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 11, Indels: 21
0.76 0.08 0.16
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 19 0.18
45 19 0.18
46 33 0.32
47 21 0.20
48 3 0.03
49 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCAGTTCACTTATGGATGCGAATG
Found at i:74193243 original size:91 final size:92
Alignment explanation
Indices: 74193086--74193253 Score: 286
Period size: 91 Copynumber: 1.8 Consensus size: 92
74193076 GGATGGTTGA
* *
74193086 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74193151 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCC-AGTTCGTGAAATGTAACTAG
*
74193179 GCATCCGAACTCGTTGAGTTGAGT-C-AGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
74193242 TGAGTCCAGTTC
66 TGAGTCCAGTTC
74193254 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
90 5 0.07
91 42 0.58
92 1 0.01
93 24 0.33
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAGTTCGTGAAATGTAACTAG
Found at i:74195029 original size:46 final size:44
Alignment explanation
Indices: 74194941--74195212 Score: 185
Period size: 46 Copynumber: 5.9 Consensus size: 44
74194931 TCTCGTCCAT
* * * *
74194941 CTGTGTCGATGCCATGTCCCAGACAGGTCTTACACCAACACATGTAA
1 CTGTGCCGATG-CATGTCCCAGACATGTCTTACACTAGCACAT-T-A
*
74194988 CTGTGCCGATGCATGTCCCAGACATGTCTTACACTAGCACA-TC
1 CTGTGCCGATGCATGTCCCAGACATGTCTTACACTAGCACATTA
* * * * * * *
74195031 CCGTAGCTGACGCATGTCCTAGACATGTATGACACTGGCTAACA-T-
1 CTGT-GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACATTA
* *
74195076 CTCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCAC-TTGT
1 CT-G-TGCCGATGCATGTCCCAGACATGTCTTACACTAGCACATT-A
* * * *
74195122 CTCAATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTA
1 CT--GTGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG--CACATTA
* *
74195172 -TGTGGCCAATGCATGTCCCAGACATGTCTTACACTGGCACA
1 CTGT-GCCGATGCATGTCCCAGACATGTCTTACACTAGCACA
74195213 CATATCTCAT
Statistics
Matches: 181, Mismatches: 29, Indels: 33
0.74 0.12 0.14
Matches are distributed among these distances:
43 3 0.02
44 35 0.19
45 1 0.01
46 80 0.44
47 39 0.22
48 18 0.10
49 1 0.01
50 2 0.01
51 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (44 bp):
CTGTGCCGATGCATGTCCCAGACATGTCTTACACTAGCACATTA
Found at i:74195148 original size:47 final size:46
Alignment explanation
Indices: 74195081--74195211 Score: 158
Period size: 47 Copynumber: 2.8 Consensus size: 46
74195071 AACATCTCGA
* * **
74195081 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCACTTGTCTCA-AT
1 GGCCAATGCATGTCCCAGACATGTCTTACACTGGCACTCAT-T-ATAT
* *
74195128 -GCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTATGT
1 GGCCAATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATTATAT
74195175 GGCCAATGCATGTCCCAGACATGTCTTACACTGGCAC
1 GGCCAATGCATGTCCCAGACATGTCTTACACTGGCAC
74195212 ACATATCTCA
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
46 21 0.29
47 30 0.41
48 22 0.30
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
GGCCAATGCATGTCCCAGACATGTCTTACACTGGCACTCATTATAT
Found at i:74207140 original size:48 final size:48
Alignment explanation
Indices: 74207084--74207662 Score: 941
Period size: 48 Copynumber: 12.0 Consensus size: 48
74207074 CAAGAAAAAT
*
74207084 ATATGTATATGTGGTAAAGCCGTATGGCTAAG-GTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCT-AGTGTGAAATATGTATGAG
*
74207132 ATATGTATATGTGGTAAAGCCGAATGGCTAGAGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* **
74207180 ATATGTATATATGTGGTAAAG-CGTATGGCTAAG-GTGAAATATAAATGAG
1 ATATG--TATATGTGGTAAAGCCGAATGGCT-AGTGTGAAATATGTATGAG
*
74207229 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
74207277 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
74207325 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
74207373 ATATGTATATGTGGTAAAGCCGAATAGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * * *
74207421 ATATATATATGTGGTAAAGCAGTATGGCTAAG-GTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCT-AGTGTGAAATATGTATGAG
74207469 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
74207517 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
74207565 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* * *
74207613 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
74207661 AT
1 AT
74207663 GTGTGTATAT
Statistics
Matches: 501, Mismatches: 22, Indels: 16
0.93 0.04 0.03
Matches are distributed among these distances:
47 20 0.04
48 436 0.87
49 29 0.06
50 16 0.03
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:74209203 original size:40 final size:40
Alignment explanation
Indices: 74209148--74209473 Score: 474
Period size: 40 Copynumber: 8.2 Consensus size: 40
74209138 GAGAATTGAG
74209148 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
74209188 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
74209228 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
74209268 AGTGATATATCCGGGCTAAGTTCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
74209308 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
74209348 AGTGATATACCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
74209388 AGAGTTATA-CCAAGGTTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCC-GGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
74209428 GGTGTTATATCCGGGCTACGTCCCGAAGAGCAATCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
74209468 GGTGAT
1 AGTGAT
74209474 GTGTATTCGG
Statistics
Matches: 257, Mismatches: 27, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
39 2 0.01
40 253 0.98
41 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:74209685 original size:25 final size:25
Alignment explanation
Indices: 74209635--74209685 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
74209625 TGTGTAACAA
* *
74209635 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
74209660 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
74209685 C
1 C
74209686 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:74213189 original size:48 final size:48
Alignment explanation
Indices: 74213096--74213479 Score: 637
Period size: 48 Copynumber: 8.0 Consensus size: 48
74213086 ACAAGAAAAT
*
74213096 ATATGTATATGTGGTAAAGCCG-ATGGCTAAGGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
74213143 ATATGTATATGTGGTAAAGCCGAATGGCTAAAGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
74213191 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * * *
74213239 ATATATATATGTGGTAAAGCCGTATGGCTAAGGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
74213287 ATATGTATATGTGGTAAAGCCGAATAGCTAGTGTGAAATATGTGTGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
74213335 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
74213383 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
74213431 ATATGTATAT-TGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
74213478 AT
1 AT
74213480 GTGTGTATAT
Statistics
Matches: 317, Mismatches: 19, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
47 59 0.19
48 258 0.81
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:74221043 original size:16 final size:16
Alignment explanation
Indices: 74221019--74221054 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
74221009 TCAACCCACT
*
74221019 TTTTTGACTTTTCAGC
1 TTTTCGACTTTTCAGC
74221035 TTTTCGACTTTTCAGC
1 TTTTCGACTTTTCAGC
74221051 TTTT
1 TTTT
74221055 TAGCCTTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.11, C:0.19, G:0.11, T:0.58
Consensus pattern (16 bp):
TTTTCGACTTTTCAGC
Found at i:74223603 original size:46 final size:46
Alignment explanation
Indices: 74223553--74223725 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
74223543 TGGTTGAGCA
*
74223553 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
74223599 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
74223646 TCTGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
74223692 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
74223726 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:74223709 original size:93 final size:93
Alignment explanation
Indices: 74223550--74223720 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
74223540 GGATGGTTGA
*
74223550 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
74223615 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
74223643 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTC-CGAACTCGTTGAG
74223707 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
74223721 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 71 0.99
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:74223987 original size:19 final size:20
Alignment explanation
Indices: 74223950--74223987 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
74223940 ATAAGGTGGT
74223950 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
74223970 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
74223988 TACCATGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:74231288 original size:19 final size:20
Alignment explanation
Indices: 74231251--74231288 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
74231241 ATAAGGTGGT
74231251 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
74231271 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
74231289 GACCATGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:74235384 original size:19 final size:19
Alignment explanation
Indices: 74235348--74235384 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74235338 CTCACATGTC
* *
74235348 AAAGTGAAAAATTGATTTG
1 AAAGTGAAAAAGTAATTTG
74235367 AAAGTGAAAAAGTAATTT
1 AAAGTGAAAAAGTAATTT
74235385 TTGTGGTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (19 bp):
AAAGTGAAAAAGTAATTTG
Found at i:74236084 original size:12 final size:12
Alignment explanation
Indices: 74236067--74236099 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
74236057 CGGCCCGCCC
74236067 ATATTAATTTTT
1 ATATTAATTTTT
74236079 ATATT-ATTTTT
1 ATATTAATTTTT
74236090 ATA-TAATTTT
1 ATATTAATTTT
74236100 AAAAAATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:74236258 original size:30 final size:30
Alignment explanation
Indices: 74236222--74236284 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
74236212 ACTTAACAAG
*
74236222 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAAAAAAATTAA
*
74236252 CAAATGTCTTTAAAATAATAAAAAAATTAA
1 CAAATGTCTCTAAAATAATAAAAAAATTAA
74236282 CAA
1 CAA
74236285 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.59, C:0.11, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAAAAAAATTAA
Found at i:74238453 original size:21 final size:20
Alignment explanation
Indices: 74238429--74238558 Score: 91
Period size: 21 Copynumber: 6.2 Consensus size: 20
74238419 TTTACTTTTA
*
74238429 GTTTAGCTCTCACGAGCTTCT
1 GTTTAGCTCT-ATGAGCTTCT
* * *
74238450 GTTTAACTCATATGAGTTTCC
1 GTTTAGCTC-TATGAGCTTCT
* *
74238471 GTTAAGCTCTATTGAGTTTCT
1 GTTTAGCTCTA-TGAGCTTCT
* * *
74238492 GTTCAACTCTTATGAGTTTCT
1 GTTTAGCTC-TATGAGCTTCT
* *
74238513 GTTCAGCTCTTCTGAGCTTCT
1 GTTTAGCTC-TATGAGCTTCT
74238534 GTTTTA-CTCTTATGAGCTTCT
1 G-TTTAGCTC-TATGAGCTTCT
74238555 GTTT
1 GTTT
74238559 CAACTTATAT
Statistics
Matches: 91, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
20 5 0.05
21 80 0.88
22 6 0.07
ACGTcount: A:0.16, C:0.21, G:0.17, T:0.46
Consensus pattern (20 bp):
GTTTAGCTCTATGAGCTTCT
Found at i:74238555 original size:42 final size:42
Alignment explanation
Indices: 74238442--74238557 Score: 153
Period size: 42 Copynumber: 2.8 Consensus size: 42
74238432 TAGCTCTCAC
* *
74238442 GAGCTTCTGTTTAACTCATATGAGTTTCCGTTAAGCTCTATT
1 GAGCTTCTGTTTAACTCTTATGAGTTTCTGTTAAGCTCTATT
* * *
74238484 GAGTTTCTGTTCAACTCTTATGAGTTTCTGTTCAGCTCT-TCT
1 GAGCTTCTGTTTAACTCTTATGAGTTTCTGTTAAGCTCTAT-T
* *
74238526 GAGCTTCTGTTTTACTCTTATGAGCTTCTGTT
1 GAGCTTCTGTTTAACTCTTATGAGTTTCTGTT
74238558 TCAACTTATA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 1 0.02
42 63 0.98
ACGTcount: A:0.16, C:0.20, G:0.17, T:0.47
Consensus pattern (42 bp):
GAGCTTCTGTTTAACTCTTATGAGTTTCTGTTAAGCTCTATT
Found at i:74238610 original size:64 final size:63
Alignment explanation
Indices: 74238483--74238611 Score: 147
Period size: 64 Copynumber: 2.0 Consensus size: 63
74238473 TAAGCTCTAT
* * ** *
74238483 TGAGTTTCTGTTCAACTCTTATGAGTTTCTGTTCAGCTCTTCTGAGCTTCTGTTTTACTCTTA
1 TGAGCTTCTGTTCAACTCTTATGAGTTTCAGTTCAGCTCTTCTGAGCTTCTGTTCAACCCTTA
*
74238546 TGAGCTTCTGTTTCAACT-TATATGAGTTTCAGTTCAGCTTTTAC-GAGC-TCATGTTCAACCCT
1 TGAGCTTCTG-TTCAACTCT-TATGAGTTTCAGTTCAGCTCTT-CTGAGCTTC-TGTTCAACCCT
74238608 TA
62 TA
74238610 TG
1 TG
74238612 GGTTTCTATT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
63 12 0.21
64 43 0.77
65 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.16, T:0.45
Consensus pattern (63 bp):
TGAGCTTCTGTTCAACTCTTATGAGTTTCAGTTCAGCTCTTCTGAGCTTCTGTTCAACCCTTA
Found at i:74238627 original size:106 final size:104
Alignment explanation
Indices: 74238442--74238644 Score: 252
Period size: 106 Copynumber: 1.9 Consensus size: 104
74238432 TAGCTCTCAC
* * *
74238442 GAGCTTCTGTTTAACTCATATGAGTTTCCGTTAAGCTCTATTGAGTTTCTGTTCAACTCTTATGA
1 GAGCTTCTGTTTAACTCATATGAGTTTCAGTTAAGCTCTATTGAGTCTCTGTTCAACCCTTATGA
*
74238507 GTTTCTGTTCAGCTCTTC-TGAGCTTCTGTTTTACTCTTAT
66 GTTTCTATTCAGCTC-TCATGAGCTTCT-TTTTACTCTTAT
* *
74238547 GAGCTTCTGTTTCAACTTATATGAGTTTCAGTTCAGCT-T-TTACGAG-CTCATGTTCAACCCTT
1 GAGCTTCTGTTT-AACTCATATGAGTTTCAGTTAAGCTCTATT--GAGTCTC-TGTTCAACCCTT
* *
74238609 ATGGGTTTCTATTTAGCTCTCATGAGCTTCTTTTTA
62 ATGAGTTTCTATTCAGCTCTCATGAGCTTCTTTTTA
74238645 GCCTTCGGGC
Statistics
Matches: 85, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
104 2 0.02
105 22 0.26
106 61 0.72
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (104 bp):
GAGCTTCTGTTTAACTCATATGAGTTTCAGTTAAGCTCTATTGAGTCTCTGTTCAACCCTTATGA
GTTTCTATTCAGCTCTCATGAGCTTCTTTTTACTCTTAT
Found at i:74242603 original size:40 final size:40
Alignment explanation
Indices: 74242559--74242705 Score: 118
Period size: 40 Copynumber: 3.6 Consensus size: 40
74242549 TTTTATCAAA
74242559 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCA-
1 TCACCGGCATTTAGCCTGCTAGG-TTTAAACCCGAATTCAT
*** * ** ** * *
74242599 TCACCGGCACGAAGCCTACTAAACTTTAAGTCTGAACTCAT
1 TCACCGGCATTTAGCCTGCT-AGGTTTAAACCCGAATTCAT
* *
74242640 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCCG-ATATCATT
1 TCACCGGCATTTAGCCTGCTAGGTTTAAA-CCCGAAT-TCA-T
74242682 TCACCGGCATTATAGCCTGCTAGG
1 TCACCGGCATT-TAGCCTGCTAGG
74242706 CCCGAAGCCC
Statistics
Matches: 78, Mismatches: 23, Indels: 9
0.71 0.21 0.08
Matches are distributed among these distances:
40 34 0.44
41 21 0.27
42 12 0.15
43 11 0.14
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (40 bp):
TCACCGGCATTTAGCCTGCTAGGTTTAAACCCGAATTCAT
Found at i:74242714 original size:43 final size:45
Alignment explanation
Indices: 74242638--74242767 Score: 144
Period size: 44 Copynumber: 3.0 Consensus size: 45
74242628 GTCTGAACTC
* *
74242638 ATTCACCGGCATT-TTGCCTGCTAGGCTTAAAGCCCGATATCA-T
1 ATTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATCATT
* *
74242681 -TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATAAT-ATT
1 ATTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGAT-ATCATT
* * *
74242725 ATTCACCAGC-TTAAAGCTTGCTAGGCTCAAAGCCCGAATATCA
1 ATTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCG-ATATCA
74242768 CCATTATAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
42 12 0.17
43 22 0.31
44 27 0.38
45 11 0.15
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.26
Consensus pattern (45 bp):
ATTCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATCATT
Done.