Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 220 of 345
Found at i:74582985 original size:13 final size:13
Alignment explanation
Indices: 74582967--74582997 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
74582957 AGAACATCAA
74582967 AACAATAATTAAG
1 AACAATAATTAAG
74582980 AACAATAATTAAG
1 AACAATAATTAAG
74582993 AACAA
1 AACAA
74582998 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.65, C:0.10, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:74587385 original size:68 final size:68
Alignment explanation
Indices: 74587235--74587392 Score: 169
Period size: 68 Copynumber: 2.3 Consensus size: 68
74587225 CTAGCCAATT
* * *
74587235 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
74587300 TTTA
65 CATA
* * *
74587304 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
74587366 CTACATA
63 C-ACATA
74587373 GTATCTCGTAGCTCTCTTGT
1 -TATCTCGTAGCTCTCTTGT
74587393 ACACATGATG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
68 36 0.48
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:74592813 original size:74 final size:74
Alignment explanation
Indices: 74592724--74592872 Score: 271
Period size: 74 Copynumber: 2.0 Consensus size: 74
74592714 ACATCTTGCC
* *
74592724 CTGCTTCAATTCAAGGAACTCCTTTCATTTTTGATCAATAAATCGCTGACTTATGTATTTCTTTT
1 CTGCTTCAATTCAAGGAACTCCTTCCATTTTTGATCAATAAATCGCTGACTTATGTATTTCTTTC
74592789 TGAATTCTT
66 TGAATTCTT
*
74592798 CTGCTTCAATTCAAGGAACTCCTTCCGTTTTTGATCAATAAATCGCTGACTTATGTATTTCTTTC
1 CTGCTTCAATTCAAGGAACTCCTTCCATTTTTGATCAATAAATCGCTGACTTATGTATTTCTTTC
74592863 TGAATTCTT
66 TGAATTCTT
74592872 C
1 C
74592873 CTGGAAGAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.44
Consensus pattern (74 bp):
CTGCTTCAATTCAAGGAACTCCTTCCATTTTTGATCAATAAATCGCTGACTTATGTATTTCTTTC
TGAATTCTT
Found at i:74596028 original size:28 final size:29
Alignment explanation
Indices: 74595975--74596035 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 29
74595965 ATTCTTATTA
*
74595975 CCCATTAGGCCCAAATCACCTTTATATGG
1 CCCATTAGGCCCAAATCACATTTATATGG
*
74596004 CCCATTAGGCCC-AATCTCATTTATATGG
1 CCCATTAGGCCCAAATCACATTTATATGG
74596032 CCCA
1 CCCA
74596036 GCTGACCCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.26, C:0.33, G:0.13, T:0.28
Consensus pattern (29 bp):
CCCATTAGGCCCAAATCACATTTATATGG
Found at i:74596291 original size:16 final size:16
Alignment explanation
Indices: 74596270--74596312 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
74596260 GTAGCCAAAC
*
74596270 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCAGCA
74596286 TTTCAGCTTTTCAGCA
1 TTTCAGCTTTTCAGCA
*
74596302 TTTCGGCTTTT
1 TTTCAGCTTTT
74596313 GCCGATCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.12, C:0.23, G:0.16, T:0.49
Consensus pattern (16 bp):
TTTCAGCTTTTCAGCA
Found at i:74597401 original size:16 final size:17
Alignment explanation
Indices: 74597380--74597419 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
74597370 ACAAAAAAAG
74597380 TTTGGGATTTC-AGAAT
1 TTTGGGATTTCGAGAAT
* *
74597396 TTTGGGGTTTCGAGATT
1 TTTGGGATTTCGAGAAT
74597413 TTTGGGA
1 TTTGGGA
74597420 GTTACAACTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.17, C:0.05, G:0.33, T:0.45
Consensus pattern (17 bp):
TTTGGGATTTCGAGAAT
Found at i:74600364 original size:29 final size:29
Alignment explanation
Indices: 74600263--74600407 Score: 145
Period size: 28 Copynumber: 5.1 Consensus size: 29
74600253 ACATACATGC
** * *
74600263 ATATGGCCCATTTGGTCC-AATCTCATTT
1 ATATGGCCCATCAGGCCCAAATCACATTT
** *
74600291 ATATGGCCCATCAGGCCCAGTTCATATTT
1 ATATGGCCCATCAGGCCCAAATCACATTT
*
74600320 -TATGGCCCATCAGGCCCAAATCACCTTT
1 ATATGGCCCATCAGGCCCAAATCACATTT
* * * *
74600348 ATATGTCCTATTAGGCCC-AATCTCATTT
1 ATATGGCCCATCAGGCCCAAATCACATTT
*
74600376 ATATGGCCCATCCGGCCCAAATCACA-TT
1 ATATGGCCCATCAGGCCCAAATCACATTT
74600404 ATAT
1 ATAT
74600408 TCATGCTCAC
Statistics
Matches: 93, Mismatches: 21, Indels: 6
0.77 0.17 0.05
Matches are distributed among these distances:
28 67 0.72
29 26 0.28
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.32
Consensus pattern (29 bp):
ATATGGCCCATCAGGCCCAAATCACATTT
Found at i:74600364 original size:57 final size:57
Alignment explanation
Indices: 74600288--74600400 Score: 156
Period size: 57 Copynumber: 2.0 Consensus size: 57
74600278 TCCAATCTCA
* *
74600288 TTTATATGGCCCATCAGGCCCAGT-TCATATTTTATGGCCCATCAGGCCCAAATCACC
1 TTTATATGGCCCATCAGGCCCAATCTCAT-TTATATGGCCCATCAGGCCCAAATCACC
* * * *
74600345 TTTATATGTCCTATTAGGCCCAATCTCATTTATATGGCCCATCCGGCCCAAATCAC
1 TTTATATGGCCCATCAGGCCCAATCTCATTTATATGGCCCATCAGGCCCAAATCAC
74600401 ATTATATTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
57 45 0.92
58 4 0.08
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.30
Consensus pattern (57 bp):
TTTATATGGCCCATCAGGCCCAATCTCATTTATATGGCCCATCAGGCCCAAATCACC
Found at i:74600513 original size:19 final size:19
Alignment explanation
Indices: 74600486--74600522 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74600476 CAGCCCATTA
*
74600486 GGCCCATTTAGCCTATTCC
1 GGCCAATTTAGCCTATTCC
*
74600505 GGCCAATTTGGCCTATTC
1 GGCCAATTTAGCCTATTC
74600523 ACAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.32, G:0.19, T:0.32
Consensus pattern (19 bp):
GGCCAATTTAGCCTATTCC
Found at i:74604828 original size:91 final size:91
Alignment explanation
Indices: 74604664--74604845 Score: 301
Period size: 91 Copynumber: 2.0 Consensus size: 91
74604654 TACATGATAT
* * **
74604664 TCGCAATAGGTTTTAAATATTTATAATTAATCGTTCTTGAAACTAACTATTATCATGACGAAGGC
1 TCGCAATAAGTTTTAAATATTTATAATTAATCATTCTTGAAACTAACTATTATCACAACGAAGGC
*
74604729 AAGTGTACCTATCGAAGAGTAGTATA
66 AAGTGTACCTATCGAACAGTAGTATA
* *
74604755 TCGCGATAAGTTTTAAATATTTATAATTAATCATTCTTGAAACTAACTATTATCACAATGAAGGC
1 TCGCAATAAGTTTTAAATATTTATAATTAATCATTCTTGAAACTAACTATTATCACAACGAAGGC
74604820 AAGTGTACCTATCGAACAGTAGTATA
66 AAGTGTACCTATCGAACAGTAGTATA
74604846 GCTTTAGCAA
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
91 84 1.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (91 bp):
TCGCAATAAGTTTTAAATATTTATAATTAATCATTCTTGAAACTAACTATTATCACAACGAAGGC
AAGTGTACCTATCGAACAGTAGTATA
Found at i:74617376 original size:48 final size:47
Alignment explanation
Indices: 74617298--74617431 Score: 142
Period size: 48 Copynumber: 2.8 Consensus size: 47
74617288 ATGGTGAATT
* * * *
74617298 GCCGATGCCATGTTCCAAACATGGTTTTACACTGGCTCACATGTCGAG
1 GCCGATGCCATG-TCCAGACATGGTCTTACACTGGCTCACATCTCAAG
* * * * *
74617346 GTCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCCATGTCC-AGACATGGTCTTACACTGGCTCACATCTCAAG
**
74617394 GCCGATGGTATGTCCCAGACATGGTCTTACACTGGCTC
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTGGCTC
74617432 TCATTGTGCC
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
47 3 0.04
48 66 0.93
49 2 0.03
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCAGACATGGTCTTACACTGGCTCACATCTCAAG
Found at i:74617474 original size:94 final size:96
Alignment explanation
Indices: 74617297--74617474 Score: 227
Period size: 96 Copynumber: 1.9 Consensus size: 96
74617287 AATGGTGAAT
* * **
74617297 TGCCGATGCCATGTTCCAAACATGGTTTTACACTGGCTCACATGTCGAGGTCGATGCCATGTCCT
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGCCCGATGCCATGTCCT
*
74617362 AGACATGGTCTTACACTAGCTCTCGTCTCAA
66 AGACATGGTCCTACACTAGCTCTCGTCTCAA
** * * * *
74617393 TGCCGATGGTATGTCCCAGACATGGTCTTACACTGGCTCTCAT-T-GTGCCCGGTGCCATGTCCC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGCCCGATGCCATGT-CC
74617456 T-GACATGGTCCTACACTAG
65 TAGACATGGTCCTACACTAG
74617475 AATAGATATC
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
94 29 0.41
95 4 0.06
96 37 0.53
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGCCCGATGCCATGTCCT
AGACATGGTCCTACACTAGCTCTCGTCTCAA
Found at i:74618983 original size:93 final size:92
Alignment explanation
Indices: 74618819--74618988 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 92
74618809 CCCCCTAAGT
74618819 GAACTCGGACTCAACTCAACAAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACAAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
74618884 GAGTTCGGATGCCTAGTTACATTTCAC
66 GAGTTCGGATGCCTAGTTACATTTCAC
* *
74618911 GAACTC-GACTCAACTCAAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTC-AACAAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74618975 ACGAGTTCGGATGC
64 ACGAGTTCGGATGC
74618989 TCAACCATCC
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
91 10 0.14
92 15 0.20
93 49 0.66
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACAAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCAC
Found at i:74619004 original size:46 final size:45
Alignment explanation
Indices: 74618814--74618996 Score: 171
Period size: 45 Copynumber: 4.0 Consensus size: 45
74618804 TAACCCCCCC
* * * *
74618814 TAAGTGAACTCGGACTCAACTCAACAAGCTCGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATGCGCAACCA
74618859 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTTA-CA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATGCGC-A---ACCA
* * * *
74618905 TTTCA-CGAACTC-GACTCAACTCAAACGAGTTCGGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTC-AACGAGTTCGG-CATGCGCAACCA
*
74618952 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATGCGCAACCA
74618996 T
1 T
74618997 CCTAGTGACA
Statistics
Matches: 112, Mismatches: 13, Indels: 27
0.74 0.09 0.18
Matches are distributed among these distances:
43 1 0.01
44 13 0.12
45 33 0.29
46 29 0.26
47 29 0.26
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATGCGCAACCA
Found at i:74623894 original size:21 final size:21
Alignment explanation
Indices: 74623870--74623951 Score: 58
Period size: 21 Copynumber: 3.8 Consensus size: 21
74623860 CTATGAACTA
74623870 TGTGATCTGAATTCATTGAGT
1 TGTGATCTGAATTCATTGAGT
* * *
74623891 TGTGGTCTGATTTCA-TGATAT
1 TGTGATCTGAATTCATTGA-GT
* *
74623912 ATGTGACATTTGAACTCATTGAGT
1 -TGTG--ATCTGAATTCATTGAGT
* *
74623936 TGTGGTCTAAATTCAT
1 TGTGATCTGAATTCAT
74623952 GATGTATGTG
Statistics
Matches: 44, Mismatches: 12, Indels: 10
0.67 0.18 0.15
Matches are distributed among these distances:
20 3 0.07
21 22 0.50
22 4 0.09
23 4 0.09
24 8 0.18
25 3 0.07
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.43
Consensus pattern (21 bp):
TGTGATCTGAATTCATTGAGT
Found at i:74623933 original size:45 final size:45
Alignment explanation
Indices: 74623877--74623962 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
74623867 CTATGTGATC
* * *
74623877 TGAATTCATTGAGTTGTGGTCTGATTTCATGATATATGTGACATT
1 TGAACTCATTGAGTTGTGGTCTAAATTCATGATATATGTGACATT
*
74623922 TGAACTCATTGAGTTGTGGTCTAAATTCATGATGTATGTGA
1 TGAACTCATTGAGTTGTGGTCTAAATTCATGATATATGTGA
74623963 TACATGTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.42
Consensus pattern (45 bp):
TGAACTCATTGAGTTGTGGTCTAAATTCATGATATATGTGACATT
Found at i:74626122 original size:16 final size:16
Alignment explanation
Indices: 74626101--74626133 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74626091 GAAAACAACT
74626101 AAAAAGG-GCTAAATTG
1 AAAAAGGTG-TAAATTG
74626117 AAAAAGGTGTAAATTG
1 AAAAAGGTGTAAATTG
74626133 A
1 A
74626134 GTGATAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.94
17 1 0.06
ACGTcount: A:0.52, C:0.03, G:0.24, T:0.21
Consensus pattern (16 bp):
AAAAAGGTGTAAATTG
Found at i:74626752 original size:42 final size:42
Alignment explanation
Indices: 74626686--74626845 Score: 135
Period size: 42 Copynumber: 3.7 Consensus size: 42
74626676 ATAAGTGATT
*
74626686 TCGTATAAGACCATGT-TTGAGACATGGCATCGATATGAGGTC
1 TCGTATAAGACCATGTCTAG-GACATGGCATCGATATGAGGTC
* * *
74626728 TCGTATAAGACCATGTCTAGGACATGGCATCGGTACCGATTCGAGAC
1 TCGTATAAGACCATGTCTAGGACATGGCATCGATA-TGA---G-GTC
* * * * *
74626775 TTCGTATAAGACCATATCTGGGATATGGCATCGATGTGTAGTTC
1 -TCGTATAAGACCATGTCTAGGACATGGCATCGATATG-AGGTC
* *
74626819 -CTTGTAAGACCATGTCTAGGACATGGC
1 TCGTATAAGACCATGTCTAGGACATGGC
74626846 TTTGGCTCCC
Statistics
Matches: 93, Mismatches: 17, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
42 52 0.56
43 4 0.04
44 1 0.01
45 1 0.01
46 1 0.01
47 3 0.03
48 31 0.33
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (42 bp):
TCGTATAAGACCATGTCTAGGACATGGCATCGATATGAGGTC
Found at i:74628658 original size:68 final size:66
Alignment explanation
Indices: 74628586--74628735 Score: 169
Period size: 67 Copynumber: 2.2 Consensus size: 66
74628576 CATCATGTGT
* * * *
74628586 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATG-T-GTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAAGTTAGGACACCA
74628649 TGTAG
62 TGTAG
** * *
74628654 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTTAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTT-AGGACACCATGT
74628719 AG
65 AG
74628721 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
74628736 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 25 0.36
65 4 0.06
66 2 0.03
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTTAGGACACCATGTA
G
Found at i:74628691 original size:64 final size:64
Alignment explanation
Indices: 74628610--74628793 Score: 212
Period size: 67 Copynumber: 2.8 Consensus size: 64
74628600 AGACATTATG
* * * *
74628610 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
74628674 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTTAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAAG-T--GTACACCATGTAGACAAGAGAGCTACGAGAT
74628739 AA
63 AA
* *
74628741 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAG-ACAAGAGAGC
74628794 CGAACTATAT
Statistics
Matches: 101, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
65 2 0.02
66 21 0.21
67 31 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74636609 original size:34 final size:35
Alignment explanation
Indices: 74636542--74636610 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 35
74636532 ACTGTACTAA
*
74636542 AATGGGCTAAGGCCCCCACAATGTTATTACTACTGT
1 AATGGGCTAAGG-CCCCACAATGATATTACTACTGT
* *
74636578 AATGGGCTAAGG-CCCACACTGATATTGCTACTG
1 AATGGGCTAAGGCCCCACAATGATATTACTACTG
74636611 ATATGGCCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 18 0.60
36 12 0.40
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (35 bp):
AATGGGCTAAGGCCCCACAATGATATTACTACTGT
Found at i:74643847 original size:34 final size:36
Alignment explanation
Indices: 74643757--74643840 Score: 102
Period size: 34 Copynumber: 2.4 Consensus size: 36
74643747 TTATGCATTG
* *
74643757 CTGATATTA-TATTGAAATGGGCTAAGGCCCTCACA
1 CTGATATTACTACTGTAATGGGCTAAGGCCCTCACA
* *
74643792 CTGTTATTACTACTGTAATGGGCTAAGG-TC-CACA
1 CTGATATTACTACTGTAATGGGCTAAGGCCCTCACA
*
74643826 CTGATATTGCTACTG
1 CTGATATTACTACTG
74643841 ATATGGGGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
34 17 0.40
35 9 0.21
36 16 0.38
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (36 bp):
CTGATATTACTACTGTAATGGGCTAAGGCCCTCACA
Found at i:74645048 original size:42 final size:42
Alignment explanation
Indices: 74644937--74645058 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 42
74644927 TACCGTACCA
* * * *
74644937 ATGCCAGATCCCAGATATGGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * * * * **
74644979 ACGACAATAGCCCAGCTATGGTTTTACACAAAATCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
74645022 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
74645059 ATAACCCTAA
Statistics
Matches: 61, Mismatches: 18, Indels: 2
0.75 0.22 0.02
Matches are distributed among these distances:
42 30 0.49
43 31 0.51
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:74646242 original size:6 final size:6
Alignment explanation
Indices: 74646186--74646279 Score: 50
Period size: 6 Copynumber: 15.3 Consensus size: 6
74646176 AAGAAACATT
* * * * *
74646186 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAAA ATTAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * *
74646235 ATCAGA ATCAGA ATCAGT ACCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
74646280 GTGAATGCAA
Statistics
Matches: 65, Mismatches: 15, Indels: 16
0.68 0.16 0.17
Matches are distributed among these distances:
5 4 0.06
6 52 0.80
7 7 0.11
8 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.17, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:74646454 original size:27 final size:26
Alignment explanation
Indices: 74646416--74646517 Score: 141
Period size: 27 Copynumber: 3.8 Consensus size: 26
74646406 GCTCAGTTAT
*
74646416 CAGATATTGTGGCAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
74646443 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
74646469 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
74646497 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
74646518 TTAACAGAAT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
26 7 0.10
27 54 0.78
28 8 0.12
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:74646704 original size:22 final size:22
Alignment explanation
Indices: 74646676--74646740 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
74646666 GCAAATACGT
*
74646676 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
74646698 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
74646720 TTGATACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
74646741 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:74647222 original size:27 final size:27
Alignment explanation
Indices: 74647165--74647494 Score: 383
Period size: 27 Copynumber: 12.3 Consensus size: 27
74647155 GGGGCAAAAT
* * * *
74647165 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
74647191 GGTAATTCCACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
74647218 AGTAATTCTACCCTATAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74647245 GGTAATTCTACCTTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74647272 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
74647299 GATAATTTTACACTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
74647326 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
74647353 GGTAATTCAACCATATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
74647380 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74647407 AGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74647434 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74647461 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74647488 AGTAATT
1 GGTAATT
74647495 TTGTAAATCG
Statistics
Matches: 256, Mismatches: 47, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
26 14 0.05
27 242 0.95
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:74647508 original size:27 final size:27
Alignment explanation
Indices: 74647478--74647576 Score: 101
Period size: 27 Copynumber: 3.7 Consensus size: 27
74647468 CTACCCTACA
74647478 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTGTAAATCG
*** *
74647505 AGGGTAAAAC-GATAATTCTGTAAATCG
1 AGGGTATTTCAG-TAATTTTGTAAATCG
* * **
74647532 AGGGTATTTCAATAATTTTATAGGTCG
1 AGGGTATTTCAGTAATTTTGTAAATCG
*
74647559 AGGGTATTTTAGTAATTT
1 AGGGTATTTCAGTAATTT
74647577 CACAAATCAA
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTGTAAATCG
Found at i:74647591 original size:27 final size:27
Alignment explanation
Indices: 74647559--74647900 Score: 400
Period size: 27 Copynumber: 12.7 Consensus size: 27
74647549 TTATAGGTCG
* * *
74647559 AGGGTATTTTAGTAATTTCACAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
74647586 ATGGTATTTTGGTAATTTTACAAACTA
1 AGGGTATTTTGGTAATTTTACAAACCA
* **
74647613 GGGGTATTTTAATAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
74647640 GGGGTATTTTGGTAATTTTACAAATCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * *
74647667 GGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
74647694 AGGGTATTTTAGTAATTTTACAAA-CT
1 AGGGTATTTTGGTAATTTTACAAACCA
**
74647720 AGAGGTATTTTGGTAATTTTGTAAACCA
1 AG-GGTATTTTGGTAATTTTACAAACCA
*
74647748 ATGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* * * *
74647775 GGGGTATTTTGTTGATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
74647802 AAGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
* *
74647829 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTACAAACCA
**
74647856 AGGGTATTTTACTAATTTTACAAACC-
1 AGGGTATTTTGGTAATTTTACAAACCA
74647882 AGAGGTATTTTGGTAATTT
1 AG-GGTATTTTGGTAATTT
74647901 GGTAAACTAA
Statistics
Matches: 263, Mismatches: 49, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
26 4 0.02
27 257 0.98
28 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAACCA
Found at i:74647907 original size:54 final size:54
Alignment explanation
Indices: 74647560--74647900 Score: 466
Period size: 54 Copynumber: 6.3 Consensus size: 54
74647550 TATAGGTCGA
* * * * * * *
74647560 GGGTATTTTAGTAATTTCACAAATCAATGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * *
74647614 GGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
74647668 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * * *
74647722 AGGTATTTTGGTAATTTTGTAAACCAATGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * *
74647776 GGGTATTTTGTTGATTTTATAAACCAAAGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
*
74647830 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTACTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
*
74647884 AGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
74647901 GGTAAACTAA
Statistics
Matches: 255, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 255 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.41
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:74649912 original size:6 final size:6
Alignment explanation
Indices: 74649867--74649951 Score: 57
Period size: 6 Copynumber: 13.8 Consensus size: 6
74649857 TATCAAAACT
* * * * *
74649867 AGAATC AAAATG AGAATT AGAATT AGAATC AG-GTGAC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* *
74649916 AGAATC AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
74649952 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
5 3 0.05
6 51 0.82
7 6 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.12, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:74649920 original size:31 final size:31
Alignment explanation
Indices: 74649879--74649951 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 31
74649869 AATCAAAATG
* * *
74649879 AGAATTAGAATTAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
74649910 AGAATCAGAATCAGTATCAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGGTAACAGAATC
*
74649941 AAAATCAGAAT
1 AGAATCAGAAT
74649952 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:74650126 original size:27 final size:26
Alignment explanation
Indices: 74650088--74650189 Score: 141
Period size: 27 Copynumber: 3.8 Consensus size: 26
74650078 GCTCAGTTAT
*
74650088 CAGATATTGTGGCAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
74650115 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
74650141 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
74650169 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
74650190 TTAACAGAAT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
26 7 0.10
27 54 0.78
28 8 0.12
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:74650376 original size:22 final size:22
Alignment explanation
Indices: 74650348--74650412 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
74650338 GCAAATACGT
*
74650348 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
*
74650370 TTGGCACAAAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
**
74650392 TTGATACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
74650413 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:74650894 original size:27 final size:27
Alignment explanation
Indices: 74650839--74651167 Score: 385
Period size: 27 Copynumber: 12.2 Consensus size: 27
74650829 GGGCAAAATG
* * * *
74650839 GTAATTTTACCCCACA-AGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74650865 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
74650892 GTAATTTTATCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74650919 GTAATTCTACCCTACAGGGGTATTGC-
1 GTAATTCTACCCTACAGGGGTATTTCA
*
74650945 GATAATTCTACCTTACAGGGGTATTTC-
1 G-TAATTCTACCCTACAGGGGTATTTCA
74650972 GATAATTCTACCCTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTCA
* *
74651000 GTAATTCCACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
74651027 GTAATTTTATCCTATAGGGGTATTTCT
1 GTAATTCTACCCTACAGGGGTATTTCA
74651054 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74651081 GTAATTCTACCCTACAGGGGTATTCCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
74651108 GTTATTCTACCCTACAGGGGTACTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
74651135 GTATTTCTACCCTACAAGGGTGTTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
74651162 GTAATT
1 GTAATT
74651168 TTGTAAATCG
Statistics
Matches: 257, Mismatches: 43, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
26 14 0.05
27 242 0.94
28 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:74651235 original size:27 final size:27
Alignment explanation
Indices: 74651205--74651416 Score: 101
Period size: 27 Copynumber: 7.9 Consensus size: 27
74651195 CTGTAAATCA
*
74651205 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTACTTTAGTAATTTTACAAGTCG
* * *
74651232 AGGGT-CTTTCAATAATTTTATAGGTCG
1 AGGGTACTTT-AGTAATTTTACAAGTCG
* * * *
74651259 AGGGTATTTTAGTAATTTCACAAATCA
1 AGGGTACTTTAGTAATTTTACAAGTCG
* * * * *
74651286 AGGGTATTTTGGTAATTTTATAA-ACTA
1 AGGGTACTTTAGTAATTTTACAAGTC-G
* * * *
74651313 AGGGTATTTTAATAATTTTAC-AGACC
1 AGGGTACTTTAGTAATTTTACAAGTCG
* * *
74651339 AGGGGTATTTTTGTAATTTTACAAATC-
1 A-GGGTACTTTAGTAATTTTACAAGTCG
* * * * * *
74651366 AGGGGTATTTTGGTAACTTTATAA-ACAA
1 A-GGGTACTTTAGTAATTTTACAAGTC-G
*
74651394 AGGGTATTTTAGTAATTTTACAA
1 AGGGTACTTTAGTAATTTTACAA
74651417 AGCAAATGTA
Statistics
Matches: 147, Mismatches: 30, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
26 8 0.05
27 133 0.90
28 6 0.04
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (27 bp):
AGGGTACTTTAGTAATTTTACAAGTCG
Found at i:74651317 original size:81 final size:81
Alignment explanation
Indices: 74651199--74651592 Score: 337
Period size: 81 Copynumber: 4.9 Consensus size: 81
74651189 ATAATTCTGT
* * * * * * * **
74651199 AAATCAAGGGTACTTTGGTAATTTTA-CAAGTCGAGGGTCTTTCAATAATTTTATAGGTC-GAGG
1 AAATCAAGGGTATTTTGGTAATTTTATAAACT-AAGGGTATTTTAATAATTTTACAGACCAG-GG
74651262 GTATTTTAGTAATTTCAC
64 GTATTTTAGTAATTTCAC
74651280 AAATCAAGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAATAATTTTACAGACCAGGGGT
1 AAATCAAGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAATAATTTTACAGACCAGGGGT
* *
74651345 ATTTTTGTAATTTTAC
66 ATTTTAGTAATTTCAC
* * * * * * ***
74651361 AAATCAGGGGTATTTTGGTAACTTTATAAACAAAGGGTATTTTAGTAATTTTACAAAGCAAATGT
1 AAATCAAGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAATAATTTTACAGACCAGGGGT
* ***
74651426 ATTTTGGTAATTTTGT
66 ATTTTAGTAATTTCAC
* * * * ** * * * **
74651442 AAACCAAGTGTATTTTGGTAATTTTACAAAC-CAGTGGTATTTTGGTGATTTTATAAACCAAAGG
1 AAATCAAGGGTATTTTGGTAATTTTATAAACTAAG-GGTATTTTAATAATTTTACAGACCAGGGG
*
74651506 TATTTTAGTAATTTTAC
65 TATTTTAGTAATTTCAC
* * * * * * *
74651523 AAACCAGGGGTATTTT-GTAAATTTTATAAACCAAAGGTATTTTAGTAATTTTACAAACCAAGGG
1 AAATCAAGGGTATTTTGGT-AATTTTATAAACTAAGGGTATTTTAATAATTTTACAGACCAGGGG
74651587 TATTTT
65 TATTTT
74651593 GGTATTTTGG
Statistics
Matches: 262, Mismatches: 46, Indels: 10
0.82 0.14 0.03
Matches are distributed among these distances:
80 4 0.02
81 253 0.97
82 5 0.02
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.40
Consensus pattern (81 bp):
AAATCAAGGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAATAATTTTACAGACCAGGGGT
ATTTTAGTAATTTCAC
Found at i:74651427 original size:27 final size:27
Alignment explanation
Indices: 74651259--74651600 Score: 366
Period size: 27 Copynumber: 12.7 Consensus size: 27
74651249 TTATAGGTCG
* *
74651259 AGGGTATTTTAGTAATTTCACAAATCA
1 AGGGTATTTTAGTAATTTTACAAACCA
* * *
74651286 AGGGTATTTTGGTAATTTTATAAACTA
1 AGGGTATTTTAGTAATTTTACAAACCA
* *
74651313 AGGGTATTTTAATAATTTTACAGACCA
1 AGGGTATTTTAGTAATTTTACAAACCA
* * *
74651340 GGGGTATTTTTGTAATTTTACAAATCA
1 AGGGTATTTTAGTAATTTTACAAACCA
* * * * *
74651367 GGGGTATTTTGGTAACTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACCA
*
74651394 AGGGTATTTTAGTAATTTTACAAAGCA
1 AGGGTATTTTAGTAATTTTACAAACCA
** * **
74651421 AATGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCA
* *
74651448 AGTGTATTTTGGTAATTTTACAAACC-
1 AGGGTATTTTAGTAATTTTACAAACCA
* * *
74651474 AGTGGTATTTTGGTGATTTTATAAACCA
1 AG-GGTATTTTAGTAATTTTACAAACCA
*
74651502 AAGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCA
* *
74651529 GGGGTATTTT-GTAAATTTTATAAACCA
1 AGGGTATTTTAGT-AATTTTACAAACCA
*
74651556 AAGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCA
*
74651583 AGGGTATTTTGGT-ATTTT
1 AGGGTATTTTAGTAATTTT
74651601 GGTAAACTAA
Statistics
Matches: 261, Mismatches: 50, Indels: 9
0.82 0.16 0.03
Matches are distributed among these distances:
26 9 0.03
27 249 0.95
28 3 0.01
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.41
Consensus pattern (27 bp):
AGGGTATTTTAGTAATTTTACAAACCA
Found at i:74653633 original size:25 final size:25
Alignment explanation
Indices: 74653599--74653665 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
74653589 AATCAAAATG
* *
74653599 AGAATTAGAATTAGAATCAGGTGAC
1 AGAATCAGAATTAGAATCAGGTAAC
* *
74653624 AGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATTAGAATCAGGTAAC
*
74653649 AGAATCAAAATTAGAAT
1 AGAATCAGAATTAGAAT
74653666 GTGAATGCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.22
Consensus pattern (25 bp):
AGAATCAGAATTAGAATCAGGTAAC
Found at i:74653841 original size:27 final size:26
Alignment explanation
Indices: 74653802--74653903 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
74653792 GCTCAGTTAT
* *
74653802 CAGATATTGTGGCAGAGTCACCAGATA
1 CAGATATTATGGCAGAGCCACCAGA-A
74653829 CAGATATTATGGCAGAGCCACCAGAA
1 CAGATATTATGGCAGAGCCACCAGAA
* * *
74653855 CAGATATTTGTGGCATAGCCACAAGAAA
1 CAGATA-TTATGGCAGAGCCACCAG-AA
* * *
74653883 CAGATAATGTGGCAAAGCCAC
1 CAGATATTATGGCAGAGCCAC
74653904 TTAACAGAAT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.77
28 8 0.12
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTATGGCAGAGCCACCAGAA
Found at i:74653886 original size:54 final size:53
Alignment explanation
Indices: 74653802--74653903 Score: 132
Period size: 54 Copynumber: 1.9 Consensus size: 53
74653792 GCTCAGTTAT
* * * * *
74653802 CAGATATTGTGGCAGAGTCACCAGATACAGATATTATGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACAAGAAACAGATAATATGGCAAAGCCACCAGAA
* *
74653855 CAGATATTTGTGGCATAGCCACAAGAAACAGATAATGTGGCAAAGCCAC
1 CAGATA-TTGTGGCAGAGCCACAAGAAACAGATAATATGGCAAAGCCAC
74653904 TTAACAGAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 6 0.15
54 35 0.85
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.19
Consensus pattern (53 bp):
CAGATATTGTGGCAGAGCCACAAGAAACAGATAATATGGCAAAGCCACCAGAA
Found at i:74654610 original size:27 final size:27
Alignment explanation
Indices: 74654553--74654882 Score: 439
Period size: 27 Copynumber: 12.3 Consensus size: 27
74654543 GAGGCAAAAT
* * * *
74654553 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74654579 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74654606 AGTAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74654633 GGTAATTCTACCTTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74654660 GATGATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74654687 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
74654714 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
74654741 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
74654768 GATAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
74654795 GATAATTCTACCTTATAGGGGTA-ATC
1 GGTAATTCTACCCTACAGGGGTATTTC
74654821 AGGTAATTCTACCCTACAGGGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
* *
74654849 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
74654876 GGTAATT
1 GGTAATT
74654883 TTGTAAATCG
Statistics
Matches: 266, Mismatches: 35, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 16 0.06
27 248 0.93
28 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:74654896 original size:27 final size:26
Alignment explanation
Indices: 74654866--74654955 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 26
74654856 CTACCCTACA
74654866 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTT-GGTAATTTTGTAAATCG
* * *
74654893 AGGGTAAAATT-GTAATTCTGTAAATCA
1 AGGGT--ATTTGGTAATTTTGTAAATCG
** *
74654920 AGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTA-TTTGGTAATTTTGTAAATCG
74654947 AGGGTATTT
1 AGGGTATTT
74654956 CAATAATTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
25 1 0.02
26 5 0.10
27 41 0.82
29 3 0.06
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (26 bp):
AGGGTATTTGGTAATTTTGTAAATCG
Found at i:74654962 original size:27 final size:28
Alignment explanation
Indices: 74654932--74655145 Score: 140
Period size: 27 Copynumber: 7.9 Consensus size: 28
74654922 GGTACTTTGG
*
74654932 TAATTTTACAAGTCGA-GGGTATTTCAA
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* *
74654959 TAATTTTACAGGTCGA-GGGTATTTTAG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * **
74654986 TAATTTCACAAATC-AGGGGTATTTTGT
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* *
74655013 TAATTTTACAA-ACTAGGGGTATTTTAA
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * **
74655040 TAATTTTACAA-ACCAGGGGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * * **
74655067 TAATTTTACAA-ACCAGGAGTATTTTGG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
* * * * *
74655094 TAATTTTATAA-ACAAAGGGTATTTTAG
1 TAATTTTACAAGTCGAGGGGTATTTTAA
*
74655121 TAATTTTACGAA--CTAGGGGTATTTT
1 TAATTTTAC-AAGTCGAGGGGTATTTT
74655146 GTTAAATTTG
Statistics
Matches: 160, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 156 0.98
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (28 bp):
TAATTTTACAAGTCGAGGGGTATTTTAA
Found at i:74655139 original size:81 final size:81
Alignment explanation
Indices: 74654921--74655316 Score: 456
Period size: 81 Copynumber: 4.9 Consensus size: 81
74654911 TGTAAATCAA
* * * * * ***
74654921 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGGGTATTTT
1 GGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTTAGTAATTTTACAAACCAG-GGGTATTTT
* * *
74654984 AGTAATTTCACAAATCAG
64 GGTAATTTTACAAACCAG
* * *
74655002 GGGTATTTTGTTAATTTTACAAACTAGGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
74655067 TAATTTTACAAACCAG
66 TAATTTTACAAACCAG
* * * * * *
74655083 GAGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACGAACTAGGGGTATTTTGT
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
* ** * *
74655148 TAAATTTGTAAACTAA
66 TAATTTTACAAACCAG
* * * * * *
74655164 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTTGTGATTTTATAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
74655229 TAATTTTACAAACCAG
66 TAATTTTACAAACCAG
*
74655245 GGGTATTTTGGTAATTTT-CTAAACTAAGGGTATTTTAGAAATTTTACAAACCAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTAC-AAACTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTG
74655309 GTAATTTT
65 GTAATTTT
74655317 GGTAAACTAA
Statistics
Matches: 263, Mismatches: 49, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.00
81 258 0.98
82 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGG
TAATTTTACAAACCAG
Found at i:74655161 original size:27 final size:27
Alignment explanation
Indices: 74654975--74655316 Score: 360
Period size: 27 Copynumber: 12.7 Consensus size: 27
74654965 TACAGGTCGA
* * * *
74654975 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
74655002 GGGTATTTTGTTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
** *
74655029 GGGTATTTTAATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
*
74655056 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
74655083 GAGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* ** *
74655110 GGGTATTTTAGTAATTTTACGAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * * * *
74655137 GGGTATTTTGTTAAATTTGTAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
74655164 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
74655191 GGGTATTTTTGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
74655218 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
74655245 GGGTATTTTGGTAATTTTCTAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
74655272 GGGTATTTTAGAAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
74655299 GGGTATTTTGGTAATTTT
1 GGGTATTTTGGTAATTTT
74655317 GGTAAACTAA
Statistics
Matches: 263, Mismatches: 52, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 263 1.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:74655332 original size:54 final size:54
Alignment explanation
Indices: 74654975--74655326 Score: 429
Period size: 54 Copynumber: 6.5 Consensus size: 54
74654965 TACAGGTCGA
* * * * *
74654975 GGGTATTTTAGTAATTTCACAAA-TCAGGGGTATTTT-GTTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACT-AAGGGTATTTTAG-TAATTTTACAAACCAG
** * * * *
74655029 GGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCAG
* * * *
74655083 GAGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACGAACTAG
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCAG
* * * * *
74655137 GGGTATTTTGTTAAATTTGTAAACTAAGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCAG
* * *
74655191 GGGTATTTTTGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCAG
* *
74655245 GGGTATTTTGGTAATTTTCTAAACTAAGGGTATTTTAGAAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCAG
*
74655299 GGGTATTTTGGTAATTTTGGTAAACTAA
1 GGGTATTTTGGTAATTTT-ATAAACTAA
74655327 AGTATTCTTA
Statistics
Matches: 259, Mismatches: 36, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
54 250 0.97
55 9 0.03
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACTAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:74657705 original size:41 final size:40
Alignment explanation
Indices: 74657606--74657752 Score: 116
Period size: 40 Copynumber: 3.6 Consensus size: 40
74657596 CTTTTATCAA
** *
74657606 ATCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTC
1 ATCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAACTC
*** ** *
74657646 ATCACCGGCACGAAGCCTGCTAGACTTTAAGTCTGAACTC
1 ATCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAACTC
* * * *
74657686 ATTCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCG-ACATC
1 A-TCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAAC-TC
*
74657727 ATTTCAACGGCATTATAGCCTGCTAG
1 A--TCACCGGCATT-TAGCCTGCTAG
74657753 GCCCGAAGCC
Statistics
Matches: 84, Mismatches: 19, Indels: 5
0.78 0.18 0.05
Matches are distributed among these distances:
40 34 0.40
41 29 0.35
42 11 0.13
43 10 0.12
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (40 bp):
ATCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAACTC
Found at i:74657965 original size:28 final size:28
Alignment explanation
Indices: 74657927--74658023 Score: 124
Period size: 28 Copynumber: 3.5 Consensus size: 28
74657917 GAATCATTCG
* *
74657927 ATATTTTGCACACGAAGTGTCATTCTCA
1 ATATTTCGCACACAAAGTGTCATTCTCA
*
74657955 ATATCTCGCACACTAAA-TGTCATTCTCA
1 ATATTTCGCACAC-AAAGTGTCATTCTCA
* *
74657983 ATATTTTGTACACAAAGTGTCATTCTCA
1 ATATTTCGCACACAAAGTGTCATTCTCA
*
74658011 ATATTTCGTACAC
1 ATATTTCGCACAC
74658024 TGAGTACCAT
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
27 3 0.05
28 55 0.92
29 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (28 bp):
ATATTTCGCACACAAAGTGTCATTCTCA
Found at i:74667328 original size:40 final size:40
Alignment explanation
Indices: 74667284--74667486 Score: 159
Period size: 40 Copynumber: 5.1 Consensus size: 40
74667274 CGGGATTTAA
* *
74667284 CCGGATATAGCTACTCGCTCGAATGCCTTCAGGACATAGC
1 CCGGATATAGCTACTCGCACGAATGCCTTCGGGACATAGC
* * * *
74667324 CCGGATATAGCAACTTGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGCTACTCGCACGAATGCCTTCGGGACATAGC
* *
74667364 CCGGACATA-ATAACTCGCACGAATGCCTTCGGGA-ATTAGC
1 CCGGATATAGCT-ACTCGCACGAATGCCTTCGGGACA-TAGC
* * * * *
74667404 CCGGGTATA-ATAACTAGCAC-AATTTCCTTCGGG-CTTAGC
1 CCGGATATAGCT-ACTCGCACGAA-TGCCTTCGGGACATAGC
* * *
74667443 CCGGA-ATTAG-TCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGCT-ACTCGCACGAATGCCTTCGGGACATAGC
74667483 CCGG
1 CCGG
74667487 TTATCATCCA
Statistics
Matches: 135, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 30 0.22
40 104 0.77
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGCTACTCGCACGAATGCCTTCGGGACATAGC
Found at i:74667404 original size:80 final size:79
Alignment explanation
Indices: 74667296--74667486 Score: 217
Period size: 80 Copynumber: 2.4 Consensus size: 79
74667286 GGATATAGCT
* * * *
74667296 ACTCGCTCGAATGCCTTCAGGACA-TAGCCCGGATATAGCAACTTGCACCAA-TGCCTTCGGGAC
1 ACTCGCACGAATGCCTTCGGGA-ATTAGCCCGGATATAACAACTAGCA-CAATTGCCTTCGGG-C
74667359 TTAGCCCGGACA-TAATA
63 TTAGCCCGGA-ATTAATA
* * *
74667376 ACTCGCACGAATGCCTTCGGGAATTAGCCCGGGTATAATAACTAGCACAATTTCCTTCGGGCTTA
1 ACTCGCACGAATGCCTTCGGGAATTAGCCCGGATATAACAACTAGCACAATTGCCTTCGGGCTTA
* *
74667441 GCCCGGAATTAGTC
66 GCCCGGAATTAATA
* * *
74667455 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACGAATGCCTTCGGGAATTAGCCCGG
74667487 TTATCATCCA
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 47 0.49
80 48 0.50
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (79 bp):
ACTCGCACGAATGCCTTCGGGAATTAGCCCGGATATAACAACTAGCACAATTGCCTTCGGGCTTA
GCCCGGAATTAATA
Found at i:74667473 original size:79 final size:80
Alignment explanation
Indices: 74667305--74667486 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
74667295 TACTCGCTCG
* * *
74667305 AATGCCTTCAGGACA-TAGCCCGGATATAGCAACTTGCACCAATGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGA-ATTAGCCCGGATATAACAACTAGCACCAATGCCTTCGGGACTTAGCCCGGA
* *
74667369 CATAATAACTCGCACG
65 CATAATAACTAGCACA
* * *
74667385 AATGCCTTCGGGAATTAGCCCGGGTATAATAACTAGCA-CAATTTCCTTCGGG-CTTAGCCCGGA
1 AATGCCTTCGGGAATTAGCCCGGATATAACAACTAGCACCAA-TGCCTTCGGGACTTAGCCCGGA
* *
74667448 -ATTAGTCACTAGCACA
65 CA-TAATAACTAGCACA
*
74667464 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGAATTAGCCCGG
74667487 TTATCATCCA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 47 0.53
80 40 0.45
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
AATGCCTTCGGGAATTAGCCCGGATATAACAACTAGCACCAATGCCTTCGGGACTTAGCCCGGAC
ATAATAACTAGCACA
Found at i:74675485 original size:40 final size:40
Alignment explanation
Indices: 74675378--74675592 Score: 192
Period size: 40 Copynumber: 5.5 Consensus size: 40
74675368 AAGCCAAGTA
* * * * *
74675378 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACCAATG
**
74675417 CCTTCGGGAC--AGCCCGGATATAGCAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAATG
* *
74675455 CCTTCGGGACTTAGCCCGGACATAATAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAATG
* * *
74675495 CCTTCGGGAATTAGCCCGGGTATAATAACTCGCA-CAATTT
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAA-TG
* * * *
74675535 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAATAACTCGCACCAATG
* *
74675574 CTTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
74675593 TTTTCATCCG
Statistics
Matches: 144, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
37 1 0.01
38 31 0.22
39 36 0.25
40 76 0.53
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACCAATG
Found at i:74675591 original size:79 final size:80
Alignment explanation
Indices: 74675427--74675592 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 80
74675417 CCTTCGGGAC
* * *
74675427 AGCCCGGATATAGCAACTCGCACCAATGCCTTCGGGACTTAGCCCGGACATAATAACTCGCACGA
1 AGCCCGGATATAACAACTCGCACCAATGCCTTCGGGACTTAGCCCGGACATAATAACTAGCACAA
*
74675492 ATGCCTTCGGGAATT
66 ATGCCTTCAGGAATT
* * * * *
74675507 AGCCCGGGTATAATAACTCGCA-CAATTTCCTTCGGG-CTTAGCCCGGA-ATTAGTCACTAGCAC
1 AGCCCGGATATAACAACTCGCACCAA-TGCCTTCGGGACTTAGCCCGGACA-TAATAACTAGCAC
* *
74675569 AAATGCTTTCAGGACTT
64 AAATGCCTTCAGGAATT
74675586 AGCCCGG
1 AGCCCGG
74675593 TTTTCATCCG
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 44 0.60
80 28 0.38
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (80 bp):
AGCCCGGATATAACAACTCGCACCAATGCCTTCGGGACTTAGCCCGGACATAATAACTAGCACAA
ATGCCTTCAGGAATT
Found at i:74679662 original size:47 final size:48
Alignment explanation
Indices: 74679595--74679820 Score: 225
Period size: 47 Copynumber: 4.8 Consensus size: 48
74679585 CCACATTATG
* * * ** *
74679595 AGAGCCAATGCAAGACCATGTCTGGGACATGGCATTGGTTTTGAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATA
* *
74679643 AGAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACGT-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGA--TA
* *
74679690 A-AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGG-CTACGAGATG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATA
* * * *
74679735 ATAGTCAGTGTAAGACCATGTCTGGGACATGGCAT-GGACTTGAGATA
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATA
* *
74679782 TGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
74679821 ACCTTACCTA
Statistics
Matches: 149, Mismatches: 20, Indels: 18
0.80 0.11 0.10
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 59 0.40
47 65 0.44
48 21 0.14
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATA
Found at i:74679763 original size:93 final size:94
Alignment explanation
Indices: 74679597--74679820 Score: 240
Period size: 93 Copynumber: 2.4 Consensus size: 94
74679587 ACATTATGAG
* * * * * ** * *
74679597 AGCCAATGCAAGACCATGTCTGGGACATGGCATTGGTTTTGAGATAAGAG-CTAGTGTAAGACAT
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGATGATAGTC-AGTGTAAGACAT
* *
74679661 GTCTAGGACAT-GCATCGGCCTCGAGACGTA
65 GTCTAGGACATGGCAT-GGACTCGAGACATA
* *
74679691 AGCCAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTACGAGATGATAGTCAGTGTAAGACCAT
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGATGATAGTCAGTGTAAGA-CAT
* * * *
74679754 GTCTGGGACATGGCATGGACTTGAGATATG
65 GTCTAGGACATGGCATGGACTCGAGACATA
74679784 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
74679821 ACCTTACCTA
Statistics
Matches: 108, Mismatches: 17, Indels: 9
0.81 0.13 0.07
Matches are distributed among these distances:
92 24 0.22
93 49 0.45
94 27 0.25
95 8 0.07
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGATGATAGTCAGTGTAAGACATG
TCTAGGACATGGCATGGACTCGAGACATA
Found at i:74679811 original size:140 final size:141
Alignment explanation
Indices: 74679559--74679820 Score: 377
Period size: 140 Copynumber: 1.9 Consensus size: 141
74679549 TGAGCTAGTA
*
74679559 TAAGACATGTTTAGGACATGCATCGACCACATTATGAGAGCCAATGCAAGACCATGTCTGGGACA
1 TAAGACATGTTTAGGACATGCATCGACCACATGATGAGAGCCAATGCAAGACCATGTCTGGGACA
** *
74679624 TGGCATTGGTTTTGAGATAAGAGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCGAGAC
66 TGGCATTGGACTTGAGATAAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGAC
74679688 GTAAGCCAGTG
131 GTAAGCCAGTG
* * * * * * *
74679699 TAAGACATGTTTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTGGGAC
1 TAAGACATGTTTAGGACATGCATCGACCAC-ATGATGAGAGCCAATGCAAGACCATGTCTGGGAC
*
74679763 ATGGCA-TGGACTTGAGATATGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
65 ATGGCATTGGACTTGAGATAAGAGCCAGTGTAAGA-CATGTCTAGGACATGGCATCGGC
74679821 ACCTTACCTA
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
139 24 0.22
140 74 0.69
141 9 0.08
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (141 bp):
TAAGACATGTTTAGGACATGCATCGACCACATGATGAGAGCCAATGCAAGACCATGTCTGGGACA
TGGCATTGGACTTGAGATAAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCGAGAC
GTAAGCCAGTG
Found at i:74680431 original size:38 final size:38
Alignment explanation
Indices: 74680388--74680463 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
74680378 ATAGGTAGGT
*
74680388 AAGGGTGGCAATGAGGCTTGGTAAATAGCCTTATATTG
1 AAGGGTGGCAATAAGGCTTGGTAAATAGCCTTATATTG
*
74680426 AAGGGTGGCAATAAGGCTTGGTAAATAGCTTTATATTG
1 AAGGGTGGCAATAAGGCTTGGTAAATAGCCTTATATTG
74680464 TACACACAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.09, G:0.30, T:0.30
Consensus pattern (38 bp):
AAGGGTGGCAATAAGGCTTGGTAAATAGCCTTATATTG
Found at i:74680760 original size:40 final size:40
Alignment explanation
Indices: 74680705--74680792 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
74680695 CCATGTTTTT
**
74680705 GGACACGGTCTAGGACAC-AGGCGTGTCGTGGTTGTGTGAG
1 GGACACGGTCTAGGACACGA-GCGTGTCGTGGCCGTGTGAG
74680745 GGACACAGG-CTAGGACACGAGCGTGTCGTGGCCGTGTGAG
1 GGACAC-GGTCTAGGACACGAGCGTGTCGTGGCCGTGTGAG
74680785 GGACACGG
1 GGACACGG
74680793 GTGTGTGTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
39 2 0.05
40 39 0.89
41 3 0.07
ACGTcount: A:0.19, C:0.20, G:0.43, T:0.17
Consensus pattern (40 bp):
GGACACGGTCTAGGACACGAGCGTGTCGTGGCCGTGTGAG
Found at i:74690231 original size:21 final size:21
Alignment explanation
Indices: 74690207--74690271 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
74690197 AAATCTAACT
74690207 GAAGCACATAAGTGCTAAACG
1 GAAGCACATAAGTGCTAAACG
*
74690228 GAAGC-C-TGAAG-GCT-AACT
1 GAAGCACAT-AAGTGCTAAACG
*
74690246 GAAGCACATAAGTGCTAAATG
1 GAAGCACATAAGTGCTAAACG
74690267 GAAGC
1 GAAGC
74690272 CCGAAGGCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 8 0.22
19 8 0.22
20 8 0.22
21 12 0.33
ACGTcount: A:0.40, C:0.18, G:0.26, T:0.15
Consensus pattern (21 bp):
GAAGCACATAAGTGCTAAACG
Found at i:74690255 original size:39 final size:39
Alignment explanation
Indices: 74690201--74690289 Score: 160
Period size: 39 Copynumber: 2.3 Consensus size: 39
74690191 AACCCGAAAT
*
74690201 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCTGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
*
74690240 CTAACTGAAGCACATAAGTGCTAAATGGAAGCCCGAAGG
1 CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
74690279 CTAACTGAAGC
1 CTAACTGAAGC
74690290 TCATCAGAGC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (39 bp):
CTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAAGG
Found at i:74698953 original size:240 final size:240
Alignment explanation
Indices: 74698530--74699730 Score: 2357
Period size: 240 Copynumber: 5.0 Consensus size: 240
74698520 GTAAAAAGGG
74698530 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
1 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
*
74698595 TCGGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
66 TCAGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
74698660 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
131 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
74698725 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
196 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
74698770 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
1 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
74698835 TCAGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
66 TCAGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
74698900 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
131 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
74698965 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
196 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
74699010 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
1 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
*
74699075 TCAGCACCAACACTCCCCCTTCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
66 TCAGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
74699140 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
131 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
74699205 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
196 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
74699250 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
1 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
74699315 TCAGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
66 TCAGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
74699380 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
131 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
74699445 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
196 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
*
74699490 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTATTGGGAGTCCAAAA
1 TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
74699555 TCAGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
66 TCAGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
* *
74699620 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCTGTCAAACTCTACCACTTACATGGTAAGAGCA
131 AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
74699685 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
196 GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
74699730 T
1 T
74699731 CCTGGCAATA
Statistics
Matches: 955, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
240 955 1.00
ACGTcount: A:0.34, C:0.31, G:0.12, T:0.23
Consensus pattern (240 bp):
TTAGCCACAAAATGGAGAGCACTTGACAATCACAAAGCTGAATTATGAGTGTTGGGAGTCCAAAA
TCAGCACCAACACTCCCCCTCCTTCAGAATTCCTCAATTTCCTCCTAAAACCTCTCCTCAACCAC
AAATTTCAAACTCCACTCCCCCAACAGAGTTTCCGTCAAACTCTACCACTTACATGGTAAGAGTA
GCAAAATAAACACCCTTTGTACACAGCAAGACTCGAACTCAAGTC
Found at i:74705643 original size:41 final size:41
Alignment explanation
Indices: 74705580--74705783 Score: 216
Period size: 41 Copynumber: 5.0 Consensus size: 41
74705570 ATTATTGAAC
* *
74705580 TGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAAT
1 TGCACTTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
** * *
74705621 TGCACTTACGTGCCCCGGTTTGTACTTCGGTACCCCTGAAT
1 TGCACTTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
* *
74705662 TGCACATGA-GTG-GCCTATTTGTACTTTGGTACCCCTAAAT
1 TGCAC-TTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
* * * * ** *
74705702 TGCACATATGTGCCCCTAATTATACTTTATTACCCCTGAAT
1 TGCACTTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
* *
74705743 TGCA-TATACATGCCCCTGTTTGTACTTTGGTACCCCTAAAT
1 TGCACT-TACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
74705784 GTGCTTGGGT
Statistics
Matches: 130, Mismatches: 29, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
39 1 0.01
40 31 0.24
41 96 0.74
42 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (41 bp):
TGCACTTACGTGCCCCTATTTGTACTTTGGTACCCCTAAAT
Found at i:74705736 original size:81 final size:82
Alignment explanation
Indices: 74705575--74705783 Score: 269
Period size: 81 Copynumber: 2.6 Consensus size: 82
74705565 AGAATATTAT
* * **
74705575 TGAACTGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAATTGCACTTACGTGCCCCGGT
1 TGAATTGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAATTGCACATACGTGCCCCGAA
* *
74705640 TTGTACTTCGGTACCCC
66 TTATACTTCAGTACCCC
* * * *
74705657 TGAATTGCACATGA-GTG-GCCTATTTGTACTTTGGTACCCCTAAATTGCACATATGTGCCCCTA
1 TGAATTGCACAT-ACATGCCCCTATTTGTACTTTGGTACCCCTAAATTGCACATACGTGCCCCGA
* *
74705720 ATTATACTTTATTACCCC
65 ATTATACTTCAGTACCCC
* *
74705738 TGAATTGCATATACATGCCCCTGTTTGTACTTTGGTACCCCTAAAT
1 TGAATTGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAAT
74705784 GTGCTTGGGT
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
80 1 0.01
81 67 0.62
82 39 0.36
83 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.34
Consensus pattern (82 bp):
TGAATTGCACATACATGCCCCTATTTGTACTTTGGTACCCCTAAATTGCACATACGTGCCCCGAA
TTATACTTCAGTACCCC
Found at i:74721516 original size:6 final size:6
Alignment explanation
Indices: 74721498--74721585 Score: 74
Period size: 6 Copynumber: 14.3 Consensus size: 6
74721488 AAGAAACATT
* * *
74721498 ATCAGA A-CTAGA ATCAGA ATCAGA ATAAAA ATTAGGTA A-CAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
74721547 ATCAGA ATCAGT ATCAAGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA AT
74721586 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 5 0.07
6 54 0.81
7 5 0.07
8 3 0.04
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:74721542 original size:31 final size:31
Alignment explanation
Indices: 74721507--74721585 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
74721497 TATCAGAACT
* *
74721507 AGAATCAGAATCAGAATAAAAATTAGGTAAC
1 AGAATCAGAATCAGAATAAAAATCAAGTAAC
* **
74721538 AGAATCAGAATCAGAATCAGTATCAAGTAAC
1 AGAATCAGAATCAGAATAAAAATCAAGTAAC
74721569 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
74721586 GTGAATGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATAAAAATCAAGTAAC
Found at i:74721752 original size:27 final size:27
Alignment explanation
Indices: 74721704--74721755 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
74721694 GCGAGGCTGC
*
74721704 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
74721731 CAGATATTGTGGCTAGGCCACCAGA
1 CAGATATTGTGACGAAGCCACCAGA
74721756 AAAAATATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:74722444 original size:27 final size:27
Alignment explanation
Indices: 74722037--74722433 Score: 463
Period size: 27 Copynumber: 14.7 Consensus size: 27
74722027 TAAAATGGTA
* * *
74722037 AATT-TACCCCACAAGGGTATCTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * * *
74722063 AATTCTACCTTACCGGAGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
74722090 AATTCTACCCTACAGGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* *
74722117 ATTTCTACCCTATAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
***
74722144 AATTCTACCCTACAGGGGTATTTTAAT
1 AATTCTACCCTACAGGGGTATTTCGGT
* *
74722171 AATTCTACCCTATAGGGGTATTTTGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
74722198 ATTTCTACCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* *
74722225 ATTTCTATCCTACAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * *
74722252 ATTTCTACCCTACAAGGGTATTTCGAT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * **
74722279 AATTCTACCCTATAAGGGTATTTCAAT
1 AATTCTACCCTACAGGGGTATTTCGGT
* *
74722306 AATTCTATCCTATAGGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * * *
74722333 ATTTCTACCCTATAAGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTCGGT
* * *
74722360 ATTTCTACCTTACAAGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
74722387 AATTCTACCCTACAAGGGTATTTCGGT
1 AATTCTACCCTACAGGGGTATTTCGGT
*
74722414 AATTCTACCCTATAGGGGTA
1 AATTCTACCCTACAGGGGTA
74722434 ATTCAATAAT
Statistics
Matches: 324, Mismatches: 46, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
26 4 0.01
27 320 0.99
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTCGGT
Found at i:74722495 original size:27 final size:27
Alignment explanation
Indices: 74722465--74722742 Score: 245
Period size: 27 Copynumber: 10.3 Consensus size: 27
74722455 AGGGTAAAAC
* * *
74722465 GGTAATTCTATAAATCAAGGGTACTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
* ** * *
74722492 GGTAATTTTACAAGTTGAGGGTACTTC
1 GGTAATTTTACAAATCAAGGGTATTTT
** ** * *
74722519 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCAAGGGTATTTT
* * * *
74722546 AGTAATTTCACAAATTAGGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
*
74722573 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATC-AAGGGTATTTT
* * *
74722600 GATAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
*
74722627 GGTAATTTTACAAA-CCAGGGTTATTTT
1 GGTAATTTTACAAATCAAGGG-TATTTT
* *
74722654 GGTAATTTTATAAATAAAGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
* * *
74722681 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
** *
74722708 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCAAGGGTATTTT
74722735 GGTAATTT
1 GGTAATTT
74722743 GGTAAACTAA
Statistics
Matches: 209, Mismatches: 38, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.02
27 200 0.96
28 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACAAATCAAGGGTATTTT
Found at i:74722537 original size:81 final size:81
Alignment explanation
Indices: 74722429--74722585 Score: 181
Period size: 81 Copynumber: 1.9 Consensus size: 81
74722419 TACCCTATAG
** * *
74722429 GGGTAATTCAATAATTTTGTAAATCGAGGGTAAAACGGTAA-TTCTATAAATCAAGGGTACTTTG
1 GGGTAATTCAATAATTTTACAAATCGAGGGTAAAACAGTAATTTC-ACAAATCAAGGGTACTTTG
74722493 GTAATTTTACAAGTTGA
65 GTAATTTTACAAGTTGA
* ** *** * * *
74722510 GGGTACTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGG
1 GGGTAATTCAATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGG
74722575 TAATTTTACAA
66 TAATTTTACAA
74722586 ACTAGGGGTA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
81 59 0.95
82 3 0.05
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (81 bp):
GGGTAATTCAATAATTTTACAAATCGAGGGTAAAACAGTAATTTCACAAATCAAGGGTACTTTGG
TAATTTTACAAGTTGA
Found at i:74726495 original size:32 final size:32
Alignment explanation
Indices: 74726459--74726523 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
74726449 CCTTTTCATA
74726459 TTTCATATCGCATAACACTAGGCCAAAGCCTT
1 TTTCATATCGCATAACACTAGGCCAAAGCCTT
** ** *
74726491 TTTCATATTTCATATTACTGGGCCAAAGCCTT
1 TTTCATATCGCATAACACTAGGCCAAAGCCTT
74726523 T
1 T
74726524 ACTGCAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (32 bp):
TTTCATATCGCATAACACTAGGCCAAAGCCTT
Found at i:74726792 original size:25 final size:25
Alignment explanation
Indices: 74726732--74726792 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
74726722 CTGGAGGGTT
*
74726732 AGCCTCTTTTAATAACTGGGGCATAA
1 AGCCT-TTTTGATAACTGGGGCATAA
*
74726758 ACCCTTTTTGATAAACTGGGGCAT-A
1 AGCCTTTTTGAT-AACTGGGGCATAA
74726783 AGCCTTTTTG
1 AGCCTTTTTG
74726793 CACTTCCTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 16 0.52
26 15 0.48
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (25 bp):
AGCCTTTTTGATAACTGGGGCATAA
Found at i:74726857 original size:11 final size:11
Alignment explanation
Indices: 74726841--74726887 Score: 71
Period size: 11 Copynumber: 4.5 Consensus size: 11
74726831 TTATGAATAC
74726841 ATCATGTGCAT
1 ATCATGTGCAT
74726852 ATCATGTGCAT
1 ATCATGTGCAT
*
74726863 ATC--GTACAT
1 ATCATGTGCAT
74726872 ATCATGTGCAT
1 ATCATGTGCAT
74726883 ATCAT
1 ATCAT
74726888 ATCAATATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 8 0.25
11 24 0.75
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:74737414 original size:32 final size:32
Alignment explanation
Indices: 74737378--74737442 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
74737368 CCTTTTCATA
*
74737378 TTTCATATTACATAACACTGGGCTGAAGCCTT
1 TTTCATATTACATAACACTGGGCCGAAGCCTT
* ** *
74737410 TTTCATATTTCATATTACTGGGCCGAATCCTT
1 TTTCATATTACATAACACTGGGCCGAAGCCTT
74737442 T
1 T
74737443 ACTACAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.40
Consensus pattern (32 bp):
TTTCATATTACATAACACTGGGCCGAAGCCTT
Found at i:74737679 original size:25 final size:25
Alignment explanation
Indices: 74737651--74737710 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
74737641 CTGGAGGCCT
74737651 AGCCTCTTTTAAT-AACTAGGGCATA
1 AGCC-CTTTTAATAAACTAGGGCATA
** *
74737676 AGCCCTTTTTGGTAAACTGGGGCATA
1 AGCCC-TTTTAATAAACTAGGGCATA
74737702 AGCCCTTTT
1 AGCCCTTTT
74737711 GCACTTCCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 1 0.03
25 13 0.43
26 16 0.53
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTAGGGCATA
Found at i:74737782 original size:9 final size:9
Alignment explanation
Indices: 74737768--74737824 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
74737758 ACATCATGTG
74737768 CATATCATA
1 CATATCATA
*
74737777 CATATCATGTG
1 CATATCA--TA
*
74737788 CATATCGTA
1 CATATCATA
*
74737797 CATATCATGTG
1 CATATCA--TA
74737808 CATATCATA
1 CATATCATA
74737817 CATATCAT
1 CATATCAT
74737825 GTGCATATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:74737785 original size:20 final size:20
Alignment explanation
Indices: 74737760--74737836 Score: 145
Period size: 20 Copynumber: 3.9 Consensus size: 20
74737750 TTATGAATAC
74737760 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74737780 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
74737800 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74737820 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
74737837 TCAATATTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74737791 original size:11 final size:11
Alignment explanation
Indices: 74737760--74737835 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 11
74737750 TTATGAATAC
74737760 ATCATGTGCAT
1 ATCATGTGCAT
*
74737771 ATCA--TACAT
1 ATCATGTGCAT
74737780 ATCATGTGCAT
1 ATCATGTGCAT
*
74737791 ATC--GTACAT
1 ATCATGTGCAT
74737800 ATCATGTGCAT
1 ATCATGTGCAT
*
74737811 ATCA--TACAT
1 ATCATGTGCAT
74737820 ATCATGTGCAT
1 ATCATGTGCAT
74737831 ATCAT
1 ATCAT
74737836 ATCAATATTG
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.45
11 29 0.55
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:74741491 original size:21 final size:21
Alignment explanation
Indices: 74741462--74741537 Score: 64
Period size: 21 Copynumber: 3.5 Consensus size: 21
74741452 CTAGGAATTA
*
74741462 TGTGATCTGAACTCATTGAGT
1 TGTGGTCTGAACTCATTGAGT
**
74741483 TGTGGTCTGAGTTCATT-ATGT
1 TGTGGTCTGAACTCATTGA-GT
* *
74741504 ATGTGGCATCTAAACTCAATGAGT
1 -TGTGG--TCTGAACTCATTGAGT
74741528 TGTGGTCTGA
1 TGTGGTCTGA
74741538 GTTCATGATG
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
20 1 0.02
21 20 0.48
22 5 0.12
23 5 0.12
24 10 0.24
25 1 0.02
ACGTcount: A:0.22, C:0.13, G:0.26, T:0.38
Consensus pattern (21 bp):
TGTGGTCTGAACTCATTGAGT
Found at i:74741527 original size:45 final size:45
Alignment explanation
Indices: 74741466--74741553 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
74741456 GAATTATGTG
* * *
74741466 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATTATGTATGTGGC
1 ATCTAAACTCAATGAGTTGTGGTCTGAGTTCATGATGTATGTGGC
74741511 ATCTAAACTCAATGAGTTGTGGTCTGAGTTCATGATGTATGTG
1 ATCTAAACTCAATGAGTTGTGGTCTGAGTTCATGATGTATGTG
74741554 ACACATGTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.23, C:0.12, G:0.26, T:0.39
Consensus pattern (45 bp):
ATCTAAACTCAATGAGTTGTGGTCTGAGTTCATGATGTATGTGGC
Found at i:74742235 original size:14 final size:15
Alignment explanation
Indices: 74742216--74742250 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
74742206 ATGTTAAGCT
74742216 ATATGAAATT-GGAA
1 ATATGAAATTGGGAA
74742230 ATATG-AATTGGGAA
1 ATATGAAATTGGGAA
74742244 ATATGAA
1 ATATGAA
74742251 TATACATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.21
14 14 0.74
15 1 0.05
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.29
Consensus pattern (15 bp):
ATATGAAATTGGGAA
Found at i:74744475 original size:18 final size:18
Alignment explanation
Indices: 74744452--74744531 Score: 88
Period size: 18 Copynumber: 4.4 Consensus size: 18
74744442 TGGCCCATTA
*
74744452 CAGTAACAATAAACAGTG
1 CAGTAACAATAATCAGTG
* * *
74744470 CAGTAACGATAGTCGGTG
1 CAGTAACAATAATCAGTG
* *
74744488 CAGTAACAGTGATCAGTG
1 CAGTAACAATAATCAGTG
* *
74744506 TAGTAACAATAATCAATG
1 CAGTAACAATAATCAGTG
74744524 CAGTAACA
1 CAGTAACA
74744532 GTATACAAGT
Statistics
Matches: 48, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 48 1.00
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.21
Consensus pattern (18 bp):
CAGTAACAATAATCAGTG
Found at i:74744839 original size:27 final size:27
Alignment explanation
Indices: 74744801--74744856 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
74744791 ATACATCTCC
74744801 TAGGGGCATTTCAATCATTTTACCATG
1 TAGGGGCATTTCAATCATTTTACCATG
*
74744828 TAGGGGCATTTCAGTCATTTTACCATG
1 TAGGGGCATTTCAATCATTTTACCATG
74744855 TA
1 TA
74744857 AGGGTGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.38
Consensus pattern (27 bp):
TAGGGGCATTTCAATCATTTTACCATG
Found at i:74744870 original size:27 final size:27
Alignment explanation
Indices: 74744801--74744876 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 27
74744791 ATACATCTCC
** *
74744801 TAGGGGCATTTCAATCATTTTACCATG
1 TAGGGGCAAATCAGTCATTTTACCATG
**
74744828 TAGGGGCATTTCAGTCATTTTACCATG
1 TAGGGGCAAATCAGTCATTTTACCATG
74744855 TAAGGGTG-AAAT-AGTCATTTTA
1 T-AGGG-GCAAATCAGTCATTTTA
74744877 TCACATATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 37 0.84
28 6 0.14
29 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (27 bp):
TAGGGGCAAATCAGTCATTTTACCATG
Found at i:74747288 original size:21 final size:21
Alignment explanation
Indices: 74747262--74747303 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
74747252 TCTCAATTTA
74747262 TAATCCCTATAAATAATATCT
1 TAATCCCTATAAATAATATCT
*
74747283 TAATCCTTATAAATAATATCT
1 TAATCCCTATAAATAATATCT
74747304 CAAAATAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATCCCTATAAATAATATCT
Found at i:74748963 original size:30 final size:29
Alignment explanation
Indices: 74748904--74749006 Score: 111
Period size: 29 Copynumber: 3.6 Consensus size: 29
74748894 TACCTGTATC
* *
74748904 TGGCCCATTAAGCCC-AATCATAT-TCATA
1 TGGCCCATTAGGCCCAAATCAAATAT-ATA
* **
74748932 TGGCCCCTTTAGGCCCAAATCACCTATATA
1 TGG-CCCATTAGGCCCAAATCAAATATATA
*
74748962 TGGCCCATTAGGCCCAAATCAAATTTATA
1 TGGCCCATTAGGCCCAAATCAAATATATA
*
74748991 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
74749007 GTAAAATTCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.05
29 47 0.75
30 12 0.19
31 1 0.02
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCAAATATATA
Found at i:74749002 original size:58 final size:58
Alignment explanation
Indices: 74748895--74749006 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
74748885 AAATTCACAT
* * * *
74748895 ACCTGTATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCCTTTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAATCAAATTCATATGGCCCCGTTAGGCCCAAATC
* *
74748953 ACCTATATATGGCCCATTAGGCCCAAATCAAATTTATATGG-CCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCC-AATCAAATTCATATGGCCCCGTTAGGCCCA
74749007 GTAAAATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 33 0.70
59 14 0.30
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAATCAAATTCATATGGCCCCGTTAGGCCCAAATC
Found at i:74753480 original size:29 final size:29
Alignment explanation
Indices: 74753435--74753549 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
74753425 TACCTGTATC
* *
74753435 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCAAATTCATA
* **
74753463 TGGCCCTTTTAGGCCCAAATCACCTGT-ATA
1 TGGCCC-ATTAGGCCCAAATCAAAT-TCATA
* *
74753493 TGGACCATTAGGCCCAAATCAAATTTATA
1 TGGCCCATTAGGCCCAAATCAAATTCATA
* *
74753522 TGGCCCGTTAGGCCC-AGTCAAATTCATA
1 TGGCCCATTAGGCCCAAATCAAATTCATA
74753550 GTCATGCTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
28 18 0.25
29 38 0.54
30 14 0.20
31 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCAAATTCATA
Found at i:74753501 original size:58 final size:58
Alignment explanation
Indices: 74753426--74753537 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 58
74753416 AAATTCACAT
* * * *
74753426 ACCTGTATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCCTTTTAGGCCCAAATC
1 ACCTGTATATGGACCATTAAGCCCAAATCAAATTCATATGGCCC-GTTAGGCCCAAATC
* *
74753484 ACCTGTATATGGACCATTAGGCCCAAATCAAATTTATATGGCCCGTTAGGCCCA
1 ACCTGTATATGGACCATTAAGCCCAAATCAAATTCATATGGCCCGTTAGGCCCA
74753538 GTCAAATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
58 30 0.64
59 17 0.36
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (58 bp):
ACCTGTATATGGACCATTAAGCCCAAATCAAATTCATATGGCCCGTTAGGCCCAAATC
Found at i:74753796 original size:24 final size:24
Alignment explanation
Indices: 74753760--74753811 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
74753750 CATATCCAGA
74753760 TTTTTGGCTTTTCAACATTTCGAC
1 TTTTTGGCTTTTCAACATTTCGAC
**
74753784 TTTTTGG-TATTTCGGCATTTCGAC
1 TTTTTGGCT-TTTCAACATTTCGAC
74753808 TTTT
1 TTTT
74753812 ACCGATTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.13, C:0.17, G:0.15, T:0.54
Consensus pattern (24 bp):
TTTTTGGCTTTTCAACATTTCGAC
Found at i:74758000 original size:29 final size:28
Alignment explanation
Indices: 74757956--74758044 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 28
74757946 TACCTGTATC
* *
74757956 TGGCACATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCATATT-ATA
* **
74757984 TGGCCCCTTTAGGCCCAAATCACCTGTATA
1 TGG-CCCATTAGGCCCAAATCATAT-TATA
74758014 TGGCCCATTAGGCCCAAATCATATTTATA
1 TGGCCCATTAGGCCCAAATCATA-TTATA
74758043 TG
1 TG
74758045 AAACGTTGGG
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
28 3 0.06
29 32 0.65
30 13 0.27
31 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCATATTATA
Found at i:74760868 original size:37 final size:37
Alignment explanation
Indices: 74760805--74760910 Score: 167
Period size: 37 Copynumber: 2.9 Consensus size: 37
74760795 CTTTAGCTCA
* * * *
74760805 GACAAAATCTCTACATGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
74760842 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
74760879 GACATAATCTCCACACGTAGTCATCGGGTCTT
1 GACAAAATCTCCACACGTAGTCATCGGGTCTT
74760911 TAGAGCTCGG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:74761116 original size:47 final size:47
Alignment explanation
Indices: 74761029--74761674 Score: 1067
Period size: 47 Copynumber: 13.6 Consensus size: 47
74761019 CCCTTCGGGA
* * * * * *
74761029 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
74761076 CCTGTCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74761123 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74761170 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74761217 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74761264 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74761313 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74761360 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74761407 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74761454 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74761503 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
74761550 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74761599 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74761646 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
74761675 TATTCAAATA
Statistics
Matches: 563, Mismatches: 28, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
47 410 0.73
49 153 0.27
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74761310 original size:96 final size:96
Alignment explanation
Indices: 74761029--74761674 Score: 1097
Period size: 96 Copynumber: 6.8 Consensus size: 96
74761019 CCCTTCGGGA
* * * * * * * * *
74761029 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCGC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
74761092 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
74761123 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
74761186 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
74761217 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
74761282 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
74761313 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
74761376 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
74761407 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
74761472 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
74761503 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
74761568 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
74761599 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
74761664 ACTTTCACATT
66 ACTTTCACATT
74761675 TATTCAAATA
Statistics
Matches: 533, Mismatches: 15, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
94 233 0.44
96 300 0.56
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74761350 original size:190 final size:190
Alignment explanation
Indices: 74761029--74761674 Score: 1107
Period size: 190 Copynumber: 3.4 Consensus size: 190
74761019 CCCTTCGGGA
* * * * * * * * *
74761029 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCGC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
74761092 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
74761157 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74761217 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
74761282 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
74761347 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
74761407 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* * *
74761472 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAATTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
74761537 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
131 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
74761599 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
74761664 ACTTTCACATT
66 ACTTTCACATT
74761675 TATTCAAATA
Statistics
Matches: 434, Mismatches: 20, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
188 46 0.11
190 277 0.64
192 111 0.26
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:74765930 original size:40 final size:40
Alignment explanation
Indices: 74765739--74765930 Score: 224
Period size: 40 Copynumber: 4.8 Consensus size: 40
74765729 CCAGCATGAT
* * * *
74765739 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
74765779 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
74765819 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
74765859 TGCTCTTCGAAACTTA-CTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGC-CCGGATATATCACTAGCACGAA
* * *
74765899 TGCTCTTCGGGATTTAGCCCGGACATTTCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
74765931 CTCAATTCTC
Statistics
Matches: 129, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
40 128 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:74768875 original size:25 final size:24
Alignment explanation
Indices: 74768794--74768891 Score: 63
Period size: 25 Copynumber: 4.0 Consensus size: 24
74768784 TTAACCCATT
* * *
74768794 ACAGAATAAGAAACATTATCAG-A
1 ACAGAATCAGAATCAGTATCAGTA
* * * *
74768817 ACTAGAATTAGAATCAGAATTAGGTG
1 AC-AGAATCAGAATCAGTATCA-GTA
*
74768843 ACAAAATCAGAATCAGTATCAGATA
1 ACAGAATCAGAATCAGTATCAG-TA
* * *
74768868 ACAGAATCAAAAGCAGAATCAGTA
1 ACAGAATCAGAATCAGTATCAGTA
74768892 TCAGGTAACA
Statistics
Matches: 56, Mismatches: 15, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
23 2 0.04
24 17 0.30
25 35 0.62
26 2 0.04
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.19
Consensus pattern (24 bp):
ACAGAATCAGAATCAGTATCAGTA
Found at i:74768879 original size:31 final size:31
Alignment explanation
Indices: 74768844--74768918 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
74768834 AATTAGGTGA
*
74768844 CAAAATCAGAATCAGTATCAGATAACAGAAT
1 CAAAATCAGAATCAGTATCAGATAACACAAT
* *
74768875 CAAAAGCAGAATCAGTATCAGGTAACACAAT
1 CAAAATCAGAATCAGTATCAGATAACACAAT
74768906 CAAAAATCAGAAT
1 C-AAAATCAGAAT
74768919 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
31 29 0.74
32 10 0.26
ACGTcount: A:0.52, C:0.17, G:0.13, T:0.17
Consensus pattern (31 bp):
CAAAATCAGAATCAGTATCAGATAACACAAT
Found at i:74769097 original size:27 final size:26
Alignment explanation
Indices: 74769055--74769156 Score: 87
Period size: 27 Copynumber: 3.8 Consensus size: 26
74769045 GCTCAGTTAT
* * *
74769055 CAGATATAGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
74769082 CAGATATTGTGGCAGAGCCAGCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* * *
74769108 CAGATATTTGTGGTATAGCCACTAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* * *
74769136 CAAATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
74769157 TTAACAGAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
26 7 0.11
27 47 0.77
28 7 0.11
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:74769340 original size:22 final size:22
Alignment explanation
Indices: 74769315--74769379 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
74769305 GCCAATACGT
*
74769315 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
74769337 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
74769359 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
74769380 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:74770107 original size:27 final size:27
Alignment explanation
Indices: 74769824--74770108 Score: 353
Period size: 27 Copynumber: 10.6 Consensus size: 27
74769814 TACCCCACAA
* *
74769824 GGTATCTCGATAATTCCACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* * *
74769851 GGTATTTTAGA-ATTTCTACCCTATAGG
1 GGTA-TTTCGATAATTCTACCCTACAGG
*
74769878 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
74769905 GGTATTT-TAGTAATTCTACCCTATAGG
1 GGTATTTCGA-TAATTCTACCCTACAGG
*
74769932 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
74769959 GGTA-TTCTGATAATTCTACCCTACAGG
1 GGTATTTC-GATAATTCTACCCTACAGG
* * *
74769986 GTTATTCCGATAATTCTACCTTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
*
74770013 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGATAATTCTACCCTACAGG
* *
74770040 GGTATTGCGATAATTCTACCCTACAAG
1 GGTATTTCGATAATTCTACCCTACAGG
*
74770067 GGTCTTTC-AGTAATTCTACCCTACAGG
1 GGTATTTCGA-TAATTCTACCCTACAGG
*
74770094 GGTATTGCGATAATT
1 GGTATTTCGATAATT
74770109 TCACAAATCA
Statistics
Matches: 219, Mismatches: 31, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.04
27 204 0.93
28 7 0.03
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTATTTCGATAATTCTACCCTACAGG
Found at i:74770154 original size:27 final size:27
Alignment explanation
Indices: 74770090--74770165 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
74770080 TTCTACCCTA
** * * *
74770090 CAGGGGTATTGCGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
74770117 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
74770144 CAGGGGTATTTTTGTAATTTTA
1 CAGGGGTATTTTGGTAATTTTA
74770166 TTGATTGAGG
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:74770162 original size:54 final size:54
Alignment explanation
Indices: 74770104--74770208 Score: 122
Period size: 54 Copynumber: 1.9 Consensus size: 54
74770094 GGTATTGCGA
*
74770104 TAATTTCACAAATCAG-GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTTG
1 TAATTTCACAAAT-AGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTTG
* *** * **
74770158 TAATTTTATTGATTGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 TAATTTCACAAATAGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
74770209 CAATAATTTT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.02
54 41 0.98
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.43
Consensus pattern (54 bp):
TAATTTCACAAATAGAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTTG
Found at i:74770203 original size:27 final size:27
Alignment explanation
Indices: 74770120--74770208 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 27
74770110 CACAAATCAG
* *
74770120 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
* ** ***
74770147 GGGTATTTTTGTAATTTTATTGATTGA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
74770174 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
74770201 GGGTATTT
1 GGGTATTT
74770209 CAATAATTTT
Statistics
Matches: 47, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.26, C:0.06, G:0.24, T:0.45
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:74770216 original size:54 final size:54
Alignment explanation
Indices: 74770120--74770232 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
74770110 CACAAATCAG
* *** **
74770120 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTTGTAATTTTATTGATTGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATTGA
** *
74770174 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTCAATAATTTTGTAAATTGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATTGA
74770228 GGGTA
1 GGGTA
74770233 AAATAGTAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.43
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAATAATTTTATAAATTGA
Found at i:74770230 original size:27 final size:27
Alignment explanation
Indices: 74770169--74770232 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
74770159 AATTTTATTG
***
74770169 ATTGAGGGTATTTTGGTAATTTTGTAA
1 ATTGAGGGTATTTCAATAATTTTGTAA
***
74770196 ACCAAGGGTATTTCAATAATTTTGTAA
1 ATTGAGGGTATTTCAATAATTTTGTAA
74770223 ATTGAGGGTA
1 ATTGAGGGTA
74770233 AAATAGTAAT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.41
Consensus pattern (27 bp):
ATTGAGGGTATTTCAATAATTTTGTAA
Found at i:74770242 original size:27 final size:27
Alignment explanation
Indices: 74770220--74770382 Score: 236
Period size: 27 Copynumber: 6.0 Consensus size: 27
74770210 AATAATTTTG
* *
74770220 TAAATTGAGGGTAAAATAGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
** *
74770247 TAAATCGAGGGTAAAACAGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
74770274 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
74770301 TAAATCCAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* * *
74770328 TAAATCGAGGGTAAAACGATAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
74770355 TAAATCGAGGGTAAAATGGTAATCCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
74770382 T
1 T
74770383 CTTACAGGAG
Statistics
Matches: 121, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTA
Found at i:74770242 original size:54 final size:54
Alignment explanation
Indices: 74770184--74770370 Score: 171
Period size: 54 Copynumber: 3.5 Consensus size: 54
74770174 GGGTATTTTG
* * *** * *
74770184 GTAATTTTGTAAACCAAGGGTATTTCAATAATTTTGTAAATTGAGGGTAAAATA
1 GTAATTCTATAAACCAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATA
* * * *
74770238 GTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAACCAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATA
*** * *
74770292 GTAATTCTATAAATCC-AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA-C
1 GTAATTCTATAAA-CCAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATA
* * *
74770345 GATAATTCTGTAAATCGAGGGTAAAA
1 G-TAATTCTATAAACCAAGGGTAAAA
74770371 TGGTAATCCT
Statistics
Matches: 112, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
53 2 0.02
54 109 0.97
55 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (54 bp):
GTAATTCTATAAACCAAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATA
Found at i:74770370 original size:81 final size:81
Alignment explanation
Indices: 74770227--74770382 Score: 278
Period size: 81 Copynumber: 1.9 Consensus size: 81
74770217 TTGTAAATTG
74770227 AGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
1 AGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
*
74770292 GTAATTCTATAAATCC
66 GTAATCCTATAAATCC
*
74770308 AGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAAC-GATAATTCTGTAAATCGAGGGTAAAAT
1 AGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAAT
74770372 GGTAATCCTAT
65 GGTAATCCTAT
74770383 CTTACAGGAG
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
80 1 0.01
81 71 0.99
ACGTcount: A:0.41, C:0.10, G:0.21, T:0.28
Consensus pattern (81 bp):
AGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAATG
GTAATCCTATAAATCC
Found at i:74770455 original size:27 final size:26
Alignment explanation
Indices: 74770392--74770540 Score: 158
Period size: 27 Copynumber: 5.6 Consensus size: 26
74770382 TCTTACAGGA
74770392 GTATTTCAGTAATTTTACAAATCGAG
1 GTATTTCAGTAATTTTACAAATCGAG
*
74770418 GTATTTCAGTAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GA-G
*
74770445 GTATTTCAGTAATTTTACAAATCAAG
1 GTATTTCAGTAATTTTACAAATCGAG
** * *
74770471 GATATTTGGGTAATTTTATAAATCGGGG
1 G-TATTTCAGTAATTTTACAAATC-GAG
* *
74770499 GTACTTT-GGTAATTTTACAAGTCGAGG
1 GTA-TTTCAGTAATTTTACAAATCGA-G
74770526 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
74770541 GGTAAACTAA
Statistics
Matches: 103, Mismatches: 12, Indels: 15
0.79 0.09 0.12
Matches are distributed among these distances:
25 1 0.01
26 28 0.27
27 68 0.66
28 6 0.06
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
GTATTTCAGTAATTTTACAAATCGAG
Found at i:74773359 original size:94 final size:92
Alignment explanation
Indices: 74773119--74773382 Score: 270
Period size: 94 Copynumber: 2.8 Consensus size: 92
74773109 AGGTGCCGGC
* * ** *
74773119 GCCATGTCCCAGACATGGTCTCACACAAATTCTAGCATATTTGTGCCGATGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTA-CATATGTG-GCCGATG-CATGTCCCAGACA
*
74773184 TGGTCTTACACT-GACACATCTCATAGCCGGT
63 T-GTCTTACACTAG-CACATCTCATAGCCGAT
* * * * * *
74773215 G-CATGTCCCAGACAT-GTCGTACACTGGCT-TACATCTCGAGGCCGAAGCATGTCCTAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTACATAT-GTGGCCGATGCATGTCCCAGACATG
*
74773277 TCTTACACTAGCACTTGTCTCA-ATGCCGAT
65 TCTTACACTAGCAC--ATCTCATA-GCCGAT
*
74773307 GCCATGTCCTAGACATGGTCTTACACTAGCTCT-CATAATGTGGCCGATGCATGTCCCAGACATG
1 GCCATGTCCCAGACATGGTCTTACACTAGCTCTACAT-ATGTGGCCGATGCATGTCCCAGACATG
74773371 TCTTACACTAGC
65 TCTTACACTAGC
74773383 TCACCCAAAT
Statistics
Matches: 139, Mismatches: 20, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
90 13 0.09
91 15 0.11
92 21 0.15
93 16 0.12
94 57 0.41
95 16 0.12
96 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (92 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCTCTACATATGTGGCCGATGCATGTCCCAGACATGT
CTTACACTAGCACATCTCATAGCCGAT
Found at i:74773384 original size:46 final size:42
Alignment explanation
Indices: 74773162--74773384 Score: 164
Period size: 46 Copynumber: 4.9 Consensus size: 42
74773152 AGCATATTTG
*
74773162 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCATA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACT-A-GC-TCTCATA
* * *
74773209 -GCCGGTGCATGTCCCAGACATGTCGTACACTGGCT-TACATCTCGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CA--T--A
* * *
74773254 GGCCGAAGCATGTCCTAGACATGTCTTACACTAGCACTTGTCTCA-A
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAG--C---TCTCATA
*
74773300 TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-A
74773345 TGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 --T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
74773385 ACCCAAATGA
Statistics
Matches: 145, Mismatches: 12, Indels: 39
0.74 0.06 0.20
Matches are distributed among these distances:
40 1 0.01
41 3 0.02
42 1 0.01
43 6 0.04
44 9 0.06
45 16 0.11
46 57 0.39
47 28 0.19
48 20 0.14
51 3 0.02
52 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (42 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATA
Found at i:74780986 original size:40 final size:40
Alignment explanation
Indices: 74780865--74781010 Score: 143
Period size: 40 Copynumber: 3.7 Consensus size: 40
74780855 CTAACGGGGT
* * * * *
74780865 TAAGTACCGAAGACAATTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* * * *
74780905 TAAGTCCAGAAGGTATTTGTGCGAGTTACTAATTCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
* *
74780945 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGC
** *
74780985 TAACACCCGACGGC-TTTGTGCGAGTG
1 TAAGTCCCGAAGGCATTTGTGCGAGTG
74781011 GTTATATCCG
Statistics
Matches: 86, Mismatches: 19, Indels: 3
0.80 0.18 0.03
Matches are distributed among these distances:
39 13 0.15
40 73 0.85
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGC
Found at i:74794035 original size:18 final size:17
Alignment explanation
Indices: 74794009--74794042 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
74793999 CATAATGCAG
74794009 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
74794027 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
74794043 TAGCCCAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:74805583 original size:47 final size:47
Alignment explanation
Indices: 74805521--74805615 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
74805511 TCTTTAAACT
74805521 CGCGAGGTTGTATATGACTATCATGTCATCTCTTTGATATTTCTTTA
1 CGCGAGGTTGTATATGACTATCATGTCATCTCTTTGATATTTCTTTA
74805568 CGCGAGGTTGTATATGACTATCATGTCATCTCTTTGATATTTCTTTA
1 CGCGAGGTTGTATATGACTATCATGTCATCTCTTTGATATTTCTTTA
74805615 C
1 C
74805616 ACATTTTGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.21, C:0.18, G:0.17, T:0.44
Consensus pattern (47 bp):
CGCGAGGTTGTATATGACTATCATGTCATCTCTTTGATATTTCTTTA
Found at i:74813735 original size:27 final size:26
Alignment explanation
Indices: 74813704--74813763 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
74813694 TTTAGACAAT
*
74813704 TTAAATAATTA-ATTAAAACCTAAATTA
1 TTAAATAAATATATTAAAA--TAAATTA
* *
74813731 TTAAATAAATATTTTAAAATGAATTA
1 TTAAATAAATATATTAAAATAAATTA
74813757 TTAAATA
1 TTAAATA
74813764 TAATTTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 13 0.45
27 10 0.34
28 6 0.21
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (26 bp):
TTAAATAAATATATTAAAATAAATTA
Found at i:74825046 original size:25 final size:25
Alignment explanation
Indices: 74825016--74825082 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
74825006 GTTCTGACCT
*
74825016 ACAGCTCGTGTGAGCATTTTAATTC
1 ACAGCTCGTGTGAGCATTCTAATTC
* *
74825041 ATAGCTCTTGTGAGCATTCTAATTC
1 ACAGCTCGTGTGAGCATTCTAATTC
74825066 ACAGCTCGTGTGAGCAT
1 ACAGCTCGTGTGAGCAT
74825083 ACATGTATAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATTCTAATTC
Found at i:74829982 original size:17 final size:17
Alignment explanation
Indices: 74829962--74829994 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
74829952 ATTAAGAATG
74829962 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
74829979 TTATTAAATTATATTT
1 TTATTAAATTATATTT
74829995 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:74830265 original size:16 final size:16
Alignment explanation
Indices: 74830241--74830296 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
74830231 TGAATTACTT
*
74830241 ATTATAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
74830257 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
74830273 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
74830289 ATTACAGC
1 ATTACAGC
74830297 CAACCAAACG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:74835074 original size:47 final size:47
Alignment explanation
Indices: 74835023--74835136 Score: 176
Period size: 47 Copynumber: 2.4 Consensus size: 47
74835013 ATGTCAATGC
*
74835023 CATGTCCCAGGCATGGTCTTAAACTGGCTCTCATAATGTGGCCGATG
1 CATGTCCCAGACATGGTCTTAAACTGGCTCTCATAATGTGGCCGATG
* * *
74835070 CATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGTCGATG
1 CATGTCCCAGACATGGTCTTAAACTGGCTCTCATAATGTGGCCGATG
*
74835117 CATGTCCTAGACAT-GTCTTA
1 CATGTCCCAGACATGGTCTTA
74835137 CACTAGCTTG
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
46 6 0.10
47 56 0.90
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.31
Consensus pattern (47 bp):
CATGTCCCAGACATGGTCTTAAACTGGCTCTCATAATGTGGCCGATG
Done.