Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 222 of 345
Found at i:75118917 original size:92 final size:92
Alignment explanation
Indices: 75118689--75119006 Score: 361
Period size: 92 Copynumber: 3.5 Consensus size: 92
75118679 TTATCTTCGA
* * * * * * *
75118689 CATGATGCTATAGTGTCTTTCAACTATGGTCTTACTTATTTTC-TATCAGGTTGTCATGGTATCT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTGCCATGGTATCT
* ** *
75118753 TTCAACCACGGTCTTATTCATTTCCCTAT
65 TTCAACCATGGTCTTACACATTT-CATAT
* * * *
75118782 CATGTTGCCATTGTATCTCTCAACCATGGTCTTAGTTATTTCATATCACGTTGCCATGGTATCTT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTT
75118847 TCAACCATGGTCTTACACATTTCATAT
66 TCAACCATGGTCTTACACATTTCATAT
* * * *
75118874 CATGTTGCCATAGTATATTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATTTT
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTT
* *
75118939 TCAACCATGGTCTTGCACATTTGA-AT
66 TCAACCATGGTCTTACACATTTCATAT
** * ** *
75118965 CGCGATGCCATAGCGTCTTTCAACTATGGTCTTACTCATTTC
1 CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCATTTC
75119007 TGGTATGATG
Statistics
Matches: 193, Mismatches: 31, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
91 36 0.19
92 87 0.45
93 70 0.36
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (92 bp):
CATGTTGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCATAT
Found at i:75118958 original size:46 final size:46
Alignment explanation
Indices: 75118704--75119006 Score: 322
Period size: 46 Copynumber: 6.6 Consensus size: 46
75118694 TGCTATAGTG
* ** * *
75118704 TCTTTCAACTATGGTCTTACTTATTTTC-TATCAGGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTA
* ** * *
75118750 TCTTTCAACCACGGTCTTATTCATTTCCCTATCATGTTGCCATTGTA
1 TCTTTCAACCATGGTCTTACACATTT-CATATCATGTTGCCATGGTA
* *** *
75118797 TCTCTCAACCATGGTCTTAGTTATTTCATATCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
75118843 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATAGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
*
75118889 TATTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
* * * ** * * **
75118935 TTTTTCAACCATGGTCTTGCACATTTGA-ATCGCGATGCCATAGCG
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
* *
75118980 TCTTTCAACTATGGTCTTACTCATTTC
1 TCTTTCAACCATGGTCTTACACATTTC
75119007 TGGTATGATG
Statistics
Matches: 219, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
45 36 0.16
46 146 0.67
47 37 0.17
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTA
Found at i:75145704 original size:93 final size:93
Alignment explanation
Indices: 75145592--75145764 Score: 294
Period size: 93 Copynumber: 1.9 Consensus size: 93
75145582 CGCCCATAAG
*
75145592 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCATCCATAAGTGAACTCGGACTCAACTC
75145656 AAAGAGCTCGGATGCCTAGTTACATCTCA
65 AAAGAGCTCGGATGCCTAGTTACATCTCA
*
75145685 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
75145750 ACGAGTTCGGATGCC
66 AAGAGCTCGGATGCC
75145765 CAAATATCCC
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
AAGAGCTCGGATGCCTAGTTACATCTCA
Found at i:75145755 original size:46 final size:46
Alignment explanation
Indices: 75145585--75145760 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
75145575 TGTAACCCGC
*
75145585 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTC-GGACGCTCGCAT
* * * *
75145631 CCATAAGTGAACTCGGACTCAACTCAAAGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCG---CAT
* *
75145681 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* *
75145724 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
75145761 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 4 0.04
46 65 0.60
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:75145779 original size:46 final size:45
Alignment explanation
Indices: 75145636--75145779 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
75145626 CGCATCCATA
* * * *
75145636 AGTGAACTCGGACTCAACTCAAAGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
75145684 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
75145729 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
75145775 AGTGA
1 AGTGA
75145780 CATGTCACTT
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.49
47 29 0.38
48 5 0.07
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:75148201 original size:15 final size:15
Alignment explanation
Indices: 75148143--75148222 Score: 60
Period size: 15 Copynumber: 5.4 Consensus size: 15
75148133 CAAAGATAAC
*
75148143 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
75148157 AAGAAATCTA-AGATA
1 AAGAAATCCAGA-ATA
* *
75148172 GAGAAACTCGA-AATA
1 AAGAAA-TCCAGAATA
75148187 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
*
75148202 AA-AAGATCCAGGATA
1 AAGAA-ATCCAGAATA
75148217 AAGAAA
1 AAGAAA
75148223 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
14 13 0.25
15 34 0.64
16 6 0.11
ACGTcount: A:0.60, C:0.11, G:0.16, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:75148231 original size:15 final size:15
Alignment explanation
Indices: 75148154--75148231 Score: 63
Period size: 15 Copynumber: 5.2 Consensus size: 15
75148144 AGAAAACCGA
*
75148154 ATAAAGAAATCTAAG
1 ATAAAGAAATCCAAG
* *
75148169 ATAGAGAAACTCGAA-
1 ATAAAGAAA-TCCAAG
75148184 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
75148198 AATAAA-AAGATCCAGG
1 -ATAAAGAA-ATCCAAG
*
75148214 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
75148229 ATA
1 ATA
75148232 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
13 1 0.02
14 4 0.08
15 38 0.76
16 7 0.14
ACGTcount: A:0.58, C:0.13, G:0.15, T:0.14
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:75149932 original size:26 final size:27
Alignment explanation
Indices: 75149872--75149932 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
75149862 ACGAGGCTAC
* *
75149872 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATAGTGACGAAGCCACCAGATA
* *
75149899 CAGATATAGTGGCGAGGCCACCAGA-A
1 CAGATATAGTGACGAAGCCACCAGATA
75149925 CAGATATA
1 CAGATATA
75149933 TATACATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (27 bp):
CAGATATAGTGACGAAGCCACCAGATA
Found at i:75155810 original size:42 final size:42
Alignment explanation
Indices: 75155722--75155876 Score: 135
Period size: 42 Copynumber: 3.7 Consensus size: 42
75155712 TGTGTTATCG
* *
75155722 TGTAAGACCACGTCTGGGACT-TTGGCATCG-ACTTATG-TTAT-G
1 TGTAAGACCACGTTTGGGA-TGTTGGCATCGTA-TT-TGATT-TCA
75155764 TGTAAGACCACGTTTGGGATGTTGGCATCGTATTTGATTTCA
1 TGTAAGACCACGTTTGGGATGTTGGCATCGTATTTGATTTCA
*
75155806 TGTAAGACC-C-TATCTGGGATAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGT-T-TGGGAT-GTTGGCATCG-TATTTGATTTCA
* **
75155849 TGTATGACCACGTTTGGGACATTGGCAT
1 TGTAAGACCACGTTTGGGATGTTGGCAT
75155877 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 6, Indels: 21
0.78 0.05 0.17
Matches are distributed among these distances:
40 1 0.01
41 6 0.06
42 54 0.56
43 32 0.33
44 2 0.02
45 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (42 bp):
TGTAAGACCACGTTTGGGATGTTGGCATCGTATTTGATTTCA
Found at i:75163669 original size:52 final size:52
Alignment explanation
Indices: 75163591--75163694 Score: 181
Period size: 52 Copynumber: 2.0 Consensus size: 52
75163581 TTTGGTTTGA
* *
75163591 CAAGTTATGGTGTTGTGAATGTGTTGAGTGTGGATAATGAAATGACAAGATT
1 CAAGTTATGGTGTTGTAAATGTGTTGAGTGTGCATAATGAAATGACAAGATT
*
75163643 CAAGTTATGGTGTTGTAAATGTGTTGAGTGTGCATAATGAAATGACATGATT
1 CAAGTTATGGTGTTGTAAATGTGTTGAGTGTGCATAATGAAATGACAAGATT
75163695 TGGCCATGTT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.31, C:0.05, G:0.29, T:0.36
Consensus pattern (52 bp):
CAAGTTATGGTGTTGTAAATGTGTTGAGTGTGCATAATGAAATGACAAGATT
Found at i:75164179 original size:20 final size:20
Alignment explanation
Indices: 75164156--75164210 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
75164146 GGTGTGAGTG
75164156 ACCACACGGGCGTGTCCTAA
1 ACCACACGGGCGTGTCCTAA
*
75164176 ACCACATGGGCGTGTCCTAA
1 ACCACACGGGCGTGTCCTAA
75164196 ACCACACGGGCGTGT
1 ACCACACGGGCGTGT
75164211 AGCTCCTGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.24, C:0.33, G:0.27, T:0.16
Consensus pattern (20 bp):
ACCACACGGGCGTGTCCTAA
Found at i:75173180 original size:23 final size:23
Alignment explanation
Indices: 75173149--75173200 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
75173139 AGACTCACCA
*
75173149 CAGCTCGTATGAGCCTACTGATTT
1 CAGCTCGTAAGAGCCTACTG-TTT
*
75173173 -AGCTCGTAAGAGCTTACTGTTT
1 CAGCTCGTAAGAGCCTACTGTTT
75173195 CAGCTC
1 CAGCTC
75173201 ATTGGAGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 3 0.12
23 22 0.88
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (23 bp):
CAGCTCGTAAGAGCCTACTGTTT
Found at i:75173208 original size:23 final size:22
Alignment explanation
Indices: 75173182--75173267 Score: 77
Period size: 23 Copynumber: 3.8 Consensus size: 22
75173172 TAGCTCGTAA
75173182 GAGCTTACTGTTTCAGCTC-ATT
1 GAGCTTACTG-TTCAGCTCAATT
* * *
75173204 GGAGCTTACCGTTCAGCTCGATA
1 -GAGCTTACTGTTCAGCTCAATT
* *
75173227 GAGCCTATCAT-TTTAGCTCAATT
1 GAGCTTA-C-TGTTCAGCTCAATT
75173250 GAGCTTACTGTTCAGCTC
1 GAGCTTACTGTTCAGCTC
75173268 GAAGGAGCTT
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
21 1 0.02
22 22 0.44
23 27 0.54
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (22 bp):
GAGCTTACTGTTCAGCTCAATT
Found at i:75173223 original size:45 final size:43
Alignment explanation
Indices: 75173173--75173279 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 43
75173163 CTACTGATTT
75173173 AGCTCGTAAGAGCTTAC-TGTTTCAGCTC-ATTGGAGCTTACCGTTC
1 AGCTCG-AAGAGCTTACAT-TTT-AGCTCAATT-GAGCTTACCGTTC
* *
75173218 AGCTCGATAGAGCCTATCATTTTAGCTCAATTGAGCTTACTGTTC
1 AGCTCGA-AGAGCTTA-CATTTTAGCTCAATTGAGCTTACCGTTC
75173263 AGCTCGAAGGAGCTTAC
1 AGCTCGAA-GAGCTTAC
75173280 CGACCATGAC
Statistics
Matches: 54, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
44 3 0.06
45 43 0.80
46 7 0.13
47 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (43 bp):
AGCTCGAAGAGCTTACATTTTAGCTCAATTGAGCTTACCGTTC
Found at i:75173230 original size:22 final size:22
Alignment explanation
Indices: 75173173--75173281 Score: 71
Period size: 22 Copynumber: 4.9 Consensus size: 22
75173163 CTACTGATTT
*
75173173 AGCTCG-TAAGAGCTTACTGTTTC
1 AGCTCGAT-AGAGCTTACCG-TTC
*
75173196 AGCTC-ATTGGAGCTTACCGTTC
1 AGCTCGA-TAGAGCTTACCGTTC
* ** *
75173218 AGCTCGATAGAGCCTATCATTTT
1 AGCTCGATAGAGCTTA-CCGTTC
* * *
75173241 AGCTCAATTGAGCTTACTGTTC
1 AGCTCGATAGAGCTTACCGTTC
75173263 AGCTCGA-AGGAGCTTACCG
1 AGCTCGATA-GAGCTTACCG
75173282 ACCATGACTC
Statistics
Matches: 65, Mismatches: 16, Indels: 11
0.71 0.17 0.12
Matches are distributed among these distances:
22 33 0.51
23 31 0.48
24 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (22 bp):
AGCTCGATAGAGCTTACCGTTC
Found at i:75182474 original size:29 final size:28
Alignment explanation
Indices: 75182428--75182512 Score: 109
Period size: 29 Copynumber: 3.0 Consensus size: 28
75182418 TATCTGTATT
* *
75182428 TGGCCCATTA-ACCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
75182455 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
**
75182484 TGGCCCATTAGGCCCTGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
75182512 T
1 T
75182513 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 10 0.20
28 14 0.28
29 26 0.52
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:75188519 original size:70 final size:70
Alignment explanation
Indices: 75188436--75188809 Score: 536
Period size: 70 Copynumber: 5.4 Consensus size: 70
75188426 TATGCTATTG
*
75188436 TAAA-TATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTATTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
75188500 TACTA
66 TACTA
* * * * *
75188505 TAAATTATTGGTTGTCCAAATTAGGATAAATTCATGGTGCTTAACTAGTTAATATGTGGTTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
*
75188570 TACTT
66 TACTA
75188575 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGCTT-CTGTT
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATG-TTGCTGTT
*
75188639 ATACTG
65 ATACTA
* * *
75188645 TAAATTATTGGCTGTACAAATTAGGACAAATTTATGGTGCTTAGCTAATTAATATGTTGCTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
*
75188710 TACTG
66 TACTA
* * *
75188715 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGTTTAGCTAATTAAAATGTTGTTGTTA
1 TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
*
75188780 TAATA
66 TACTA
* * ** *
75188785 TGAATCATTGACTATCCAAATTAGG
1 TAAATTATTGGTTGTCCAAATTAGG
75188810 TCATAATTAT
Statistics
Matches: 273, Mismatches: 29, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
69 6 0.02
70 266 0.97
71 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.40
Consensus pattern (70 bp):
TAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGTTGCTGTTA
TACTA
Found at i:75188866 original size:140 final size:140
Alignment explanation
Indices: 75188434--75188870 Score: 393
Period size: 140 Copynumber: 3.1 Consensus size: 140
75188424 AATATGCTAT
* *
75188434 TGTAAAT-ATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATG-TTGCTA
1 TGTAAATCATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAAAATGCTT-CTG
* * ** * * * * * * * *
75188497 TTATACTATAAATTATTGGTTGTCCAAATTAGGATAAATTCATGGTGCTTA-ACTAGTTAATATG
65 TTATAATATAAATCATTGACTATACAAATTAGGACAAATTTATAGTACTTAGA-TAATTAAAATG
**
75188561 -TGGTTGTTATAC
129 CT-AATGTTATAC
* * *
75188573 TTTAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAATATGCTTCTGT
1 TGTAAATCATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAAAATGCTTCTGT
* * * * * * * * * *
75188638 TATACTGTAAATTATTGGCTGTACAAATTAGGACAAATTTATGGTGCTTAGCTAATTAATATGTT
66 TATAATATAAATCATTGACTATACAAATTAGGACAAATTTATAGTACTTAGATAATTAAAATGCT
**
75188703 GCTGTTATAC
131 AATGTTATAC
* * *
75188713 TGTAAATTATTGGTTGTCCAAATTAGGACAAATTCATGGTGTTTAGCTAATTAAAATG-TTGTTG
1 TGTAAATCATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAAAATGCTT-CTG
* * * * *
75188777 TTATAATATGAATCATTGACTATCCAAATTAGGTCATAA-TTATAGTATTTAGATGATTAAAATG
65 TTATAATATAAATCATTGACTATACAAATTAGGACA-AATTTATAGTACTTAGATAATTAAAATG
*
75188841 CTAATGTTGTGA-
129 CTAATGTTAT-AC
* *
75188853 TGTGAATCGTTGGTTGTC
1 TGTAAATCATTGGTTGTC
75188871 TGATTTAATT
Statistics
Matches: 256, Mismatches: 35, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
139 8 0.03
140 242 0.95
141 6 0.02
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.41
Consensus pattern (140 bp):
TGTAAATCATTGGTTGTCCAAATTAGGACAAATTCATGGTGCTTAGCTAATTAAAATGCTTCTGT
TATAATATAAATCATTGACTATACAAATTAGGACAAATTTATAGTACTTAGATAATTAAAATGCT
AATGTTATAC
Found at i:75190219 original size:349 final size:348
Alignment explanation
Indices: 75189565--75190263 Score: 1245
Period size: 349 Copynumber: 2.0 Consensus size: 348
75189555 ATTTAAGTCC
*
75189565 TTACATAATTTATTTTATATTATAACATTAGTTATAGAAATGCTACTGAGTTGATTGCTCAACGT
1 TTACATAATTTATTTTATATTATAACATTAGTTATAGAAATGCTACTGAGTTGATTACTCAACGT
* *
75189630 TCGGTTTGTCTTCCGTGTGCAAGTTAGGTTCAATTGTGTGAACTCATTATTACTAGCATCCAATA
66 TCGGTTTGTCTTCCGTGTGCAAGTTAGGTTCAATCGTGTGAACTCATTATTACTAGCATCCAACA
* * *
75189695 GAAAATCTTGTATTCATCTAATTGTGAAACTTTTTTTAATCTGGTTGGCATGTACCTATAGGATT
131 GAAAATCCTGTATTCATCTAATTGTGAAACTTTTGTTAATCTCGTTGGCATGTACCTATAGGATT
*
75189760 TTATGTTATATTCTACTTAGTTGGAGAATTAATTCATACTTCGAGATGTTTTATAAATAGGCACA
196 TTATGTTATATTCTACTTAGTTAGAGAATTAATTCATACTTCGAGATGTTTTATAAATAGGCACA
* *
75189825 TATGATAGTTGTTAATGGTTCATACCATGTATATGTTTGGTGTTGATGATGTTATGCGAGTTTTT
261 TATGATAGTTGTTAATGGTTCATACCATGTATAAGTTTGGTGTTGATGATGCTATGCGAGTTTTT
75189890 AAATGTAAATATAATGCTTTGGA
326 AAATGTAAATATAATGCTTTGGA
* * *
75189913 TTACATAATTTCTTTTATATTATAACATTAGTTATAGAAATGCTATTGAGTTGATTACTCAGCGT
1 TTACATAATTTATTTTATATTATAACATTAGTTATAGAAATGCTACTGAGTTGATTACTCAACGT
* *
75189978 TCGGTTTGTCTTCCGTGTGCAGGTTAGGTTCAATCGTGTGAACTCATTATTATTAGCATCCAACA
66 TCGGTTTGTCTTCCGTGTGCAAGTTAGGTTCAATCGTGTGAACTCATTATTACTAGCATCCAACA
75190043 GAAAATCCTGTATTCATCTAATTGGTGAAACTTTTGTTAATCTCGTTGGCATGTACCTATAGGAT
131 GAAAATCCTGTATTCATCTAATT-GTGAAACTTTTGTTAATCTCGTTGGCATGTACCTATAGGAT
*
75190108 TTTATGTTATATTCTAGTTAGTTAGAGAATTAATTCATACTTCGAGATGTTTTATAAATAGGCAC
195 TTTATGTTATATTCTACTTAGTTAGAGAATTAATTCATACTTCGAGATGTTTTATAAATAGGCAC
*
75190173 ATATGATAGTTGTTAATGGTTCGTACCATGTATAAGTTTGGTGTTGATGATGCTATGCGAGTTTT
260 ATATGATAGTTGTTAATGGTTCATACCATGTATAAGTTTGGTGTTGATGATGCTATGCGAGTTTT
75190238 TAAATGTAAATATAATGCTTTGGA
325 TAAATGTAAATATAATGCTTTGGA
75190262 TT
1 TT
75190264 TGAATTAATA
Statistics
Matches: 334, Mismatches: 16, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
348 144 0.43
349 190 0.57
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (348 bp):
TTACATAATTTATTTTATATTATAACATTAGTTATAGAAATGCTACTGAGTTGATTACTCAACGT
TCGGTTTGTCTTCCGTGTGCAAGTTAGGTTCAATCGTGTGAACTCATTATTACTAGCATCCAACA
GAAAATCCTGTATTCATCTAATTGTGAAACTTTTGTTAATCTCGTTGGCATGTACCTATAGGATT
TTATGTTATATTCTACTTAGTTAGAGAATTAATTCATACTTCGAGATGTTTTATAAATAGGCACA
TATGATAGTTGTTAATGGTTCATACCATGTATAAGTTTGGTGTTGATGATGCTATGCGAGTTTTT
AAATGTAAATATAATGCTTTGGA
Found at i:75194850 original size:40 final size:41
Alignment explanation
Indices: 75194761--75194910 Score: 221
Period size: 41 Copynumber: 3.7 Consensus size: 41
75194751 CGCTGACTCA
* *
75194761 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
75194802 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
75194842 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
75194883 AAAAGCCCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
75194911 TAAACCCCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 32 0.34
41 62 0.66
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:75202063 original size:41 final size:40
Alignment explanation
Indices: 75201950--75202095 Score: 157
Period size: 41 Copynumber: 3.6 Consensus size: 40
75201940 CGCTGACTCA
* *
75201950 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTC-GATTATGACACTGGCTC
* * * * * * * *
75201991 GAAGGCCCTTTGAAACTAGGTTCGGTTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGATTATGACACTGGCTC
* *
75202031 AAAAGCCCTTCGAGAGCAAGCTCGAATTATGACACTGGATC
1 AAAAGCCCTTCGAGACCAAGCTCG-ATTATGACACTGGCTC
*
75202072 AAAAGCCCTTTGAGACCAAGCTCG
1 AAAAGCCCTTCGAGACCAAGCTCG
75202096 GATTTAAACC
Statistics
Matches: 82, Mismatches: 22, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
40 30 0.37
41 52 0.63
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.21
Consensus pattern (40 bp):
AAAAGCCCTTCGAGACCAAGCTCGATTATGACACTGGCTC
Found at i:75204164 original size:27 final size:27
Alignment explanation
Indices: 75204125--75204196 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 27
75204115 TTAGAATACT
*
75204125 TTAGTTTACTAAAATTACTGAAATACCC
1 TTAGTTT-GTAAAATTACTGAAATACCC
*
75204153 TTAGTTTGTAAAAATACTGAAATACCC
1 TTAGTTTGTAAAATTACTGAAATACCC
*
75204180 -TCGATTTGTAAAATTAC
1 TTAG-TTTGTAAAATTAC
75204197 CAAAGTACCC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
26 2 0.05
27 30 0.77
28 7 0.18
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (27 bp):
TTAGTTTGTAAAATTACTGAAATACCC
Found at i:75204205 original size:27 final size:27
Alignment explanation
Indices: 75204134--75204224 Score: 96
Period size: 27 Copynumber: 3.4 Consensus size: 27
75204124 TTTAGTTTAC
* *
75204134 TAAAATTACTGAAATACCCT-TAGTTTG
1 TAAAATTACTCAAATACCCTCGA-TTTG
* *
75204161 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTCAAATACCCTCGATTTG
*
75204188 TAAAATTAC-CAAAGTACCCTCGATTTA
1 TAAAATTACTCAAA-TACCCTCGATTTG
*
75204215 TAGAATTACT
1 TAAAATTACT
75204225 GTTTTACCCC
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
26 3 0.05
27 51 0.93
28 1 0.02
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
TAAAATTACTCAAATACCCTCGATTTG
Found at i:75204232 original size:27 final size:27
Alignment explanation
Indices: 75204202--75204414 Score: 223
Period size: 27 Copynumber: 7.9 Consensus size: 27
75204192 ATTACCAAAG
* *
75204202 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * ** * *
75204229 TACCCCCGATTTCCCTAATAACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
75204256 TACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
*
75204283 TACCCTCGACTTACAGAATTAC-AGTTT
1 TACCCTCGATTTACAGAATTACTA-TTT
*
75204310 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
75204337 TACCCTCAATTTATAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
75204364 TACCCTTGATTTACAGAATTACTCTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
75204391 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
75204415 AAATACCCTT
Statistics
Matches: 152, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
27 151 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:75204233 original size:54 final size:54
Alignment explanation
Indices: 75204175--75204412 Score: 228
Period size: 54 Copynumber: 4.4 Consensus size: 54
75204165 AATACTGAAA
** *** *
75204175 TACCCTCGATTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
* * ** * * *
75204229 TACCCCCGATTTCCCTAATAACCATTTTACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACT-GTTT
* * **
75204283 TACCCTCGACTTACAGAATTA-CAGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCA-TTTTACCCTCGATTTACAGAATTACTGTTT
* * * ** * *
75204337 TACCCTCAATTTATAGAATTATTATTTTACCCTTGATTTACAGAATTACTCTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
75204391 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
75204413 TAAAATACCC
Statistics
Matches: 147, Mismatches: 33, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
53 3 0.02
54 143 0.97
55 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:75204411 original size:81 final size:81
Alignment explanation
Indices: 75204202--75204412 Score: 269
Period size: 81 Copynumber: 2.6 Consensus size: 81
75204192 ATTACCAAAG
* * * ** * *
75204202 TACCCTCGATTTATAGAATTACTGTTTTACCCCCGATTTCCCTAATAACCATTTTACCCCCGATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCCCAATT
* *
75204267 TACATAATTATCGTTT
66 TACAGAATTATCATTT
* * * *
75204283 TACCCTCGACTTACAGAATTACAGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCCCAATT
* *
75204348 TATAGAATTATTATTT
66 TACAGAATTATCATTT
* *
75204364 TACCCTTGATTTACAGAATTACTCTTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTAC
75204413 TAAAATACCC
Statistics
Matches: 111, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 111 1.00
ACGTcount: A:0.29, C:0.25, G:0.07, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCCCAATT
TACAGAATTATCATTT
Found at i:75204421 original size:27 final size:27
Alignment explanation
Indices: 75204364--75204558 Score: 117
Period size: 27 Copynumber: 7.1 Consensus size: 27
75204354 ATTATTATTT
* ****
75204364 TACCCTTGATTTACAGAATTACTCTTT
1 TACCCTTGATTTACAAAATTACTAAAA
*
75204391 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* *** **
75204418 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* ** * *
75204445 TACCCTTAATTTGTAAAATTTCCAAAA
1 TACCCTTGATTTACAAAATTACTAAAA
* * *
75204472 TACCCCTGCTTTACAAAGTTAC-AGAAA
1 TACCCTTGATTTACAAAATTACTA-AAA
75204499 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTGA-TTTAC--AAAATTACTA-AAA
* * *
75204528 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTACAAAATTACTAAAA
75204555 TACC
1 TACC
75204559 TTTGGTTTGT
Statistics
Matches: 130, Mismatches: 31, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
26 1 0.01
27 103 0.79
28 7 0.05
29 19 0.15
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.34
Consensus pattern (27 bp):
TACCCTTGATTTACAAAATTACTAAAA
Found at i:75204463 original size:54 final size:55
Alignment explanation
Indices: 75204405--75204558 Score: 143
Period size: 54 Copynumber: 2.8 Consensus size: 55
75204395 CTCGATTTAC
** * *
75204405 AAAATTACTAAAATACCCTTGGTTTGTGAAATTACCGAAATACCCTT-AATTTGT-
1 AAAATTACTAAAATACCCTTGGTTT-AAAAATTACAGAAATACCCTTGAATTTCTA
* * * * * *
75204459 AAAATTTCCAAAATACCCCTGCTTTACAAAGTTACAGAAATACCCTTGACTTTCTA
1 AAAATTACTAAAATACCCTTGGTTTA-AAAATTACAGAAATACCCTTGAATTTCTA
* *
75204515 AAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACC
1 AAAATTACTA-AAATACCCTTGGTTTA-AAAATTACAGAAATACC
75204559 TTTGGTTTGT
Statistics
Matches: 79, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
54 38 0.48
55 6 0.08
56 35 0.44
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (55 bp):
AAAATTACTAAAATACCCTTGGTTTAAAAATTACAGAAATACCCTTGAATTTCTA
Found at i:75204650 original size:27 final size:27
Alignment explanation
Indices: 75204607--75204680 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
75204597 AAATGACTAA
*
75204607 AATACCCCTATTA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
75204634 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
*
75204661 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
75204681 TGATGAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:75205516 original size:26 final size:26
Alignment explanation
Indices: 75205487--75205636 Score: 230
Period size: 26 Copynumber: 5.8 Consensus size: 26
75205477 GAGGAAGTGC
75205487 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
75205513 AAAATGGCTTATGCCCCAGTTTAACG
1 AAAAGGGCTTATGCCCCAGTTTACCG
75205539 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
75205565 AAAAGGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
75205591 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
75205617 AAAAGGGCTT-TTCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
75205637 ATTAAAGAGG
Statistics
Matches: 111, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 8 0.07
26 103 0.93
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:75205840 original size:42 final size:42
Alignment explanation
Indices: 75205781--75205872 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
75205771 TAGTCTCCCC
* ** *
75205781 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
75205823 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
75205865 AAATGGGC
1 AAATGGGC
75205873 CTATGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:75205931 original size:31 final size:31
Alignment explanation
Indices: 75205896--75205974 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
75205886 CGTTTACAGT
75205896 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
* *
75205927 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
75205958 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
75205975 AATCATTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:75208706 original size:39 final size:41
Alignment explanation
Indices: 75208605--75208787 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 41
75208595 TCGAATGATG
* *
75208605 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA
*
75208645 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATA
* *
75208685 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
75208724 TCCGGGTTAAGT--CGAAGGCATTTGTGCGAGTTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
* *
75208762 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75208788 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 11, Indels: 20
0.80 0.07 0.13
Matches are distributed among these distances:
37 1 0.01
38 32 0.26
39 34 0.28
40 42 0.34
41 12 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATA
Found at i:75208809 original size:77 final size:77
Alignment explanation
Indices: 75208659--75208810 Score: 193
Period size: 77 Copynumber: 2.0 Consensus size: 77
75208649 GACTAAGATC
* **
75208659 CGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
75208724 TCCGGGTTAAGT
66 TCCGGGTTAAGT
* * *
75208736 CGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCT
1 CGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CT
*
75208799 ATATCC-GGTTAA
63 AAATCCGGGTTAA
75208811 ATTCCGAAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
76 2 0.03
77 39 0.60
78 24 0.37
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (77 bp):
CGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAGT
Found at i:75216950 original size:43 final size:43
Alignment explanation
Indices: 75216903--75217059 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
75216893 GTGTTCTCAT
* *
75216903 GTAAGACCTCGTCTGGGACGTTGGCATTAATATGTGATTTCGA
1 GTAAGACCTCGTCTAGGACATTGGCATTAATATGTGATTTCGA
*
75216946 GTAAGACCAT-GTCTAGGACATTGGCATCATAAT-TGTGA-TTCGT
1 GTAAGACC-TCGTCTAGGACATTGGCAT--TAATATGTGATTTCGA
* * ** *
75216989 GTAAGACC-CTGTCTGGGACAGTGGCATCGACATGTGATTTC-A
1 GTAAGACCTC-GTCTAGGACATTGGCATTAATATGTGATTTCGA
*
75217031 TGTAAGACCACGTCTAGGACATTGGCATT
1 -GTAAGACCTCGTCTAGGACATTGGCATT
75217060 GTATGATATG
Statistics
Matches: 93, Mismatches: 12, Indels: 18
0.76 0.10 0.15
Matches are distributed among these distances:
41 1 0.01
42 5 0.05
43 76 0.82
44 7 0.08
45 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
GTAAGACCTCGTCTAGGACATTGGCATTAATATGTGATTTCGA
Found at i:75219301 original size:15 final size:16
Alignment explanation
Indices: 75219281--75219310 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75219271 GTTTATTGTG
75219281 AAAAT-AAAAATAAAA
1 AAAATAAAAAATAAAA
75219296 AAAATAAAAAATAAA
1 AAAATAAAAAATAAA
75219311 GAACACACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAATAAAAAATAAAA
Found at i:75224323 original size:18 final size:18
Alignment explanation
Indices: 75224302--75224347 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
75224292 AAAGTACTTA
75224302 AAAAAGATAAATAAAAAT
1 AAAAAGATAAATAAAAAT
75224320 -AAAAG-TGGAAATAAAAAT
1 AAAAAGAT--AAATAAAAAT
75224338 AAAAA-ATAAA
1 AAAAAGATAAA
75224348 AAATCTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 9
0.73 0.00 0.27
Matches are distributed among these distances:
16 1 0.04
17 8 0.33
18 10 0.42
19 5 0.21
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (18 bp):
AAAAAGATAAATAAAAAT
Found at i:75231349 original size:20 final size:20
Alignment explanation
Indices: 75231324--75231362 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
75231314 AACTTGCAAC
75231324 ATACCATAATCTTTCACAAA
1 ATACCATAATCTTTCACAAA
* *
75231344 ATACCATAGTTTTTCACAA
1 ATACCATAATCTTTCACAA
75231363 CTTAAACATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.23, G:0.03, T:0.33
Consensus pattern (20 bp):
ATACCATAATCTTTCACAAA
Found at i:75231560 original size:42 final size:42
Alignment explanation
Indices: 75231453--75231560 Score: 130
Period size: 43 Copynumber: 2.5 Consensus size: 42
75231443 ATACTAATGT
*
75231453 CATATCCCAGATATGGT-TTGACATGGGATCTCATATAGATGC
1 CATATCCCAGATATGGTCTT-ACATGAGATCTCATATAGATGC
* * * *
75231495 CAATAGCCCAGCTATGCTCTTACATGA-AGTCTCATATTGATGC
1 C-ATATCCCAGATATGGTCTTACATGAGA-TCTCATATAGATGC
75231538 CATATCCCAGATATGGTCTTACA
1 CATATCCCAGATATGGTCTTACA
75231561 CGTAAGCTCA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
42 21 0.38
43 32 0.58
44 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGAGATCTCATATAGATGC
Found at i:75233705 original size:41 final size:41
Alignment explanation
Indices: 75233648--75233730 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
75233638 CCGATCAAAA
**
75233648 CATAACATGTAGCTTACATTTATCAACCTCAAGCAATCATT
1 CATAACACATAGCTTACATTTATCAACCTCAAGCAATCATT
75233689 CATAACACATAGCTTACATTTATCAACCTCAAGCAATCATT
1 CATAACACATAGCTTACATTTATCAACCTCAAGCAATCATT
75233730 C
1 C
75233731 TCATACATCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (41 bp):
CATAACACATAGCTTACATTTATCAACCTCAAGCAATCATT
Found at i:75237000 original size:30 final size:31
Alignment explanation
Indices: 75236957--75237019 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
75236947 CCTTTTCATA
75236957 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
**
75236988 TTTCAT-ATTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
75237018 TT
1 TT
75237020 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:75237263 original size:23 final size:23
Alignment explanation
Indices: 75237233--75237305 Score: 137
Period size: 23 Copynumber: 3.1 Consensus size: 23
75237223 CCTAGCCTCT
75237233 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75237256 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
75237279 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
75237303 TTT
1 TTT
75237306 TGCACTTCCT
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
23 26 0.53
24 23 0.47
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:75237285 original size:47 final size:48
Alignment explanation
Indices: 75237212--75237305 Score: 156
Period size: 47 Copynumber: 2.0 Consensus size: 48
75237202 GCTTTATCAT
*
75237212 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTA
75237260 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
75237306 TGCACTTCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 32 0.73
48 12 0.27
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (48 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTA
Found at i:75237288 original size:24 final size:24
Alignment explanation
Indices: 75237212--75237306 Score: 149
Period size: 24 Copynumber: 4.0 Consensus size: 24
75237202 GCTTTATCAT
*
75237212 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
75237237 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
75237260 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
75237284 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
75237307 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
23 23 0.34
24 32 0.48
25 12 0.18
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:75237378 original size:9 final size:9
Alignment explanation
Indices: 75237364--75237420 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
75237354 ATCTCGTGTG
75237364 CATATCATA
1 CATATCATA
*
75237373 CATATCATGTG
1 CATATCA--TA
75237384 CATATCATA
1 CATATCATA
* *
75237393 CATGTCATGTG
1 CATATCA--TA
75237404 CATATCATA
1 CATATCATA
75237413 CATATCAT
1 CATATCAT
75237421 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:75237383 original size:20 final size:20
Alignment explanation
Indices: 75237360--75237422 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
75237350 GAACATCTCG
75237360 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
75237380 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
75237400 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
75237420 TGT
1 TGT
75237423 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:75245047 original size:31 final size:31
Alignment explanation
Indices: 75245004--75245067 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
75244994 CCTTTTCATA
75245004 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
75245035 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
75245066 TT
1 TT
75245068 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:75245304 original size:23 final size:24
Alignment explanation
Indices: 75245273--75245398 Score: 206
Period size: 23 Copynumber: 5.4 Consensus size: 24
75245263 TTGGAGGCCT
75245273 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
75245297 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
75245321 AG-CC-TTTAATAACTGGGGTATA
1 AGCCCTTTTAATAACTGGGGCATA
75245343 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
75245367 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
75245390 AGCCCTTTT
1 AGCCCTTTT
75245399 GCACTTCCTC
Statistics
Matches: 96, Mismatches: 2, Indels: 8
0.91 0.02 0.08
Matches are distributed among these distances:
22 19 0.20
23 45 0.47
24 32 0.33
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:75245355 original size:46 final size:47
Alignment explanation
Indices: 75245280--75245398 Score: 215
Period size: 47 Copynumber: 2.6 Consensus size: 47
75245270 CCTAGCCTCT
75245280 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAG-CC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
75245325 TTTAATAACTGGGGTATAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
75245372 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
75245399 GCACTTCCTC
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
45 15 0.21
46 27 0.39
47 28 0.40
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:75245470 original size:9 final size:9
Alignment explanation
Indices: 75245456--75245512 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
75245446 ATCTCGTGTG
75245456 CATATCATA
1 CATATCATA
*
75245465 CATATCATGTG
1 CATATCA--TA
75245476 CATATCATA
1 CATATCATA
* *
75245485 CATGTCATGTG
1 CATATCA--TA
75245496 CATATCATA
1 CATATCATA
75245505 CATATCAT
1 CATATCAT
75245513 TTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:75245475 original size:20 final size:20
Alignment explanation
Indices: 75245452--75245512 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
75245442 GAACATCTCG
75245452 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
75245472 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
75245492 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
75245512 T
1 T
75245513 TTTTATCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:75254529 original size:38 final size:38
Alignment explanation
Indices: 75254487--75254636 Score: 167
Period size: 38 Copynumber: 3.9 Consensus size: 38
75254477 ATTTGATGCG
** *
75254487 TATCCGGGCTTAAAGGTTGCA-GCTTCGTGTTGGTATTA
1 TATCCGGG-TTAAAGCCTGCAGGCTTCGTGCTGGTATTA
*
75254525 TATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAAGCCTGCAGGCTTCGTGCTGGTATTA
* * *
75254563 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
1 TATCCGGGTTAAAGCCTGCAGGCTTCGTGCTGGTATTA
* * * *
75254601 TATTCGAGCTTAAAGTCCTGCAGGTTTTGTGCTGGT
1 TATCCG-GGTTAAAG-CCTGCAGGCTTCGTGCTGGT
75254637 GACTGGATTC
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
37 9 0.09
38 65 0.67
39 6 0.06
40 17 0.18
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (38 bp):
TATCCGGGTTAAAGCCTGCAGGCTTCGTGCTGGTATTA
Found at i:75254635 original size:40 final size:38
Alignment explanation
Indices: 75254504--75254636 Score: 169
Period size: 38 Copynumber: 3.5 Consensus size: 38
75254494 GCTTAAAGGT
* *
75254504 TGCA-GCTTCGTGTTGGTATTATATCCGGGTTAAATCC
1 TGCAGGCTTAGTGCTGGTATTATATCCGGGTTAAATCC
*
75254541 TGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCC
1 TGCAGGCTTAGTGCTGGTATTATATCCGGGTTAAATCC
* * *
75254579 CGCAGGCTTAGTGCTGGTATTATATTCGAGCTTAAAGTCC
1 TGCAGGCTTAGTGCTGGTATTATATCCG-GGTTAAA-TCC
* *
75254619 TGCAGGTTTTGTGCTGGT
1 TGCAGGCTTAGTGCTGGT
75254637 GACTGGATTC
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
37 4 0.05
38 57 0.67
39 6 0.07
40 18 0.21
ACGTcount: A:0.18, C:0.19, G:0.27, T:0.36
Consensus pattern (38 bp):
TGCAGGCTTAGTGCTGGTATTATATCCGGGTTAAATCC
Found at i:75260037 original size:47 final size:47
Alignment explanation
Indices: 75259970--75260087 Score: 175
Period size: 47 Copynumber: 2.5 Consensus size: 47
75259960 TCCATAAGTT
*
75259970 AACTTGGACTCAACTCAACGAGTTCGGATGCCT-AGTTACATCTCACA
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTGA-TTACATCTCACA
* * * *
75260017 AACTCGGACTCAAGTTAACGAGTTCGGATGCCTGATTATATCTCACG
1 AACTCGGACTCAACTCAACGAGTTCGGATGCCTGATTACATCTCACA
75260064 AACTCGGACTCAACTCAACGAGTT
1 AACTCGGACTCAACTCAACGAGTT
75260088 TGGAACTCAA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
47 62 0.98
48 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (47 bp):
AACTCGGACTCAACTCAACGAGTTCGGATGCCTGATTACATCTCACA
Found at i:75263864 original size:40 final size:40
Alignment explanation
Indices: 75263815--75263955 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
75263805 CGGATGTAAC
75263815 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
75263855 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * ** ** *
75263895 AACTAGCAC-AATTGGCTTC-GGATCTTAGTCCGAATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
* *
75263935 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
75263956 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
39 5 0.06
40 77 0.91
41 3 0.04
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.25
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:75263956 original size:40 final size:40
Alignment explanation
Indices: 75263889--75263971 Score: 130
Period size: 40 Copynumber: 2.1 Consensus size: 40
75263879 TTAACCCGGT
* *
75263889 TATAATAACTAGCACAATTGGCTTCGGATCTTAGTCCGAA
1 TATAATAACTAGCACAAATGCCTTCGGATCTTAGTCCGAA
* *
75263929 TATAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCGGA
1 TATAATAACTAGCACAAATGCCTTCGGATCTTAGTCCGAA
75263969 TAT
1 TAT
75263972 CATCCGAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (40 bp):
TATAATAACTAGCACAAATGCCTTCGGATCTTAGTCCGAA
Found at i:75276151 original size:30 final size:29
Alignment explanation
Indices: 75276114--75276184 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 29
75276104 AAGCTTTGGC
75276114 ATTAACTAGCTTTGGCACTAAGTGTGCGA
1 ATTAACTAGCTTTGGCACTAAGTGTGCGA
*
75276143 TTTAAACTAGCTTTGGCACTAAGTGTGCGA
1 ATT-AACTAGCTTTGGCACTAAGTGTGCGA
75276173 ATTAACTAGCTT
1 ATTAACTAGCTT
75276185 CGGATACTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
29 11 0.28
30 28 0.72
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (29 bp):
ATTAACTAGCTTTGGCACTAAGTGTGCGA
Found at i:75276620 original size:48 final size:48
Alignment explanation
Indices: 75276494--75276857 Score: 615
Period size: 48 Copynumber: 7.6 Consensus size: 48
75276484 CAAGATAAAT
* * *
75276494 ATATATATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATAAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75276542 ATATG--TATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75276588 ATATGTATGTGTGGTAAAGCCGAATGGCTAATGTGAAATATCTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75276636 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75276684 ATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75276732 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75276780 ATATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75276828 ATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
75276858 GTGATTCGGC
Statistics
Matches: 300, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
46 43 0.14
48 257 0.86
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75277080 original size:37 final size:37
Alignment explanation
Indices: 75277030--75277132 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
75277020 GGAAATATAT
*
75277030 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
75277067 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75277104 TCCAGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
75277133 GGACTATTCG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75278461 original size:40 final size:40
Alignment explanation
Indices: 75278413--75278599 Score: 279
Period size: 40 Copynumber: 4.7 Consensus size: 40
75278403 AGTTATATAG
75278413 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
75278453 CTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
75278493 CCAGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
* * * * *
75278533 CCAGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
*
75278573 CCGGGCTAA-ACCTCGAAG-GCATTCGTG
1 CCGGGCTAAGTCC-CGAAGAGCATTCGTG
75278600 GTGGAATTAT
Statistics
Matches: 136, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 10 0.07
40 126 0.93
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATGT
Found at i:75278679 original size:29 final size:29
Alignment explanation
Indices: 75278609--75278717 Score: 98
Period size: 29 Copynumber: 3.8 Consensus size: 29
75278599 GGTGGAATTA
* * *
75278609 TGAGGCACTGTGTGTGCAAGTTC-TTCAAT
1 TGAGGCACTATGTGTGCGAGTTCGGT-AAT
* *
75278638 CGA-GCGCTATGTGTGCGAGATT-GGTAAT
1 TGAGGCACTATGTGTGCGAG-TTCGGTAAT
**
75278666 TGAGGCACTATGTGTGCGAGTTCTTTAAT
1 TGAGGCACTATGTGTGCGAGTTCGGTAAT
* *
75278695 TGAGGCACTTTGTGTACGAGTTC
1 TGAGGCACTATGTGTGCGAGTTC
75278718 TATAATCGAG
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
28 20 0.31
29 45 0.69
ACGTcount: A:0.20, C:0.16, G:0.30, T:0.34
Consensus pattern (29 bp):
TGAGGCACTATGTGTGCGAGTTCGGTAAT
Found at i:75278718 original size:29 final size:29
Alignment explanation
Indices: 75278662--75278737 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 29
75278652 GCGAGATTGG
* *
75278662 TAATTGAGGCACTATGTGTGCGAGTTCTT
1 TAATTGAGGCACTATGTGTACGAGTTCTA
*
75278691 TAATTGAGGCACTTTGTGTACGAGTTCTA
1 TAATTGAGGCACTATGTGTACGAGTTCTA
* *
75278720 TAATCGA-GCGCTATGTGT
1 TAATTGAGGCACTATGTGT
75278738 GTGCGAAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 9 0.22
29 32 0.78
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.37
Consensus pattern (29 bp):
TAATTGAGGCACTATGTGTACGAGTTCTA
Found at i:75281837 original size:46 final size:46
Alignment explanation
Indices: 75281787--75281960 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
75281777 TGGTTGAGCA
75281787 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
75281833 TCCGAACTCGTTAAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
75281878 CATCCGAACTCGTTGAGCTGAGTTCGAGTTCAGTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
75281926 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTAT
75281961 TGGCGGGTTA
Statistics
Matches: 102, Mismatches: 16, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 7 0.07
46 54 0.53
47 26 0.25
48 4 0.04
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75281943 original size:93 final size:93
Alignment explanation
Indices: 75281784--75281954 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
75281774 GGATGGTTGA
* * *
75281784 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTAAGT
75281849 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
75281877 GCATCCGAACTCGTTGAGCTGAGTTCGAGTTCAGTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTAAG
75281941 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
75281955 ACTTATTGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 4 0.06
93 67 0.94
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTAAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:75288143 original size:49 final size:49
Alignment explanation
Indices: 75288083--75288370 Score: 417
Period size: 49 Copynumber: 6.0 Consensus size: 49
75288073 ATGATAGTAA
*
75288083 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGG
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
75288132 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
* *
75288181 GCCAAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAG
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
75288228 GCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAG
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
* * * *
75288275 GCCTAATGGCCGATGTGATGAATGTGGAAGTCTATATATATGTGAGAGG
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
* * * * * *
75288324 GCCGAGTGGCCAACGTGACGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
75288371 TCTCGAAGGG
Statistics
Matches: 218, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
47 97 0.44
48 1 0.00
49 120 0.55
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (49 bp):
GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
Found at i:75288253 original size:96 final size:96
Alignment explanation
Indices: 75288087--75288370 Score: 396
Period size: 96 Copynumber: 3.0 Consensus size: 96
75288077 TAGTAAGCCT
75288087 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCTAATGGCCGATGTGATG
75288152 AATGTGAAAGTGTATATATATGTGATAAGGCCA
64 AATGTGAAAGTGTATATATATGTGATAAGGCCA
* *
75288185 AATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAA
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAA
*
75288250 TGTGAAAGTG--TATATATGTGATAAGGCCT
66 TGTGAAAGTGTATATATATGTGATAAGGCCA
* * * * * * * *
75288279 AATGGCCGATGTGATGAATGTGGAAGTCTATATATATGTGAGAGGGCCGAGTGGCCAACGTGACG
1 AATGGCCGATGTGATGAATGTGAAAG--TGTATATATGTGATAGGGCCTAATGGCCGATGTGATG
*
75288344 GATGTGAAAGTGTATA-A-ATGTGATAAG
64 AATGTGAAAGTGTATATATATGTGATAAG
75288371 TCTCGAAGGG
Statistics
Matches: 168, Mismatches: 14, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
94 43 0.26
96 94 0.56
97 1 0.01
98 30 0.18
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (96 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATATGTGATAAGGCCA
Found at i:75288545 original size:37 final size:37
Alignment explanation
Indices: 75288489--75288567 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
75288479 CCGATCTCTA
* * *
75288489 AAGACCCGATGACTACGTGTGGGGATTTTGTCCAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
* *
75288526 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
75288563 AAGAC
1 AAGAC
75288568 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:75290510 original size:29 final size:29
Alignment explanation
Indices: 75290475--75290548 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
75290465 GTTGTGAGAT
* *
75290475 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
75290504 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
75290533 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75290549 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:75290926 original size:39 final size:39
Alignment explanation
Indices: 75290862--75291060 Score: 236
Period size: 39 Copynumber: 5.1 Consensus size: 39
75290852 ATTCGAATGA
*
75290862 TGTCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATG
1 TGTCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGTGATG
75290902 TGTCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATG
1 TGTCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATG
* * * *
75290941 TATCCGGGCTAAGTTCGAAGAGCATTCGTGCTAGTGATA
1 TGTCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATG
* * ** * * * *
75290980 TATCCGTGCTAAACCCGAAGAGCATTCGTGCTGGTGTTA
1 TGTCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATG
* * * *
75291019 TGTCCGGGCTAGGTCCGAAGAGCAATCATGCTGGTGACG
1 TGTCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATG
75291058 TGT
1 TGT
75291061 ATTCGGGCCT
Statistics
Matches: 138, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 125 0.91
40 13 0.09
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.27
Consensus pattern (39 bp):
TGTCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATG
Found at i:75294842 original size:49 final size:49
Alignment explanation
Indices: 75294773--75295161 Score: 612
Period size: 49 Copynumber: 8.1 Consensus size: 49
75294763 GAAATGATAG
75294773 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
75294822 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
75294871 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
75294919 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
75294968 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
75295015 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
75295062 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * * *
75295111 GAGGGCCGAGTGGCCAACGTGACGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
75295158 TAAG
1 TAAG
75295162 TCCCGAAGGG
Statistics
Matches: 317, Mismatches: 20, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
47 98 0.31
48 48 0.15
49 171 0.54
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:75294941 original size:97 final size:98
Alignment explanation
Indices: 75294773--75295161 Score: 630
Period size: 97 Copynumber: 4.0 Consensus size: 98
75294763 GAAATGATAG
75294773 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
75294838 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATATGTGA
75294871 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
75294935 ATGTGATGAATGTGAAAGTGTATATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATATGTGA
* * *
75294968 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
75295031 ATGTGATGAATGTGAAAGTG--TATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * *
75295062 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGAGAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
* * *
75295127 ACGTGACGGATGTGAAAGTGTATA-A-ATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATATGTGA
75295158 TAAG
1 TAAG
75295162 TCCCGAAGGG
Statistics
Matches: 272, Mismatches: 14, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
94 45 0.17
96 93 0.34
97 98 0.36
98 36 0.13
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (98 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:75295337 original size:37 final size:37
Alignment explanation
Indices: 75295279--75295357 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
75295269 CCGAGCTCTA
* * *
75295279 AAGACCCGATGACTACATGTGGGGATTTTGTCCAGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCAGGT
* * *
75295316 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCAGGT
75295353 AAGAC
1 AAGAC
75295358 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCAGGT
Found at i:75300434 original size:46 final size:46
Alignment explanation
Indices: 75300384--75300559 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
75300374 TGGTTGAGCA
75300384 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75300430 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
75300475 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75300523 CCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75300560 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75300542 original size:93 final size:93
Alignment explanation
Indices: 75300381--75300551 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
75300371 GGATGGTTGA
* * *
75300381 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAAT
75300446 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
75300474 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAAT
75300539 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75300552 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAAT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:75303700 original size:48 final size:48
Alignment explanation
Indices: 75303638--75303898 Score: 450
Period size: 48 Copynumber: 5.4 Consensus size: 48
75303628 TATATATGTG
* *
75303638 TGTGGTAAAGCCGAATGGCTAACGTGAAATATGTATGAGATATGTATC
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* * *
75303686 TGTGGTAAAGCCGAATGGTTAATGCGAAATATGTATGAGATATGTATG
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
75303734 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
75303782 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
75303830 TGTGGTAGAGCTGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
75303878 TGTGGTAAAGCCGAATGGCTA
1 TGTGGTAAAGCCGAATGGCTA
75303899 GTGATTCGGC
Statistics
Matches: 200, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 200 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:75304121 original size:37 final size:37
Alignment explanation
Indices: 75304071--75304173 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
75304061 GGAAATATAT
75304071 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
75304108 TCCGGGTAAGACCCGATGAGTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
75304145 TCCGGGTAAGACTCGATAACTATGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
75304174 GGACTATTCG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:75308853 original size:40 final size:40
Alignment explanation
Indices: 75308782--75308964 Score: 207
Period size: 39 Copynumber: 4.7 Consensus size: 40
75308772 GCTACTCGTT
*
75308782 CAAATGCCTT-GGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
75308821 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
75308861 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
75308900 CAAATGCCTTC--GATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
75308940 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75308965 CATCATTCGA
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
37 1 0.01
39 62 0.51
40 55 0.45
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:75308958 original size:79 final size:80
Alignment explanation
Indices: 75308782--75308964 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
75308772 GCTACTCGTT
* *
75308782 CAAATGCCTT-GGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCG
* *
75308845 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * **
75308862 CAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCGG
* *
75308924 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
75308940 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
75308965 CATCATTCGA
Statistics
Matches: 87, Mismatches: 11, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
77 2 0.02
78 27 0.31
79 51 0.59
80 7 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:75319262 original size:40 final size:40
Alignment explanation
Indices: 75319218--75319368 Score: 146
Period size: 40 Copynumber: 3.7 Consensus size: 40
75319208 AGTCAATATA
*
75319218 TGGTAATATGTATCCGGGTTAAATCCCGTAGGCTTCATGC
1 TGGTAATATGTATCCGGGTTAAATCCCGCAGGCTTCATGC
* * *
75319258 TGGTAATATGTATTCGGGTTAAATCCCGCAGGTTTCGTGC
1 TGGTAATATGTATCCGGGTTAAATCCCGCAGGCTTCATGC
* * *
75319298 TAGTAATATATATATATCCGGGTTAAGTCCCGCAGGCTT-AGTGC
1 T-G--GTA-ATATGTATCCGGGTTAAATCCCGCAGGCTTCA-TGC
*
75319342 TGGTACTA--TATCCGGGCTTAAAGTCCC
1 TGGTAATATGTATCCGGG-TTAAA-TCCC
75319369 ACAGAGTTTG
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
38 8 0.09
39 4 0.04
40 43 0.47
41 3 0.03
43 3 0.03
44 30 0.33
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (40 bp):
TGGTAATATGTATCCGGGTTAAATCCCGCAGGCTTCATGC
Found at i:75319329 original size:44 final size:44
Alignment explanation
Indices: 75319223--75319352 Score: 151
Period size: 44 Copynumber: 3.0 Consensus size: 44
75319213 ATATATGGTA
* * *
75319223 ATATGTATCCGGGTTAAATCCCGTAGGCTTCATGCTGGT-A-AT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATAT
* * *
75319265 ATGTAT-T-CGGGTTAAATCCCGCAGGTTTCGTGCTAGTAATAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATAT
* * *
75319307 ATATATATCCGGGTTAAGTCCCGCAGGCTTAGTGCTGGTACTAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATAT
75319351 AT
1 AT
75319353 CCGGGCTTAA
Statistics
Matches: 72, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
40 26 0.36
41 2 0.03
42 11 0.15
43 1 0.01
44 32 0.44
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (44 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATAT
Found at i:75327956 original size:27 final size:27
Alignment explanation
Indices: 75327926--75328081 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
75327916 TGCTATTCAC
* * *
75327926 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAG
* * *
75327953 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAG
* * *
75327980 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAG
*
75328008 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAG
** *
75328035 TCCTTTCGCACACTTAGTGCAACATAG
1 TCAATTCGCACACTTAGTGCCACATAG
75328062 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
75328082 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAG
Found at i:75328071 original size:54 final size:54
Alignment explanation
Indices: 75327931--75328082 Score: 173
Period size: 54 Copynumber: 2.8 Consensus size: 54
75327921 TTCACTCAAC
* * * *
75327931 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTACATAGTTAGAT
1 TCGCACACTTAGTGCCACATAGTC-AATCGCACACTTAGTGCTACATAGTTACAT
* * * *
75327986 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATA-TTCCTT
1 TCGCACACTTAGTGCCACATAGTCAA-TCGCACACTTAGTGCTA-CATAGTTACAT
*
75328040 TCGCACACTTAGTGCAACATAGTCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAGTC-AATCGCACACTTAGTGCT
75328083 GTACAATTTA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
54 42 0.51
55 40 0.49
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (54 bp):
TCGCACACTTAGTGCCACATAGTCAATCGCACACTTAGTGCTACATAGTTACAT
Found at i:75336043 original size:27 final size:27
Alignment explanation
Indices: 75336013--75336168 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
75336003 TGCTATTCAC
* *
75336013 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
75336040 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
75336067 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
75336095 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
75336122 TCCTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
75336149 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
75336169 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:75336084 original size:55 final size:55
Alignment explanation
Indices: 75336018--75336169 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
75336008 TTCACTCAAC
* * *
75336018 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTACAT
* ** * * *
75336073 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCCTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
* *
75336127 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
75336170 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
Found at i:75346981 original size:27 final size:25
Alignment explanation
Indices: 75346925--75346981 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
75346915 TCTCATCTGT
* *
75346925 ATTTTACCCCATCAAAATTTTGATG
1 ATTTTACCCCATCAAAAATTTGAAG
75346950 ATTTTACCCCTTAT-AAAAATTTGAAG
1 ATTTTACCCC--ATCAAAAATTTGAAG
75346976 ACTTTT
1 A-TTTT
75346982 CCCTGGTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 10 0.37
26 11 0.41
27 6 0.22
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (25 bp):
ATTTTACCCCATCAAAAATTTGAAG
Found at i:75347166 original size:18 final size:18
Alignment explanation
Indices: 75347143--75347179 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
75347133 TACAAATGGA
*
75347143 TCATTTCCATTTTAATTT
1 TCATTTCCATTTCAATTT
75347161 TCATTTCCATTTCAATTT
1 TCATTTCCATTTCAATTT
75347179 T
1 T
75347180 TGGAAACCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.19, G:0.00, T:0.59
Consensus pattern (18 bp):
TCATTTCCATTTCAATTT
Found at i:75349224 original size:6 final size:6
Alignment explanation
Indices: 75349205--75349237 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
75349195 AAATGGATCG
*
75349205 TTTCCA TTTTCA TTTCCA TTTCCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
75349238 TTGGAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (6 bp):
TTTCCA
Found at i:75353227 original size:46 final size:47
Alignment explanation
Indices: 75353143--75353307 Score: 153
Period size: 46 Copynumber: 3.5 Consensus size: 47
75353133 GACAAGAGCT
* * *
75353143 AGTGTAAGA-CATACCTGGGACATACATTGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACCATGCCTGGGACATGCATCGG-CTACGAGATGTAAGCC
* * * *
75353189 AATGTAAGA-CATGTCTGGGACATGCATCGGCTATGAGATGT--GTC
1 AGTGTAAGACCATGCCTGGGACATGCATCGGCTACGAGATGTAAGCC
* * *
75353233 AGTGTAAGACCATGTCTGGGACATGGCAGCAGC-ACGGAGATGTGAGAGCC
1 AGTGTAAGACCATGCCTGGGACAT-GCATCGGCTAC-GAGATGT-A-AGCC
75353283 AGTGTAAGACCATGCCTGGGACATG
1 AGTGTAAGACCATGCCTGGGACATG
75353308 GCGTCGGCCT
Statistics
Matches: 98, Mismatches: 13, Indels: 13
0.79 0.10 0.10
Matches are distributed among these distances:
44 10 0.10
45 17 0.17
46 45 0.46
49 1 0.01
50 25 0.26
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACCATGCCTGGGACATGCATCGGCTACGAGATGTAAGCC
Found at i:75356965 original size:38 final size:42
Alignment explanation
Indices: 75356914--75357627 Score: 447
Period size: 49 Copynumber: 15.0 Consensus size: 42
75356904 ATATACACTT
75356914 TCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
75356958 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
* *
75357005 CTTTCACATTCATCACATCGGCCATTAGGCCTTATAACATATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTAT--CACATATATA-A
*
75357054 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
* *
75357103 CTTTCACACTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACA-TTATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
* * *
75357152 CTTTCACACTCATCACATTGGCCATTAGGCCTTATCACATATATATATA
1 ---TCACA-TTATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
* * * **
75357201 CTTTCACACTCATCACATTGGCCATTCCGCCTTATCACATATATACA
1 ---TCACA-TTATCACATCGGCTATTAGGCCTTATCACATATATA-A
*
75357248 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
*
75357295 CCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
*
75357342 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
75357389 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCACATATATA-A
*
75357436 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
*
75357485 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
* * *
75357534 CTTTCACACTCATCACATCGGCCATTGGGCCTTATCACATATATATACA
1 ---TCACA-TTATCACATCGGCTATTAGGCCTTATCAC--ATATATA-A
* * *
75357583 CTTTCACACTCATCACATTGGCCATTAGGCCTTATCACATATATA
1 ---TCACA-TTATCACATCGGCTATTAGGCCTTATCACATATATA
75357628 TACTTTCACA
Statistics
Matches: 637, Mismatches: 21, Indels: 18
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 311 0.49
49 323 0.51
50 2 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (42 bp):
TCACATTATCACATCGGCTATTAGGCCTTATCACATATATAA
Found at i:75357068 original size:49 final size:47
Alignment explanation
Indices: 75356847--75357638 Score: 1233
Period size: 47 Copynumber: 16.6 Consensus size: 47
75356837 CCCTTCGGGA
* * * * *
75356847 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75356894 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75356941 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75356988 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75357035 CTTATAACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75357084 CTTATCACATATATATACACTTTCACACTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75357133 CTTATCACATATATATACACTTTCACACTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * **
75357182 CTTATCACATATATATATACTTTCACACTCATCACATTGGCCATTCCGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75357231 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75357278 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75357325 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75357372 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75357419 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75357466 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75357515 CTTATCACATATATATACACTTTCACACTCATCACATCGGCCATTGGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75357564 CTTATCACATATATATACACTTTCACACTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75357613 CTTATCACATATATATACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
75357639 CACAATTATC
Statistics
Matches: 706, Mismatches: 33, Indels: 12
0.94 0.04 0.02
Matches are distributed among these distances:
47 379 0.54
49 327 0.46
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75357674 original size:431 final size:430
Alignment explanation
Indices: 75356847--75357637 Score: 1449
Period size: 431 Copynumber: 1.8 Consensus size: 430
75356837 CCCTTCGGGA
* * * * *
75356847 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACCTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
75356912 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
75356977 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAA
131 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAA
75357042 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
196 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
75357107 CACACTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACACTCATCACATTG
261 CACACTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACACTCATCACATTG
* *
75357172 GCCATTAGGCCTTATCACATATATATATACTTTCACACTCATCACATTGGCCATTCCGCCTTATC
326 GCCATTAGGCCTTATCACA-ATATATATACTTTCACACTCATCACATTAGCCATTCCGCCATATC
75357237 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
390 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75357278 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACCTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
75357343 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
75357408 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
131 GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAA
75357473 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
196 CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
*
75357538 CACACTCATCACATCGGCCATTGGGCCTTATCACATATATATACACTTTCACACTCATCACATTG
261 CACACTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACACTCATCACATTG
75357603 GCCATTAGGCCTTATCAC-ATATATATACTTTCACA
326 GCCATTAGGCCTTATCACAATATATATACTTTCACA
75357638 TCACAATTAT
Statistics
Matches: 349, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
429 17 0.05
431 332 0.95
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (430 bp):
CTTATCACATATATACACCTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATAA
CATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
CACACTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACACTCATCACATTG
GCCATTAGGCCTTATCACAATATATATACTTTCACACTCATCACATTAGCCATTCCGCCATATCA
CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75361126 original size:40 final size:39
Alignment explanation
Indices: 75361058--75361441 Score: 502
Period size: 40 Copynumber: 9.7 Consensus size: 39
75361048 CCAGCATGAT
* * * * *
75361058 TGCTCTTCGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGCTTAGCCCGGATACATCACTAGCACGAA
* * * *
75361097 TGCTCTTCGAGGTTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCG-GGCTTAGCCCGGATACATCACTAGCACGAA
* * * *
75361137 TGCTCTTCGAGGTTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGCTTAGCCCGGATACATCACTAGCACGAA
* *
75361177 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGG-GCTTAGCCCGGATACATCACTAGCACGAA
*
75361217 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGG-CTTAGCCCGGATACATCACTAGCACGAA
*
75361257 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGG-CTTAGCCCGGATACATCACTAGCACGAA
* *
75361297 TGCTCTTCGGGACTTAACCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGG-CTTAGCCCGGATACATCACTAGCACGAA
75361337 TGCTCTTCGGGCTTAGCCCGG-TACATCACTAGCACGAA
1 TGCTCTTCGGGCTTAGCCCGGATACATCACTAGCACGAA
*
75361375 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGG-CTTAGCCCGGATACATCACTAGCACGAA
*
75361415 TGCTCTTCGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGCTTAGCCCGGATACATC
75361442 GTCGAGACCT
Statistics
Matches: 315, Mismatches: 25, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
38 31 0.10
39 41 0.13
40 243 0.77
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
TGCTCTTCGGGCTTAGCCCGGATACATCACTAGCACGAA
Found at i:75363872 original size:49 final size:47
Alignment explanation
Indices: 75363661--75364151 Score: 770
Period size: 47 Copynumber: 10.6 Consensus size: 47
75363651 CCCTTCGGGA
* * * * * *
75363661 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACT-CGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75363707 C---T-GCATAT-TACACTTTCACATTCATCACATCGG--ATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75363747 C-TATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75363792 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75363839 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75363888 CTTATCACATATATATACACTTTCACATTCATCACAT-GGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75363936 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75363983 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75364030 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75364079 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75364126 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
75364152 CACAATTATC
Statistics
Matches: 422, Mismatches: 10, Indels: 25
0.92 0.02 0.05
Matches are distributed among these distances:
39 2 0.00
40 3 0.01
41 22 0.05
42 5 0.01
43 6 0.01
44 25 0.06
45 8 0.02
46 64 0.15
47 145 0.34
48 19 0.05
49 123 0.29
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75364092 original size:96 final size:96
Alignment explanation
Indices: 75363710--75364151 Score: 782
Period size: 96 Copynumber: 4.7 Consensus size: 96
75363700 CACTCGCCTG
75363710 CATAT-TACACTTTCACATTCATCACATCGG--ATTAGGCC-TATCAC--ATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
75363769 CATTCATCACATCGG-CATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
75363799 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
75363864 CATTCATCACATCGGCCATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
75363895 CATATATATACACTTTCACATTCATCACAT-GGCCATTAGGCCTTATCAC--ATATATACACTTT
1 C--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
75363957 CACATTCATCACATCGGCCATTAGGCCTTATCA
64 CACATTCATCACATCGGCCATTAGGCCTTATCA
75363990 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
75364055 CATTCATCACATCGGCCATTAGGCCTTATCA
66 CATTCATCACATCGGCCATTAGGCCTTATCA
75364086 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA--TTCA
1 CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
75364149 CAT
66 CAT
75364152 CACAATTATC
Statistics
Matches: 341, Mismatches: 0, Indels: 19
0.95 0.00 0.05
Matches are distributed among these distances:
89 5 0.01
90 25 0.07
92 8 0.02
93 33 0.10
94 26 0.08
95 77 0.23
96 121 0.35
97 19 0.06
98 27 0.08
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCA
CATTCATCACATCGGCCATTAGGCCTTATCA
Found at i:75369880 original size:79 final size:81
Alignment explanation
Indices: 75369744--75369926 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
75369734 TCGAATGATG
* *
75369744 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
75369808 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
75369823 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
75369885 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
75369903 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
75369927 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:75369942 original size:40 final size:40
Alignment explanation
Indices: 75369745--75369928 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
75369735 CGAATGATGT
* * * *
75369745 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
75369785 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
75369825 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
75369863 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
75369904 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75369929 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:75369950 original size:79 final size:79
Alignment explanation
Indices: 75369797--75369961 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
75369787 GGACTAAGAT
* **
75369797 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
75369862 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
75369876 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
75369939 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
75369955 CCGAAGG
1 CCGAAGG
75369962 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:75378058 original size:79 final size:81
Alignment explanation
Indices: 75377922--75378104 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
75377912 TCGAATGATG
* *
75377922 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
75377986 TGTGCGAGATACTA-A
66 TGTGCGAGATACTACA
* * * *
75378001 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGATTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
75378063 TTTGTGCGAGTTACTACA
64 TTTGTGCGAGATACTACA
* *
75378081 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
75378105 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTACA
Found at i:75378113 original size:40 final size:39
Alignment explanation
Indices: 75377923--75378106 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
75377913 CGAATGATGT
* * * *
75377923 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
75377963 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
75378003 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
**
75378041 TCCGGATTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75378082 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75378107 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75378137 original size:79 final size:79
Alignment explanation
Indices: 75377961--75378139 Score: 204
Period size: 79 Copynumber: 2.3 Consensus size: 79
75377951 AAGTGACCAT
* *
75377961 ATCCGGACTAAGA-TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGATTAA-ATTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
**
75378025 GGTGCGAGTTACTAA
65 GGAACGAGTTACTAA
* * * *
75378040 ATCCGGATTAAGTCCCGAAGGCATTTGTGCGAGTTACTACA-ACCGGGCTATGTCCCGAAGGCAT
1 ATCCGGATTAAATTCCGAAGGCATTTGTGCGAGATACTA-ATACCGGGCTAAG-CCCGAAGGCAT
* *
75378104 TTGAACGAG-TAGCTAT
64 TGGAACGAGTTA-CTAA
75378120 ATCCGG-TTAAATTCCGAAGG
1 ATCCGGATTAAATTCCGAAGG
75378140 TACGTGATTT
Statistics
Matches: 84, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
79 57 0.68
80 27 0.32
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
ATCCGGATTAAATTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTG
GAACGAGTTACTAA
Found at i:75379889 original size:20 final size:20
Alignment explanation
Indices: 75379864--75379930 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
75379854 CACATACATG
*
75379864 CCCCTATTTGTACTTTGGTA
1 CCCCTATTTGTACTTAGGTA
* * * * *
75379884 CCCCTAAATTGCAGTTACGTG
1 CCCCT-ATTTGTACTTAGGTA
* *
75379905 CCCCTGTTTGTACTTCGGTA
1 CCCCTATTTGTACTTAGGTA
75379925 CCCCTA
1 CCCCTA
75379931 AATTGCACAT
Statistics
Matches: 32, Mismatches: 14, Indels: 2
0.67 0.29 0.04
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.16, C:0.31, G:0.16, T:0.36
Consensus pattern (20 bp):
CCCCTATTTGTACTTAGGTA
Found at i:75379947 original size:41 final size:41
Alignment explanation
Indices: 75379854--75379951 Score: 142
Period size: 41 Copynumber: 2.4 Consensus size: 41
75379844 TATTGAACTA
* *
75379854 CACATACATGCCCCTATTTGTACTTTGGTACCCCTAAATTG
1 CACATACGTGCCCCTATTTGTACTTCGGTACCCCTAAATTG
** *
75379895 CAGTTACGTGCCCCTGTTTGTACTTCGGTACCCCTAAATTG
1 CACATACGTGCCCCTATTTGTACTTCGGTACCCCTAAATTG
*
75379936 CACATATGTGCCCCTA
1 CACATACGTGCCCCTA
75379952 ATTATACAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.21, C:0.31, G:0.15, T:0.33
Consensus pattern (41 bp):
CACATACGTGCCCCTATTTGTACTTCGGTACCCCTAAATTG
Found at i:75380021 original size:20 final size:20
Alignment explanation
Indices: 75379996--75380054 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
75379986 CATATACATG
*
75379996 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTGGGTA
** *
75380016 CCCCTGAATGTGCTTGGGTA
1 CCCCTGTTTGTACTTGGGTA
75380036 -CCCTGTTTAG-ACTTGGGTA
1 CCCCTGTTT-GTACTTGGGTA
75380055 ATTTTGAATC
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.14, C:0.24, G:0.25, T:0.37
Consensus pattern (20 bp):
CCCCTGTTTGTACTTGGGTA
Found at i:75383879 original size:27 final size:27
Alignment explanation
Indices: 75383849--75384177 Score: 390
Period size: 27 Copynumber: 12.1 Consensus size: 27
75383839 AATTCTCTCA
*
75383849 ATTTGTAAAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
* * *
75383876 ATTTACAGAATTACCATTTTTTACCCTCT
1 ATTTATAAAATTACCA--TTTTACCCTCG
*
75383905 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
* * *
75383932 ATTTATAGAATTGCCATTTTACCCTTG
1 ATTTATAAAATTACCATTTTACCCTCG
* *
75383959 ATTTACAGAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
* *
75383986 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
* * *
75384013 ATTTATAGAATTACCGTTTTACCCTCA
1 ATTTATAAAATTACCATTTTACCCTCG
*
75384040 ATTTATAAAATTACCGTTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
* * *
75384067 ATTTATAGAATTTCTATTTTACCCTCG
1 ATTTATAAAATTACCATTTTACCCTCG
* * *
75384094 ATTTACAAAATTACCATTTTATCCTCA
1 ATTTATAAAATTACCATTTTACCCTCG
*
75384121 ATTTACAAAATTACCATTTTACCCTC-
1 ATTTATAAAATTACCATTTTACCCTCG
* * *
75384147 AGTTTACAAAATTACCGTTTTACCCTAG
1 A-TTTATAAAATTACCATTTTACCCTCG
75384175 ATT
1 ATT
75384178 GTGAAATTAC
Statistics
Matches: 267, Mismatches: 31, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
26 1 0.00
27 240 0.90
28 1 0.00
29 25 0.09
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.41
Consensus pattern (27 bp):
ATTTATAAAATTACCATTTTACCCTCG
Found at i:75384211 original size:27 final size:27
Alignment explanation
Indices: 75384169--75384307 Score: 190
Period size: 27 Copynumber: 5.1 Consensus size: 27
75384159 TACCGTTTTA
* * **
75384169 CCCTAGATTGTGAAATTACTGAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
75384196 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
75384223 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCTAGTTTGTAAAATTACCAAAATAC
* * *
75384250 CACTGGTTTGTGAAATTACCAAAATA-
1 CCCTAGTTTGTAAAATTACCAAAATAC
*
75384276 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-AGTTTGTAAAATTACCAAAATAC
75384304 CCCT
1 CCCT
75384308 GATTTACAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
26 3 0.03
27 92 0.93
28 4 0.04
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
CCCTAGTTTGTAAAATTACCAAAATAC
Found at i:75384333 original size:54 final size:54
Alignment explanation
Indices: 75384208--75384322 Score: 153
Period size: 54 Copynumber: 2.1 Consensus size: 54
75384198 CTAGTTTGTA
* * **
75384208 AAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCACTGATTTGAC
*
75384262 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTT-AC
1 AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTGAC
75384315 AAAGTTAC
1 AAA-TTAC
75384323 AGATATACCC
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
53 3 0.06
54 50 0.93
55 1 0.02
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTGAC
Found at i:75387866 original size:23 final size:23
Alignment explanation
Indices: 75387831--75387918 Score: 151
Period size: 23 Copynumber: 3.9 Consensus size: 23
75387821 TATCACAAAC
75387831 AACT-GGGCATAAGCCCTTTAAT
1 AACTGGGGCATAAGCCCTTTAAT
*
75387853 AACTGGGGCGTAAGCCCTTTAAT
1 AACTGGGGCATAAGCCCTTTAAT
*
75387876 AACTAGGGCATAAGCCCTTTAAT
1 AACTGGGGCATAAGCCCTTTAAT
75387899 AACTGGGGCATAAGCCCTTT
1 AACTGGGGCATAAGCCCTTT
75387919 TTCACTTCCT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
22 4 0.07
23 57 0.93
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.26
Consensus pattern (23 bp):
AACTGGGGCATAAGCCCTTTAAT
Found at i:75387994 original size:20 final size:20
Alignment explanation
Indices: 75387969--75388035 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
75387959 TTATGATTAC
75387969 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75387989 ATCATGTGCATATAATACAT
1 ATCATGTGCATATCATACAT
*
75388009 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75388029 ACCATGT
1 ATCATGT
75388036 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75388104 original size:25 final size:25
Alignment explanation
Indices: 75388072--75388119 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
75388062 ATACATAAAC
* * *
75388072 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGAAAAACGGTCATTTTTA
75388097 CCTAGGGGAAAAACGGTCATTTT
1 CCTAGGGGAAAAACGGTCATTTT
75388120 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGAAAAACGGTCATTTTTA
Found at i:75392105 original size:27 final size:27
Alignment explanation
Indices: 75392072--75392294 Score: 119
Period size: 27 Copynumber: 8.2 Consensus size: 27
75392062 TTGGTAAATC
75392072 TACAAACCAAGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** ** *
75392099 TGTAAACCAATAGTGTTTCTA-TAATTTT
1 TACAAACCAAGGGTATTTC-AGTAA-TTT
* * * * *
75392127 TAGAAAGTCAAAGGTATATCTA-TAACTT
1 TACAAA-CCAAGGGTATTTC-AGTAATTT
** * * **
75392155 TGTAAATCAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** *
75392182 TACAAATTAAGGGTATTTCGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* **
75392209 CACAAACC-AGTGGTATTTTGGTAATTT
1 TACAAACCAAG-GGTATTTCAGTAATTT
* * **
75392236 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
75392263 TACAAACTAGGGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
*
75392290 CACAA
1 TACAA
75392295 TTGAGGGTAA
Statistics
Matches: 154, Mismatches: 36, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
26 2 0.01
27 124 0.81
28 15 0.10
29 13 0.08
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCAGTAATTT
Found at i:75392301 original size:27 final size:27
Alignment explanation
Indices: 75392163--75392294 Score: 183
Period size: 27 Copynumber: 4.9 Consensus size: 27
75392153 TTTGTAAATC
*
75392163 AGGGGTATTTTGGTAATTTTACAAATT
1 AGGGGTATTTTGGTAATTTTACAAACT
* * * *
75392190 AAGGGTATTTCGGTAATTTCACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACT
*
75392217 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
75392244 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACT
** *
75392271 AGGGGTATTTCAGTAATTTCACAA
1 AGGGGTATTTTGGTAATTTTACAA
75392295 TTGAGGGTAA
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACT
Found at i:75392343 original size:81 final size:81
Alignment explanation
Indices: 75392173--75392339 Score: 185
Period size: 81 Copynumber: 2.1 Consensus size: 81
75392163 AGGGGTATTT
* * ***
75392173 TGGTAATTTTACAAATTAAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTA
1 TGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAGTGGTAAAATGGTAATTTTA
***
75392238 CAAACTAGGGGTATTT
66 CAAACTAGGGGTAAAA
* *** *
75392254 TGGTAATTTTACAAACTAGGGGTATTTCAGTAATTTCACAATTGAG-GGTAAAATGGTAATTTTG
1 TGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAGTGGTAAAATGGTAATTTTA
*
75392318 TAAACT-GAGGGTAAAA
66 CAAACTAG-GGGTAAAA
75392334 TGGTAA
1 TGGTAA
75392340 ATTTGTAAAT
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.01
80 30 0.42
81 40 0.56
ACGTcount: A:0.34, C:0.08, G:0.22, T:0.37
Consensus pattern (81 bp):
TGGTAATTTTACAAACTAAGGGTATTTCAGTAATTTCACAAACCAGTGGTAAAATGGTAATTTTA
CAAACTAGGGGTAAAA
Found at i:75392654 original size:27 final size:27
Alignment explanation
Indices: 75392297--75392640 Score: 512
Period size: 27 Copynumber: 12.7 Consensus size: 27
75392287 TTTCACAATT
*
75392297 GAGGGTAAAATGGTAATTTTGTAAA-C
1 GAGGGTAAAATGGTAATTCTGTAAATC
75392323 TGAGGGTAAAATGGTAAATT-TGTAAATC
1 -GAGGGTAAAATGGT-AATTCTGTAAATC
*
75392351 GAGGGTAAAATGGTAATCCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
75392378 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
75392405 GAGGGTAAAATGGTAATTTTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * * *
75392432 GAGGGTGAAACGATAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
75392459 AAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
75392486 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
75392513 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
75392540 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
75392567 GAGGGTAAAATGGTAATTCTGTAAATA
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
75392594 GAGGGTAAAAAATGGTAATTCTGTAAATT
1 GAGGGT--AAAATGGTAATTCTGTAAATC
75392623 GAGGGTAAAATGGTAATT
1 GAGGGTAAAATGGTAATT
75392641 TTACAAATTG
Statistics
Matches: 290, Mismatches: 22, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
26 3 0.01
27 256 0.88
28 5 0.02
29 26 0.09
ACGTcount: A:0.40, C:0.06, G:0.25, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:75399110 original size:46 final size:46
Alignment explanation
Indices: 75398991--75399112 Score: 174
Period size: 46 Copynumber: 2.7 Consensus size: 46
75398981 TGAGCATCCG
* * * **
75398991 AACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCC
75399037 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCC
*
75399082 AAGCTCGTTGAGTTGAGTCCGAGATCACTTA
1 AA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
75399113 GGGGCGGGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
45 3 0.04
46 66 0.96
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCC
Found at i:75411400 original size:29 final size:29
Alignment explanation
Indices: 75411361--75411439 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75411351 CTTAATAATC
*
75411361 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75411391 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75411420 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75411440 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75411899 original size:12 final size:12
Alignment explanation
Indices: 75411882--75411907 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
75411872 TGGGCATACT
75411882 TATGTATATATA
1 TATGTATATATA
75411894 TATGTATATATA
1 TATGTATATATA
75411906 TA
1 TA
75411908 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:75419628 original size:25 final size:25
Alignment explanation
Indices: 75419600--75419665 Score: 91
Period size: 25 Copynumber: 2.6 Consensus size: 25
75419590 ATATATATAG
75419600 TCGCACAC-TAGTGCTAATAATC-AAC
1 TCGCACACTTAGTGCT-ATAA-CAAAC
*
75419625 TCGCACACTTAGTGCTATTACAAAC
1 TCGCACACTTAGTGCTATAACAAAC
75419650 TCGCACACTTAGTGCT
1 TCGCACACTTAGTGCT
75419666 GCATTTAAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
24 1 0.03
25 30 0.79
26 7 0.18
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (25 bp):
TCGCACACTTAGTGCTATAACAAAC
Found at i:75419682 original size:26 final size:25
Alignment explanation
Indices: 75419601--75419690 Score: 87
Period size: 26 Copynumber: 3.6 Consensus size: 25
75419591 TATATATAGT
* *
75419601 CGCACAC-TAGTGCTAATA-ATCAACT
1 CGCACACTTAGTGCTATTACA--AACC
*
75419626 CGCACACTTAGTGCTATTACAAACT
1 CGCACACTTAGTGCTATTACAAACC
*
75419651 CGCACACTTAGTGCTGCATT-TAAACC
1 CGCACACTTAGTGCT--ATTACAAACC
75419677 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75419691 CAATCTCACA
Statistics
Matches: 58, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
25 26 0.45
26 28 0.48
27 4 0.07
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (25 bp):
CGCACACTTAGTGCTATTACAAACC
Found at i:75421629 original size:46 final size:46
Alignment explanation
Indices: 75421576--75421748 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
75421566 TGGTTGAGCA
75421576 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
* *
75421622 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GA-T-GTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCG-AA-T--G
* *
75421667 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
* *
75421715 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75421749 GGGGTGGGTT
Statistics
Matches: 108, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 3 0.03
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 2 0.02
51 2 0.02
52 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATG
Found at i:75421732 original size:93 final size:93
Alignment explanation
Indices: 75421573--75421743 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
75421563 GGATGGTTGA
* * *
75421573 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75421638 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75421666 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75421731 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75421744 ACTTAGGGGT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Done.