Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 223 of 345
Found at i:75429151 original size:46 final size:46
Alignment explanation
Indices: 75429101--75429273 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
75429091 TGGTTGAGCA
75429101 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75429147 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75429192 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75429240 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75429274 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75429257 original size:93 final size:93
Alignment explanation
Indices: 75429098--75429268 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75429088 GGATGGTTGA
* *
75429098 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75429163 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75429191 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75429256 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75429269 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75430814 original size:46 final size:45
Alignment explanation
Indices: 75430761--75430933 Score: 179
Period size: 46 Copynumber: 3.8 Consensus size: 45
75430751 TGGTTGAGCA
*
75430761 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-ATGCAAACG
* * * *
75430807 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAA--A--CG
* *
75430854 TCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAACG
* * * *
75430900 CCCGAGCTTGTTGAGTTGAGTCCAAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75430934 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACG
Found at i:75430917 original size:93 final size:93
Alignment explanation
Indices: 75430758--75430928 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
75430748 GGATGGTTGA
* * *
75430758 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGT
*
75430823 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* * * *
75430851 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGT
75430916 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
75430929 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGAATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:75436529 original size:19 final size:19
Alignment explanation
Indices: 75436505--75436543 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
75436495 CTGACCCCTA
75436505 TTTTCAAAATTTTCAATTT
1 TTTTCAAAATTTTCAATTT
* * *
75436524 TTTTCACATTTTTCTATTT
1 TTTTCAAAATTTTCAATTT
75436543 T
1 T
75436544 GTTTTAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTCAAAATTTTCAATTT
Found at i:75438067 original size:20 final size:21
Alignment explanation
Indices: 75438042--75438082 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
75438032 GTATCAATAT
75438042 TTTAAAAA-TATCGATACTTA
1 TTTAAAAAGTATCGATACTTA
75438062 TTTAAAAAGGTATCGATACTT
1 TTTAAAAA-GTATCGATACTT
75438083 TTTGGCCTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
22 11 0.58
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (21 bp):
TTTAAAAAGTATCGATACTTA
Found at i:75438229 original size:33 final size:33
Alignment explanation
Indices: 75438178--75438268 Score: 110
Period size: 33 Copynumber: 2.8 Consensus size: 33
75438168 TCTCGATGGG
*
75438178 CTATCTTTATTCCATGTTTATTGTCCCAGTAGA
1 CTATCTCTATTCCATGTTTATTGTCCCAGTAGA
* * ** * *
75438211 CTATCTCTATTTCGTGTTTATTGTTTCGGTGGA
1 CTATCTCTATTCCATGTTTATTGTCCCAGTAGA
*
75438244 CTATCTCTATTCCATGTTTACTGTC
1 CTATCTCTATTCCATGTTTATTGTC
75438269 TTGACAGACT
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.16, C:0.21, G:0.14, T:0.48
Consensus pattern (33 bp):
CTATCTCTATTCCATGTTTATTGTCCCAGTAGA
Found at i:75438519 original size:51 final size:50
Alignment explanation
Indices: 75438419--75438535 Score: 130
Period size: 51 Copynumber: 2.3 Consensus size: 50
75438409 GTCTTACTCA
* * *
75438419 TTATACCTTGTTGCCATACCATCTTTCATCTATGGTCTTACACTGTATACC
1 TTATACCTTG-TACCATACCATCTTTCATCCATGGTCTTACACTATATACC
* **
75438470 TTATACCTTGTAACCATAGCATCTTTCATCCATGGTCTTA-TGTCATATACC
1 TTATACCTTGT-ACCATACCATCTTTCATCCATGGTCTTACACT-ATATACC
*
75438521 TT-TACCGTGTACCAT
1 TTATACCTTGTACCAT
75438536 GCTGTCATGG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
49 5 0.09
50 9 0.16
51 43 0.75
ACGTcount: A:0.23, C:0.26, G:0.10, T:0.40
Consensus pattern (50 bp):
TTATACCTTGTACCATACCATCTTTCATCCATGGTCTTACACTATATACC
Found at i:75440625 original size:18 final size:20
Alignment explanation
Indices: 75440589--75440635 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
75440579 AGTTGTAAGT
75440589 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
75440609 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
75440628 ATGATATA
1 AT-ATATA
75440636 ACATGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:75441106 original size:50 final size:50
Alignment explanation
Indices: 75441033--75441330 Score: 308
Period size: 50 Copynumber: 5.9 Consensus size: 50
75441023 TAAGACAGTT
* * *
75441033 TTAGGTCATGTGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGG
* * * * * * * *
75441083 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGATAGT
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGAT-GG
* * * * *
75441134 TTCGATCACGTGTGTAGTACAAAGTACAGGCTACTACGGGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGG
* *
75441184 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGG
* * * * * ***
75441234 ATAGGTCGCATGTGTAGTACTAAGTACAGGCCACAACGTGTATTGGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGG
* * * * *
75441284 ATAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGA
75441331 GAGCTTCGAT
Statistics
Matches: 196, Mismatches: 51, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
50 159 0.81
51 37 0.19
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATGG
Found at i:75441292 original size:100 final size:101
Alignment explanation
Indices: 75441043--75441330 Score: 362
Period size: 100 Copynumber: 2.9 Consensus size: 101
75441033 TTAGGTCATG
* * * *
75441043 TGTGTAGTACTAAGTACAGGCTACTACGTGTACAAGATTGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * * * *
75441108 GCAGGCTATTATGCGTACCCGATAGTTTCGATCACG
66 GCAGGCTACTATGCGTACCAGATAGTATAGATCACA
* * *
75441144 TGTGTAGTACAAAGTACAGGCTACTACGGGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * * * *
75441209 GCAGGCTACTACGTGTACCAGATTG-ATAGGTCGCA
66 GCAGGCTACTATGCGTACCAGATAGTATAGATCACA
* * ** * *
75441244 TGTGTAGTACTAAGTACAGGCCACAACGTGTATTGGATGGATAAGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTACAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACTAAGT
75441309 GCAGGCTACTATGCGTACCAGA
66 GCAGGCTACTATGCGTACCAGA
75441331 GAGCTTCGAT
Statistics
Matches: 160, Mismatches: 27, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
100 82 0.51
101 78 0.49
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.28
Consensus pattern (101 bp):
TGTGTAGTACTAAGTACAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCAGATAGTATAGATCACA
Found at i:75441551 original size:16 final size:16
Alignment explanation
Indices: 75441530--75441561 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
75441520 AGAATGGAGT
75441530 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
75441546 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
75441562 GAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:75442222 original size:180 final size:177
Alignment explanation
Indices: 75441888--75442247 Score: 427
Period size: 180 Copynumber: 2.0 Consensus size: 177
75441878 TCCGAGAGAT
* *
75441888 GTACCATGAGATAAATAATTTTTAGTGAAAAGAGGTCGGAACTATCAAACAGTGAAATAGGTGTA
1 GTACCATGAAATAAATAATTTTTAGTGAAAAGAGGTCAGAACTATCAAACAGTGAAATAGGTGTA
* * ** * * * *
75441953 TATTTAATGAATAAATTGTACTAATCCAAACTAAAAATTCTGAAAATTTTATGGTAAGAATATAT
66 TATTTAATGAATAAACTGTAATAATAAAAACCAAAAATTCTAAAAATTTTATGCTAAGAAGATAT
* * * * * *
75442018 GTTAGTCTAGTTTCAGGGAAAATTAATGGTTCTCAATTTGGAGTTCC
131 ATGAGCCTAGTTTCAGAGAAAATTAACGGATCTCAATTTGGAGTTCC
* * * * *
75442065 GTACTATGAAATAAATATTTTTTTAGTGAAGAGAGG-CAGAACTGTCAGACAGTGAAATAGG-GA
1 GTACCATGAAATAAATA-ATTTTTAGTGAAAAGAGGTCAGAACTATCAAACAGTGAAATAGGTG-
*
75442128 TATCTTTAATGAATAAACTGTAATAATTGGAAAAACCAAAAATTCTAAAAATTTTATGCTAAGAA
64 TATATTTAATGAATAAACTGTAATAA-T--AAAAACCAAAAATTCTAAAAATTTTATGCTAAGAA
* * * *
75442193 GATATATGAGCCTAGTTTCAGATAAAATTAACGGATCTTAATTTTGAGTTTC
126 GATATATGAGCCTAGTTTCAGAGAAAATTAACGGATCTCAATTTGGAGTTCC
75442245 GTA
1 GTA
75442248 GCTCCAGATA
Statistics
Matches: 152, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
176 1 0.01
177 60 0.39
178 17 0.11
180 74 0.49
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (177 bp):
GTACCATGAAATAAATAATTTTTAGTGAAAAGAGGTCAGAACTATCAAACAGTGAAATAGGTGTA
TATTTAATGAATAAACTGTAATAATAAAAACCAAAAATTCTAAAAATTTTATGCTAAGAAGATAT
ATGAGCCTAGTTTCAGAGAAAATTAACGGATCTCAATTTGGAGTTCC
Found at i:75443210 original size:24 final size:22
Alignment explanation
Indices: 75443170--75443215 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
75443160 GTGTTGAAGA
*
75443170 CACACGAGCGTGTCCCTGTTTC
1 CACACGAGCGTGTCCCTATTTC
*
75443192 CACACGGGCGTGTGACCCTATTTC
1 CACACGAGCGTGT--CCCTATTTC
75443216 ATGAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
24 8 0.40
ACGTcount: A:0.15, C:0.35, G:0.24, T:0.26
Consensus pattern (22 bp):
CACACGAGCGTGTCCCTATTTC
Found at i:75445045 original size:40 final size:39
Alignment explanation
Indices: 75444961--75445183 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 39
75444951 TTGAATGATG
* * * *
75444961 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
75445001 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
75445041 TCCGGGCTAAGCCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
75445079 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
75445118 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
75445159 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
75445184 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 34 0.21
39 38 0.23
40 81 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75445205 original size:79 final size:78
Alignment explanation
Indices: 75444961--75445216 Score: 243
Period size: 79 Copynumber: 3.3 Consensus size: 78
75444951 TTGAATGATG
* * * * * * *
75444961 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCGAAGGCATTT
** *
75445026 GTGCGAGAT-ACTAAT
64 GAACGAG-TGACTAAA
* * *
75445041 TCCGGGCTAAG-CCCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGA
* *
75445105 GCGAGTTACTAAA
66 ACGAGTGACTAAA
*
75445118 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGCTAAGT-CCGAAGGCATT
*
75445182 TGAACGAG-GAGCTATA
63 TGAACGAGTGA-CTAAA
* *
75445198 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
75445217 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
76 1 0.01
77 35 0.23
78 26 0.17
79 54 0.35
80 37 0.24
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTGA
ACGAGTGACTAAA
Found at i:75453034 original size:40 final size:40
Alignment explanation
Indices: 75452950--75453174 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
75452940 TTGAATGATG
* * * *
75452950 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
75452990 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75453030 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
75453069 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
75453109 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
75453150 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75453175 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 119 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75453192 original size:80 final size:80
Alignment explanation
Indices: 75452950--75453207 Score: 217
Period size: 80 Copynumber: 3.2 Consensus size: 80
75452940 TTGAATGATG
* * * * * * *
75452950 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACCATATCCGGACTAAGAT-CCGAAGGTA
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGCT-ACTAAATCCGGGCTAAG-TCCCGAAGGCA
** *
75453012 TTTGTGCGAGAT-ACTAAT
63 TTTGAACGAG-TGACTAAA
* * *
75453030 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGCTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
75453094 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
75453109 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGCTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
75453173 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
75453189 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
75453208 TACGTGATTT
Statistics
Matches: 152, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.01
79 72 0.47
80 76 0.50
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGCTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:75453196 original size:119 final size:119
Alignment explanation
Indices: 75452950--75453207 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
75452940 TTGAATGATG
* * *
75452950 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGTATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
75453015 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
75453069 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
75453132 TTGTGCGAGCTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
75453189 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
75453208 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 82 0.71
120 31 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:75457573 original size:29 final size:29
Alignment explanation
Indices: 75457541--75457607 Score: 125
Period size: 29 Copynumber: 2.3 Consensus size: 29
75457531 AGGAATTTAT
75457541 TTGTAAAATGTGAAAAATCCATGGTTAAA
1 TTGTAAAATGTGAAAAATCCATGGTTAAA
75457570 TTGTAAAATGTGAAAAATCCATGGTTAAA
1 TTGTAAAATGTGAAAAATCCATGGTTAAA
*
75457599 TTGCAAAAT
1 TTGTAAAAT
75457608 ACGATGTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.45, C:0.07, G:0.16, T:0.31
Consensus pattern (29 bp):
TTGTAAAATGTGAAAAATCCATGGTTAAA
Found at i:75464280 original size:44 final size:44
Alignment explanation
Indices: 75464139--75464310 Score: 185
Period size: 43 Copynumber: 4.0 Consensus size: 44
75464129 AACTCGTACA
* * * *
75464139 ATGCCAATGTCCTAGACGTGGTCTTACATGTAAA-CAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* * *
75464182 ATGCC-ACTGTCCCAAACAGGGTCTTACATG-AAATCAAATAT-G
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAATATCG
* *
75464224 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAA-ATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AATATCG
* *
75464268 ATGCCAACGTCCCAGACATGGTCTTACACG-AAAGCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
75464311 GATCCTATGT
Statistics
Matches: 109, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
42 30 0.28
43 48 0.44
44 31 0.28
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAATATCG
Found at i:75464328 original size:86 final size:84
Alignment explanation
Indices: 75464139--75464308 Score: 209
Period size: 86 Copynumber: 2.0 Consensus size: 84
75464129 AACTCGTACA
* * *
75464139 ATGCCAATGTCCTAGACGTGGTCTTACATGTAAACAAATATCGATGCCACTGTCCCAAACAGGGT
1 ATGCCGATGTCC-AGACATGGTCTTACACGTAAACAAATATCGATGCCACTGTCCCAAACAGGGT
* *
75464204 CTTACATGAAATCAAATATG
65 CTTACACGAAAGCAAATATG
* *
75464224 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCATAA-ATCGATGCCAAC-GTCCCAGACAT
1 ATGCCGATGT-CCAGACATGGTCTTACACGTAAA-CA-AATATCGATGCC-ACTGTCCCAAACAG
*
75464287 GGTCTTACACGAAAGCACATAT
62 GGTCTTACACGAAAGCAAATAT
75464309 CGGATCCTAT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
85 28 0.38
86 41 0.56
87 4 0.05
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.24
Consensus pattern (84 bp):
ATGCCGATGTCCAGACATGGTCTTACACGTAAACAAATATCGATGCCACTGTCCCAAACAGGGTC
TTACACGAAAGCAAATATG
Found at i:75472221 original size:48 final size:48
Alignment explanation
Indices: 75472150--75472733 Score: 801
Period size: 48 Copynumber: 11.8 Consensus size: 48
75472140 CAAGATAAAT
*
75472150 ATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75472198 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75472246 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75472294 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75472342 ATAGGTATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75472390 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75472438 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75472486 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAGCCGA-ATGGCTAATGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA----ATAT-G-T-ATGAG
* * * * ** * * * *
75472540 AAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAATATGTATGAG
1 ATATGTATAT--G-T-GGTA-AAGCCG-AATGGC-TAA---T-GTG--AAATATGTATGAG
* *
75472601 ATATGTATATGTGGCAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75472649 ATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75472697 ATATGTATTTGTGGTAAAGCCGAGTGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
75472734 GCCGAATGGC
Statistics
Matches: 478, Mismatches: 37, Indels: 42
0.86 0.07 0.08
Matches are distributed among these distances:
48 410 0.86
50 2 0.00
51 3 0.01
52 2 0.00
53 1 0.00
54 13 0.03
55 4 0.01
56 4 0.01
57 3 0.01
58 4 0.01
59 4 0.01
60 4 0.01
61 14 0.03
62 1 0.00
63 2 0.00
64 3 0.01
65 2 0.00
67 2 0.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75472312 original size:96 final size:96
Alignment explanation
Indices: 75472150--75472860 Score: 886
Period size: 96 Copynumber: 7.0 Consensus size: 96
75472140 CAAGATAAAT
*
75472150 ATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
75472215 AGCCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
*
75472246 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
75472311 AGCCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75472342 ATAGGTATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
75472407 AGCCGAATGGCTAATGTGAAATATGTATGAG
66 AGCCGAATGGCTAATGTGAAATATGTATGAG
75472438 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
75472503 AGCCGAATGGCTAATGTGAAGCCGA-ATGGCTAATGTGAAATAT
66 AGCCGAATGGCTAATGTGAA----ATAT-G-T-A--TG----AG
*
75472546 ATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATGTGAAATATGTATGAGATATGTATAT
1 ATA-------TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
* *
75472611 GTGGCAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
59 GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75472649 ATATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATTTGTGGTAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
75472714 AGCCGAGTGGCTAATGTGAAGCCGA-ATGGCTAATGTGAAATAT
66 AGCCGAATGGCTAATGTGAA----ATAT-G-T-A--TG----AG
* *
75472757 ATATGAGATATGTATATGTGGTAAACCCGAATGGCTAATGTGAAATATGTATGAGATACGTATAT
1 ATA-------TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAT
* ** *
75472822 GTGGTAAAGCCGAAGGGCTTGTGTGAAATATGTAGGAG
59 GTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75472860 A
1 A
75472861 CGTTTGTATA
Statistics
Matches: 546, Mismatches: 27, Indels: 77
0.84 0.04 0.12
Matches are distributed among these distances:
96 348 0.64
99 4 0.01
100 4 0.01
101 2 0.00
102 2 0.00
103 6 0.01
104 4 0.01
107 3 0.01
108 8 0.01
109 2 0.00
110 2 0.00
111 4 0.01
112 4 0.01
115 153 0.28
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (96 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75472526 original size:19 final size:19
Alignment explanation
Indices: 75472502--75472541 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
75472492 ATATGTGGTA
75472502 AAGCCGAATGGCTAATGTG
1 AAGCCGAATGGCTAATGTG
75472521 AAGCCGAATGGCTAATGTG
1 AAGCCGAATGGCTAATGTG
75472540 AA
1 AA
75472542 ATATATATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.15, G:0.30, T:0.20
Consensus pattern (19 bp):
AAGCCGAATGGCTAATGTG
Found at i:75472539 original size:115 final size:115
Alignment explanation
Indices: 75472406--75472840 Score: 450
Period size: 115 Copynumber: 3.9 Consensus size: 115
75472396 ATATGTGGTA
* *
75472406 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
*
75472471 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
66 TGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTG
75472521 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
*
75472586 TGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAGTGTG
66 TGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTG
* * * * * * * * * * *
75472636 AA----ATAT-G-T-ATGAGATATGTATATGTGGTAAAGCAGAATG-GCTAATG-TGAAA---T-
1 AAGCCGA-ATGGCTAATGTGAAATATATATGAGAT-ATGTA-TATGTGGTAAAGCCGAAAGGCTA
* * *
75472688 ATGTATGAGATATG--T-----A--T-T-TGTGGTAAAGCCGAGTGGCTAATGTG
63 ATG--TGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTG
* *
75472732 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAACCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
* * *
75472797 TGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAAGGGCT
66 TGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCT
75472841 TGTGTGAAAT
Statistics
Matches: 256, Mismatches: 35, Indels: 58
0.73 0.10 0.17
Matches are distributed among these distances:
96 25 0.10
97 1 0.00
98 1 0.00
99 2 0.01
100 6 0.02
101 8 0.03
102 18 0.07
104 8 0.03
105 5 0.02
106 5 0.02
107 8 0.03
109 19 0.07
110 9 0.04
111 6 0.02
112 2 0.01
113 1 0.00
114 1 0.00
115 131 0.51
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (115 bp):
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
TGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAATGTG
Found at i:75472545 original size:163 final size:164
Alignment explanation
Indices: 75472357--75472849 Score: 669
Period size: 163 Copynumber: 3.0 Consensus size: 164
75472347 TATATGTGGT
*
75472357 AAAGCCGAATGGCCAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
75472422 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
66 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
75472487 TATGTATATGTGGTAAAGCCGAATGGCTAATGTG
131 TATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
75472521 -AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAAT
1 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
* *
75472585 GTGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
66 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
*
75472650 TATGTATATGTGGTAAAGCAGAATGGCTAATGTG
131 TATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*** * * ** * * * *
75472684 AAATATGTATGAGAT-ATGT-ATTTGTGGTAAAGCCGAGT-GGCTA-ATGT-G--AAGCCGAATG
1 AAAGCCGAATG-GCTAATGTGAAATAT-GT-ATG-AGA-TATG-TATATGTGGTAAAGCCGAATG
* *
75472742 GCTAATGTGAAATATATATGAGATATGTATATGTGGTAAACCCGAATGGCTAATGTGAAATATGT
60 GCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
* * **
75472807 ATGAGATACGTATATGTGGTAAAGCCGAAGGGCTTGTGTG
125 ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
75472847 AAA
1 AAA
75472850 TATGTAGGAG
Statistics
Matches: 294, Mismatches: 28, Indels: 15
0.87 0.08 0.04
Matches are distributed among these distances:
163 268 0.91
164 11 0.04
165 5 0.02
166 7 0.02
167 3 0.01
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (164 bp):
AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
TATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:75472563 original size:211 final size:211
Alignment explanation
Indices: 75472310--75472860 Score: 976
Period size: 211 Copynumber: 2.6 Consensus size: 211
75472300 ATATGTGGTA
* * *
75472310 AAGCCGAATGGCTAATGTGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCCAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
75472375 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
66 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
*
75472440 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
131 ATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
75472505 CCGAATGGCTAATGTG
196 CCGAATGGCTAATGTG
*
75472521 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
75472586 TGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
66 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
*
75472651 ATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATTTGTGGTAAAG
131 ATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
*
75472716 CCGAGTGGCTAATGTG
196 CCGAATGGCTAATGTG
*
75472732 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAACCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * * *
75472797 TGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAAGGGCTTGTGTGAAATATGTAGGAGA
66 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGA
75472861 CGTTTGTATA
Statistics
Matches: 324, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
211 324 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (211 bp):
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
ATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
CCGAATGGCTAATGTG
Found at i:75472727 original size:259 final size:259
Alignment explanation
Indices: 75472262--75472733 Score: 863
Period size: 259 Copynumber: 1.8 Consensus size: 259
75472252 ATATGTGGTA
* *
75472262 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
*
75472327 TGAAATATGTATGAGATAGGTATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAGAT
66 TGAAATATGTATGAGATAGGTATATGTGGCAAAGCCGAATGGCCAATGTGAAATATGTATGAGAT
*
75472392 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
131 ATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
75472457 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
196 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
75472521 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
* * *
75472586 TGAAATATGTATGAGATATGTATATGTGGCAAAGCCGAATGGCTAGTGTGAAATATGTATGAGAT
66 TGAAATATGTATGAGATAGGTATATGTGGCAAAGCCGAATGGCCAATGTGAAATATGTATGAGAT
*
75472651 ATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATTTGTGGTAAAG
131 ATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
*
75472716 CCGAGTGGCTAATGTGAA
196 CCGAATGGCTAATGTGAA
75472734 GCCGAATGGC
Statistics
Matches: 204, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
259 204 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (259 bp):
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAAAGGCTAATG
TGAAATATGTATGAGATAGGTATATGTGGCAAAGCCGAATGGCCAATGTGAAATATGTATGAGAT
ATGTATATGTGGTAAAGCAGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:75472737 original size:19 final size:19
Alignment explanation
Indices: 75472713--75472752 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
75472703 ATTTGTGGTA
*
75472713 AAGCCGAGTGGCTAATGTG
1 AAGCCGAATGGCTAATGTG
75472732 AAGCCGAATGGCTAATGTG
1 AAGCCGAATGGCTAATGTG
75472751 AA
1 AA
75472753 ATATATATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.33, T:0.20
Consensus pattern (19 bp):
AAGCCGAATGGCTAATGTG
Found at i:75472853 original size:48 final size:48
Alignment explanation
Indices: 75472732--75472860 Score: 195
Period size: 48 Copynumber: 2.7 Consensus size: 48
75472722 GGCTAATGTG
* *
75472732 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTA
*
75472780 AACCCGAATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTA
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTA
* ** *
75472828 AAGCCGAAGGGCTTGTGTGAAATATGTAGGAGA
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGA
75472861 CGTTTGTATA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.28
Consensus pattern (48 bp):
AAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTA
Found at i:75473052 original size:37 final size:37
Alignment explanation
Indices: 75473002--75473109 Score: 155
Period size: 37 Copynumber: 2.9 Consensus size: 37
75472992 GGAAATATAT
75473002 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
* *
75473039 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
* * *
75473076 TCCAGGTAAGACCAGATAACTT-CGTGTGGAGATT
1 TCCGGGTAAGACCCGATGA-TTACGTGTGGAGATT
75473110 TCATCTGAGC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 63 0.98
38 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGATTACGTGTGGAGATTATG
Found at i:75474535 original size:40 final size:40
Alignment explanation
Indices: 75474391--75474916 Score: 730
Period size: 40 Copynumber: 13.0 Consensus size: 40
75474381 TTGAGAGTTA
*
75474391 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
75474431 TATATCC-GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
* **
75474471 ATATAGCCGGGCTAAGTCTTGAAGAGCATTCGTGCTGGTGT
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
75474512 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
75474552 TATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
* * *
75474593 ATATAGCCGGGCTAAGCCCCGAAGAGCATTCGTGTTGGTGT
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
75474634 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
* * * *
75474675 ATATAGCCGGGCTAAGCCCCAAAGAGCATTCGTACTGGTGT
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
75474716 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
*
75474757 ATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
** *
75474798 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAATGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
75474838 TATATTCGGGCTAAGTCCCGAAGAGCATTCATACTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
75474878 TATATCCGGGCTAGGTCTCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
75474917 ATGTGTATTC
Statistics
Matches: 430, Mismatches: 47, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
39 30 0.07
40 254 0.59
41 13 0.03
42 133 0.31
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:75474603 original size:82 final size:82
Alignment explanation
Indices: 75474391--75474918 Score: 773
Period size: 82 Copynumber: 6.5 Consensus size: 82
75474381 TTGAGAGTTA
* * *
75474391 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T-TATATCC-GGCTAAGTCCCGAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
*
75474453 AGCATTCGTGCTAGTGAT
66 AGCATTCGTGCTGGTG-T
* ** * *
75474471 ATATAGCCGGGCTAAGTCTTGAAGAGCATTCGTGCTGGTG-T-TATATCCGGGCTAAGTCCCGAA
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAA
75474534 GAGCATTCGTGCTGGTGT
65 GAGCATTCGTGCTGGTGT
* *
75474552 TATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGCCCCGAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
*
75474617 AGCATTCGTGTTGGTGT
66 AGCATTCGTGCTGGTGT
* *
75474634 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGCCCCAAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
*
75474699 AGCATTCGTACTGGTGT
66 AGCATTCGTGCTGGTGT
75474716 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
75474781 AGCATTCGTGCTGGTGT
66 AGCATTCGTGCTGGTGT
* *
75474798 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAATGATATAT--TCGGGCTAAGTCCCGAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
* *
75474861 AGCATTCATACTGGTGT
66 AGCATTCGTGCTGGTGT
* * * * *
75474878 TATATCCGGGCTAGGTCTCGAAGAGCAATCATGCTGGTGAT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
75474919 GTGTATTCGG
Statistics
Matches: 416, Mismatches: 28, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
80 101 0.24
81 47 0.11
82 268 0.64
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (82 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAG
AGCATTCGTGCTGGTGT
Found at i:75474617 original size:122 final size:122
Alignment explanation
Indices: 75474391--75474916 Score: 774
Period size: 122 Copynumber: 4.3 Consensus size: 122
75474381 TTGAGAGTTA
* *
75474391 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCC-GGCTAAGTCCCGAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGAG
**
75474455 CATTCGTGCTAGTGATATATAGCCGGGCTAAGTCTTGAAGAGCATTCGTGCTGGTGT
66 CATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
75474512 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGAG
* *
75474577 CATTCGTGCTAGTGATATATAGCCGGGCTAAGCCCCGAAGAGCATTCGTGTTGGTGT
66 CATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
75474634 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCGGGCTAAGCCCCAAAG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T-TATATCCGGGCTAAGTCCCAAAG
* * * *
75474699 AGCATTCGTACTGGTG-T-TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
64 AGCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T
* *
75474757 ATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGA
1 -TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGA
* * * *
75474822 GCATTCGTGCTAATGATATAT--TCGGGCTAAGTCCCGAAGAGCATTCATACTGGTGT
65 GCATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
75474878 TATATCCGGGCTAGGTCTCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
75474917 ATGTGTATTC
Statistics
Matches: 366, Mismatches: 32, Indels: 15
0.89 0.08 0.04
Matches are distributed among these distances:
120 34 0.09
121 47 0.13
122 205 0.56
123 5 0.01
124 75 0.20
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (122 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCAAAGAG
CATTCGTGCTAGTGATATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:75475130 original size:25 final size:25
Alignment explanation
Indices: 75475080--75475130 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
75475070 TGTGTAACAA
* *
75475080 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
75475105 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
75475130 C
1 C
75475131 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:75478589 original size:48 final size:48
Alignment explanation
Indices: 75478518--75478890 Score: 683
Period size: 48 Copynumber: 7.8 Consensus size: 48
75478508 CAAGATAAAT
*
75478518 ATATGTATATGTGGTAAAACCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75478566 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75478614 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75478662 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75478710 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
75478758 AAAGGTATATGTGGTAAAGCCGAATGGCCAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75478806 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75478854 ATATGTATATGTCGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
75478891 GCCGAATGGC
Statistics
Matches: 315, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 315 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75478894 original size:19 final size:19
Alignment explanation
Indices: 75478870--75478909 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
75478860 ATATGTCGTA
75478870 AAGCCGAATGGCTAATGTG
1 AAGCCGAATGGCTAATGTG
*
75478889 AAGCCGAATGGCTGATGTG
1 AAGCCGAATGGCTAATGTG
75478908 AA
1 AA
75478910 ATATATATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.33, T:0.20
Consensus pattern (19 bp):
AAGCCGAATGGCTAATGTG
Found at i:75478898 original size:67 final size:67
Alignment explanation
Indices: 75478822--75478957 Score: 245
Period size: 67 Copynumber: 2.0 Consensus size: 67
75478812 ATATGTGGTA
*
75478822 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTCGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCTAATG
75478887 TG
66 TG
* *
75478889 AAGCCGAATGGCTGATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCTAATG
75478954 TG
66 TG
75478956 AA
1 AA
75478958 ATATGTATGA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.28
Consensus pattern (67 bp):
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTCGTAAAGCCGAATGGCTAATG
TG
Found at i:75478909 original size:115 final size:114
Alignment explanation
Indices: 75478774--75479120 Score: 427
Period size: 115 Copynumber: 3.0 Consensus size: 114
75478764 ATATGTGGTA
*
75478774 AAGCCGAATGGCCAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGG-CTATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
75478839 TGAAATATGTATGAGATATGTATATGTCGTAAAGCCGAATGGCTAATGTG
65 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
75478889 AAGCCGAATGGCTGATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCT-ATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
75478954 TGAAATATGTATGAGATATTTATATGTGGTAAAGCCGAATGGCTAATGTG
65 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*** * * ** * * * *
75479004 AAATATGTATGAGATATGT-ATTTGTGGTAAAGCCGAGT-GGCTA-ATGT-G--AAGCCGAATGG
1 -AAGCCGAATG-GCTATGTGAAATAT-GT-ATG-AGA-TATG-TATATGTGGTAAAGCCGAATGG
*
75479063 CTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
59 CTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
75479119 AA
1 AA
75479121 ATATGTATGA
Statistics
Matches: 206, Mismatches: 18, Indels: 17
0.85 0.07 0.07
Matches are distributed among these distances:
114 3 0.01
115 177 0.86
116 11 0.05
117 5 0.02
118 7 0.03
119 3 0.01
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (114 bp):
AAGCCGAATGGCTATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
GAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:75478921 original size:163 final size:163
Alignment explanation
Indices: 75478726--75479180 Score: 784
Period size: 163 Copynumber: 2.8 Consensus size: 163
75478716 ATATGTGGTA
* * * *
75478726 AAGCCGAATGGCTAATGTGAAATATGTATGAGAAAGGTATATGTGGTAAAGCCGAATGGCCAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
75478791 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
66 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
75478856 ATGTATATGTCGTAAAGCCGAATGGCTAATGTG
131 ATGTATATGTCGTAAAGCCGAATGGCTAATGTG
*
75478889 AAGCCGAATGGCTGATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
*
75478954 TGAAATATGTATGAGATATTTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
66 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
* * *
75479019 ATGTATTTGTGGTAAAGCCGAGTGGCTAATGTG
131 ATGTATATGTCGTAAAGCCGAATGGCTAATGTG
75479052 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* * * * *
75479117 TGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTTAAATATGTAGGAGA
66 TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
75479181 CGTGTGTATA
Statistics
Matches: 276, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
163 276 1.00
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.29
Consensus pattern (163 bp):
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
ATGTATATGTCGTAAAGCCGAATGGCTAATGTG
Found at i:75478945 original size:48 final size:48
Alignment explanation
Indices: 75478889--75479053 Score: 285
Period size: 48 Copynumber: 3.4 Consensus size: 48
75478879 GGCTAATGTG
* *
75478889 AAGCCGAATGGCTGATGTGAAATATATATGAGATATGTATATGTGGTA
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
*
75478937 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATTTATATGTGGTA
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
*
75478985 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATTTGTGGTA
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
*
75479033 AAGCCGAGTGGCTAATGTGAA
1 AAGCCGAATGGCTAATGTGAA
75479054 GCCGAATGGC
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 111 1.00
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTA
Found at i:75479057 original size:19 final size:19
Alignment explanation
Indices: 75479033--75479072 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
75479023 ATTTGTGGTA
*
75479033 AAGCCGAGTGGCTAATGTG
1 AAGCCGAATGGCTAATGTG
75479052 AAGCCGAATGGCTAATGTG
1 AAGCCGAATGGCTAATGTG
75479071 AA
1 AA
75479073 ATATATATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.33, T:0.20
Consensus pattern (19 bp):
AAGCCGAATGGCTAATGTG
Found at i:75479064 original size:67 final size:67
Alignment explanation
Indices: 75478985--75479120 Score: 245
Period size: 67 Copynumber: 2.0 Consensus size: 67
75478975 ATATGTGGTA
* * *
75478985 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATTTGTGGTAAAGCCGAGTGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
75479050 TG
66 TG
75479052 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
75479117 TG
66 TG
75479119 AA
1 AA
75479121 ATATGTATGA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.29
Consensus pattern (67 bp):
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TG
Found at i:75479161 original size:115 final size:115
Alignment explanation
Indices: 75478937--75479154 Score: 400
Period size: 115 Copynumber: 1.9 Consensus size: 115
75478927 ATATGTGGTA
* *
75478937 AAGCCGAATGGCTAATGTGAAATATGTATGAGATATTTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
* *
75479002 TGAAATATGTATGAGATATGTATTTGTGGTAAAGCCGAGTGGCTAATGTG
66 TGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAGTGGCTAATGTG
75479052 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
1 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
75479117 TGAAATATGTATGAGATACGTATATGTGGTAAAGCCGA
66 TGAAATATGTATGAGATACGTATATGTGGTAAAGCCGA
75479155 AGGGCTAGTG
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
115 99 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (115 bp):
AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
TGAAATATGTATGAGATACGTATATGTGGTAAAGCCGAGTGGCTAATGTG
Found at i:75479173 original size:48 final size:48
Alignment explanation
Indices: 75479052--75479180 Score: 204
Period size: 48 Copynumber: 2.7 Consensus size: 48
75479042 GGCTAATGTG
* *
75479052 AAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTA
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTA
75479100 AAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTA
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTA
* * * *
75479148 AAGCCGAAGGGCTAGTGTTAAATATGTAGGAGA
1 AAGCCGAATGGCTAATGTGAAATATGTATGAGA
75479181 CGTGTGTATA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 75 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (48 bp):
AAGCCGAATGGCTAATGTGAAATATGTATGAGATACGTATATGTGGTA
Found at i:75479385 original size:37 final size:37
Alignment explanation
Indices: 75479322--75479393 Score: 110
Period size: 37 Copynumber: 1.9 Consensus size: 37
75479312 GGAAATATAT
* *
75479322 TCCGGGTAAGACCCGATGATTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCAGATAATTACGTGTGGAGATTTTG
75479359 TCCGGGTAAGACCAGATAACTT-CGTGTGGAGATTT
1 TCCGGGTAAGACCAGATAA-TTACGTGTGGAGATTT
75479394 CATCTGAGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 30 0.94
38 2 0.06
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.29
Consensus pattern (37 bp):
TCCGGGTAAGACCAGATAATTACGTGTGGAGATTTTG
Found at i:75480960 original size:67 final size:67
Alignment explanation
Indices: 75480877--75481012 Score: 245
Period size: 67 Copynumber: 2.0 Consensus size: 67
75480867 TAAAGTGGAG
*
75480877 GTCCTTATGTGGTAAATATCCCATTAATATGTTAGTGGAAGATAATGGCTTGGTAATTTTAAAAT
1 GTCCTTATGTGGTAAATAGCCCATTAATATGTTAGTGGAAGATAATGGCTTGGTAATTTTAAAAT
75480942 TT
66 TT
* *
75480944 GTCCTTATGTGTTAAATAGCCCATTAATATGTTAGTGGAAGATAATGGCTTGGTAATTTTGAAAT
1 GTCCTTATGTGGTAAATAGCCCATTAATATGTTAGTGGAAGATAATGGCTTGGTAATTTTAAAAT
75481009 TT
66 TT
75481011 GT
1 GT
75481013 AATAAATTTT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (67 bp):
GTCCTTATGTGGTAAATAGCCCATTAATATGTTAGTGGAAGATAATGGCTTGGTAATTTTAAAAT
TT
Found at i:75483201 original size:40 final size:40
Alignment explanation
Indices: 75483111--75483295 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
75483101 TCGAATGATG
* * *
75483111 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
*
75483152 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
75483191 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
75483230 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
75483269 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
75483296 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 13
0.83 0.09 0.09
Matches are distributed among these distances:
39 39 0.31
40 77 0.62
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:75483317 original size:79 final size:79
Alignment explanation
Indices: 75483164--75483318 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
75483154 GGACTAAGAT
* **
75483164 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
75483229 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
75483243 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
75483306 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
75483319 ATTCGAAGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:75496415 original size:15 final size:16
Alignment explanation
Indices: 75496395--75496434 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
75496385 TAAATTGGAA
75496395 AAATGAAAAGTT-ATT
1 AAATGAAAAGTTAATT
* *
75496410 AAATGACAATTTAATT
1 AAATGAAAAGTTAATT
75496426 AAATGAAAA
1 AAATGAAAA
75496435 AGAAAACAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (16 bp):
AAATGAAAAGTTAATT
Found at i:75500736 original size:40 final size:40
Alignment explanation
Indices: 75500685--75500776 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 40
75500675 CTCAGTATCG
* **
75500685 CACACTTAGTGCCTCA-TATAGCCAAAGCTATTCTAATTCA
1 CACACTAAGTGCCT-ATTATAGCCAAAGCTATTCTAAAACA
* * *
75500725 CACACTAAGTG-CTATTTATAGCCGAAGCTATTTTAAAACG
1 CACACTAAGTGCCTA-TTATAGCCAAAGCTATTCTAAAACA
75500765 CACACTAAGTGC
1 CACACTAAGTGC
75500777 AAAACATACT
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.02
39 2 0.05
40 40 0.93
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (40 bp):
CACACTAAGTGCCTATTATAGCCAAAGCTATTCTAAAACA
Found at i:75509885 original size:18 final size:18
Alignment explanation
Indices: 75509842--75509891 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
75509832 AAACAGTGGA
75509842 GAAAAAGAGAAAGAAAAAAG
1 GAAAAAGA-AAAG-AAAAAG
*
75509862 G-GAAAGAAAAGAAAAAG
1 GAAAAAGAAAAGAAAAAG
*
75509879 GAAAAAGTAAAGA
1 GAAAAAGAAAAGA
75509892 TTTGAAGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 7 0.27
18 13 0.50
19 5 0.19
20 1 0.04
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (18 bp):
GAAAAAGAAAAGAAAAAG
Found at i:75510965 original size:45 final size:45
Alignment explanation
Indices: 75510866--75510970 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 45
75510856 ATGTGCCGAC
* *
75510866 TACTGTTACTATTACCGATTCGACACTTTGTGTGTCAAATACTGT
1 TACTGTTACTATTACAGATTCGACACTTTGTGTGTCAAATACTAT
** *
75510911 TACCATTACTATTACAGATTC-AGCACTTTGTGTGTTAAATACTAT
1 TACTGTTACTATTACAGATTCGA-CACTTTGTGTGTCAAATACTAT
*
75510956 TACTGTTACTGTTAC
1 TACTGTTACTATTAC
75510971 TGCTACCGTT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 1 0.02
45 50 0.98
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (45 bp):
TACTGTTACTATTACAGATTCGACACTTTGTGTGTCAAATACTAT
Found at i:75514718 original size:17 final size:17
Alignment explanation
Indices: 75514696--75514728 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75514686 AAGGAAAATA
*
75514696 AATGAATCTTAGAAACG
1 AATGAATCTTAAAAACG
75514713 AATGAATCTTAAAAAC
1 AATGAATCTTAAAAAC
75514729 TTAATAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (17 bp):
AATGAATCTTAAAAACG
Found at i:75524330 original size:20 final size:19
Alignment explanation
Indices: 75524307--75524348 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
75524297 AGATTATATA
75524307 TATTAT-ATTATATAATTGGT
1 TATTATAATTAT-TAATT-GT
75524327 TATTATAATTATTAATTGT
1 TATTATAATTATTAATTGT
75524346 TAT
1 TAT
75524349 GGTTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.24
20 11 0.52
21 5 0.24
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (19 bp):
TATTATAATTATTAATTGT
Found at i:75524895 original size:11 final size:12
Alignment explanation
Indices: 75524866--75524908 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
75524856 AAAACAGTGG
75524866 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
75524878 AGAAAAAGGGAA
1 AGAAAAAGAGAA
*
75524890 AG-AAAAGAAAA
1 AGAAAAAGAGAA
75524901 AGGAAAAA
1 A-GAAAAA
75524909 CTAGAGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 8 0.31
12 14 0.54
13 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:75524898 original size:17 final size:18
Alignment explanation
Indices: 75524870--75524903 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
75524860 CAGTGGAGAA
75524870 AAAGAGAAAGAAAAAGGG
1 AAAGAGAAAGAAAAAGGG
75524888 AAAGA-AAAGAAAAAGG
1 AAAGAGAAAGAAAAAGG
75524904 AAAAACTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AAAGAGAAAGAAAAAGGG
Found at i:75525957 original size:6 final size:6
Alignment explanation
Indices: 75525946--75525991 Score: 65
Period size: 6 Copynumber: 7.5 Consensus size: 6
75525936 GTGTGTTCAA
* *
75525946 TACTGT TACTGT TACTGT TACTGT TACTGC TACCGT TACTGAT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TAC
75525992 AGTTTAGGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
6 31 0.89
7 4 0.11
ACGTcount: A:0.20, C:0.22, G:0.15, T:0.43
Consensus pattern (6 bp):
TACTGT
Found at i:75528146 original size:39 final size:39
Alignment explanation
Indices: 75528079--75528262 Score: 239
Period size: 39 Copynumber: 4.7 Consensus size: 39
75528069 ACAAAGCATG
* * *
75528079 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTGT
1 CGGGAC-TT-AGCCCGGATATAACACCAACACGAATGCCT-T
*
75528120 -GGGACTTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAACACGAATGCCTT
75528159 CAGGG-CTTAGCCCGGATATAACACCAACACGAATGCCTT
1 C-GGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
**
75528198 CAAGACTTAGCCCGGATATAACACCAACACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
*
75528237 CGGGACTTAGCCCGAATATAACACCA
1 CGGGACTTAGCCCGGATATAACACCA
75528263 TTATAAAGTC
Statistics
Matches: 131, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
38 1 0.01
39 112 0.85
40 15 0.11
41 3 0.02
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.18
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAACACGAATGCCTT
Found at i:75528376 original size:28 final size:28
Alignment explanation
Indices: 75528335--75528399 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
75528325 ATTTAATCAT
75528335 TCAATATTCTGCACACTAAGTGACATTC
1 TCAATATTCTGCACACTAAGTGACATTC
* *
75528363 TCAATA-TCTCGCACATTAAGTGCCATTC
1 TCAATATTCT-GCACACTAAGTGACATTC
75528391 TCAATATTC
1 TCAATATTC
75528400 CGTACACTGA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 3 0.09
28 28 0.85
29 2 0.06
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (28 bp):
TCAATATTCTGCACACTAAGTGACATTC
Found at i:75528416 original size:28 final size:28
Alignment explanation
Indices: 75528335--75528416 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
75528325 ATTTAATCAT
*
75528335 TCAATATTCTGCACACTAAGTGA-CATTC
1 TCAATATTCCGCACACTAAGT-ACCATTC
* *
75528363 TCAATA-TCTCGCACATTAAGTGCCATTC
1 TCAATATTC-CGCACACTAAGTACCATTC
* *
75528391 TCAATATTCCGTACACTGAGTACCAT
1 TCAATATTCCGCACACTAAGTACCAT
75528417 ATTTGATCGC
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
27 2 0.05
28 40 0.91
29 2 0.05
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (28 bp):
TCAATATTCCGCACACTAAGTACCATTC
Found at i:75534034 original size:22 final size:23
Alignment explanation
Indices: 75534001--75534044 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
75533991 AATATTTAAG
*
75534001 TATTAATATATAATATATTATAT
1 TATTAATATATAATATAATATAT
75534024 TATT-ATATATAATATAATATA
1 TATTAATATATAATATAATATA
75534045 ATATATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TATTAATATATAATATAATATAT
Found at i:75534038 original size:20 final size:20
Alignment explanation
Indices: 75533990--75534052 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
75533980 TATATTAACT
*
75533990 TAATATTTAAGTATTAATATA
1 TAATATATAA-TATTAATATA
* *
75534011 TAATATATTATATTATTATA
1 TAATATATAATATTAATATA
75534031 T-ATAATATAATA-TAATATA
1 TAAT-ATATAATATTAATATA
75534050 TAA
1 TAA
75534053 AACATAAGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
19 9 0.26
20 18 0.51
21 8 0.23
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TAATATATAATATTAATATA
Found at i:75534039 original size:17 final size:17
Alignment explanation
Indices: 75534008--75534052 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
75533998 AAGTATTAAT
75534008 ATATAATATAT--TATA
1 ATATAATATATAATATA
* *
75534023 TTATTATATATAATATA
1 ATATAATATATAATATA
75534040 ATATAATATATAA
1 ATATAATATATAA
75534053 AACATAAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 9 0.38
17 15 0.62
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATATAATATATAATATA
Found at i:75534042 original size:34 final size:37
Alignment explanation
Indices: 75533958--75534044 Score: 92
Period size: 39 Copynumber: 2.4 Consensus size: 37
75533948 GATATTTTTG
* **
75533958 ATATAA-AAAATATATTTTATATTATATTAACTTAAT
1 ATATAATATAATATATAATATATTATATTAACTTAAT
*
75533994 ATTTAAGTATTAATATATAATATATTATATT-A-TT-AT
1 ATATAA-TA-TAATATATAATATATTATATTAACTTAAT
75534030 ATATAATATAATATA
1 ATATAATATAATATA
75534045 ATATATAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
34 7 0.16
35 2 0.05
36 12 0.28
37 2 0.05
38 2 0.05
39 18 0.42
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (37 bp):
ATATAATATAATATATAATATATTATATTAACTTAAT
Found at i:75536089 original size:28 final size:27
Alignment explanation
Indices: 75536026--75536177 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
75536016 ATATTAAGTC
* * *
75536026 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
75536053 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
75536081 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
75536108 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
75536136 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
75536163 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75536178 GCACAATTTA
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:75536110 original size:55 final size:55
Alignment explanation
Indices: 75536026--75536177 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
75536016 ATATTAAGTC
* * *
75536026 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
75536081 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
*
75536136 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
75536178 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:75548640 original size:20 final size:19
Alignment explanation
Indices: 75548599--75548635 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
75548589 AGATAAATTT
75548599 GAACTCCCTACCAAATTCTA
1 GAACTCCCTACC-AATTCTA
75548619 GAACTCCCTACC-ATTCT
1 GAACTCCCTACCAATTCT
75548636 TTAGACAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
20 12 0.71
ACGTcount: A:0.30, C:0.38, G:0.05, T:0.27
Consensus pattern (19 bp):
GAACTCCCTACCAATTCTA
Found at i:75549791 original size:40 final size:40
Alignment explanation
Indices: 75549739--75549920 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
75549729 TATTCGAATG
*
75549739 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
75549779 ATATCTGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
75549819 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
75549859 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
*
75549899 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
75549921 TACTTGGGTT
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.11
40 111 0.87
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:75557478 original size:43 final size:43
Alignment explanation
Indices: 75557417--75557511 Score: 181
Period size: 43 Copynumber: 2.2 Consensus size: 43
75557407 CTGCGACAAG
75557417 TGTAAGTTCTATGCTTTGACACATTCCACTTAGAACCTAGAAT
1 TGTAAGTTCTATGCTTTGACACATTCCACTTAGAACCTAGAAT
*
75557460 TGTAAGTTCTGTGCTTTGACACATTCCACTTAGAACCTAGAAT
1 TGTAAGTTCTATGCTTTGACACATTCCACTTAGAACCTAGAAT
75557503 TGTAAGTTC
1 TGTAAGTTC
75557512 CTCGAGAATT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (43 bp):
TGTAAGTTCTATGCTTTGACACATTCCACTTAGAACCTAGAAT
Found at i:75558028 original size:24 final size:24
Alignment explanation
Indices: 75557993--75558038 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
75557983 AATTTGCATT
*
75557993 AATAATTCAAT-AAATTGAAAATCA
1 AATAATTAAATAAAATT-AAAATCA
75558017 AATAATTAAATAAAATTAAAAT
1 AATAATTAAATAAAATTAAAAT
75558039 TTAGGAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATTAAATAAAATTAAAATCA
Found at i:75558914 original size:18 final size:18
Alignment explanation
Indices: 75558874--75558916 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
75558864 GACATCTAAT
*
75558874 TTCAATATTTACAAAAAA
1 TTCAATTTTTACAAAAAA
* **
75558892 GTCAATTTTTACAATTAA
1 TTCAATTTTTACAAAAAA
75558910 TTCAATT
1 TTCAATT
75558917 AAGTCCCTAG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (18 bp):
TTCAATTTTTACAAAAAA
Found at i:75572359 original size:45 final size:45
Alignment explanation
Indices: 75572309--75572404 Score: 165
Period size: 45 Copynumber: 2.1 Consensus size: 45
75572299 GTTAGAATCG
*
75572309 ATTGATATTAGTAAAGAGCAAGTGTATTCTTTTCATGTTTGAAAT
1 ATTGATATTAGTAAAGAGCAAGTGTATTCTTTTCAGGTTTGAAAT
* *
75572354 ATTGATATTGGTAAAGAGTAAGTGTATTCTTTTCAGGTTTGAAAT
1 ATTGATATTAGTAAAGAGCAAGTGTATTCTTTTCAGGTTTGAAAT
75572399 ATTGAT
1 ATTGAT
75572405 CTTTCAAAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.43
Consensus pattern (45 bp):
ATTGATATTAGTAAAGAGCAAGTGTATTCTTTTCAGGTTTGAAAT
Found at i:75572972 original size:23 final size:23
Alignment explanation
Indices: 75572938--75572999 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
75572928 TATTATAACT
*
75572938 GAACTGACTTTGATACGGTTACC
1 GAACTGATTTTGATACGGTTACC
**
75572961 GAACTGATTTTGATATTGTTACC
1 GAACTGATTTTGATACGGTTACC
*
75572984 AAACTGATTTTGATAC
1 GAACTGATTTTGATAC
75573000 TGAAATGCAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (23 bp):
GAACTGATTTTGATACGGTTACC
Found at i:75574254 original size:15 final size:15
Alignment explanation
Indices: 75574234--75574263 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
75574224 TTCAACAAAT
75574234 GTTAAAGTTAATGAA
1 GTTAAAGTTAATGAA
75574249 GTTAAAGTTAATGAA
1 GTTAAAGTTAATGAA
75574264 CTATCTATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.20, T:0.33
Consensus pattern (15 bp):
GTTAAAGTTAATGAA
Found at i:75576219 original size:47 final size:46
Alignment explanation
Indices: 75576162--75576279 Score: 132
Period size: 47 Copynumber: 2.5 Consensus size: 46
75576152 CTAGCTAGTG
* **
75576162 TAAGATATGTCTGGGACATGCATC-TGCCA-CATTATGAGAGCCAGTA
1 TAAGACATGTCTGGGACATGCATCAT--CATCAAGATGAGAGCCAGTA
* * *
75576208 TAAGACCATGTCTGGGACATGGCATCATCATTAAGATGAGAGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCATCATCAAGATGAGAGCCAGTA
75576256 TAAGACATGTCTGGGACATGCATC
1 TAAGACATGTCTGGGACATGCATC
75576280 GGCCTTGAGA
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
46 10 0.16
47 29 0.47
48 22 0.35
49 1 0.02
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCATCATCAAGATGAGAGCCAGTA
Found at i:75576350 original size:46 final size:47
Alignment explanation
Indices: 75576156--75576368 Score: 147
Period size: 46 Copynumber: 4.6 Consensus size: 47
75576146 TTATTCCTAG
* * * * *
75576156 CTAGTGTAAGATATGTCTGGGACATGCATCTGCCAC-ATTATG-AGAGC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGTA-AGC
* ** * ** *
75576203 C-AGTATAAGACCATGTCTGGGACATGGCATCATCATTAAGATG-AGAG-
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGC
*
75576250 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGTAAGC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGC
* * *
75576297 CTA-TGTAAGACATGTTTGGGACATGCATCGG-CTACGAGATG-ATAGT
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTA-AGC
75576343 C-AGTGTAAGACCATGTCTGGGACATG
1 CTAGTGTAAGA-CATGTCTGGGACATG
75576369 GTATCGAATT
Statistics
Matches: 137, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
45 4 0.03
46 64 0.47
47 47 0.34
48 21 0.15
49 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (47 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGC
Found at i:75576383 original size:47 final size:48
Alignment explanation
Indices: 75576200--75576419 Score: 199
Period size: 47 Copynumber: 4.7 Consensus size: 48
75576190 ACATTATGAG
* * *
75576200 AGCCAGTATAAGACCATGTCTGGGACATGGCATC-ATCATTAAGATGA-G
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA--ATTGAGATGATA
* ** *
75576248 AGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGACG-TA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GAATTGAGATGATA
* ** *
75576294 AGCCTA-TGTAAGA-CATGTTTGGGACAT-GCATCGGCTACGAGATGAT-
1 AGCC-AGTGTAAGACCATGTCTGGGACATGGCATCGAAT-TGAGATGATA
* * *
75576340 AGTCAGTGTAAGACCATGTCTGGGACATGGTATCGAATTGAGAT-ATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAATTGAGATGATA
75576387 AGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCAT
75576420 TGGCACCTTA
Statistics
Matches: 142, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
45 4 0.03
46 56 0.39
47 65 0.46
48 17 0.12
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAATTGAGATGATA
Found at i:75576412 original size:140 final size:139
Alignment explanation
Indices: 75576160--75576415 Score: 347
Period size: 140 Copynumber: 1.8 Consensus size: 139
75576150 TCCTAGCTAG
* * *
75576160 TGTAAGATATGTCTGGGACATGCATCTGCCACATTATGAGAGCCAGTATAAGACCATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTATAAGACCATGTCTGGGA
*
75576225 CATGGCATCATCATTAAGATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGA
66 CATGGCATCA-CATTAAGATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGA
75576290 CGTAAGCCTA
130 CGTAAGCCTA
* * * * *
75576300 TGTAAGACATGTTTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTGGG
1 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGTATAAGACCATGTCTGGG
* *
75576364 ACATGGTATCGA-ATTGAGAT-ATGAGCCAGTGTAAGACCATGTCTGGGACATG
65 ACATGGCATC-ACATTAAGATGA-GAGCCAGTGTAAGA-CATGTCTGGGACATG
75576416 GCATTGGCAC
Statistics
Matches: 101, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.20
140 78 0.77
141 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (139 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTATAAGACCATGTCTGGGA
CATGGCATCACATTAAGATGAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGAC
GTAAGCCTA
Found at i:75577828 original size:68 final size:65
Alignment explanation
Indices: 75577622--75577843 Score: 209
Period size: 67 Copynumber: 3.4 Consensus size: 65
75577612 CATAATTTTG
* * * * *
75577622 GCTCTCTTGTACACATGTTGTACACATAGTATCACCTATGTGACCTAGCCA-CTTTA-TCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
** * * * * * * * *
75577685 GCTCTCTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGCTACATCTA-TCTC
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTC
75577749 GTA
63 GTA
75577752 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTC-T-AT-TCT
75577816 CGTA
62 CGTA
*
75577820 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
75577844 TCCCGTATTT
Statistics
Matches: 124, Mismatches: 25, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
63 17 0.14
64 27 0.22
65 1 0.01
66 22 0.18
67 28 0.23
68 28 0.23
69 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
Found at i:75582998 original size:49 final size:47
Alignment explanation
Indices: 75582625--75583271 Score: 917
Period size: 47 Copynumber: 13.6 Consensus size: 47
75582615 CCCTTCAGGA
* * *
75582625 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
75582672 CTAATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
75582719 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
75582766 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
75582813 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
75582860 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
75582907 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
75582954 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
75583003 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
75583050 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
75583099 CTTATAACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
75583148 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
75583197 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
75583246 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
75583272 ATATTCAAAT
Statistics
Matches: 563, Mismatches: 27, Indels: 20
0.92 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 334 0.59
49 225 0.40
50 1 0.00
51 2 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:75584802 original size:56 final size:57
Alignment explanation
Indices: 75584735--75584852 Score: 220
Period size: 57 Copynumber: 2.1 Consensus size: 57
75584725 TAGTTTATTA
75584735 CCCATGCTTCTTATTTTA-TTCTTCCATTAACACAACATGTTTCATGACATGTTTTG
1 CCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTTTCATGACATGTTTTG
*
75584791 CCCATGCTTCTTATTTTATTTTTTCCATTAACACAACATGTTTCATGACATGTTTTG
1 CCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTTTCATGACATGTTTTG
75584848 CCCAT
1 CCCAT
75584853 CATCCCTTGT
Statistics
Matches: 60, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
56 18 0.30
57 42 0.70
ACGTcount: A:0.23, C:0.24, G:0.08, T:0.45
Consensus pattern (57 bp):
CCCATGCTTCTTATTTTATTTCTTCCATTAACACAACATGTTTCATGACATGTTTTG
Found at i:75595204 original size:30 final size:30
Alignment explanation
Indices: 75595163--75595232 Score: 122
Period size: 30 Copynumber: 2.3 Consensus size: 30
75595153 GATGTTAAAG
* *
75595163 TGTCTGAATTCACTAAGTTAGGATTTACCT
1 TGTCTGTATTCACTAAGTTAGAATTTACCT
75595193 TGTCTGTATTCACTAAGTTAGAATTTACCT
1 TGTCTGTATTCACTAAGTTAGAATTTACCT
75595223 TGTCTGTATT
1 TGTCTGTATT
75595233 TACAGATTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (30 bp):
TGTCTGTATTCACTAAGTTAGAATTTACCT
Found at i:75601529 original size:17 final size:18
Alignment explanation
Indices: 75601507--75601544 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
75601497 TTATAATGTC
75601507 GAGAAAATT-TATTAATT
1 GAGAAAATTATATTAATT
*
75601524 GAGAAAATTATCTTAATT
1 GAGAAAATTATATTAATT
75601542 GAG
1 GAG
75601545 GGGTTAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.45, C:0.03, G:0.16, T:0.37
Consensus pattern (18 bp):
GAGAAAATTATATTAATT
Found at i:75605786 original size:9 final size:9
Alignment explanation
Indices: 75605772--75605797 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
75605762 TTTGAGCTTT
75605772 AAGCTCCTC
1 AAGCTCCTC
75605781 AAGCTCCTC
1 AAGCTCCTC
75605790 AAGCTCCT
1 AAGCTCCT
75605798 TCGGTGCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.42, G:0.12, T:0.23
Consensus pattern (9 bp):
AAGCTCCTC
Found at i:75610089 original size:39 final size:39
Alignment explanation
Indices: 75609971--75610102 Score: 203
Period size: 39 Copynumber: 3.4 Consensus size: 39
75609961 TGCATGGTAT
75609971 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* *
75610010 TAGAAATATATCCGGACTTGAAGTCCGCAGGCTTTATGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
* * *
75610049 TGGAAATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGC
1 TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTA-TGC
75610088 TGGAAAAATATCCGG
1 TGGAAAAATATCCGG
75610103 GCTAAGTCCC
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
38 2 0.02
39 84 0.98
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (39 bp):
TGGAAAAATATCCGGACTTGAAGTCCGCAGGCTTTATGC
Found at i:75610127 original size:39 final size:39
Alignment explanation
Indices: 75610095--75610309 Score: 342
Period size: 39 Copynumber: 5.5 Consensus size: 39
75610085 TGCTGGAAAA
*
75610095 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
75610134 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
75610173 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
75610212 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* *
75610251 ATATCTGGGCTAAGTCCCGAA-GCATTTGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
75610289 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
75610310 CATGCTTTGT
Statistics
Matches: 164, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
38 24 0.15
39 132 0.80
40 8 0.05
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:75610128 original size:78 final size:78
Alignment explanation
Indices: 75609978--75610307 Score: 305
Period size: 78 Copynumber: 4.2 Consensus size: 78
75609968 TATTGGAAAA
* * * * * *
75609978 ATATCCGGACTTGAAGTCCGCAGGCTTTA-TGCTAGAAATATATCCGGACTTGAAGT-CCGCAGG
1 ATATCCGGGCTT-AAGTCCGAAGGCATTAGTGCTGGAAATATATCCGGGC-T-AAGTCCCGAAGG
** *
75610041 C-TTTATGCTGGAAAT
63 CATTCGTGCTGGTAAT
* * * *
75610056 ATATCCGGACTTAAAGTCCGCAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTT-AAGTCCGAAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCGAAGGCA
**
75610120 TTCGTGCTGGTGTT
65 TTCGTGCTGGTAAT
* * *
75610134 ATATCCGGGC-TAAGTCCTGAAGGCATTCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTTAAGTCC-GAAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCGAAGGCA
**
75610198 TTCGTGCTGGTGCT
65 TTCGTGCTGGTAAT
* *** *
75610212 ATATCCGGGC-TAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCTGGGCTAAGTCCCGAA-GCA
1 ATATCCGGGCTTAAGT-CCGAAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCGAAGGCA
* *
75610275 TTTGTGCTGGTATT
65 TTCGTGCTGGTAAT
75610289 ATATCCGGGCTTAAAGTCC
1 ATATCCGGGCTT-AAGTCC
75610308 CGCATGCTTT
Statistics
Matches: 220, Mismatches: 24, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
76 10 0.05
77 40 0.18
78 164 0.75
79 6 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (78 bp):
ATATCCGGGCTTAAGTCCGAAGGCATTAGTGCTGGAAATATATCCGGGCTAAGTCCCGAAGGCAT
TCGTGCTGGTAAT
Found at i:75610177 original size:117 final size:117
Alignment explanation
Indices: 75610046--75610307 Score: 368
Period size: 117 Copynumber: 2.2 Consensus size: 117
75610036 GCAGGCTTTA
* * * *
75610046 TGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC-TAAGTGCTGGAAAAATATCCGGGCTAAGT
1 TGCTGGTATTATATCCGGGCTTAAAGTCCGAAGGCATAAGTGCTGGAAAAATATCCGGGCTAAGT
*
75610110 CCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCG
66 CCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAA-GCATTCG
** ****
75610163 TGCTGGTATTATATCCGGGC-T-AAGTCCCGAAGGCATTCGTGCTGGTGCTATATCCGGGCTAAG
1 TGCTGGTATTATATCCGGGCTTAAAGT-CCGAAGGCATAAGTGCTGGAAAAATATCCGGGCTAAG
* *
75610226 TCCCGAAGGCATTCGTGCTGGTGTTATATCTGGGCTAAGTCCCGAAGCATTTG
65 TCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGCATTCG
75610279 TGCTGGTATTATATCCGGGCTTAAAGTCC
1 TGCTGGTATTATATCCGGGCTTAAAGTCC
75610308 CGCATGCTTT
Statistics
Matches: 128, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
115 4 0.03
116 34 0.27
117 86 0.67
118 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (117 bp):
TGCTGGTATTATATCCGGGCTTAAAGTCCGAAGGCATAAGTGCTGGAAAAATATCCGGGCTAAGT
CCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGCATTCG
Found at i:75610326 original size:117 final size:117
Alignment explanation
Indices: 75610095--75610309 Score: 378
Period size: 117 Copynumber: 1.8 Consensus size: 117
75610085 TGCTGGAAAA
*
75610095 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCTGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
75610160 TCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
66 TCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
*
75610212 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCTGGGCTAAGTCCCGAA-GCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
*
75610276 TTGTGCTGGTATTATATCCGGGCTTAAAGTCCCG
66 TCGTGCTGGTATTATATCCGGGC-T-AAGTCCCG
75610310 CATGCTTTGT
Statistics
Matches: 93, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
116 26 0.28
117 59 0.63
118 8 0.09
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (117 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAGGCAT
TCGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
Found at i:75615763 original size:46 final size:46
Alignment explanation
Indices: 75615701--75615926 Score: 213
Period size: 46 Copynumber: 4.8 Consensus size: 46
75615691 GATATTTGGG
* *
75615701 CATCCAAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* *
75615747 CATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * * * *
75615793 CGTCCGAACTCGTTGAGTTAAGTCCGAGTTC-GTGAAATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
* * *
75615840 CATCCAAACTCGTTGAGTTGATTCTGAGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTC--CGAGTTCACTTATGGATGCGAA
* * * * *
75615888 TACCCGAGCTTGTTAAGTTGAGTCCGAGTTCACTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75615927 GTGGGTTACA
Statistics
Matches: 140, Mismatches: 33, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
45 1 0.01
46 85 0.61
47 24 0.17
48 21 0.15
49 8 0.06
50 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:75632667 original size:6 final size:6
Alignment explanation
Indices: 75632636--75632711 Score: 115
Period size: 6 Copynumber: 13.3 Consensus size: 6
75632626 TCCTCCTATC
*
75632636 TTTTAT TCTT-T TTTTA- -TTTA- TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
75632680 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
75632712 CAAATTTATT
Statistics
Matches: 65, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
4 4 0.06
5 8 0.12
6 53 0.82
ACGTcount: A:0.16, C:0.01, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:75635640 original size:13 final size:13
Alignment explanation
Indices: 75635624--75635656 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75635614 TTTAATTAAA
*
75635624 TTAGTTAATTAGT
1 TTAGATAATTAGT
75635637 TTAGATAATTAGT
1 TTAGATAATTAGT
75635650 TTA-ATAA
1 TTAGATAA
75635657 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:75638996 original size:29 final size:27
Alignment explanation
Indices: 75638978--75639047 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
75638968 ATATTAAGTC
75638978 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
75639005 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
75639033 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
75639048 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:75639041 original size:28 final size:28
Alignment explanation
Indices: 75638978--75639075 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
75638968 ATATTAAGTC
*
75638978 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
75639005 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75639033 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
75639062 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75639076 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75647669 original size:138 final size:137
Alignment explanation
Indices: 75647345--75647837 Score: 569
Period size: 138 Copynumber: 3.6 Consensus size: 137
75647335 GTGAGCTAGT
* * * * *
75647345 GTAAGACATGTCTGGGACATGCATCAGCCACATTATGA-GAG-CAAGTGTAAGACCATGTTTGGG
1 GTAAGACATGTCAGGGACATGCATCAG-C-TATGA-GATGTGTC-AGTGTAAGACCATGTGTGGG
* * * * * * *
75647408 ACATGGCATCGTCATTGAGATGAGTTCTAGTGTAAAGACATGTCCGGGACATCCATCAGCCTTGA
62 ACATGGCATCGGCATTGAGA-AAGTGCTAGTG-AAAGACATGTCTGGGACATACATCGGCCTCGA
* **
75647473 GACGAAAGCCGGA
125 GACAAAAGCCAAA
*
75647486 GTAAGACATGTCAGGGACATGCATCCA-CTATGAGATGTGTCAGTGTAAGACCATGTGTGAGACA
1 GTAAGACATGTCAGGGACATGCAT-CAGCTATGAGATGTGTCAGTGTAAGACCATGTGTGGGACA
* ** * * *
75647550 TGGCATCGGGATTGAGACAAGTGCTAGTGAAAGACACATTTAGGATATACATCGGCCTCGAGACA
65 TGGCATCGGCATTGAGA-AAGTGCTAGTGAAAGACATGTCTGGGACATACATCGGCCTCGAGACA
*
75647615 AAATCCAAA
129 AAAGCCAAA
* * * * *
75647624 GTAAGACATGTCAGGGACATGCATCAGCTATAAGATTTGTTAGTGTAAGACCATATGTGGGAGAT
1 GTAAGACATGTCAGGGACATGCATCAGCTATGAGATGTGTCAGTGTAAGACCATGTGTGGGACAT
* * * *
75647689 GGCATCGACATTGAGAAGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGACAA
66 GGCATCGGCATTGAGAA-AGTGCTAGTGAAAGACATGTCTGGGACATACATCGGCCTCGAGACAA
*
75647754 AAGACAAA
130 AAGCCAAA
* *
75647762 GTAAGACATGTCAGGGACATGCATCGGCTATGAGATGTGTCAGTGTAAGACCATGTCTGGGACAT
1 GTAAGACATGTCAGGGACATGCATCAGCTATGAGATGTGTCAGTGTAAGACCATGTGTGGGACAT
75647827 GGCATCGGCAT
66 GGCATCGGCAT
75647838 AAACATGCTA
Statistics
Matches: 297, Mismatches: 50, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
137 3 0.01
138 217 0.73
139 50 0.17
140 2 0.01
141 23 0.08
142 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (137 bp):
GTAAGACATGTCAGGGACATGCATCAGCTATGAGATGTGTCAGTGTAAGACCATGTGTGGGACAT
GGCATCGGCATTGAGAAAGTGCTAGTGAAAGACATGTCTGGGACATACATCGGCCTCGAGACAAA
AGCCAAA
Found at i:75647832 original size:46 final size:44
Alignment explanation
Indices: 75647342--75647835 Score: 160
Period size: 46 Copynumber: 10.7 Consensus size: 44
75647332 TGTGTGAGCT
* * *
75647342 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATG-AGAG-C
1 AGTGTAAGACATGTCTGGGACATGCATC-GGC-TATGA-GAAGAGTC
* * *
75647387 AAGTGTAAGACCATGTTTGGGACATGGCATCGTC-ATTGAGATGAGTTC
1 -AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGAAGAG-TC
* * * * *
75647435 TAGTGTAAAGACATGTCCGGGACATCCATCAGCCT-TGAGACGAAAGCC
1 -AGTGT-AAGACATGTCTGGGACATGCATC-GGCTATGAGA--AGAGTC
* * * ** * *
75647483 GGAGTAAGACATGTCAGGGACATGCATCCACTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAAGAGTC
* * *
75647527 AGTGTAAGACCATGTGTGAGACATGGCATCGG-GATTGAGACA-AGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGA-AGAGT-C
* ** * * * * * * *
75647574 TAGTGAAAGACACATTTAGGATATACATCGGCCT-CGAGACAAAATCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGA-AGAGT-C
** * * * *** *
75647621 AAAGTAAGACATGTCAGGGACATGCATCAGCTATAAGATTTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAAGAGTC
* * * *
75647665 AGTGTAAGACCATATGTGGGAGATGGCATCGAC-ATTGAGAAGAGTGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-TGAGAAGAGT-C
* * * *
75647712 TAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA-GACAAAAGAC
1 -AGTGTAAGACATGTCTGGGACATGCATCG-GCT--ATGAGAAGAGTC
** * * *
75647759 AAAGTAAGACATGTCAGGGACATGCATCGGCTATGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAAGAGTC
75647803 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
75647836 ATAAACATGC
Statistics
Matches: 320, Mismatches: 94, Indels: 68
0.66 0.20 0.14
Matches are distributed among these distances:
43 1 0.00
44 28 0.09
45 45 0.14
46 138 0.43
47 52 0.16
48 49 0.15
49 6 0.02
50 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAAGAGTC
Found at i:75647988 original size:23 final size:25
Alignment explanation
Indices: 75647940--75647988 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
75647930 TAAATGGTTC
* *
75647940 AACAATGAAAGTATGATTTCAAGTT
1 AACAAAGAAAGTATGATATCAAGTT
75647965 AACAAAGAAAGTAT-A-ATCAAGTT
1 AACAAAGAAAGTATGATATCAAGTT
75647988 A
1 A
75647989 TGAGTGGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 8 0.36
24 1 0.05
25 13 0.59
ACGTcount: A:0.51, C:0.08, G:0.14, T:0.27
Consensus pattern (25 bp):
AACAAAGAAAGTATGATATCAAGTT
Found at i:75658575 original size:47 final size:47
Alignment explanation
Indices: 75658524--75658882 Score: 531
Period size: 47 Copynumber: 7.6 Consensus size: 47
75658514 GATAATTGTG
* * *
75658524 ATGTGAATGTATATATATATGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
75658571 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75658618 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
75658667 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75658716 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
75658763 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * ** *
75658810 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACATGATGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
75658857 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75658883 TCCCGAAGGG
Statistics
Matches: 289, Mismatches: 19, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
46 2 0.01
47 191 0.66
48 2 0.01
49 94 0.33
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:75664055 original size:156 final size:156
Alignment explanation
Indices: 75663771--75664058 Score: 513
Period size: 156 Copynumber: 1.8 Consensus size: 156
75663761 TCTTATCCCA
* * *
75663771 TTAAATTTTGCTACTTTGGTCGATTGGTCTAAGAACATGGCTGATCATAGGAACTAATCTAAACT
1 TTAAATTTTGCTACTTTGGCCGATTGGTCTAAGAACATGGCTGATCATAGGAAATAATATAAACT
* *
75663836 CCCCAGGTCAGTGATGGCTTCAAATCATGTTTGCATCCTCGAATTGTACTAAACTGTGTAAGTAT
66 CCCCAGGTCAATGATGGCTTCAAATCATGTTTGCATCATCGAATTGTACTAAACTGTGTAAGTAT
75663901 TGCTTACCGATAGTGGATATGTTGTG
131 TGCTTACCGATAGTGGATATGTTGTG
75663927 TTAAATTTTGCTACTTTGGCCGATTGGTCTAAGAACATGGCTGATCATAGGAAATAATATAAACT
1 TTAAATTTTGCTACTTTGGCCGATTGGTCTAAGAACATGGCTGATCATAGGAAATAATATAAACT
* *
75663992 CCCTAGGTCAATGATGGCTTCAAATCGTGTTTGCATCATCGAATTGTACTAAACTGTGTAAGTAT
66 CCCCAGGTCAATGATGGCTTCAAATCATGTTTGCATCATCGAATTGTACTAAACTGTGTAAGTAT
75664057 TG
131 TG
75664059 TAATATCCTG
Statistics
Matches: 125, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
156 125 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (156 bp):
TTAAATTTTGCTACTTTGGCCGATTGGTCTAAGAACATGGCTGATCATAGGAAATAATATAAACT
CCCCAGGTCAATGATGGCTTCAAATCATGTTTGCATCATCGAATTGTACTAAACTGTGTAAGTAT
TGCTTACCGATAGTGGATATGTTGTG
Found at i:75665399 original size:46 final size:46
Alignment explanation
Indices: 75665349--75665521 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
75665339 TGGTTGAGCA
75665349 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
75665395 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAATTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
75665440 CATCCGAACTCGTTAAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
75665488 TCCGAGCTCGTTGAGTTGAGTCCGAGTGCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75665522 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 59 0.56
47 28 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:75665505 original size:93 final size:93
Alignment explanation
Indices: 75665346--75665514 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
75665336 GGATGGTTGA
*
75665346 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
75665411 TGAGTCCGAGTTCGTGAGATGTAATTAG
66 TGAGTCCGAGTTCGTGAGATGTAATTAG
* * *
75665439 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCATTTATGGATGCGAATGTCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
75665504 TGAGTCCGAGT
66 TGAGTCCGAGT
75665515 GCACTTAGGG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAATTAG
Found at i:75665783 original size:19 final size:20
Alignment explanation
Indices: 75665746--75665783 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
75665736 ATAAGGTGGT
75665746 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
75665766 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
75665784 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:75672965 original size:45 final size:45
Alignment explanation
Indices: 75672916--75673086 Score: 206
Period size: 45 Copynumber: 3.8 Consensus size: 45
75672906 TGGTTGAGCA
75672916 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
* * *
75672961 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-T--G
*
75673006 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AATG
* *
75673053 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75673087 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 8, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 6 0.06
43 1 0.01
44 2 0.02
45 58 0.54
46 3 0.03
47 32 0.30
49 4 0.04
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATG
Found at i:75673070 original size:92 final size:92
Alignment explanation
Indices: 75672913--75673081 Score: 295
Period size: 92 Copynumber: 1.8 Consensus size: 92
75672903 GGATGGTTGA
* *
75672913 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
75672978 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
75673005 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AACGCCCGAACTCGTTGAGT
75673069 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
75673082 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
91 10 0.14
92 63 0.86
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75673346 original size:19 final size:20
Alignment explanation
Indices: 75673309--75673346 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
75673299 ATAAGGTGGT
75673309 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
75673329 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
75673347 TGGTGTACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:75691374 original size:27 final size:27
Alignment explanation
Indices: 75691344--75691521 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
75691334 ATATTGAGCC
* * *
75691344 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
75691371 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
75691398 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
75691426 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
75691453 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
75691480 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
75691507 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75691522 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:75691437 original size:55 final size:55
Alignment explanation
Indices: 75691344--75691521 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
75691334 ATATTGAGCC
* * *
75691344 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
75691398 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
75691453 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
75691507 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75691522 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:75691483 original size:82 final size:81
Alignment explanation
Indices: 75691365--75691520 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
75691355 TGCTATACAA
* * *
75691365 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
75691430 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
75691447 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
75691511 CACTTAGTGC
65 CACTTAGTGC
75691521 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75699271 original size:27 final size:27
Alignment explanation
Indices: 75699241--75699418 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
75699231 ATATTGAGCC
* * *
75699241 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
75699268 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
75699295 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
75699323 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
75699350 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
75699377 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
75699404 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75699419 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:75699334 original size:55 final size:55
Alignment explanation
Indices: 75699241--75699418 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
75699231 ATATTGAGCC
* * *
75699241 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
75699295 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
75699350 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
75699404 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75699419 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:75699380 original size:82 final size:81
Alignment explanation
Indices: 75699262--75699417 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
75699252 TGCTATACAA
* * *
75699262 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
75699327 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
75699344 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
75699408 CACTTAGTGC
65 CACTTAGTGC
75699418 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:75704710 original size:94 final size:95
Alignment explanation
Indices: 75704534--75704752 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 95
75704524 TGGATATTCG
* * * *
75704534 GCCAGTGTAAGACGTGTCTGGGACATGC-TTCGGCCACATTATGAGAGCTAGTGCAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATTCAGCCACACTATGAGAGCCAGTGCAAGACCATGT
** *
75704598 CTGGGGCATGACATCGGCATCCAGACG-TG-G-
66 CTGGCACATGACACCGGCA--CAGA-GATGAGT
* * * * * *
75704628 GCTAGTGAAAGACATGTTTGGGACATGCATT-AGCCATACTATGATAGCCAGTGTAAGACCATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATTCAGCCACACTATGAGAGCCAGTGCAAGACCATGT
*
75704692 CTGGCACATGGCACCGGCACAGAGATGAGT
66 CTGGCACATGACACCGGCACAGAGATGAGT
*
75704722 GCCAGTGTAAGACATGTCTAGGACATGCATT
1 GCCAGTGTAAGACATGTCTGGGACATGCATT
75704753 TGCCTCGACA
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
91 1 0.01
92 6 0.06
93 1 0.01
94 93 0.90
95 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.22
Consensus pattern (95 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTCAGCCACACTATGAGAGCCAGTGCAAGACCATGT
CTGGCACATGACACCGGCACAGAGATGAGT
Found at i:75712256 original size:47 final size:46
Alignment explanation
Indices: 75712097--75712457 Score: 193
Period size: 47 Copynumber: 7.7 Consensus size: 46
75712087 TGGATATTCG
* * * * * * *
75712097 GCCAATGTAAGACGTGTTTGGGACATGCTTCGGCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACTATGATA
* ** * * **
75712143 GCTAGTGTAAGACCATGTCTGGGGTATGGCATCAG-CAT-CTAGGCGA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATACTATGATA
* * *
75712189 GGACTAGTGTAAGACTTGTCTGGGACATGCATCAGCCATACTATGATA
1 -G-CCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACTATGATA
* * * *
75712237 GCCAGTGTAAGACCATGTCTGGGACATGGAACTGGCACAGA-GATGAGT-
1 GCCAGTGTAAGA-CATGTCTGGGACATGCATC-GGC-CATACTATGA-TA
*
75712285 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGAC-AGAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAT--ACTA-TGATA
* * * * * *
75712332 GCCAGTGTAAGACGTGTTTGGGACATGCATTGGCTAAGAGT-TG-T-
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CATACTATGATA
* * * * * *
75712376 GCTACTGTGAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-GC-CATACTATGATA
75712424 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
75712458 ACAATATATC
Statistics
Matches: 239, Mismatches: 51, Indels: 47
0.71 0.15 0.14
Matches are distributed among these distances:
44 25 0.10
45 4 0.02
46 43 0.18
47 95 0.40
48 48 0.20
49 19 0.08
50 5 0.02
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCATACTATGATA
Found at i:75712292 original size:94 final size:91
Alignment explanation
Indices: 75712194--75712452 Score: 276
Period size: 94 Copynumber: 2.8 Consensus size: 91
75712184 GGCGAGGACT
*
75712194 AGTGTAAGACTTGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCC-TACTATGATAGCCAGTGTAAGACCATGTCTGG
75712259 GACATGGAACTGGC-ACAGAGATGAGTGCC
65 GACATGGAACTGGCTA-AGAG-T-AGTGCC
* * * *
75712288 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAC-AGAGATAGCCAGTGTAAGA-CGTGTTT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCT--ACTA-TGATAGCCAGTGTAAGACCATGTCT
* * * *
75712351 GGGACAT-GCATTGGCTAAGAGTTGTGCT
63 GGGACATGGAACTGGCTAAGAGTAGTGCC
* * *
75712379 ACTGTGAGACATGTCTGGGACATGCATCAGCACGCGTA-TATGAGAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAG--C-C-TACTATGATAGCCAGTGTAAGACCATGTC
75712443 TGGGACATGG
62 TGGGACATGG
75712453 CATCGACAAT
Statistics
Matches: 138, Mismatches: 16, Indels: 22
0.78 0.09 0.12
Matches are distributed among these distances:
91 31 0.22
92 16 0.12
93 26 0.19
94 46 0.33
95 19 0.14
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTACTATGATAGCCAGTGTAAGACCATGTCTGGG
ACATGGAACTGGCTAAGAGTAGTGCC
Found at i:75719157 original size:34 final size:34
Alignment explanation
Indices: 75719114--75719182 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
75719104 GAAAGTAAGC
75719114 TTATAGCTTAGTAAGTAAGTATATAAATAACAAA
1 TTATAGCTTAGTAAGTAAGTATATAAATAACAAA
75719148 TTATAGCTTAGTAAGTAAGTATATAAATAACAAA
1 TTATAGCTTAGTAAGTAAGTATATAAATAACAAA
75719182 T
1 T
75719183 AAGGAATCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.49, C:0.06, G:0.12, T:0.33
Consensus pattern (34 bp):
TTATAGCTTAGTAAGTAAGTATATAAATAACAAA
Found at i:75730438 original size:13 final size:13
Alignment explanation
Indices: 75730416--75730448 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75730406 AAGGGTTTGT
75730416 TTAT-TAAACTAA
1 TTATCTAAACTAA
75730428 TTATCTAAACTAA
1 TTATCTAAACTAA
*
75730441 TTAACTAA
1 TTATCTAA
75730449 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:75733372 original size:7 final size:6
Alignment explanation
Indices: 75733352--75733436 Score: 68
Period size: 6 Copynumber: 14.3 Consensus size: 6
75733342 AAGAAAATTG
* * * * *
75733352 AAATGA AAATAA AAATCA AAAGAA AAATAA GAAT-A AAATAA ATAAAAGA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA A-AATA-A
* *
75733401 AAATAA GAATAA GAAT-- AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AA
75733437 TAGGAGGATC
Statistics
Matches: 63, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
4 3 0.05
5 4 0.06
6 48 0.76
7 6 0.10
8 2 0.03
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:75733417 original size:26 final size:26
Alignment explanation
Indices: 75733364--75733438 Score: 100
Period size: 25 Copynumber: 2.8 Consensus size: 26
75733354 ATGAAAATAA
75733364 AAATCAAAAGAAAAATAAGAATAAAAT
1 AAAT-AAAAGAAAAATAAGAATAAAAT
75733391 AAATAAAAG-AAAATAAGAATAAGAAT
1 AAATAAAAGAAAAATAAGAATAA-AAT
*
75733417 AAATAAAAATAAAAATAA-AATA
1 AAAT-AAAAGAAAAATAAGAATA
75733439 GGAGGATCCA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
25 13 0.30
26 12 0.27
27 12 0.27
28 7 0.16
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.16
Consensus pattern (26 bp):
AAATAAAAGAAAAATAAGAATAAAAT
Done.