Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 224 of 345
Found at i:75733420 original size:16 final size:16
Alignment explanation
Indices: 75733371--75733435 Score: 56
Period size: 16 Copynumber: 4.6 Consensus size: 16
75733361 TAAAAATCAA
75733371 AAGAA-AAATAAGAAT
1 AAGAATAAATAAGAAT
75733386 AA-AATAAAT---AA-
1 AAGAATAAATAAGAAT
75733397 AAG-A-AAATAAGAAT
1 AAGAATAAATAAGAAT
*
75733411 AAGAATAAATAAAAAT
1 AAGAATAAATAAGAAT
*
75733427 AAAAATAAA
1 AAGAATAAA
75733436 ATAGGAGGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 15
0.70 0.04 0.26
Matches are distributed among these distances:
10 4 0.10
11 3 0.08
12 2 0.05
13 2 0.05
14 5 0.12
15 7 0.17
16 17 0.43
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (16 bp):
AAGAATAAATAAGAAT
Found at i:75739758 original size:93 final size:93
Alignment explanation
Indices: 75739643--75739813 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
75739633 GCCCCTAAGT
*
75739643 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75739708 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
75739736 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
75739801 CGAGTTCGGATGC
66 CGAGTTCGGATGC
75739814 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:75739810 original size:46 final size:46
Alignment explanation
Indices: 75739638--75739810 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
75739628 AACCCGCCCC
* * *
75739638 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
75739684 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
75739732 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
75739777 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75739811 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:75743234 original size:40 final size:40
Alignment explanation
Indices: 75743139--75743443 Score: 368
Period size: 40 Copynumber: 7.6 Consensus size: 40
75743129 CCAAGCCAAG
* * *
75743139 TGCCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AA
1 TGCCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAA
*
75743177 TGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
*
75743217 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAG
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
* * * * *
75743257 TGCCTTC-GGATCTTAGTCCGGATATAATCACTTAGGACAAA
1 TGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAA
* *
75743298 AGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
*
75743338 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAG
1 TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
* * * *
75743378 TGCCTTC-GGATCTTAGTCCGGATATAATCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCACAAA
*
75743419 AGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
75743444 CATTTGAATA
Statistics
Matches: 229, Mismatches: 29, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
38 14 0.06
39 23 0.10
40 131 0.57
41 55 0.24
42 6 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA
Found at i:75743311 original size:81 final size:79
Alignment explanation
Indices: 75743140--75743443 Score: 337
Period size: 81 Copynumber: 3.8 Consensus size: 79
75743130 CAAGCCAAGT
* * * *
75743140 GCCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAATGCCTTCGGGACATAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAATGCCTTCGGGACTTAGCCCGGATATA
* * *
75743203 GTAACTCGCACAAAT
65 ATAACTAGCACAAAA
*
75743218 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAGTGCCTTC-GGATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAA-TGCCTTCGGGA-CTTAGCCCGGATAT
* *
75743282 AATCACTTAGGACAAAA
64 AATAAC-TAGCACAAAA
75743299 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA-CAATGCCTTCGGGACTTAGCCCGGATATA
* * **
75743364 GTAACTCGCACAAGT
65 ATAACTAGCACAAAA
* * * * *
75743379 GCCTTC-GGATCTTAGTCCGGATATAATCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGATA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCAC-AATGCCTTCGGGACTTAGCCCGGATA
75743443 T
63 T
75743444 CATTTGAATA
Statistics
Matches: 194, Mismatches: 22, Indels: 17
0.83 0.09 0.07
Matches are distributed among these distances:
78 14 0.07
79 25 0.13
80 53 0.27
81 96 0.49
82 6 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (79 bp):
GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGATATAA
TAACTAGCACAAAA
Found at i:75743392 original size:121 final size:121
Alignment explanation
Indices: 75743178--75743443 Score: 505
Period size: 121 Copynumber: 2.2 Consensus size: 121
75743168 CTCGCTCAAT
*
75743178 GCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
75743243 GTAACTCGCACAAGTGCCTTCGGATCTTAGTCCGGATATAATCACTTAGGACAAAA
66 GTAACTCGCACAAGTGCCTTCGGATCTTAGTCCGGATATAATCACTTAGCACAAAA
*
75743299 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATA
1 GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
75743364 GTAACTCGCACAAGTGCCTTCGGATCTTAGTCCGGATATAATCACTTAGCACAAAA
66 GTAACTCGCACAAGTGCCTTCGGATCTTAGTCCGGATATAATCACTTAGCACAAAA
75743420 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
75743444 CATTTGAATA
Statistics
Matches: 142, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 142 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (121 bp):
GCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTAACTCGCACAAGTGCCTTCGGATCTTAGTCCGGATATAATCACTTAGCACAAAA
Found at i:75750630 original size:93 final size:93
Alignment explanation
Indices: 75750522--75750691 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
75750512 CCCCTAAGTG
*
75750522 AACTCGGAATCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
75750587 GAGTTCGGATGCCTAGTTACATTTCACA
66 GAGTTCGGATGCCTAGTTACATTTCACA
* * * *
75750615 AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTTAAC
1 AACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
75750680 GAGTTCGGATGC
66 GAGTTCGGATGC
75750692 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
AACTCGGAATCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACA
Found at i:75750688 original size:46 final size:46
Alignment explanation
Indices: 75750516--75750688 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
75750506 AACCCGCCCC
* * * *
75750516 TAAGTGAACTCGGAATCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
75750562 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCA-TCCA
*
75750613 -CA---AACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
75750655 TAAGTGAACTCGGACTCAACTTAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
75750689 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
46 58 0.55
47 28 0.27
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:75751145 original size:30 final size:30
Alignment explanation
Indices: 75751111--75751170 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
75751101 ATTTAATACG
*
75751111 AACTTTGGAAAAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
75751141 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
75751171 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:75752487 original size:13 final size:13
Alignment explanation
Indices: 75752465--75752497 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75752455 AAGGGTTTGT
75752465 TTAT-TAAACTAA
1 TTATCTAAACTAA
75752477 TTATCTAAACTAA
1 TTATCTAAACTAA
*
75752490 TTAACTAA
1 TTATCTAA
75752498 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:75758020 original size:43 final size:43
Alignment explanation
Indices: 75757972--75758053 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
75757962 CGTGTATCAC
*
75757972 ATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGCTCCG
1 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTCCG
*
75758015 ATCCATAATGAACTCGGACCACTCAACGAGCTTGGATGC
1 ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGC
75758054 CACATATCTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (43 bp):
ATCCATAATGAACTCGGACCACTCAACGAGCTCGGATGCTCCG
Found at i:75759513 original size:20 final size:20
Alignment explanation
Indices: 75759488--75759578 Score: 112
Period size: 20 Copynumber: 4.5 Consensus size: 20
75759478 TTGTATGGGA
75759488 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
*
75759508 TTTGCACTTTGGTGCCTCTG
1 TTTGCACTTCGGTGCCTCTG
* *
75759528 TTTGCACTTCAGTGCCCCTG
1 TTTGCACTTCGGTGCCTCTG
* *
75759548 TTTGCACATT-TGTGCCTTTG
1 TTTGCAC-TTCGGTGCCTCTG
*
75759568 TCTGCACTTCG
1 TTTGCACTTCG
75759579 CTACTCTTGT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
19 2 0.03
20 56 0.93
21 2 0.03
ACGTcount: A:0.08, C:0.29, G:0.22, T:0.42
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCTCTG
Found at i:75759543 original size:40 final size:40
Alignment explanation
Indices: 75759488--75759577 Score: 128
Period size: 40 Copynumber: 2.2 Consensus size: 40
75759478 TTGTATGGGA
* *
75759488 TTTGCACTTCGGTGCCTCTGTTTGCAC-TTTGGTGCCTCTG
1 TTTGCACTTCAGTGCCCCTGTTTGCACATTT-GTGCCTCTG
*
75759528 TTTGCACTTCAGTGCCCCTGTTTGCACATTTGTGCCTTTG
1 TTTGCACTTCAGTGCCCCTGTTTGCACATTTGTGCCTCTG
*
75759568 TCTGCACTTC
1 TTTGCACTTC
75759578 GCTACTCTTG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
40 42 0.93
41 3 0.07
ACGTcount: A:0.08, C:0.29, G:0.21, T:0.42
Consensus pattern (40 bp):
TTTGCACTTCAGTGCCCCTGTTTGCACATTTGTGCCTCTG
Found at i:75767531 original size:31 final size:31
Alignment explanation
Indices: 75767493--75767554 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
75767483 CCCTTTTCAT
75767493 ATTTCATATTTCATAACACTGGGCCGAAGCC
1 ATTTCATATTTCATAACACTGGGCCGAAGCC
** *
75767524 ATTTCATATTTCATATTACTGGGCTGAAGCC
1 ATTTCATATTTCATAACACTGGGCCGAAGCC
75767555 TTTACTGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.34
Consensus pattern (31 bp):
ATTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:75767822 original size:23 final size:24
Alignment explanation
Indices: 75767764--75767844 Score: 137
Period size: 24 Copynumber: 3.4 Consensus size: 24
75767754 CTAGAGGCCT
*
75767764 AGCCACTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
75767789 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
75767813 AG-CCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
75767836 AGCCCTTTT
1 AGCCCTTTT
75767845 GCACTTCCTT
Statistics
Matches: 54, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
23 23 0.43
24 27 0.50
25 4 0.07
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:75767919 original size:20 final size:20
Alignment explanation
Indices: 75767894--75767960 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
75767884 TTATGAATAC
75767894 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75767914 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
75767934 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
75767954 ACCATGT
1 ATCATGT
75767961 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:75775385 original size:34 final size:34
Alignment explanation
Indices: 75775341--75775414 Score: 139
Period size: 34 Copynumber: 2.2 Consensus size: 34
75775331 TGGTTGAACA
*
75775341 TTTCTCCTTAGTTTTTCATATTTTTAGATTAGGT
1 TTTCTTCTTAGTTTTTCATATTTTTAGATTAGGT
75775375 TTTCTTCTTAGTTTTTCATATTTTTAGATTAGGT
1 TTTCTTCTTAGTTTTTCATATTTTTAGATTAGGT
75775409 TTTCTT
1 TTTCTT
75775415 TTCTTTTCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.16, C:0.11, G:0.11, T:0.62
Consensus pattern (34 bp):
TTTCTTCTTAGTTTTTCATATTTTTAGATTAGGT
Found at i:75775429 original size:29 final size:33
Alignment explanation
Indices: 75775353--75775435 Score: 120
Period size: 34 Copynumber: 2.6 Consensus size: 33
75775343 TCTCCTTAGT
*
75775353 TTTTCATATTTTTAGATTAGGTTTTCTTCTTAGT
1 TTTTCATATTTTTAGATTAGGTTTTCTTCTTA-C
75775387 TTTTCATATTTTTAGATTAGGTTTTCTT-TT-C
1 TTTTCATATTTTTAGATTAGGTTTTCTTCTTAC
75775418 TTTTCA-A-TTTTAGATTAG
1 TTTTCATATTTTTAGATTAG
75775436 ATTTAAAATA
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
29 11 0.23
30 1 0.02
31 6 0.12
33 2 0.04
34 28 0.58
ACGTcount: A:0.19, C:0.08, G:0.11, T:0.61
Consensus pattern (33 bp):
TTTTCATATTTTTAGATTAGGTTTTCTTCTTAC
Found at i:75777843 original size:40 final size:40
Alignment explanation
Indices: 75777707--75777843 Score: 168
Period size: 40 Copynumber: 3.4 Consensus size: 40
75777697 ACTTAATATC
* ** * * *
75777707 TCACACACTAAGTTCTGTACATAGCTGAAGCTATCTCAAA
1 TCACACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
* *
75777747 TCACACACTAAGTGCAATATAGAGCTGAAGCTATGTCGAA
1 TCACACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
* *
75777787 TCGCACACTAAATGCCATATATAG-TCGAAGCTATGTCGAA
1 TCACACACTAAGTGCCATATATAGCT-GAAGCTATGTCGAA
75777827 TCACACACTAAGTGCCA
1 TCACACACTAAGTGCCA
75777844 CAAATAGTCG
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 1 0.01
40 82 0.99
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCTGAAGCTATGTCGAA
Found at i:75802449 original size:40 final size:40
Alignment explanation
Indices: 75802385--75802519 Score: 112
Period size: 40 Copynumber: 3.4 Consensus size: 40
75802375 ACTCGATATC
* ** * *
75802385 TCACACACTAAGTTCTGTACATAGCTGAAGCTAACTC-ATA
1 TCACACACTAAGTGCAATATATAGCCGAAGCTAACTCGA-A
* **
75802425 TCACACACTAAGTGCAATATATAGCCAAAGCTATGTCGAA
1 TCACACACTAAGTGCAATATATAGCCGAAGCTAACTCGAA
** * * **
75802465 TCGTACACTAAGTGCCATATATAGCCGAAGATATGTCGAA
1 TCACACACTAAGTGCAATATATAGCCGAAGCTAACTCGAA
75802505 TCGA-ACACTAAGTGC
1 TC-ACACACTAAGTGC
75802520 CACAAATAGC
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
40 78 0.99
41 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.24
Consensus pattern (40 bp):
TCACACACTAAGTGCAATATATAGCCGAAGCTAACTCGAA
Found at i:75802529 original size:40 final size:40
Alignment explanation
Indices: 75802429--75802521 Score: 150
Period size: 40 Copynumber: 2.3 Consensus size: 40
75802419 CTCATATCAC
* * *
75802429 ACACTAAGTGCAATATATAGCCAAAGCTATGTCGAATCGT
1 ACACTAAGTGCCATATATAGCCAAAGATATGTCGAATCGA
*
75802469 ACACTAAGTGCCATATATAGCCGAAGATATGTCGAATCGA
1 ACACTAAGTGCCATATATAGCCAAAGATATGTCGAATCGA
75802509 ACACTAAGTGCCA
1 ACACTAAGTGCCA
75802522 CAAATAGCTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.23
Consensus pattern (40 bp):
ACACTAAGTGCCATATATAGCCAAAGATATGTCGAATCGA
Found at i:75820075 original size:93 final size:94
Alignment explanation
Indices: 75819887--75820111 Score: 300
Period size: 93 Copynumber: 2.4 Consensus size: 94
75819877 TGTAACCCGC
* * *
75819887 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---CATTCGCATCCATAAGTGAACTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AAGCGAACTCGG
*
75819949 ACTCAACTCAATGAGCTCGGACATTCGCAT
65 ACTCAACTCAACGAGCTCGGACATTCGCAT
*
75819979 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCC-CA-CGAACTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATCCAAAGCGAACTCG
* *
75820041 GACTCAACTCAACGAGTTCGGACGTTCGCAT
64 GACTCAACTCAACGAGCTCGGACATTCGCAT
* *
75820072 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
75820112 TCAAATATCT
Statistics
Matches: 119, Mismatches: 9, Indels: 9
0.87 0.07 0.07
Matches are distributed among these distances:
92 36 0.30
93 73 0.61
94 1 0.01
95 1 0.01
96 6 0.05
97 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (94 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAAGCGAACTCGGA
CTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:75820103 original size:46 final size:46
Alignment explanation
Indices: 75819887--75820105 Score: 293
Period size: 46 Copynumber: 4.7 Consensus size: 46
75819877 TGTAACCCGC
*
75819887 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
75819933 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75819979 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
75820029 CC--CA-CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
75820072 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
75820106 AGATGCTCAA
Statistics
Matches: 153, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
42 2 0.01
43 5 0.03
44 1 0.01
45 1 0.01
46 105 0.69
47 29 0.19
48 1 0.01
49 1 0.01
50 6 0.04
51 2 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:75825666 original size:37 final size:37
Alignment explanation
Indices: 75825605--75825683 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
75825595 TTATTACGAA
* * *
75825605 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
75825642 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
75825679 GTCTT
1 GTCTT
75825684 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:75825889 original size:47 final size:47
Alignment explanation
Indices: 75825846--75826465 Score: 970
Period size: 47 Copynumber: 13.1 Consensus size: 47
75825836 TTGGCCACTC
* *
75825846 GGCCTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* *
75825893 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCGATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* * *
75825940 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* * *
75825987 GGCCTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* *
75826034 GGCCTTATCACACACATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* * *
75826081 GGCCCTATCACACACATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* *
75826128 GGCCCTATCACACATATACACTTTCACATTCATCACATCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* * *
75826175 GGCCCTATCACACATATACACTTTCACATTCATCACGTCGGCTATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* *
75826222 GGCCCTATCACACATATACACTTTCACATTCATCACGTCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
75826269 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
**
75826316 GGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
**
75826363 GGCCTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
* *
75826410 GGCCCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 GGCCTTATCAC--ACATATACACTTTCACATTCATCACATCGGCCATTA
75826459 GGCCTTA
1 GGCCTTA
75826466 CTATCATTTC
Statistics
Matches: 553, Mismatches: 18, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
47 512 0.93
49 41 0.07
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.30
Consensus pattern (47 bp):
GGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTA
Found at i:75841206 original size:24 final size:24
Alignment explanation
Indices: 75841161--75841207 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
75841151 TTTGCATGAA
*
75841161 CATATACTCATTAAGCTTTAATTT
1 CATATACTCATTAAGCTCTAATTT
*
75841185 CATAT-CTTATTAAGCCTCTAATT
1 CATATACTCATTAAG-CTCTAATT
75841208 AAATTCCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (24 bp):
CATATACTCATTAAGCTCTAATTT
Found at i:75849422 original size:53 final size:54
Alignment explanation
Indices: 75849354--75849550 Score: 175
Period size: 53 Copynumber: 3.6 Consensus size: 54
75849344 TTTCCTTTTT
* * * *
75849354 GAACTTACCATTGCCATGTCTTGATATGGTCTTACTTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATA
* *
75849407 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATAGG-A-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTAC-TTGGTATCC-TTGCCTTATA
* * * * * * * *
75849461 GTAAGTCATCAATGCCATGTCTTTACATGGTCTTACATGATTTCCTTTCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATA
* * * * *
75849516 TAACTTATCAATGCCATGCCTTGGCATGGTTTTAC
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTAC
75849551 ATGATGTCCT
Statistics
Matches: 115, Mismatches: 23, Indels: 11
0.77 0.15 0.07
Matches are distributed among these distances:
52 2 0.02
53 40 0.35
54 33 0.29
55 38 0.33
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACTTGGTATCCTTGCCTTATA
Found at i:75849494 original size:55 final size:55
Alignment explanation
Indices: 75849365--75849552 Score: 181
Period size: 55 Copynumber: 3.5 Consensus size: 55
75849355 AACTTACCAT
* * * *
75849365 TGCCATGTCTTGATATGGTCTTAC-TTGGTATCC-TTGCCTTAT-G-AACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATAGG-A-CCTTTGCCTTATAGTAACTCATCAA
* *
75849418 TGCCATGCCTTGGCATGGTCTTACATAGGACCTTTGCCTTATAGTAAGTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATAGGACCTTTGCCTTATAGTAACTCATCAA
* * *** *
75849473 TGCCATGTCTTTACATGGTCTTACATGATTTCCTTT-CCTTATA-TAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACAT-AGGACCTTTGCCTTATAGTAACTCATCAA
* *
75849527 TGCCATGCCTTGGCATGGTTTTACAT
1 TGCCATGCCTTGACATGGTCTTACAT
75849553 GATGTCCTTA
Statistics
Matches: 112, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
52 2 0.02
53 31 0.28
54 35 0.31
55 38 0.34
56 6 0.05
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.38
Consensus pattern (55 bp):
TGCCATGCCTTGACATGGTCTTACATAGGACCTTTGCCTTATAGTAACTCATCAA
Found at i:75849551 original size:54 final size:56
Alignment explanation
Indices: 75849365--75849561 Score: 208
Period size: 54 Copynumber: 3.6 Consensus size: 56
75849355 AACTTACCAT
* ** * * * *
75849365 TGCCATGTCTTGATATGGTCTTACTTGGTATCC-TTGCCTTAT-G-AACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGTCCTTTGCCTTATAGTAACTCATCAA
* * *
75849418 TGCCATGCCTTGGCATGGTCTTACAT-AGGACCTTTGCCTTATAGTAAGTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGTCCTTTGCCTTATAGTAACTCATCAA
* ** * *
75849473 TGCCATGTCTTTACATGGTCTTACATGATTTCCTTT-CCTTATA-TAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGTCCTTTGCCTTATAGTAACTCATCAA
*
75849527 TGCCATGCCTTGGCATGGTTTTACATGATGTCCTT
1 TGCCATGCCTTGGCATGGTCTTACATGATGTCCTT
75849562 ATCTTACCAA
Statistics
Matches: 117, Mismatches: 23, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
52 2 0.02
53 31 0.26
54 40 0.34
55 38 0.32
56 6 0.05
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (56 bp):
TGCCATGCCTTGGCATGGTCTTACATGATGTCCTTTGCCTTATAGTAACTCATCAA
Found at i:75849656 original size:47 final size:47
Alignment explanation
Indices: 75849540--75849658 Score: 193
Period size: 47 Copynumber: 2.5 Consensus size: 47
75849530 CATGCCTTGG
* * * * *
75849540 CATGGTTTTACATGATGTCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTCCAAA
75849587 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTCCAAA
75849634 CATGGTCTTACATGGTATCCTTGTC
1 CATGGTCTTACATGGTATCCTTGTC
75849659 CTAGTGCCAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCACGTTCCAAA
Found at i:75851517 original size:18 final size:18
Alignment explanation
Indices: 75851494--75851603 Score: 114
Period size: 18 Copynumber: 6.1 Consensus size: 18
75851484 TAAATAAAGG
*
75851494 TACTGAATAACTGACTGC
1 TACTGAATAACTGACTGT
* *
75851512 TACTGAATAACTAATTGT
1 TACTGAATAACTGACTGT
* **
75851530 TACTGGATAACTGACTAC
1 TACTGAATAACTGACTGT
*
75851548 TACTGAATAATTGACTGT
1 TACTGAATAACTGACTGT
* * *
75851566 TATTGAATAATTTA-TAGT
1 TACTGAATAACTGACT-GT
75851584 TACTGAATAACTGACTGT
1 TACTGAATAACTGACTGT
75851602 TA
1 TA
75851604 AAGAGTGACT
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
17 1 0.01
18 71 0.97
19 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (18 bp):
TACTGAATAACTGACTGT
Found at i:75851563 original size:54 final size:54
Alignment explanation
Indices: 75851494--75851599 Score: 149
Period size: 54 Copynumber: 2.0 Consensus size: 54
75851484 TAAATAAAGG
* *
75851494 TACTGAATAACTGACTGCTACTGAATAACTAATTGTTACTGGATAACTGACTAC
1 TACTGAATAACTGACTGCTACTGAATAACTAATAGTTACTGAATAACTGACTAC
* * * * *
75851548 TACTGAATAATTGACTGTTATTGAATAATTTATAGTTACTGAATAACTGACT
1 TACTGAATAACTGACTGCTACTGAATAACTAATAGTTACTGAATAACTGACT
75851600 GTTAAAGAGT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (54 bp):
TACTGAATAACTGACTGCTACTGAATAACTAATAGTTACTGAATAACTGACTAC
Found at i:75857950 original size:68 final size:67
Alignment explanation
Indices: 75857878--75858027 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
75857868 CATCATGTGT
* * * *
75857878 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
75857940 ATGTAG
62 ATGTAG
** * *
75857946 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
75858011 AG
66 AG
75858013 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
75858028 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:75857983 original size:64 final size:64
Alignment explanation
Indices: 75857902--75858085 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
75857892 AGACATTATG
* *
75857902 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
75857966 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
75858031 AA
63 AA
* * * * *
75858033 ACTG--GCTAGGTCACAAGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
75858086 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 8 0.08
66 15 0.15
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:75870507 original size:25 final size:25
Alignment explanation
Indices: 75870463--75870511 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
75870453 TTATAATATG
* * *
75870463 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
75870488 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
75870512 GTTTAATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:75870566 original size:10 final size:10
Alignment explanation
Indices: 75870551--75870611 Score: 50
Period size: 10 Copynumber: 5.9 Consensus size: 10
75870541 TTGTTATTAT
75870551 ACATGATATG
1 ACATGATATG
75870561 ACATGATATG
1 ACATGATATG
*
75870571 CACATGATACG
1 -ACATGATATG
*** *
75870582 TTTTGATATTC
1 ACATGATA-TG
75870593 ACATGATATG
1 ACATGATATG
*
75870603 CCATGATAT
1 ACATGATAT
75870612 ACTCATTATA
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
10 24 0.63
11 14 0.37
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (10 bp):
ACATGATATG
Found at i:75870576 original size:21 final size:21
Alignment explanation
Indices: 75870551--75870611 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
75870541 TTGTTATTAT
75870551 ACATGATATGACATGATATGC
1 ACATGATATGACATGATATGC
* *** *
75870572 ACATGATACGTTTTGATATTC
1 ACATGATATGACATGATATGC
*
75870593 ACATGATATGCCATGATAT
1 ACATGATATGACATGATAT
75870612 ACTCATTATA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Consensus pattern (21 bp):
ACATGATATGACATGATATGC
Found at i:75873432 original size:40 final size:40
Alignment explanation
Indices: 75873256--75873478 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
75873246 TCCTCGTTCA
* * * * *
75873256 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
75873295 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
75873335 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
75873375 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
75873415 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
75873455 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
75873479 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:75993250 original size:39 final size:40
Alignment explanation
Indices: 75993096--75993320 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
75993086 GCTCCTCGTT
* *
75993096 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75993136 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
75993176 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
75993216 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75993255 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75993296 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75993321 CATCATTCAA
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 117 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75993280 original size:119 final size:120
Alignment explanation
Indices: 75993098--75993320 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
75993088 TCCTCGTTCA
*
75993098 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
75993163 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACC
* * **
75993218 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
75993280 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
75993321 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACC
Found at i:76001176 original size:119 final size:120
Alignment explanation
Indices: 76000994--76001216 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
76000984 TCCTCGTTCA
*
76000994 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
76001059 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
76001114 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
76001176 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
76001217 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:76001216 original size:40 final size:40
Alignment explanation
Indices: 76000992--76001216 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
76000982 GCTCCTCGTT
* *
76000992 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
76001032 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
76001072 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
76001112 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
76001151 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
76001192 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76001217 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:76003627 original size:41 final size:40
Alignment explanation
Indices: 76003450--76003632 Score: 215
Period size: 40 Copynumber: 4.6 Consensus size: 40
76003440 AACCCAAGTA
* * * *
76003450 CCTTCGGGATTTA-ACCGGATATAGCAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * *
76003489 CCTTTAGAACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
76003529 CCTTTGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
76003569 CCTTCGGGACTTTGCCCGTATATAGTCACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAA-TG
*
76003610 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
76003633 CATCCGAATA
Statistics
Matches: 121, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 9 0.07
40 90 0.74
41 22 0.18
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76007927 original size:20 final size:20
Alignment explanation
Indices: 76007902--76007942 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
76007892 CTAAATTGAT
* *
76007902 AACTTAGGAAATTTTTGGAA
1 AACTTAGAAAATTTTTCGAA
76007922 AACTTAGAAAATTTTTCGAA
1 AACTTAGAAAATTTTTCGAA
76007942 A
1 A
76007943 TACAGGGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (20 bp):
AACTTAGAAAATTTTTCGAA
Found at i:76008292 original size:121 final size:121
Alignment explanation
Indices: 76008078--76008327 Score: 428
Period size: 121 Copynumber: 2.1 Consensus size: 121
76008068 CAACCAGTCG
* * *
76008078 CCCGTGTGACTAGCCCATGTACCCTTCGAAATGGCCACACATGCCCGTGTGCCAAGCCGTGTACT
1 CCCGTGTGACTAGCCCATGTACCCTTCAAAATGGCCACACACGCCCGTGTGCCAAGCCATGTACT
76008143 AGGGTGTGCCAAAAATATAGGGTATACTAACTTATGCCACACGGCCAAGTCACACA
66 AGGGTGTGCCAAAAATATAGGGTATACTAACTTATGCCACACGGCCAAGTCACACA
* *
76008199 CCCGTGTGACTAGCCCATGTACCCTTCAAAATGGCCACACACGCCCGTGTGCCAGGCCATGTGCT
1 CCCGTGTGACTAGCCCATGTACCCTTCAAAATGGCCACACACGCCCGTGTGCCAAGCCATGTACT
* * *
76008264 AGGGTGTGGCAAAACTATAGGGTATACTAACTTATGCCACACGGCCAAGTCACACG
66 AGGGTGTGCCAAAAATATAGGGTATACTAACTTATGCCACACGGCCAAGTCACACA
76008320 CCCGTGTG
1 CCCGTGTG
76008328 CTGAGCTGTG
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 121 1.00
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (121 bp):
CCCGTGTGACTAGCCCATGTACCCTTCAAAATGGCCACACACGCCCGTGTGCCAAGCCATGTACT
AGGGTGTGCCAAAAATATAGGGTATACTAACTTATGCCACACGGCCAAGTCACACA
Found at i:76011647 original size:42 final size:42
Alignment explanation
Indices: 76011587--76011668 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
76011577 GTAAAAAGAC
76011587 GAGGTAAGTACTTCTGATTACTTAGTAAACGTTAGAATGAAT
1 GAGGTAAGTACTTCTGATTACTTAGTAAACGTTAGAATGAAT
*
76011629 GAGGTAAGTACTTTTGATTACTTAGTAAACGTTAGAATGA
1 GAGGTAAGTACTTCTGATTACTTAGTAAACGTTAGAATGA
76011669 GCATGAAACC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (42 bp):
GAGGTAAGTACTTCTGATTACTTAGTAAACGTTAGAATGAAT
Found at i:76013718 original size:29 final size:29
Alignment explanation
Indices: 76013685--76013744 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
76013675 GTATTCAAAA
76013685 TTAACTCATTTATTCATTAATTCATTCAG
1 TTAACTCATTTATTCATTAATTCATTCAG
76013714 TTAACTCATTTATTCATTAATTCATTCAG
1 TTAACTCATTTATTCATTAATTCATTCAG
76013743 TT
1 TT
76013745 TAGTCCACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.03, T:0.50
Consensus pattern (29 bp):
TTAACTCATTTATTCATTAATTCATTCAG
Found at i:76015708 original size:30 final size:30
Alignment explanation
Indices: 76015672--76015732 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
76015662 TCCTTAACTC
76015672 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
76015702 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
76015732 A
1 A
76015733 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:76020142 original size:30 final size:30
Alignment explanation
Indices: 76020108--76020168 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76020098 TCCTTAACTC
76020108 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76020138 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76020168 A
1 A
76020169 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76031421 original size:40 final size:40
Alignment explanation
Indices: 76031233--76031414 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 40
76031223 AATGGTGTCT
* * * *
76031233 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* * * *
76031273 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTTC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
76031313 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
76031352 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
76031392 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
76031415 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
39 33 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:76031436 original size:79 final size:79
Alignment explanation
Indices: 76031283--76031437 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
76031273 GGACTAAGAT
** **
76031283 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
76031348 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
76031362 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
76031425 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
76031438 ATTCCAAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:76037424 original size:29 final size:31
Alignment explanation
Indices: 76037383--76037441 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 31
76037373 TAAAATTTAA
* *
76037383 TATCTCCACATTT-ATCTATTAGAATAAATAC
1 TATCTCCACATTTCATCCATCAG-ATAAATAC
76037414 TATCT-CA-ATTTCATCCATCAGATAAATA
1 TATCTCCACATTTCATCCATCAGATAAATA
76037442 GATACACATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 11 0.44
30 9 0.36
31 5 0.20
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.37
Consensus pattern (31 bp):
TATCTCCACATTTCATCCATCAGATAAATAC
Found at i:76037887 original size:21 final size:20
Alignment explanation
Indices: 76037863--76037901 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
76037853 CTTGTATATT
*
76037863 TATCAACAAGCATTCAAAATC
1 TATCAACAAACA-TCAAAATC
*
76037884 TATCATCAAACATCAAAA
1 TATCAACAAACATCAAAA
76037902 CACATGTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.51, C:0.23, G:0.03, T:0.23
Consensus pattern (20 bp):
TATCAACAAACATCAAAATC
Found at i:76045980 original size:41 final size:41
Alignment explanation
Indices: 76045910--76045987 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
76045900 AAATGCAGTC
* *** *
76045910 TAGGGCCTAAGCCCATTACAGTTTTAGTATCATATATGCAT
1 TAGGGCCTAAGCCCATCACAGTCACAGTATCAAATATGCAT
*
76045951 TAGGGCCTAAGCCCATCATAGTCACAGTATCAAATAT
1 TAGGGCCTAAGCCCATCACAGTCACAGTATCAAATAT
76045988 ATACTCCTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (41 bp):
TAGGGCCTAAGCCCATCACAGTCACAGTATCAAATATGCAT
Found at i:76060597 original size:25 final size:25
Alignment explanation
Indices: 76060554--76060601 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76060544 TTATAGTATG
* * *
76060554 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
76060579 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
76060602 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:76060676 original size:20 final size:20
Alignment explanation
Indices: 76060648--76060744 Score: 149
Period size: 20 Copynumber: 4.8 Consensus size: 20
76060638 ACAATATTGA
76060648 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
*
76060668 TATGGTATGCACATGATATG
1 TATGATATGCACATGATATG
76060688 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
**
76060708 TACAATATGCACATGATATG
1 TATGATATGCACATGATATG
**
76060728 TACAATATGCACATGAT
1 TATGATATGCACATGAT
76060745 GTATTCATAA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 73 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:76060824 original size:26 final size:26
Alignment explanation
Indices: 76060795--76060891 Score: 142
Period size: 26 Copynumber: 3.8 Consensus size: 26
76060785 AGGAAGTGCA
*
76060795 AAAGGGCTTATGCCCTAGTTTACCGG
1 AAAGGGCTTATGCCCCAGTTTACCGG
** *
76060821 AAAGGGCTTATGCCCCAGTTTATTGA
1 AAAGGGCTTATGCCCCAGTTTACCGG
76060847 AAAGGGCTTATGCCCCAGTTTACC-G
1 AAAGGGCTTATGCCCCAGTTTACCGG
*
76060872 AAAGGGCTTTTGCCCCAGTT
1 AAAGGGCTTATGCCCCAGTT
76060892 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 19 0.30
26 44 0.70
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.28
Consensus pattern (26 bp):
AAAGGGCTTATGCCCCAGTTTACCGG
Found at i:76060904 original size:25 final size:25
Alignment explanation
Indices: 76060794--76060904 Score: 116
Period size: 26 Copynumber: 4.4 Consensus size: 25
76060784 GAGGAAGTGC
* **
76060794 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTA-TT
*
76060820 GAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
**
76060845 GAAAAGGGCTTATGCCCCAGTTTACC
1 -AAAAGGGCTTATGCCCCAGTTTATT
* *
76060871 GAAAGGGCTTTTGCCCCAG-TTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
76060895 AAAAGAGGCT
1 AAAAG-GGCT
76060905 AGGCCTCCAG
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
24 7 0.10
25 21 0.30
26 43 0.61
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTTATT
Found at i:76067711 original size:11 final size:11
Alignment explanation
Indices: 76067697--76067769 Score: 68
Period size: 11 Copynumber: 7.2 Consensus size: 11
76067687 TATTGATATC
76067697 ATATGCACATG
1 ATATGCACATG
*
76067708 ATATG--TATG
1 ATATGCACATG
*
76067717 GTATGCACATG
1 ATATGCACATG
*
76067728 ATATG--TATG
1 ATATGCACATG
76067737 ATATGCACATG
1 ATATGCACATG
*
76067748 ATATGTAC--G
1 ATATGCACATG
76067757 ATATGCACATG
1 ATATGCACATG
76067768 AT
1 AT
76067770 GTATTCATAA
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
9 23 0.48
11 25 0.52
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (11 bp):
ATATGCACATG
Found at i:76067723 original size:20 final size:20
Alignment explanation
Indices: 76067697--76067769 Score: 128
Period size: 20 Copynumber: 3.6 Consensus size: 20
76067687 TATTGATATC
76067697 ATATGCACATGATATGTATG
1 ATATGCACATGATATGTATG
*
76067717 GTATGCACATGATATGTATG
1 ATATGCACATGATATGTATG
*
76067737 ATATGCACATGATATGTACG
1 ATATGCACATGATATGTATG
76067757 ATATGCACATGAT
1 ATATGCACATGAT
76067770 GTATTCATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 50 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ATATGCACATGATATGTATG
Found at i:76067848 original size:26 final size:26
Alignment explanation
Indices: 76067819--76067916 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
76067809 GAGGAAGTGC
*
76067819 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
76067845 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
76067871 AAAAGGGCTTATGCCCCAGTTTACC-
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
76067896 AAAAGGGCTTTTGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
76067917 ATTTAAAGAG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
25 20 0.30
26 46 0.70
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:76067929 original size:25 final size:25
Alignment explanation
Indices: 76067819--76067929 Score: 125
Period size: 26 Copynumber: 4.4 Consensus size: 25
76067809 GAGGAAGTGC
* **
76067819 AAAAGGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTA-TT
76067845 AAAAGGGCTTATGCCCCAGTTTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
**
76067870 GAAAAGGGCTTATGCCCCAGTTTACC
1 -AAAAGGGCTTATGCCCCAGTTTATT
*
76067896 AAAAGGGCTTTTGCCCCAG-TTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
*
76067920 TAAAGAGGCT
1 AAAAG-GGCT
76067930 AGGCCTCTAG
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
24 7 0.09
25 22 0.30
26 45 0.61
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTATGCCCCAGTTTATT
Found at i:76071959 original size:46 final size:45
Alignment explanation
Indices: 76071909--76072084 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
76071899 TGGTTGAGCA
76071909 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
76071955 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
76072002 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
76072048 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76072085 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:76072065 original size:93 final size:93
Alignment explanation
Indices: 76071906--76072076 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
76071896 GGATGGTTGA
* *
76071906 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76071971 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
76071999 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76072064 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76072077 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:76074821 original size:40 final size:40
Alignment explanation
Indices: 76074723--76074985 Score: 411
Period size: 40 Copynumber: 6.6 Consensus size: 40
76074713 TCCTCGTTCA
* * * * *
76074723 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76074762 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
76074802 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
76074842 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76074882 ACTGCCTTCGGGACTTAACCCGGATTTAATATCTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76074922 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
76074962 AATGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76074986 CAGCATTCAA
Statistics
Matches: 207, Mismatches: 16, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
39 34 0.16
40 173 0.84
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:76080434 original size:15 final size:15
Alignment explanation
Indices: 76080406--76080445 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
76080396 GGCATTCGCT
*
76080406 ATCCA-TAGCTTTAA
1 ATCCAGTAGCCTTAA
76080420 ATCCAGTAGCCTTAA
1 ATCCAGTAGCCTTAA
*
76080435 ATTCAGTAGCC
1 ATCCAGTAGCC
76080446 CCATGTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 5 0.22
15 18 0.78
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (15 bp):
ATCCAGTAGCCTTAA
Found at i:76082361 original size:40 final size:40
Alignment explanation
Indices: 76082263--76082526 Score: 318
Period size: 40 Copynumber: 6.6 Consensus size: 40
76082253 TCCTCGTTCA
* * * * *
76082263 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76082302 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
76082342 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
76082382 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
76082422 AATGCCTTCGGGACTTAACCCGGATTTAAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-TAACTCGCACG
* * * * * *
76082463 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
76082503 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76082527 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 34 0.17
40 127 0.64
41 38 0.19
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:76086608 original size:20 final size:20
Alignment explanation
Indices: 76086575--76086612 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76086565 ACCAATTGTG
*
76086575 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
76086595 CATGTGATGGTTAAATGT
1 CATGTGATGCTTAAATGT
76086613 GGTATATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:76087215 original size:28 final size:29
Alignment explanation
Indices: 76087175--76087229 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
76087165 CACAAGCGAT
*
76087175 GACACGGGCGTGT-CTAGGCCGTGTGAGG
1 GACACGGACGTGTGCTAGGCCGTGTGAGG
* *
76087203 GACACGGACGTGTGCTCGGTCGTGTGA
1 GACACGGACGTGTGCTAGGCCGTGTGA
76087230 AAACCCCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.15, C:0.22, G:0.44, T:0.20
Consensus pattern (29 bp):
GACACGGACGTGTGCTAGGCCGTGTGAGG
Found at i:76096906 original size:17 final size:19
Alignment explanation
Indices: 76096884--76096924 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
76096874 GGCTCATTAT
76096884 TGATTTATAT-TT-TAATA
1 TGATTTATATATTATAATA
*
76096901 TGATTTATATATTATATTA
1 TGATTTATATATTATAATA
76096920 TGATT
1 TGATT
76096925 AATAAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 2 0.10
19 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
TGATTTATATATTATAATA
Found at i:76102190 original size:16 final size:16
Alignment explanation
Indices: 76102169--76102199 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76102159 GTATGGTTAA
*
76102169 ATAAGTTAATTAAATT
1 ATAAGTTAATAAAATT
76102185 ATAAGTTAATAAAAT
1 ATAAGTTAATAAAAT
76102200 ATATTATAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
ATAAGTTAATAAAATT
Found at i:76103335 original size:13 final size:13
Alignment explanation
Indices: 76103317--76103342 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76103307 GCCAGGTATG
76103317 ATTTAACTCGTTA
1 ATTTAACTCGTTA
76103330 ATTTAACTCGTTA
1 ATTTAACTCGTTA
76103343 CCTATTTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (13 bp):
ATTTAACTCGTTA
Found at i:76105123 original size:17 final size:19
Alignment explanation
Indices: 76105101--76105141 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 19
76105091 GGTTCGTTAT
76105101 TGATTTATAT-TT-TAATA
1 TGATTTATATATTATAATA
*
76105118 TGATTTATATATTATATTA
1 TGATTTATATATTATAATA
76105137 TGATT
1 TGATT
76105142 AATAAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 10 0.48
18 2 0.10
19 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (19 bp):
TGATTTATATATTATAATA
Found at i:76120581 original size:71 final size:71
Alignment explanation
Indices: 76120465--76120617 Score: 261
Period size: 71 Copynumber: 2.2 Consensus size: 71
76120455 TGATGGCTTG
* *
76120465 CAGGCCGTGTGGGAGGCATAGGATCAGACAAATGGGCCGTGTGGACCACACAGACCCGTAGGAAT
1 CAGGCCGTGTGGGACGCACAGGATCAGACAAATGGGCCGTGTGGACCACACAGACCCGTAGGAAT
76120530 CTAGGC
66 CTAGGC
* * *
76120536 CAGGCCGTGTGGGACGCACAGGATCAGACAAATGGGCCGTGTGGACCATACGGACGCGTAGGAAT
1 CAGGCCGTGTGGGACGCACAGGATCAGACAAATGGGCCGTGTGGACCACACAGACCCGTAGGAAT
76120601 CTAGGC
66 CTAGGC
76120607 CAGGCCGTGTG
1 CAGGCCGTGTG
76120618 ATCCACACGG
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 77 1.00
ACGTcount: A:0.25, C:0.24, G:0.37, T:0.14
Consensus pattern (71 bp):
CAGGCCGTGTGGGACGCACAGGATCAGACAAATGGGCCGTGTGGACCACACAGACCCGTAGGAAT
CTAGGC
Found at i:76130748 original size:18 final size:17
Alignment explanation
Indices: 76130716--76130755 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
76130706 ATAAAAAATA
76130716 ATTAAAATCATATTTAT
1 ATTAAAATCATATTTAT
*
76130733 ATTAAATATTATATTTAT
1 ATTAAA-ATCATATTTAT
76130751 ATTAA
1 ATTAA
76130756 TGTTAAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTAAAATCATATTTAT
Found at i:76130953 original size:21 final size:22
Alignment explanation
Indices: 76130920--76130960 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
76130910 CTTATTCATC
* *
76130920 ATTATCTATTACTTTGTTTTGA
1 ATTAACTATTACTATGTTTTGA
76130942 ATTAACTA-TACTATGTTTT
1 ATTAACTATTACTATGTTTT
76130961 CCATTCTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.56
Consensus pattern (22 bp):
ATTAACTATTACTATGTTTTGA
Found at i:76132415 original size:16 final size:17
Alignment explanation
Indices: 76132394--76132426 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
76132384 TATCATAAGC
76132394 AATTGTGATAA-AATTA
1 AATTGTGATAATAATTA
*
76132410 AATTGTTATAATAATTA
1 AATTGTGATAATAATTA
76132427 TTTCTATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (17 bp):
AATTGTGATAATAATTA
Found at i:76135577 original size:90 final size:91
Alignment explanation
Indices: 76135468--76135654 Score: 268
Period size: 90 Copynumber: 2.1 Consensus size: 91
76135458 ATAATGAAAA
*** *
76135468 AATTTGTATGGTGGCAATAATAATTAATAATAGTGACATGATATGTTATCACTATTACATCAATT
1 AATTTGTATGGCCACAATAATAATTAATAATAGTGACATGATATGATATCACTATTACATCAATT
*
76135533 CTC-AAGAAAAAAAAAACTTGAAGGC
66 CTCGAAGAAAAAAAAAACTTGAACGC
* * * *
76135558 AATTTGTATGGCCACAATAATAATTAATAATAGTGACTTTATATGATGTCACTATTACATCATTT
1 AATTTGTATGGCCACAATAATAATTAATAATAGTGACATGATATGATATCACTATTACATCAATT
* *
76135623 CTCGAGGAAAAAAAAAACTTGGACGC
66 CTCGAAGAAAAAAAAAACTTGAACGC
76135649 AATTTG
1 AATTTG
76135655 AACATTTTAT
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
90 60 0.71
91 25 0.29
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.32
Consensus pattern (91 bp):
AATTTGTATGGCCACAATAATAATTAATAATAGTGACATGATATGATATCACTATTACATCAATT
CTCGAAGAAAAAAAAAACTTGAACGC
Found at i:76144907 original size:26 final size:25
Alignment explanation
Indices: 76144850--76144907 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
76144840 ATTCTTATTT
* *
76144850 TATTTTTATATCATTATATTTTATC
1 TATTTTTATATCATTATATTATATA
* *
76144875 CACTTTTTATATTATTATTATTATATA
1 TA-TTTTTATATCATTA-TATTATATA
76144902 TATTTT
1 TATTTT
76144908 AATCTTACTT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
25 1 0.04
26 17 0.65
27 8 0.31
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (25 bp):
TATTTTTATATCATTATATTATATA
Found at i:76157237 original size:69 final size:69
Alignment explanation
Indices: 76157063--76157237 Score: 217
Period size: 70 Copynumber: 2.5 Consensus size: 69
76157053 CTTTCCAAGG
* ** *
76157063 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
76157128 TTTT
66 TTTT
* ** * *
76157132 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-
76157197 TGTTTT
64 TGTTTT
** *
76157203 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
76157238 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
69 31 0.34
70 55 0.60
71 5 0.05
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:76157379 original size:76 final size:71
Alignment explanation
Indices: 76157248--76157585 Score: 403
Period size: 76 Copynumber: 4.6 Consensus size: 71
76157238 TTTAATTTTT
* *
76157248 TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
76157313 TTTCTG
66 TTTCTG
* **
76157319 TTGTTAAAAAAAAATTAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAAT
1 TT-TT----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
76157384 TTCAATTTCTG
61 TTCAATTTCTG
* * ** * *
76157395 TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCA-GACACGTTGAGGTATTTTCA
1 TTTT-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
76157459 ATTTCTG
65 ATTTCTG
* * *
76157466 TTTTCAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGT-ATTT
1 TTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTT
76157529 CAATTTCTG
63 CAATTTCTG
*
76157538 TTTTTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 -TTTT---AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
76157586 ATTACACTGT
Statistics
Matches: 232, Mismatches: 21, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
70 35 0.15
71 31 0.13
72 50 0.22
73 14 0.06
75 2 0.01
76 99 0.43
77 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.33
Consensus pattern (71 bp):
TTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAA
TTTCTG
Found at i:76177923 original size:69 final size:68
Alignment explanation
Indices: 76177751--76177923 Score: 213
Period size: 68 Copynumber: 2.5 Consensus size: 68
76177741 CTTTCCAAGG
* **
76177751 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTT
76177816 TTT
66 TTT
* ** *
76177819 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT-ATTTTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTT-
76177883 TGTTT
65 T-TTT
* ** * *
76177888 TAAATTGACTTATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
76177924 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
67 5 0.06
68 52 0.58
69 33 0.37
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.35
Consensus pattern (68 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTT
TTT
Found at i:76178062 original size:74 final size:73
Alignment explanation
Indices: 76177940--76178274 Score: 426
Period size: 74 Copynumber: 4.5 Consensus size: 73
76177930 TTTTTTTTTC
*
76177940 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
76178005 GTTGTTAAA
66 GTT-TTAAA
** *
76178014 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
76178079 GTTTT-CA
66 GTTTTAAA
* * ** * * *
76178086 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
76178151 GTTTTCAAAAA
66 GTTTT---AAA
* * *
76178162 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
76178226 TCTGTTTTTAAA
63 TCTG-TTTTAAA
*
76178238 AAAA--AACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
76178275 ATTACACACT
Statistics
Matches: 232, Mismatches: 20, Indels: 17
0.86 0.07 0.06
Matches are distributed among these distances:
72 65 0.28
73 2 0.01
74 93 0.40
75 2 0.01
76 42 0.18
78 24 0.10
79 4 0.02
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAA
Found at i:76178592 original size:73 final size:73
Alignment explanation
Indices: 76178493--76178684 Score: 298
Period size: 73 Copynumber: 2.6 Consensus size: 73
76178483 AATTTCTATT
* *
76178493 TTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
76178558 AATTTCTG
66 AATTTCTG
*
76178566 CTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 -TTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTT
76178630 CAATTTCTG
65 CAATTTCTG
* *
76178639 TTGTCAAAAAAATCAACTCATATTGCGA-AAAGTGAGTTGAGCCTCA
1 TTTTC-AAAAATTCAACTCATATTGCGAGAAA-TGAGTTGAGCCTCA
76178685 GTTCACATGT
Statistics
Matches: 110, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
72 4 0.04
73 67 0.61
74 39 0.35
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (73 bp):
TTTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTC
AATTTCTG
Found at i:76186320 original size:51 final size:51
Alignment explanation
Indices: 76186215--76186390 Score: 167
Period size: 51 Copynumber: 3.5 Consensus size: 51
76186205 CGGATGCCCG
* * * *
76186215 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTT-CAAAAA
1 GTGGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTATCTT-TTACACATA
* *
76186266 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTATCTTTTACACATA
* * * * * ***
76186317 GTGGTCTGCACTTCGTACCACACATGTGATCGAAGCTATCAGGTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTATCTTTTACACATA
* * *
76186368 GTAGCCTGCACTTAGTACTACAC
1 GTGGCCTGCACATAGTACCACAC
76186391 ACGCGACCTA
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
50 2 0.02
51 100 0.97
52 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTATCTTTTACACATA
Found at i:76186420 original size:50 final size:52
Alignment explanation
Indices: 76186309--76186493 Score: 187
Period size: 50 Copynumber: 3.6 Consensus size: 52
76186299 AGCTATCTTT
* * * * * * * * * *
76186309 TACACATAGTGGTCTGCACTTCGTACCACACATGTGATC-GAAGCTATCAGG
1 TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAAAGCCATCTGG
76186360 TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT-AA-CCATCTGG
1 TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAAAGCCATCTGG
* * * **
76186410 TACACATAGTAGCCTGTACTTAGTACTACACACGTGACCTAAAGCCATTTTA
1 TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAAAGCCATCTGG
* * *
76186462 AACACATAGTAGCTTGCACATAGTACTACACA
1 TACACATAGTAGCCTGCACTTAGTACTACACA
76186494 TGTGTTCTCA
Statistics
Matches: 113, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
50 44 0.39
51 36 0.32
52 33 0.29
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (52 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAAAGCCATCTGG
Found at i:76189369 original size:20 final size:20
Alignment explanation
Indices: 76189346--76189386 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
76189336 AAAAAATGAC
76189346 TAAATTAATAGAAATAAAGT
1 TAAATTAATAGAAATAAAGT
76189366 TAAATTAATAGAAATAAAGT
1 TAAATTAATAGAAATAAAGT
76189386 T
1 T
76189387 TTCCTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (20 bp):
TAAATTAATAGAAATAAAGT
Found at i:76194309 original size:27 final size:27
Alignment explanation
Indices: 76194278--76194397 Score: 116
Period size: 27 Copynumber: 4.5 Consensus size: 27
76194268 TTAAATCACT
*
76194278 ACAAAGGCTTCTAACTCATAGATTGCC
1 ACAAAGGCTTCCAACTCATAGATTGCC
*
76194305 ACAAAGGCTTCCATCTCATAGATTGCC
1 ACAAAGGCTTCCAACTCATAGATTGCC
** * ** *
76194332 ACAAAAACTCCCATTTTATAGATTGCC
1 ACAAAGGCTTCCAACTCATAGATTGCC
* ** * *
76194359 AAAAAGGCTTCCATTTCATAAATTTCC
1 ACAAAGGCTTCCAACTCATAGATTGCC
76194386 ACAAAGG-TTCCA
1 ACAAAGGCTTCCA
76194398 TTTTTTAGAG
Statistics
Matches: 78, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
26 5 0.06
27 73 0.94
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.28
Consensus pattern (27 bp):
ACAAAGGCTTCCAACTCATAGATTGCC
Found at i:76196536 original size:17 final size:17
Alignment explanation
Indices: 76196514--76196547 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76196504 CACTAACATG
*
76196514 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
*
76196531 AAAATGCAATGGCAATA
1 AAAATGCAATGACAATA
76196548 TGTACTTATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.09, G:0.15, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:76196635 original size:37 final size:37
Alignment explanation
Indices: 76196585--76196658 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
76196575 TACATGCAAT
*
76196585 GCATGGATACTATAACGAAAGCTTAAAATAAACTAAC
1 GCATGAATACTATAACGAAAGCTTAAAATAAACTAAC
*
76196622 GCATGAATACTATAGCGAAAGCTTAAAATAAACTAAC
1 GCATGAATACTATAACGAAAGCTTAAAATAAACTAAC
76196659 TTAGTTATCC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.49, C:0.16, G:0.14, T:0.22
Consensus pattern (37 bp):
GCATGAATACTATAACGAAAGCTTAAAATAAACTAAC
Found at i:76197052 original size:18 final size:18
Alignment explanation
Indices: 76197018--76197052 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76197008 TCCTTTTTCA
**
76197018 TCTTCAACAACTTCTTCT
1 TCTTCAACAACAACTTCT
76197036 TCTTCAACAACAACTTC
1 TCTTCAACAACAACTTC
76197053 CTTTTCTGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.34, G:0.00, T:0.37
Consensus pattern (18 bp):
TCTTCAACAACAACTTCT
Found at i:76206627 original size:24 final size:26
Alignment explanation
Indices: 76206588--76206637 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
76206578 ATCATTCAAT
76206588 TACATTATGAATACAT-AATA-AACA
1 TACATTATGAATACATGAATATAACA
76206612 TACATT-TGAATAACATGAATATAACA
1 TACATTATGAAT-ACATGAATATAACA
76206638 ATCGTTCATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 5 0.22
24 10 0.43
25 4 0.17
26 4 0.17
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (26 bp):
TACATTATGAATACATGAATATAACA
Found at i:76209610 original size:22 final size:22
Alignment explanation
Indices: 76209585--76209629 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
76209575 CTATATTGGT
76209585 GATTTGGATAAAAGAGAACTAA
1 GATTTGGATAAAAGAGAACTAA
76209607 GATTTGGATAAAAGAGAACTAA
1 GATTTGGATAAAAGAGAACTAA
76209629 G
1 G
76209630 TACTGGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.04, G:0.24, T:0.22
Consensus pattern (22 bp):
GATTTGGATAAAAGAGAACTAA
Found at i:76217623 original size:221 final size:221
Alignment explanation
Indices: 76217240--76217684 Score: 872
Period size: 221 Copynumber: 2.0 Consensus size: 221
76217230 TATACAAACT
76217240 TACCTAAACTTATATATATATACATGACCATATTTCATTTATACACATCTAGTTCAATACCATCC
1 TACCTAAACTTATATATATATACATGACCATATTTCATTTATACACATCTAGTTCAATACCATCC
76217305 GAAAACATACCATATCTTGACCATTAGTACGTCAGCATAAACTTACCATTTGAGTCATACCATTC
66 GAAAACATACCATATCTTGACCATTAGTACGTCAGCATAAACTTACCATTTGAGTCATACCATTC
*
76217370 ATGCATCATAAATACCAAAATGACACAATTTAACCAATGTAAAGTGGTGCCAAACAACTTATACA
131 ATGCATCATAAATACCAAAATGACACAATTTAACCAATGTAAAGTGGTACCAAACAACTTATACA
76217435 TGCAAAAGTCATCAACTAGATACCAA
196 TGCAAAAGTCATCAACTAGATACCAA
76217461 TACCTAAACTTATATATATATACATGACCATATTTCATTTATACACATCTAGTTCAATACCATCC
1 TACCTAAACTTATATATATATACATGACCATATTTCATTTATACACATCTAGTTCAATACCATCC
76217526 GAAAACATACCATATCTTGACCATTAGTACGTCAGCATAAACTTACCATTTGAGTCATACCATTC
66 GAAAACATACCATATCTTGACCATTAGTACGTCAGCATAAACTTACCATTTGAGTCATACCATTC
*
76217591 ATGCATCATAAATACCAAAATGACACAATTTAACCAGTGTAAAGTGGTACCAAACAACTTATACA
131 ATGCATCATAAATACCAAAATGACACAATTTAACCAATGTAAAGTGGTACCAAACAACTTATACA
76217656 TGCAAAAGTCATCAACTAGATACCAA
196 TGCAAAAGTCATCAACTAGATACCAA
76217682 TAC
1 TAC
76217685 AAGTTCAGCT
Statistics
Matches: 222, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
221 222 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (221 bp):
TACCTAAACTTATATATATATACATGACCATATTTCATTTATACACATCTAGTTCAATACCATCC
GAAAACATACCATATCTTGACCATTAGTACGTCAGCATAAACTTACCATTTGAGTCATACCATTC
ATGCATCATAAATACCAAAATGACACAATTTAACCAATGTAAAGTGGTACCAAACAACTTATACA
TGCAAAAGTCATCAACTAGATACCAA
Found at i:76224189 original size:18 final size:17
Alignment explanation
Indices: 76224152--76224243 Score: 81
Period size: 16 Copynumber: 5.7 Consensus size: 17
76224142 TATGTCTTTC
**
76224152 AAAATAAGAA-AATTGA
1 AAAATAAGAATAAAAGA
76224168 AAAATCAA-AATCAAAAGA
1 AAAAT-AAGAAT-AAAAGA
76224186 AAAATAAGAATAAAAG-
1 AAAATAAGAATAAAAGA
*
76224202 -AAATAA-AATAAAATA
1 AAAATAAGAATAAAAGA
*
76224217 AAAATAAGAAT-AAATA
1 AAAATAAGAATAAAAGA
76224233 AAAATAA-AATA
1 AAAATAAGAATA
76224244 GGAGGATTCA
Statistics
Matches: 65, Mismatches: 3, Indels: 16
0.77 0.04 0.19
Matches are distributed among these distances:
14 7 0.11
15 9 0.14
16 25 0.38
17 12 0.18
18 12 0.18
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (17 bp):
AAAATAAGAATAAAAGA
Found at i:76224212 original size:5 final size:5
Alignment explanation
Indices: 76224186--76224243 Score: 57
Period size: 5 Copynumber: 11.2 Consensus size: 5
76224176 AATCAAAAGA
*
76224186 AAAAT AAGAAT AAAA- GAAAT AAAAT AAAAT AAAAAT AAGAAT -AAAT
1 AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT
76224232 AAAAAT AAAAT A
1 -AAAAT AAAAT A
76224244 GGAGGATTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
4 6 0.13
5 22 0.49
6 17 0.38
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:76224223 original size:31 final size:32
Alignment explanation
Indices: 76224152--76224243 Score: 116
Period size: 31 Copynumber: 2.8 Consensus size: 32
76224142 TATGTCTTTC
*
76224152 AAAATAAGAA-AATTGAAAAATCAAAATCAAAAGA
1 AAAATAAGAATAAAT-AAAAAT-AAAAT-AAAAGA
* *
76224186 AAAATAAGAATAAA-AGAAATAAAATAAAATA
1 AAAATAAGAATAAATAAAAATAAAATAAAAGA
76224217 AAAATAAGAATAAATAAAAATAAAATA
1 AAAATAAGAATAAATAAAAATAAAATA
76224244 GGAGGATTCA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
31 19 0.37
32 16 0.31
33 5 0.10
34 10 0.19
35 2 0.04
ACGTcount: A:0.75, C:0.02, G:0.07, T:0.16
Consensus pattern (32 bp):
AAAATAAGAATAAATAAAAATAAAATAAAAGA
Found at i:76224237 original size:6 final size:6
Alignment explanation
Indices: 76224167--76224241 Score: 57
Period size: 6 Copynumber: 12.7 Consensus size: 6
76224157 AAGAAAATTG
* * * * *
76224167 AAAAAT CAAAAT CAAAAG AAAAAT AAGAAT AAAAGAA ATAAAAT -AAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT A-AAAAT AAAAAT
*
76224216 AAAAAT AAGAAT --AAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA
76224242 TAGGAGGATT
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
4 3 0.06
5 5 0.09
6 40 0.74
7 3 0.06
8 3 0.06
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:76236212 original size:42 final size:41
Alignment explanation
Indices: 76236060--76236245 Score: 196
Period size: 42 Copynumber: 4.5 Consensus size: 41
76236050 AACAAATCGA
* * *
76236060 CTATGTTTGGCACTTAGTGTGTAAG-TCAGAATAGCTTCGG
1 CTATGTTTGGCACTTAGTGTGCAAGATTATAATAGCTTCGG
* * * * *
76236100 CTATATATGGCACTTAGTGTGCGAGACTGA-GATAGCTTCGG
1 CTATGTTTGGCACTTAGTGTGCAAGA-TTATAATAGCTTCGG
*** *
76236141 CTATGAAAGGCACTTAGTGTGCGAGATTATAATAGCTTCGG
1 CTATGTTTGGCACTTAGTGTGCAAGATTATAATAGCTTCGG
* * *
76236182 CTATGCTTTGGCACTTAGTGTGCAATATTATAATAGCTTTGA
1 CTATG-TTTGGCACTTAGTGTGCAAGATTATAATAGCTTCGG
76236224 CTATGCTTTGGCACTTAGTGTG
1 CTATG-TTTGGCACTTAGTGTG
76236246 TGAGATATCG
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 23 0.19
41 48 0.39
42 53 0.43
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (41 bp):
CTATGTTTGGCACTTAGTGTGCAAGATTATAATAGCTTCGG
Found at i:76236228 original size:83 final size:83
Alignment explanation
Indices: 76236089--76236251 Score: 186
Period size: 83 Copynumber: 2.0 Consensus size: 83
76236079 TGTAAGTCAG
* * *
76236089 AATAGCTTCGGCTATATATGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGCTATG-AAAGGCA
1 AATAGCTTCGGCTATATATGGCACTTAGTGTGCAAGACTGAAATAGCTTCGACTATGCAAAGGCA
76236153 CTTAGTGTGCGAGATTAT
66 CTTAGTGTGCGAGATTAT
* * * * * ***
76236171 AATAGCTTCGGCTATGCTTTGGCACTTAGTGTGCAATA-TTATAATAGCTTTGACTATGCTTTGG
1 AATAGCTTCGGCTAT-ATATGGCACTTAGTGTGCAAGACTGA-AATAGCTTCGACTATGCAAAGG
*
76236235 CACTTAGTGTGTGAGAT
64 CACTTAGTGTGCGAGAT
76236252 ATCGAGTATT
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
82 17 0.26
83 31 0.47
84 18 0.27
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (83 bp):
AATAGCTTCGGCTATATATGGCACTTAGTGTGCAAGACTGAAATAGCTTCGACTATGCAAAGGCA
CTTAGTGTGCGAGATTAT
Found at i:76248011 original size:44 final size:44
Alignment explanation
Indices: 76247921--76248078 Score: 123
Period size: 44 Copynumber: 3.7 Consensus size: 44
76247911 ATGTGATTTC
* * *
76247921 GTGTAAGACCACATCTAGGACGTTGGCATCA-GTTTGAGATTTAT
1 GTGTAAGACCACATCTAGGACATTGGCATCATATTTGA-ATTCAT
** * *
76247965 GTGTAAGACCATGTCTGGGACATTGACATCATATTTGAATTCAT
1 GTGTAAGACCACATCTAGGACATTGGCATCATATTTGAATTCAT
* *
76248009 GTG--AGACC-CTATCTAGGACAGTGGCATAGATATTTG-ATTACA-
1 GTGTAAGACCAC-ATCTAGGACATTGGCAT-CATATTTGAATT-CAT
* * *
76248051 -TGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACATCTAGGACATTGGCAT
76248079 TTTACGAGCT
Statistics
Matches: 90, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
41 2 0.02
42 21 0.23
43 27 0.30
44 35 0.39
45 5 0.06
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (44 bp):
GTGTAAGACCACATCTAGGACATTGGCATCATATTTGAATTCAT
Found at i:76248028 original size:42 final size:42
Alignment explanation
Indices: 76247926--76248078 Score: 112
Period size: 43 Copynumber: 3.6 Consensus size: 42
76247916 ATTTCGTGTA
* * * *
76247926 AGACCACATCTAGGACGTTGGCATCA-GTTTGAGATTTATGTG
1 AGACCATATCTAGGACATTGGCATCATATTTGA-ATTCATGTG
* * *
76247968 TAAGACCATGTCTGGGACATTGACATCATATTTGAATTCATGTG
1 --AGACCATATCTAGGACATTGGCATCATATTTGAATTCATGTG
* * * *
76248012 AGACCCTATCTAGGACAGTGGCATAGATATTTG-ATTACATGTA
1 AGACCATATCTAGGACATTGGCAT-CATATTTGAATT-CATGTG
** * *
76248055 AGACCACGTCTGGGACGTTGGCAT
1 AGACCATATCTAGGACATTGGCAT
76248079 TTTACGAGCT
Statistics
Matches: 86, Mismatches: 20, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 22 0.26
43 30 0.35
44 29 0.34
45 5 0.06
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (42 bp):
AGACCATATCTAGGACATTGGCATCATATTTGAATTCATGTG
Found at i:76248077 original size:43 final size:43
Alignment explanation
Indices: 76247908--76248078 Score: 111
Period size: 43 Copynumber: 4.0 Consensus size: 43
76247898 TAGGATTTCT
* * *
76247908 GATATGTGATTTCGTGTAAGACCACATCTAGGACGTTGGCATCA
1 GATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCAT-A
* ** ** * * *
76247952 G-T-TTGAGATTTATGTGTAAGACCATGTCTGGGACATTGACAT-
1 GATATT-TGA-TTACATGTAAGACCACATCTAGGACGTTGGCATA
* *
76247994 CATATTTGAATT-CATGTGAGACC-CTATCTAGGACAG-TGGCATA
1 GATATTTG-ATTACATGTAAGACCAC-ATCTAGGAC-GTTGGCATA
* *
76248037 GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 GATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCAT
76248079 TTTACGAGCT
Statistics
Matches: 93, Mismatches: 23, Indels: 23
0.67 0.17 0.17
Matches are distributed among these distances:
42 25 0.27
43 37 0.40
44 31 0.33
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCACATCTAGGACGTTGGCATA
Found at i:76253949 original size:40 final size:40
Alignment explanation
Indices: 76253905--76254035 Score: 192
Period size: 40 Copynumber: 3.3 Consensus size: 40
76253895 AGACTAAGAT
*
76253905 CCGAAGGTATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
76253945 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* *
76253985 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
76254025 CCGAAGGCATT
1 CCGAAGGCATT
76254036 GAATGAGTTA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 80 0.99
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
Found at i:76254056 original size:39 final size:38
Alignment explanation
Indices: 76253933--76254082 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
76253923 GTTATTAATT
* ** * *
76253933 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
76253973 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
76254012 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
76254052 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
76254083 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:76263903 original size:22 final size:20
Alignment explanation
Indices: 76263865--76263904 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
76263855 TTGCGAGATA
*
76263865 AGCAATTGTATGTGAAGTTT
1 AGCAATTGTATGAGAAGTTT
76263885 AGCAATTGGTTATGAGAAGT
1 AGCAATT-G-TATGAGAAGT
76263905 CAATTTTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 1 0.06
22 9 0.53
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.35
Consensus pattern (20 bp):
AGCAATTGTATGAGAAGTTT
Found at i:76289542 original size:30 final size:30
Alignment explanation
Indices: 76289485--76289544 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
76289475 TCCCGAACCC
* *
76289485 AGGGGCAAAAGTGTAATTATGCAAAAGTTT
1 AGGGGCAAAAATGTAATTATACAAAAGTTT
* *
76289515 AGGGGCAAAAATGTAATTTTACCAAAGTTT
1 AGGGGCAAAAATGTAATTATACAAAAGTTT
76289545 GTATTAAAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.28
Consensus pattern (30 bp):
AGGGGCAAAAATGTAATTATACAAAAGTTT
Found at i:76291804 original size:35 final size:35
Alignment explanation
Indices: 76291757--76291828 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
76291747 AGAGAGGGAG
*
76291757 TAAGCATAAAGCTTAGTAAGCTTGCATGTAATTAA
1 TAAGCATAAAGCTTAGTAAGCTTGCATGCAATTAA
76291792 TAAGCA-ATAAGCTTAGTAAGCTTGCATGCAATTAA
1 TAAGCATA-AAGCTTAGTAAGCTTGCATGCAATTAA
76291827 TA
1 TA
76291829 CACATACACA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (35 bp):
TAAGCATAAAGCTTAGTAAGCTTGCATGCAATTAA
Found at i:76292201 original size:42 final size:42
Alignment explanation
Indices: 76292146--76292265 Score: 123
Period size: 42 Copynumber: 2.9 Consensus size: 42
76292136 TACATGGGAC
* * **
76292146 CTCACATCAATGCCATATCCCAGATATGGTCTTATAGGAAAT
1 CTCATATCAATGCCATATCCCAGATATGGTCTTACACAAAAT
* ** * * ** *
76292188 CTCATTTTGATGCCATGTCCCAAACGTGGTATTACACAAAAT
1 CTCATATCAATGCCATATCCCAGATATGGTCTTACACAAAAT
*
76292230 CTCATATCAATTCCATATCCCAGATATGGTCTTACA
1 CTCATATCAATGCCATATCCCAGATATGGTCTTACA
76292266 TGATAACACA
Statistics
Matches: 57, Mismatches: 21, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (42 bp):
CTCATATCAATGCCATATCCCAGATATGGTCTTACACAAAAT
Found at i:76297379 original size:28 final size:28
Alignment explanation
Indices: 76297316--76297438 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
76297306 ATATTAAGTC
*
76297316 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
76297343 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
76297371 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
76297399 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
76297428 CGCACACTTAG
1 CGCACACTTAG
76297439 CGCCAATCTC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 22 0.25
28 49 0.56
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76331000 original size:27 final size:27
Alignment explanation
Indices: 76330970--76331113 Score: 99
Period size: 27 Copynumber: 5.3 Consensus size: 27
76330960 GCAAATTAGT
* *
76330970 CATTTTACCTCACAGGGGTATTATAGA
1 CATTTTACCTTACAGGGGTATTACAGA
* * *
76330997 CATTTTACCTTTCAGGGATATTACAGT
1 CATTTTACCTTACAGGGGTATTACAGA
* * **
76331024 CATTTTACCTTATAGGGGTATTCCATT
1 CATTTTACCTTACAGGGGTATTACAGA
* ** * * *
76331051 CATTTTACCCTATGGGGGTATTTCGGT
1 CATTTTACCTTACAGGGGTATTACAGA
* ** ** *
76331078 CATTTTACCCTATGGGGGTATTTTAGT
1 CATTTTACCTTACAGGGGTATTACAGA
76331105 CATTTTACC
1 CATTTTACC
76331114 CTATGGGGGT
Statistics
Matches: 100, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.41
Consensus pattern (27 bp):
CATTTTACCTTACAGGGGTATTACAGA
Found at i:76331055 original size:54 final size:53
Alignment explanation
Indices: 76330967--76331153 Score: 158
Period size: 54 Copynumber: 3.5 Consensus size: 53
76330957 AGGGCAAATT
* * * *
76330967 AGTCATTTTACCTCACAGGGGTATTATAGACATTTTACCTTTCAGGGATATTAC
1 AGTCATTTTACCTTATAGGGGTATTATAGTCATTTTACCTAT-AGGGATATTAC
** * * * *
76331021 AGTCATTTTACCTTATAGGGGTATTCCATTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCTTATAGGGGTATTATAGTCATTTTA-CCTATAGGGATATTAC
* * * * * * *
76331075 GGTCATTTTACCCTATGGGGGTATTTTAGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCTTATAGGGGTATTATAGTCATTTTA-CCTATAGGGATATTAC
* * * *
76331129 GGTTATTTTACCCTATGGGGGTATT
1 AGTCATTTTACCTTATAGGGGTATT
76331154 TTGGTTACCA
Statistics
Matches: 115, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
54 111 0.97
55 4 0.03
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (53 bp):
AGTCATTTTACCTTATAGGGGTATTATAGTCATTTTACCTATAGGGATATTAC
Found at i:76331114 original size:27 final size:27
Alignment explanation
Indices: 76331015--76331154 Score: 199
Period size: 27 Copynumber: 5.2 Consensus size: 27
76331005 CTTTCAGGGA
* * *
76331015 TATTACAGTCATTTTACCTTATAGGGG
1 TATTTCAGTCATTTTACCCTATGGGGG
* *
76331042 TATTCCATTCATTTTACCCTATGGGGG
1 TATTTCAGTCATTTTACCCTATGGGGG
*
76331069 TATTTCGGTCATTTTACCCTATGGGGG
1 TATTTCAGTCATTTTACCCTATGGGGG
*
76331096 TATTTTAGTCATTTTACCCTATGGGGG
1 TATTTCAGTCATTTTACCCTATGGGGG
* *
76331123 TATTTCGGTTATTTTACCCTATGGGGG
1 TATTTCAGTCATTTTACCCTATGGGGG
76331150 TATTT
1 TATTT
76331155 TGGTTACCAT
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (27 bp):
TATTTCAGTCATTTTACCCTATGGGGG
Found at i:76337622 original size:11 final size:11
Alignment explanation
Indices: 76337606--76337630 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
76337596 TTATATATAC
76337606 TAATAAAATAA
1 TAATAAAATAA
76337617 TAATAAAATAA
1 TAATAAAATAA
76337628 TAA
1 TAA
76337631 AATATCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:76340228 original size:27 final size:26
Alignment explanation
Indices: 76340198--76340328 Score: 138
Period size: 27 Copynumber: 4.8 Consensus size: 26
76340188 TAATACCGTT
* *
76340198 ATTTTACCATATAGGGGTATTTTAGTG
1 ATTTTACCCTAT-GGGGTATTTTAGTC
* *
76340225 ATTTTACTCTATGTGGGTA-TTTCGATC
1 ATTTTACCCTATG-GGGTATTTTAG-TC
*
76340252 ATTTTACCCTATGGGTGTATTTTTGTC
1 ATTTTACCCTATGGG-GTATTTTAGTC
* *
76340279 ATTTTACCCTATGGGGGTATTTCAGTT
1 ATTTTACCCTAT-GGGGTATTTTAGTC
76340306 ATTTTACCCTATGGGGGTATTTT
1 ATTTTACCCTAT-GGGGTATTTT
76340329 GATCTCCATT
Statistics
Matches: 89, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
26 7 0.08
27 75 0.84
28 7 0.08
ACGTcount: A:0.19, C:0.13, G:0.21, T:0.47
Consensus pattern (26 bp):
ATTTTACCCTATGGGGTATTTTAGTC
Found at i:76340243 original size:54 final size:53
Alignment explanation
Indices: 76340170--76340328 Score: 158
Period size: 54 Copynumber: 2.9 Consensus size: 53
76340160 ATGTTACAGA
* ** * *
76340170 CATTTTACCATACAGGGGTAATACCGTTATTTTACCATATAGGGGTATTTTAGT
1 CATTTTACCCTATGGGGGTAATTCCGTTATTTTACCCTAT-GGGGTATTTTAGT
* * * * * *
76340224 GATTTTACTCTATGTGGGT-ATTTCGATCATTTTACCCTATGGGTGTATTTTTGT
1 CATTTTACCCTATGGGGGTAATTCCG-TTATTTTACCCTATGGG-GTATTTTAGT
* *
76340278 CATTTTACCCTATGGGGGTATTTCAGTTATTTTACCCTATGGGGGTATTTT
1 CATTTTACCCTATGGGGGTAATTCCGTTATTTTACCCTAT-GGGGTATTTT
76340329 GATCTCCATT
Statistics
Matches: 83, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
53 7 0.08
54 70 0.84
55 6 0.07
ACGTcount: A:0.21, C:0.14, G:0.20, T:0.45
Consensus pattern (53 bp):
CATTTTACCCTATGGGGGTAATTCCGTTATTTTACCCTATGGGGTATTTTAGT
Found at i:76363474 original size:29 final size:27
Alignment explanation
Indices: 76363456--76363525 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
76363446 ATATTAAGTC
76363456 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
76363483 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
76363511 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
76363526 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:76363519 original size:28 final size:28
Alignment explanation
Indices: 76363456--76363552 Score: 133
Period size: 28 Copynumber: 3.5 Consensus size: 28
76363446 ATATTAAGTC
*
76363456 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
76363483 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
76363511 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
76363540 CGCACACTTAGTG
1 CGCACACTTAGTG
76363553 TCAATCTCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.35
28 23 0.37
29 18 0.29
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76365487 original size:18 final size:18
Alignment explanation
Indices: 76365464--76365500 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
76365454 GATGGATCAA
76365464 AATGGGCTGTGTGGG-TCC
1 AATGGGCT-TGTGGGCTCC
76365482 AATGGGCTTGTGGGCTCC
1 AATGGGCTTGTGGGCTCC
76365500 A
1 A
76365501 CACGGATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.14, C:0.19, G:0.41, T:0.27
Consensus pattern (18 bp):
AATGGGCTTGTGGGCTCC
Found at i:76365958 original size:26 final size:26
Alignment explanation
Indices: 76365929--76365979 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
76365919 CATATATTGA
*
76365929 TACTAGCAGCTTTGCTGCGATATTAT
1 TACTAGCAACTTTGCTGCGATATTAT
*
76365955 TACTTGCAACTTTGCTGCGATATTA
1 TACTAGCAACTTTGCTGCGATATTA
76365980 GTGTGTTGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.39
Consensus pattern (26 bp):
TACTAGCAACTTTGCTGCGATATTAT
Done.