Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 225 of 345
Found at i:76368124 original size:24 final size:24
Alignment explanation
Indices: 76368092--76368137 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
76368082 GGTGTTTTGT
*
76368092 GGAGAAAATCAAGGAGAGGATTGG
1 GGAGAAAATCAAGAAGAGGATTGG
*
76368116 GGAGAAAATCAATAAGAGGATT
1 GGAGAAAATCAAGAAGAGGATT
76368138 ATGGAGAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.04, G:0.35, T:0.15
Consensus pattern (24 bp):
GGAGAAAATCAAGAAGAGGATTGG
Found at i:76368143 original size:24 final size:24
Alignment explanation
Indices: 76368091--76368144 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
76368081 GGGTGTTTTG
* *
76368091 TGGAGAAAATCAAGGAGAGGATTG
1 TGGAGAAAATCAAGAAGAGGATTA
* *
76368115 GGGAGAAAATCAATAAGAGGATTA
1 TGGAGAAAATCAAGAAGAGGATTA
76368139 TGGAGA
1 TGGAGA
76368145 GATTTTAGGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.35, T:0.17
Consensus pattern (24 bp):
TGGAGAAAATCAAGAAGAGGATTA
Found at i:76392455 original size:49 final size:49
Alignment explanation
Indices: 76392392--76392566 Score: 217
Period size: 49 Copynumber: 3.5 Consensus size: 49
76392382 CTGGTATGCA
*
76392392 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
* * * * * * * *
76392441 TAGTAGCCTACACTTAGTACTACACACGTGATC-ATAGTTTTCGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATA-ATCT-G-GTACACG
* *
76392492 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
76392541 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
76392567 CGTGACCTCA
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
48 3 0.03
49 61 0.59
50 2 0.02
51 35 0.34
52 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
Found at i:76392507 original size:100 final size:100
Alignment explanation
Indices: 76392389--76392571 Score: 330
Period size: 100 Copynumber: 1.8 Consensus size: 100
76392379 TATCTGGTAT
* *
76392389 GCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCCTACAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCTACAC
76392454 TTAGTACTACACACGTGATCATAGTTTTCGAGTAC
66 TTAGTACTACACACGTGATCATAGTTTTCGAGTAC
* *
76392489 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCAC
1 GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCTACAC
76392554 TTAGTACTACACACGTGA
66 TTAGTACTACACACGTGA
76392572 CCTCACAATA
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (100 bp):
GCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCTACAC
TTAGTACTACACACGTGATCATAGTTTTCGAGTAC
Found at i:76396964 original size:40 final size:41
Alignment explanation
Indices: 76396881--76397026 Score: 169
Period size: 40 Copynumber: 3.6 Consensus size: 41
76396871 TCGAATGATG
* *
76396881 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAA
*
76396921 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATAA
* *
76396961 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
*
76397002 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
76397027 AATGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
39 1 0.01
40 78 0.85
41 12 0.13
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAA
Found at i:76397044 original size:80 final size:80
Alignment explanation
Indices: 76396881--76397059 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
76396871 TCGAATGATG
* *
76396881 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
76396946 GTGCGAGATACTAAA
66 GAACGAGATACTAAA
* * * * *
76396961 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
* *
76397024 TTGAATGAG-TAGCTATA
64 TTGAACGAGATA-CTAAA
* *
76397041 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
76397060 TATGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
79 17 0.20
80 59 0.71
81 7 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAA
Found at i:76397365 original size:49 final size:47
Alignment explanation
Indices: 76397251--76398092 Score: 1414
Period size: 47 Copynumber: 17.6 Consensus size: 47
76397241 AAGGGTTGGT
76397251 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
76397300 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76397347 AATGTGAAAGTGTATATATGTGTTAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76397394 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76397443 AATGTGAAAGTGTATACATATGTGATAAGGCCTAATGGCCGATTTGATG
1 AATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGTGATG
76397492 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
76397541 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76397588 AATGTGAAATTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76397637 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
76397686 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76397733 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76397780 AATGTGAAAGTGTATATCTGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76397827 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
76397876 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
76397925 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATTTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
76397972 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
76398019 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
76398066 GATATGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
76398093 TCCCGAAGGG
Statistics
Matches: 759, Mismatches: 22, Indels: 26
0.94 0.03 0.03
Matches are distributed among these distances:
47 426 0.56
49 330 0.43
51 3 0.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:76397557 original size:145 final size:142
Alignment explanation
Indices: 76397251--76398092 Score: 1420
Period size: 145 Copynumber: 5.9 Consensus size: 142
76397241 AAGGGTTGGT
76397251 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
76397316 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTTAAGGCCTAAT
65 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
76397381 GGCCGATGTGATG
130 GGCCGATGTGATG
76397394 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT-
*
76397459 CATATGTGATAAGGCCTAATGGCCGATTTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
64 -ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
76397524 TAATGGCCGATGTGATG
126 TAATGGCCGATGTGATG
*
76397541 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAATTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTGTAT
76397605 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
76397670 AATGGCCGATGTGATG
127 AATGGCCGATGTGATG
76397686 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
76397750 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATCTGTGATAAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
76397815 GCCGATGTGATG
131 GCCGATGTGATG
*
76397827 AATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
76397892 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
63 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
*
76397957 ATGGCCGATTTGATG
128 ATGGCCGATGTGATG
76397972 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * * * *
76398036 ATGTGACAGGGCCGAGTGGCCAATGTGATGGATATGAAAGTGTATAAATGTGATAAG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
76398093 TCCCGAAGGG
Statistics
Matches: 671, Mismatches: 18, Indels: 22
0.94 0.03 0.03
Matches are distributed among these distances:
141 100 0.15
143 205 0.31
145 315 0.47
147 51 0.08
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (142 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATG
Found at i:76398267 original size:37 final size:37
Alignment explanation
Indices: 76398211--76398289 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76398201 CCGAGCTCTA
* * *
76398211 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
76398248 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76398285 AAGAC
1 AAGAC
76398290 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76400681 original size:38 final size:38
Alignment explanation
Indices: 76400632--76400870 Score: 361
Period size: 38 Copynumber: 6.2 Consensus size: 38
76400622 GGCTTAAAGA
76400632 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* * * *
76400670 CCCACATGCTTCGTGCTGGTAATATATCCAGGCTTAAAGA
1 CCCGCAGGCTTCGTGCTGGTAATATATCC-GGGTTAAA-T
* *
76400710 CCCGCAGGCTTTGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
*
76400748 CCCGAAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
76400786 CCCGTAGGCTTCGTGCTGGTAATATATCTGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
76400824 CCCGCAGGCTTCGTGCTGGTATTATATCCGAGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
76400862 CCCGCAGGC
1 CCCGCAGGC
76400871 CTAATACTGG
Statistics
Matches: 180, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
38 141 0.78
39 14 0.08
40 25 0.14
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
Found at i:76407283 original size:31 final size:31
Alignment explanation
Indices: 76407248--76407313 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
76407238 CAATTTAGTC
76407248 CTTACCCAAGCCTAACCAAACATTTTTCTAT
1 CTTACCCAAGCCTAACCAAACATTTTTCTAT
* *
76407279 CTTACCCAAGCCTAACCGAACATTTTTCTCT
1 CTTACCCAAGCCTAACCAAACATTTTTCTAT
76407310 CTTA
1 CTTA
76407314 TGGCAACCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.29, C:0.33, G:0.05, T:0.33
Consensus pattern (31 bp):
CTTACCCAAGCCTAACCAAACATTTTTCTAT
Found at i:76407439 original size:18 final size:18
Alignment explanation
Indices: 76407416--76407451 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76407406 CTTGGAAAAG
76407416 ATGTTTATCACACATTTA
1 ATGTTTATCACACATTTA
76407434 ATGTTTATCACACATTTA
1 ATGTTTATCACACATTTA
76407452 TCTTTCATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.44
Consensus pattern (18 bp):
ATGTTTATCACACATTTA
Found at i:76409105 original size:34 final size:35
Alignment explanation
Indices: 76409061--76409127 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
76409051 CAGTAAAATA
* *
76409061 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAACGATTTACTGGAAAATATTTTAC
*
76409095 TTTTCTGTAAAACGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAACGATTTACTGGAAAATATTTT
76409128 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAACGATTTACTGGAAAATATTTTAC
Found at i:76409113 original size:20 final size:20
Alignment explanation
Indices: 76409076--76409115 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
76409066 CGTAAAATGA
* *
76409076 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAACGATTTACT
*
76409096 TTTCTGTAAAACGATTTACT
1 TTTCTGGAAAACGATTTACT
76409116 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.47
Consensus pattern (20 bp):
TTTCTGGAAAACGATTTACT
Found at i:76418432 original size:15 final size:14
Alignment explanation
Indices: 76418412--76418461 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
76418402 TCGTCTATTA
76418412 GATTTCTGTATCTTG
1 GATTTCT-TATCTTG
76418427 GATTTCTTCATCTTG
1 GATTTCTT-ATCTTG
* *
76418442 GATTTTTTTGTCTTG
1 GA-TTTCTTATCTTG
76418457 GATTT
1 GATTT
76418462 TTTTATTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 4 0.13
15 22 0.71
16 5 0.16
ACGTcount: A:0.12, C:0.12, G:0.18, T:0.58
Consensus pattern (14 bp):
GATTTCTTATCTTG
Found at i:76418462 original size:15 final size:15
Alignment explanation
Indices: 76418420--76418472 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
76418410 TAGATTTCTG
*
76418420 TATCTTGGATTTCTT
1 TATCTTGGATTTTTT
*
76418435 CATCTTGGATTTTTT
1 TATCTTGGATTTTTT
*
76418450 TGTCTTGGATTTTTT
1 TATCTTGGATTTTTT
*
76418465 TATTTTGG
1 TATCTTGG
76418473 TCTTCTTGTC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.11, C:0.09, G:0.17, T:0.62
Consensus pattern (15 bp):
TATCTTGGATTTTTT
Found at i:76421608 original size:42 final size:43
Alignment explanation
Indices: 76421495--76421608 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
76421485 GGAATTAAGA
*
76421495 AATCTGAGCTCGTTGAGAGGTCCAAGTTCGTGATATATGTGAG
1 AATCTGAGCTCGTTGAGTGGTCCAAGTTCGTGATATATGTGAG
** * *
76421538 AATCCAAACTTGTTGAGTGGTCCAAGTTCGTGATATATGT-AG
1 AATCTGAGCTCGTTGAGTGGTCCAAGTTCGTGATATATGTGAG
* *
76421580 CATCTGAGCTCGTTGAGTGGTCCGAGTTC
1 AATCTGAGCTCGTTGAGTGGTCCAAGTTC
76421609 ATAATGGGTG
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
42 25 0.42
43 35 0.58
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
AATCTGAGCTCGTTGAGTGGTCCAAGTTCGTGATATATGTGAG
Found at i:76421653 original size:51 final size:51
Alignment explanation
Indices: 76421569--76421666 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
76421559 CCAAGTTCGT
* * * *
76421569 GATATATGTAGCATCTGAGCTCGTTGAGTGGTCCGAGTTCATAATGGGTGC
1 GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGGTGC
*
76421620 GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGG
1 GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGG
76421667 ATATGTTACA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (51 bp):
GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGGTGC
Found at i:76421677 original size:51 final size:51
Alignment explanation
Indices: 76421569--76421679 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 51
76421559 CCAAGTTCGT
* * * * * *
76421569 GATATATGTAGCATCTGAGCTCGTTGAGTGGTCCGAGTTCATAATGGGTGC
1 GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATAC
* *
76421620 GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATAT
1 GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATAC
*
76421671 GTTACATGT
1 GATACATGT
76421680 TATAAGGTAG
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (51 bp):
GATACATGTAACATCCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATAC
Found at i:76424140 original size:17 final size:18
Alignment explanation
Indices: 76424118--76424152 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
76424108 TTACATTGAA
76424118 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
76424135 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
76424153 CTTCTTAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:76425414 original size:19 final size:19
Alignment explanation
Indices: 76425378--76425414 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
76425368 CAACCCATCA
*
76425378 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
76425397 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
76425415 TCAACCCAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:76428625 original size:26 final size:26
Alignment explanation
Indices: 76428595--76428667 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
76428585 CTCTTTTAAT
* *
76428595 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
76428621 AACTGGGGCATAAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
76428647 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
76428668 GCACTTCCTC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:76428742 original size:20 final size:20
Alignment explanation
Indices: 76428717--76428783 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
76428707 TTATGAATAC
76428717 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
76428737 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
76428757 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
76428777 ATCATGT
1 ATCATGT
76428784 ATATCAAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
20 44 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:76428748 original size:11 final size:11
Alignment explanation
Indices: 76428717--76428772 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
76428707 TTATGAATAC
76428717 ATCATGTGCAT
1 ATCATGTGCAT
*
76428728 ATCA--TACAT
1 ATCATGTGCAT
76428737 ATCATGTGCAT
1 ATCATGTGCAT
*
76428748 ATCA--TACAT
1 ATCATGTGCAT
76428757 ATCATGTGCAT
1 ATCATGTGCAT
76428768 ATCAT
1 ATCAT
76428773 ATCAATCATG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:76428789 original size:9 final size:10
Alignment explanation
Indices: 76428717--76428789 Score: 64
Period size: 9 Copynumber: 7.4 Consensus size: 10
76428707 TTATGAATAC
76428717 ATCATGTGCAT
1 ATCATGT-CAT
*
76428728 ATCAT-ACAT
1 ATCATGTCAT
76428737 ATCATGTGCAT
1 ATCATGT-CAT
*
76428748 ATCAT-ACAT
1 ATCATGTCAT
76428757 ATCATGTGCAT
1 ATCATGT-CAT
*
76428768 ATCATATCA-
1 ATCATGTCAT
76428777 ATCATGT-AT
1 ATCATGTCAT
76428786 ATCA
1 ATCA
76428790 AAACCCCATG
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 1 0.02
9 26 0.51
10 2 0.04
11 22 0.43
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.36
Consensus pattern (10 bp):
ATCATGTCAT
Found at i:76430078 original size:17 final size:18
Alignment explanation
Indices: 76430050--76430085 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
76430040 AGTACCCAAG
76430050 TGCCGAAAATCCCCCCTC
1 TGCCGAAAATCCCCCCTC
*
76430068 TGCCG-AAATCCCCTCTC
1 TGCCGAAAATCCCCCCTC
76430085 T
1 T
76430086 AATCCCCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.19, C:0.47, G:0.11, T:0.22
Consensus pattern (18 bp):
TGCCGAAAATCCCCCCTC
Found at i:76430886 original size:31 final size:31
Alignment explanation
Indices: 76430851--76430914 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
76430841 CCTTTTCATA
* *
76430851 TTTCATATTTCGTAACACTGGACCGAAGCCT
1 TTTCATACTTCATAACACTGGACCGAAGCCT
** *
76430882 TTTCATACTTCATATTACTGGGCCGAAGCCT
1 TTTCATACTTCATAACACTGGACCGAAGCCT
76430913 TT
1 TT
76430915 ACTGTAAACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATACTTCATAACACTGGACCGAAGCCT
Found at i:76431256 original size:20 final size:20
Alignment explanation
Indices: 76431231--76431317 Score: 140
Period size: 20 Copynumber: 4.3 Consensus size: 20
76431221 TTATGAATAC
*
76431231 ATCATGTGCATAACATACAT
1 ATCATGTGCATATCATACAT
*
76431251 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
76431271 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
76431291 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
76431311 ATCATGT
1 ATCATGT
76431318 ATATCAAAAC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
20 61 0.97
21 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:76431264 original size:11 final size:11
Alignment explanation
Indices: 76431231--76431306 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
76431221 TTATGAATAC
76431231 ATCATGTGCAT
1 ATCATGTGCAT
* *
76431242 AACA--TACAT
1 ATCATGTGCAT
76431251 ATCATGTGCAT
1 ATCATGTGCAT
*
76431262 ATC--GTACAT
1 ATCATGTGCAT
76431271 ATCATGTGCAT
1 ATCATGTGCAT
*
76431282 ATCA--TACAT
1 ATCATGTGCAT
76431291 ATCATGTGCAT
1 ATCATGTGCAT
76431302 ATCAT
1 ATCAT
76431307 ATCAATCATG
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:76431323 original size:9 final size:10
Alignment explanation
Indices: 76431248--76431323 Score: 63
Period size: 9 Copynumber: 7.7 Consensus size: 10
76431238 GCATAACATA
76431248 CATATCATGT
1 CATATCATGT
76431258 GCATATC--GT
1 -CATATCATGT
76431267 ACATATCATGT
1 -CATATCATGT
*
76431278 GCATATCAT-A
1 -CATATCATGT
76431288 CATATCATGT
1 CATATCATGT
*
76431298 GCATATCATAT
1 -CATATCATGT
76431309 CA-ATCATGT
1 CATATCATGT
76431318 -ATATCA
1 CATATCA
76431324 AAACCCCTTG
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
8 1 0.02
9 26 0.48
10 2 0.04
11 25 0.46
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
CATATCATGT
Found at i:76433621 original size:38 final size:39
Alignment explanation
Indices: 76433574--76433682 Score: 98
Period size: 38 Copynumber: 2.8 Consensus size: 39
76433564 TGAATAGTTT
* *
76433574 GAAGCAAAGTTGACACCCAGTGTCTCATCG-GCCTAGCC
1 GAAGTAAAGTTGACACCCAGTGTCTCATCGAACCTAGCC
* * ** * *
76433612 GAAGTAAAGTGGA-TCCCAGTACCTCATCGAATCTATCC
1 GAAGTAAAGTTGACACCCAGTGTCTCATCGAACCTAGCC
76433650 GAAGTACAA-TAGTGACACCCAGTGTCTCATCGA
1 GAAGTA-AAGT--TGACACCCAGTGTCTCATCGA
76433683 CTCGAGGTCG
Statistics
Matches: 54, Mismatches: 12, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
37 13 0.24
38 23 0.43
39 2 0.04
40 2 0.04
41 14 0.26
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (39 bp):
GAAGTAAAGTTGACACCCAGTGTCTCATCGAACCTAGCC
Found at i:76439666 original size:21 final size:20
Alignment explanation
Indices: 76439632--76439670 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
76439622 ATGTGTATTT
76439632 TGAATTTTCTTGATAGATTA
1 TGAATTTTCTTGATAGATTA
*
76439652 TGAATGTTTGTTGATAGAT
1 TGAAT-TTTCTTGATAGAT
76439671 ATACAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.28, C:0.03, G:0.21, T:0.49
Consensus pattern (20 bp):
TGAATTTTCTTGATAGATTA
Found at i:76441855 original size:178 final size:179
Alignment explanation
Indices: 76441548--76441897 Score: 497
Period size: 178 Copynumber: 2.0 Consensus size: 179
76441538 ACGGAACTCT
* * * *
76441548 AAATTAAGATCTGTTAATTTTCCTAGAAACTAGACTCGCATACATTCTTACCATAAAATTTTCAA
1 AAATTAAGAACCGTTAATTTTCCCAGAAACTAGACTCACATA-ATTCTTACCATAAAATTTTCAA
* ** *
76441613 AATTTTTGGCTTAGCCAATTAGTACAGTTTATTCATTAAATTTACCCCTATTTCACTGTCCAACA
65 AATTTTTGGCTTAGCCAATTAGTACAGTTTACTCATTAAAAATACCCCTATTTCACTATCCAACA
76441678 GTTTCGACCTCTCTTCACTAAAAAATATTTATCTCATGGTACGAGACTTC
130 GTTTCGACCTCTCTTCACTAAAAAATATTTATCTCATGGTACGAGACTTC
76441728 AAATTAAGAACCGTTAATTTTCCCAGAAACTAGACTCACAT-ATTCTTACCATAAAATTTT-AAG
1 AAATTAAGAACCGTTAATTTTCCCAGAAACTAGACTCACATAATTCTTACCATAAAATTTTCAA-
* * ** * *
76441791 AATTTTTTGTTTTTCCAATTAGTACAGTTTACTCATTAAAAATACCCTTGTTTCACTATCCAACA
65 AATTTTTGGCTTAGCCAATTAGTACAGTTTACTCATTAAAAATACCCCTATTTCACTATCCAACA
* * * * *
76441856 GTTTTGATCTTTCTTTACTAAAAATTATTTATCTCATGGTAC
130 GTTTCGACCTCTCTTCACTAAAAAATATTTATCTCATGGTAC
76441898 AGATCTCGGA
Statistics
Matches: 150, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
177 2 0.01
178 111 0.74
180 37 0.25
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.39
Consensus pattern (179 bp):
AAATTAAGAACCGTTAATTTTCCCAGAAACTAGACTCACATAATTCTTACCATAAAATTTTCAAA
ATTTTTGGCTTAGCCAATTAGTACAGTTTACTCATTAAAAATACCCCTATTTCACTATCCAACAG
TTTCGACCTCTCTTCACTAAAAAATATTTATCTCATGGTACGAGACTTC
Found at i:76442541 original size:50 final size:50
Alignment explanation
Indices: 76442466--76442849 Score: 396
Period size: 50 Copynumber: 7.6 Consensus size: 50
76442456 CTAGTACTCA
* *
76442466 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACT
* * * *
76442516 TAGTAGCCTGCACTTAGTACTACACACGTAACTTATCCATCTGATACA-T
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACT
* ** * * *
76442565 GTAGTAGCCTGCACTCAGTACTACACACGTGATCGAAGTTAAT-AGGTACACA
1 -TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTA-TCAATCTGGTACACT
*** *
76442617 TAGTAGCCTGCACTTAGTACTACACATACGACCTATCAAT-TCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCT-GGTACACT
* * **
76442667 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACT
* * ** * ** * * *
76442717 TAGTAGCTTGTACTTAGTACTACACACGTGATCGAAACTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCTATCAATCTGGTACACT
* * * *
76442768 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACT
76442818 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
76442850 TTAAAACTGT
Statistics
Matches: 271, Mismatches: 56, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
49 5 0.02
50 191 0.70
51 72 0.27
52 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTATCAATCTGGTACACT
Found at i:76442643 original size:26 final size:26
Alignment explanation
Indices: 76442611--76442692 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
76442601 AGTTAATAGG
76442611 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * * *
76442637 TACACATACG-A-CCTATCAATTCG--G
1 TACACATA-GTAGCCT-GCACTTAGTAC
*
76442661 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
76442687 TACACA
1 TACACA
76442693 CGTGACCTAA
Statistics
Matches: 40, Mismatches: 10, Indels: 12
0.65 0.16 0.19
Matches are distributed among these distances:
23 1 0.03
24 13 0.32
25 6 0.15
26 19 0.47
27 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:76442721 original size:151 final size:151
Alignment explanation
Indices: 76442459--76442849 Score: 574
Period size: 151 Copynumber: 2.6 Consensus size: 151
76442449 AAGCTCTCTA
* * * *
76442459 GTACTCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTGCACTTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
* * * *
76442524 TGCACTTAGTACTACACACGTAACTTATCCATCTGATACATGTAGTAGCCTGCACTCAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTAACCATCTAATACATGTAGTAGCCTGCACTCAGTACTAC
*
76442589 ACACGTGATCG-AAGTTAAT-AG
131 ACACGTGATCGAAACTT--TCAG
*
76442610 GTACACATAGTAGCCTGCACTTAGTACTACACATACGACCTATCAAT-TCGGTACACGTAGTAGC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCT-GGTACACGTAGTAGC
* * *
76442674 CTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACT-TAGTAGCTTGTACTTAGTACT
65 CTGCACTTAGTACTACACACGTGACCTAACCATCTAATACA-TGTAGTAGCCTGCACTCAGTACT
*
76442738 ACACACGTGATCGAAACTTTCGG
129 ACACACGTGATCGAAACTTTCAG
* *
76442761 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
76442826 TGCACTTAGTACTACACACGTGAC
66 TGCACTTAGTACTACACACGTGAC
76442850 TTAAAACTGT
Statistics
Matches: 218, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
150 2 0.01
151 210 0.96
152 6 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (151 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACCTAACCATCTAATACATGTAGTAGCCTGCACTCAGTACTAC
ACACGTGATCGAAACTTTCAG
Found at i:76442844 original size:101 final size:99
Alignment explanation
Indices: 76442459--76442895 Score: 407
Period size: 101 Copynumber: 4.3 Consensus size: 99
76442449 AAGCTCTCTA
* * * *
76442459 GTACTCATAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTGCACTTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACTTAGTAGCC
** *
76442524 TGCACTTAGTACTACACACGT-AACTTATCCATCTG
66 TGCACTTAGTACTACACACGTGAAC-TAAACTTC-G
* ** * * * * * *
76442559 ATACATGTAGTAGCCTGCACTCAGTACTACACACGTGATCGAAGTTAAT-AGGTACACATAGTAG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA--CAATCTGGTACACTTAGTAG
*** *
76442623 CCTGCACTTAGTACTACACATACGACCTATCAA-TTCG
64 CCTGCACTTAGTACTACACACGTGAACTA--AACTTCG
* * ** *
76442660 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACTTAGTAGCT
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACTTAGTAGCC
* * *
76442725 TGTACTTAGTACTACACACGTGATCGAAACTTTCGG
66 TGCACTTAGTACTACACACGTGAACTAAAC-TTC-G
* * * *
76442761 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGTAGTAGCC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACTTAGTAGCC
76442826 TGCACTTAGTACTACACACGTG-ACTTAAAACTGTC-
66 TGCACTTAGTACTACACACGTGAAC-T-AAACT-TCG
* * *
76442861 TTAAACACATAGTAGCCTACACATAGTACTACACA
1 GT--ACACATAGTAGCCTGCACTTAGTACTACACA
76442896 TGTGTTCTCA
Statistics
Matches: 269, Mismatches: 54, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
98 2 0.01
99 2 0.01
100 72 0.27
101 152 0.57
102 41 0.15
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (99 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCTGGTACACTTAGTAGCC
TGCACTTAGTACTACACACGTGAACTAAACTTCG
Found at i:76447306 original size:23 final size:23
Alignment explanation
Indices: 76447276--76447330 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
76447266 ATCCAACCGG
*
76447276 TACACATCAACTCCGTCCCACGA
1 TACACATCAACTCCGTCCCACAA
* *
76447299 TACACATCAACTCTGTCCCCCAA
1 TACACATCAACTCCGTCCCACAA
76447322 TACACATCA
1 TACACATCA
76447331 TGTGGGGATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.33, C:0.42, G:0.05, T:0.20
Consensus pattern (23 bp):
TACACATCAACTCCGTCCCACAA
Found at i:76447981 original size:29 final size:29
Alignment explanation
Indices: 76447913--76448037 Score: 153
Period size: 29 Copynumber: 4.3 Consensus size: 29
76447903 AAGTCTACAT
* *
76447913 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
**
76447941 TTATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * * *
76447970 ACACTCGTATGGCTCATTAGACCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
76447999 ATATTCATATGGACCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
76448028 ACATTCATAT
1 ACATTCATAT
76448038 ACATGCTTTC
Statistics
Matches: 79, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 20 0.25
29 59 0.75
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:76448898 original size:79 final size:79
Alignment explanation
Indices: 76448811--76448984 Score: 244
Period size: 80 Copynumber: 2.2 Consensus size: 79
76448801 AAAAGGTTAT
*
76448811 TCGGCACAAAGAAAAGTAGAAATCATTTAAAAC-CAGAGGTGAATCAAAAAGAGAA-CTTGAGTT
1 TCGGCACAAAGAAAAGTAGAAATCATTTAAAACTC-GAGGTGAATCAAAAAGAAAAGCTTGAG-T
*
76448874 AGGGGAGAACGAAAAA
64 AGGGAAGAACGAAAAA
*
76448890 TCGGCACAAAGGAAAAGTAGAAATCATTTAAAACTCGAGGTGAATCAAAAAGAAAAGTTTGAGTA
1 TCGGCACAAA-GAAAAGTAGAAATCATTTAAAACTCGAGGTGAATCAAAAAGAAAAGCTTGAGTA
* * *
76448955 GGGAAGAATGGAGAA
65 GGGAAGAACGAAAAA
*
76448970 TTGGCACAAAGAAAA
1 TCGGCACAAAGAAAA
76448985 AGAAGGAAGA
Statistics
Matches: 85, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
79 15 0.18
80 64 0.75
81 6 0.07
ACGTcount: A:0.49, C:0.10, G:0.25, T:0.16
Consensus pattern (79 bp):
TCGGCACAAAGAAAAGTAGAAATCATTTAAAACTCGAGGTGAATCAAAAAGAAAAGCTTGAGTAG
GGAAGAACGAAAAA
Found at i:76450939 original size:13 final size:13
Alignment explanation
Indices: 76450923--76450955 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
76450913 TTTGATTAAA
*
76450923 TTAGTTAATTAGT
1 TTAGATAATTAGT
76450936 TTAGATAATTAGT
1 TTAGATAATTAGT
76450949 TTA-ATAA
1 TTAGATAA
76450956 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:76453786 original size:29 final size:29
Alignment explanation
Indices: 76453744--76453829 Score: 118
Period size: 29 Copynumber: 3.0 Consensus size: 29
76453734 TAAGTAACAA
*
76453744 GCCCATTAGGCCCAAATCACACTCGTATG
1 GCCCATTAGGCCCAAATCACACTCATATG
* * *
76453773 GCCCATTAGACCCAAATCATATTCATATG
1 GCCCATTAGGCCCAAATCACACTCATATG
* *
76453802 GACCATTAGGCCCAAATCACATTCATAT
1 GCCCATTAGGCCCAAATCACACTCATAT
76453830 ACATGCTTTC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.24
Consensus pattern (29 bp):
GCCCATTAGGCCCAAATCACACTCATATG
Found at i:76461532 original size:48 final size:48
Alignment explanation
Indices: 76461461--76462205 Score: 1357
Period size: 48 Copynumber: 15.5 Consensus size: 48
76461451 CTAATCATTC
*
76461461 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
76461509 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76461557 AATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCG
76461607 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76461655 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
76461703 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76461751 AATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGTAAAGCCG
76461801 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76461849 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
76461897 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76461945 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76461993 AATGGCTAATGTG-AATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
76462040 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76462088 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76462136 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76462184 AATGGCTAGTGTGAAATATGTA
1 AATGGCTAATGTGAAATATGTA
76462206 GGCGATGTGT
Statistics
Matches: 679, Mismatches: 13, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
47 47 0.07
48 534 0.79
49 8 0.01
50 90 0.13
ACGTcount: A:0.37, C:0.06, G:0.27, T:0.30
Consensus pattern (48 bp):
AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
Found at i:76461790 original size:194 final size:192
Alignment explanation
Indices: 76461461--76462205 Score: 1375
Period size: 194 Copynumber: 3.9 Consensus size: 192
76461451 CTAATCATTC
76461461 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
76461526 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
66 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATAAGT
76461591 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
129 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
76461655 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
76461720 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATGT
66 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATATATGAGATAAGT
76461785 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
129 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
76461849 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
76461914 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTAT
66 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAAGTAT
*
76461979 ATGTGGTAAAGCCGAATGGCTAATGTG-AATATGTATGAGATAAGTATATGTGGTAAAGCCG
131 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
*
76462040 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
76462105 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATAAGTAT
66 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAAGTAT
*
76462170 ATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
131 ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
76462206 GGCGATGTGT
Statistics
Matches: 544, Mismatches: 6, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
191 187 0.34
192 52 0.10
193 2 0.00
194 303 0.56
ACGTcount: A:0.37, C:0.06, G:0.27, T:0.30
Consensus pattern (192 bp):
AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATAAGTAT
ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
Found at i:76462460 original size:37 final size:37
Alignment explanation
Indices: 76462352--76462460 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
76462342 GGAAATATAT
*
76462352 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76462389 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
76462426 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
76462461 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:76463767 original size:40 final size:40
Alignment explanation
Indices: 76463714--76464152 Score: 592
Period size: 40 Copynumber: 11.0 Consensus size: 40
76463704 GAGAGTTATA
* *
76463714 TATATTCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
76463754 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
76463794 TGTATCTGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
76463834 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
76463874 TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
76463914 TGTATCCAGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* *
76463954 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
76463994 TGTATCTGGGCTAAGTCCCGAAGAGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
76464034 TATATCCGGGCTAAGTCTCAAAGAGCATTTGTGCTAGAT-T
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-GGTGT
* *
76464074 TATATCAGGGTTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * * *
76464114 TATAACCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
76464153 ATGTGTATTC
Statistics
Matches: 351, Mismatches: 46, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
39 2 0.01
40 347 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:76464366 original size:25 final size:25
Alignment explanation
Indices: 76464316--76464366 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
76464306 TGTGTAACAA
* *
76464316 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
76464341 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
76464366 C
1 C
76464367 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:76464435 original size:29 final size:28
Alignment explanation
Indices: 76464363--76464451 Score: 99
Period size: 28 Copynumber: 3.1 Consensus size: 28
76464353 GGCACTGAGA
* *
76464363 GTGCGAGTTCTTCAACTGAGCACTATGT
1 GTGCGAGTTCTTTAATTGAGCACTATGT
**
76464391 GTGCGAGATT-GGTAATTGAGGCACTATGT
1 GTGCGAG-TTCTTTAATTGA-GCACTATGT
* *
76464420 GTGCGAGTTCTTTAATCGAGCGCTATGT
1 GTGCGAGTTCTTTAATTGAGCACTATGT
76464448 GTGC
1 GTGC
76464452 AAAATCAGTC
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
28 26 0.52
29 24 0.48
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.33
Consensus pattern (28 bp):
GTGCGAGTTCTTTAATTGAGCACTATGT
Found at i:76465928 original size:48 final size:48
Alignment explanation
Indices: 76465857--76466262 Score: 776
Period size: 48 Copynumber: 8.5 Consensus size: 48
76465847 CTAATCATTC
76465857 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
76465905 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
*
76465953 AATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
76466001 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
76466049 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
* *
76466097 AATGGCTAATATGAAATATGTATGAGATATGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
76466145 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
76466193 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
1 AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
*
76466241 AATGGCTAGTGTGAAATATGTA
1 AATGGCTAATGTGAAATATGTA
76466263 GGCGATGTGT
Statistics
Matches: 351, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 351 1.00
ACGTcount: A:0.37, C:0.06, G:0.27, T:0.30
Consensus pattern (48 bp):
AATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCG
Found at i:76466463 original size:37 final size:37
Alignment explanation
Indices: 76466413--76466498 Score: 145
Period size: 37 Copynumber: 2.3 Consensus size: 37
76466403 ATATATTCCA
*
76466413 GGTAAGACCCGATGACTATGTGTGGAGATTATGTCAG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCAG
* *
76466450 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCAG
76466487 GGTAAGACCCGA
1 GGTAAGACCCGA
76466499 ATGGCTAATG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.26, C:0.17, G:0.33, T:0.24
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCAG
Found at i:76466743 original size:305 final size:305
Alignment explanation
Indices: 76466190--76466785 Score: 1102
Period size: 305 Copynumber: 2.0 Consensus size: 305
76466180 TGTGGTAAAG
*
76466190 CCGAATGGCTAATGTGAAATATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
1 CCGAATGGCTAATGTGAAACATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
76466255 AATATGTAGGCGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGGTGTGTATTATTAGA
66 AATATGTAGGCGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGGTGTGTATTATTAGA
* * *
76466320 TATTTGATGAGGCAAATGAATTACAAATATGGCATTCGATGTGAATGTTGTAACATGTGATTAAA
131 TATTTGATGAGGCAAATGAATTACAAATATGACAGTCGATGTGAATGTTGTAAAATGTGATTAAA
*
76466385 TGTACATGAAACTTGGAAATATATTCCAGGTAAGACCCGATGACTATGTGTGGAGATTATGTCAG
196 TGTACATGAAACTTGGAAATATATTCCAGGTAAGACCCGATGACTACGTGTGGAGATTATGTCAG
*
76466450 GGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGAC
261 GGTAAGACCCGATAACTACGTGTGGAGATTTTGTCCGGGTAAGAC
76466495 CCGAATGGCTAATGTGAAACATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
1 CCGAATGGCTAATGTGAAACATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
76466560 AATATGTAGGCGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGGTGTGTATTATTAGA
66 AATATGTAGGCGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGGTGTGTATTATTAGA
76466625 TATTTGATGAGGCAAATGAATTACAAATATGACAGTCGATGTGAATGTTGTAAAATGTGATTAAA
131 TATTTGATGAGGCAAATGAATTACAAATATGACAGTCGATGTGAATGTTGTAAAATGTGATTAAA
* * *
76466690 TGTACATGAAACTTGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCG
196 TGTACATGAAACTTGGAAATATATTCCAGGTAAGACCCGATGACTACGTGTGGAGATTATGTCAG
*
76466755 GGTAAGACCCGATAACTTCGTGTGGAGATTT
261 GGTAAGACCCGATAACTACGTGTGGAGATTT
76466786 CATCTGAGCT
Statistics
Matches: 281, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
305 281 1.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (305 bp):
CCGAATGGCTAATGTGAAACATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAGTGTGA
AATATGTAGGCGATGTGTGTATATTGTGGCCGAATGACCAAATGTGAAAGGTGTGTATTATTAGA
TATTTGATGAGGCAAATGAATTACAAATATGACAGTCGATGTGAATGTTGTAAAATGTGATTAAA
TGTACATGAAACTTGGAAATATATTCCAGGTAAGACCCGATGACTACGTGTGGAGATTATGTCAG
GGTAAGACCCGATAACTACGTGTGGAGATTTTGTCCGGGTAAGAC
Found at i:76466764 original size:37 final size:37
Alignment explanation
Indices: 76466714--76466785 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
76466704 GGAAATATAT
*
76466714 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
*
76466751 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
76466786 CATCTGAGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:76469552 original size:39 final size:40
Alignment explanation
Indices: 76469453--76469634 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
76469443 AATGATGTCT
* * *
76469453 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCC
*
76469493 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
76469533 GGGCTAAG-CCCGAAAGCATTGGTGCGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
* * *
76469572 GGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT-ATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCC
*
76469612 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
76469635 AATGAGTAGC
Statistics
Matches: 120, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 75 0.62
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
Found at i:76471862 original size:33 final size:33
Alignment explanation
Indices: 76471813--76471906 Score: 127
Period size: 33 Copynumber: 2.8 Consensus size: 33
76471803 AATATGCAAA
* *
76471813 ACAGTCTAGGCTTTAGCCCTATACAGTATCAGT
1 ACAGTCTGGGCCTTAGCCCTATACAGTATCAGT
76471846 ACAGTCTGGGCCTTAGCGCC-ATACAGTATCAGT
1 ACAGTCTGGGCCTTAGC-CCTATACAGTATCAGT
* * *
76471879 ACAGCCTGAGCCTTAGCTCTATACAGTA
1 ACAGTCTGGGCCTTAGCCCTATACAGTA
76471907 ATAGTGTGGC
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
32 1 0.02
33 51 0.94
34 2 0.04
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (33 bp):
ACAGTCTGGGCCTTAGCCCTATACAGTATCAGT
Found at i:76475408 original size:33 final size:33
Alignment explanation
Indices: 76475359--76475457 Score: 117
Period size: 33 Copynumber: 3.0 Consensus size: 33
76475349 AACATACAAA
* *
76475359 ACAGCCTGGGCTTTAGCCCTATACAATAACAGT
1 ACAGTCTGGGCCTTAGCCCTATACAATAACAGT
* * **
76475392 ACAGTTTGGGCCTTAGCCCTATACAGTATTAGT
1 ACAGTCTGGGCCTTAGCCCTATACAATAACAGT
** *
76475425 ACAGTCTAAGCCTTAGCCCTATATAATAACAGT
1 ACAGTCTGGGCCTTAGCCCTATACAATAACAGT
76475458 GTGGGCCGAA
Statistics
Matches: 53, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (33 bp):
ACAGTCTGGGCCTTAGCCCTATACAATAACAGT
Found at i:76475691 original size:27 final size:27
Alignment explanation
Indices: 76475641--76475700 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
76475631 AGCTACTAGA
*
76475641 AACAGTAAATGTGGCAAAGCCACCAAT
1 AACAGTAAATGTGACAAAGCCACCAAT
* * * *
76475668 AACAGTGAATGTGACATAGTCACCAGT
1 AACAGTAAATGTGACAAAGCCACCAAT
76475695 -ACAGTA
1 AACAGTA
76475701 CTTCCTCCAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 5 0.19
27 22 0.81
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (27 bp):
AACAGTAAATGTGACAAAGCCACCAAT
Found at i:76479032 original size:18 final size:18
Alignment explanation
Indices: 76479011--76479046 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
76479001 TTAAGTGTAA
76479011 TCACAACTCTGTGTGTTC
1 TCACAACTCTGTGTGTTC
76479029 TCACAACTCTGTGTGTTC
1 TCACAACTCTGTGTGTTC
76479047 CAACCCTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.39
Consensus pattern (18 bp):
TCACAACTCTGTGTGTTC
Found at i:76484640 original size:44 final size:40
Alignment explanation
Indices: 76484580--76484680 Score: 130
Period size: 40 Copynumber: 2.4 Consensus size: 40
76484570 TCTCAATATT
*
76484580 TCGCACACTAAATGCCACATATATATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCAC--AT-T-TAGCCGAAGCTATCTCAAA
* *
76484624 TCGCACACCAAGTGCCACATTTAGCCGAAGCTATTTCAAA
1 TCGCACACTAAGTGCCACATTTAGCCGAAGCTATCTCAAA
*
76484664 CCGCACACTAAGTGCCA
1 TCGCACACTAAGTGCCA
76484681 TTCTTAGCCA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 33 0.63
41 1 0.02
42 2 0.04
44 16 0.31
ACGTcount: A:0.35, C:0.31, G:0.14, T:0.21
Consensus pattern (40 bp):
TCGCACACTAAGTGCCACATTTAGCCGAAGCTATCTCAAA
Found at i:76488989 original size:46 final size:46
Alignment explanation
Indices: 76488849--76488989 Score: 117
Period size: 46 Copynumber: 3.0 Consensus size: 46
76488839 GCCCATAAGC
* * * * * *
76488849 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--AACATCCCAGT
* * * * *
76488896 GAACTCGGACTCAACTCAACGAGTTCAGA--CACTAGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCC--CAGT
*
76488942 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCCAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCCAGT
76488988 GA
1 GA
76488990 CATGTCACTT
Statistics
Matches: 72, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
43 4 0.06
45 2 0.03
46 33 0.46
47 26 0.36
48 7 0.10
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCCAGT
Found at i:76490405 original size:55 final size:55
Alignment explanation
Indices: 76490262--76490454 Score: 198
Period size: 55 Copynumber: 3.5 Consensus size: 55
76490252 GGATATTACA
* * * * * * *
76490262 CCATGTCTTGACATGGTCTTACATGGTATCCTTACCTTAT-G-AACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGATATCCTTGCCCTATAGAAACTTATCAATT
* * *
76490315 CCATGCCTTGGCATGGTCTTACATAAGA-CCTTTGCCCTATAGAAACTTATCAATT
1 CCATGCCTTGACATGGTCTTACATGATATCC-TTGCCCTATAGAAACTTATCAATT
* *
76490370 CCATGTCTTGACATGGTCCTACATGATATCCTTG-CCT-TAGAAACCTTATCAATT
1 CCATGCCTTGACATGGTCTTACATGATATCCTTGCCCTATAGAAA-CTTATCAATT
* *
76490424 GCCATGCCTTGGCATGGTCTTACATGGTATC
1 -CCATGCCTTGACATGGTCTTACATGATATC
76490455 TTTAAACCCT
Statistics
Matches: 115, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 36 0.31
54 14 0.12
55 61 0.53
56 2 0.02
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (55 bp):
CCATGCCTTGACATGGTCTTACATGATATCCTTGCCCTATAGAAACTTATCAATT
Found at i:76494840 original size:42 final size:42
Alignment explanation
Indices: 76494717--76494842 Score: 128
Period size: 42 Copynumber: 3.0 Consensus size: 42
76494707 TAGGATTACT
* * * *
76494717 GAGATTACGTGTAAGACTATATCTAGGATATGGCATTCGTAT
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATTGGTAA
* * * *
76494759 GAGAATT-CGTGTAATACCATAGCTGGGCTATTGCCATTGGTAA
1 GAG-ATTACGTGTAAGACCATATCTGGGATA-TGGCATTGGTAA
* * *
76494802 GAGATTACATATAAGACCATATTTGGGATATGGCATTGGTA
1 GAGATTACGTGTAAGACCATATCTGGGATATGGCATTGGTA
76494843 CGGTACTGTG
Statistics
Matches: 66, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
42 34 0.52
43 32 0.48
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.32
Consensus pattern (42 bp):
GAGATTACGTGTAAGACCATATCTGGGATATGGCATTGGTAA
Found at i:76499128 original size:29 final size:27
Alignment explanation
Indices: 76499110--76499179 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
76499100 ATATTAAGTC
76499110 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
76499137 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
76499165 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
76499180 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:76499173 original size:28 final size:28
Alignment explanation
Indices: 76499110--76499207 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
76499100 ATATTAAGTC
*
76499110 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
76499137 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
76499165 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
76499194 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76499208 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:76501450 original size:30 final size:30
Alignment explanation
Indices: 76501411--76501605 Score: 137
Period size: 30 Copynumber: 6.5 Consensus size: 30
76501401 AGCCGAAGCT
76501411 ATCCCTTTTCATAATTTGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * *
76501441 ATCCTTTTTCATAGTTCGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * * * *
76501471 ATCCCTTTTCATAATTTGTTAGCCA-AAGCT
1 ATCCCTTTTCATAATTTGATGGTCATCA-CC
* * * *
76501501 ATCCCTTTTTAGAGA-TTGATAG-C-TAAATCC
1 ATCCCTTTTCATA-ATTTGATGGTCAT-CA-CC
* * * *
76501531 ATCCCTTTTCATAGTTCGATGGTCGTCACA
1 ATCCCTTTTCATAATTTGATGGTCATCACC
* * * * *
76501561 ATCCCTTTTCATAGTTCGCTGGTCGTCAAC
1 ATCCCTTTTCATAATTTGATGGTCATCACC
76501591 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
76501606 CGATAGCCAA
Statistics
Matches: 131, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
29 2 0.02
30 125 0.95
31 3 0.02
32 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCATCACC
Found at i:76501475 original size:60 final size:59
Alignment explanation
Indices: 76501411--76501605 Score: 164
Period size: 60 Copynumber: 3.3 Consensus size: 59
76501401 AGCCGAAGCT
*
76501411 ATCCCTTTTCATAATTTGATGGTCATCACCATCCTTTTTCATAGTTCGATGGTCATCACC
1 ATCCCTTTTCATAATTTGATGGTCATCACAATCCTTTTTCATAGTTCGATGGTC-TCACC
* * * * * * * *
76501471 ATCCCTTTTCATAATTTGTTAGCCA-AAGCTATCCCTTTTT-AGAGATT-GATAG-CTAAATCC
1 ATCCCTTTTCATAATTTGATGGTCATCA-CAAT-CCTTTTTCATAG-TTCGATGGTCT-CA-CC
* * * * * *
76501531 ATCCCTTTTCATAGTTCGATGGTCGTCACAATCCCTTTTCATAGTTCGCTGGTCGTCAAC
1 ATCCCTTTTCATAATTTGATGGTCATCACAATCCTTTTTCATAGTTCGATGGTC-TCACC
76501591 ATCCCTTTTCATAAT
1 ATCCCTTTTCATAAT
76501606 CGATAGCCAA
Statistics
Matches: 102, Mismatches: 23, Indels: 20
0.70 0.16 0.14
Matches are distributed among these distances:
58 1 0.01
59 11 0.11
60 77 0.75
61 12 0.12
62 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (59 bp):
ATCCCTTTTCATAATTTGATGGTCATCACAATCCTTTTTCATAGTTCGATGGTCTCACC
Found at i:76501475 original size:90 final size:90
Alignment explanation
Indices: 76501381--76501578 Score: 240
Period size: 90 Copynumber: 2.2 Consensus size: 90
76501371 AATCGAAGTT
* * * *
76501381 ATCCCTTTTCATAGTTCGACAGCCGAAGCTATCCCTTTTCATA-ATTTGAT-GGT-CATCACCAT
1 ATCCCTTTTCATAGTTCGACAGCCAAAGCTATCCCTTTTCAGAGA-TTGATAGCTAAAT--CCAT
* *
76501443 CCTTTTTCATAGTTCGATGGTCATCACC
63 CCCTTTTCATAGTTCGATGGTCATCACA
* * ** *
76501471 ATCCCTTTTCATAATTTGTTAGCCAAAGCTATCCCTTTTTAGAGATTGATAGCTAAATCCATCCC
1 ATCCCTTTTCATAGTTCGACAGCCAAAGCTATCCCTTTTCAGAGATTGATAGCTAAATCCATCCC
*
76501536 TTTTCATAGTTCGATGGTCGTCACA
66 TTTTCATAGTTCGATGGTCATCACA
76501561 ATCCCTTTTCATAGTTCG
1 ATCCCTTTTCATAGTTCG
76501579 CTGGTCGTCA
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
90 86 0.95
91 3 0.03
92 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (90 bp):
ATCCCTTTTCATAGTTCGACAGCCAAAGCTATCCCTTTTCAGAGATTGATAGCTAAATCCATCCC
TTTTCATAGTTCGATGGTCATCACA
Found at i:76501570 original size:120 final size:119
Alignment explanation
Indices: 76501411--76501627 Score: 326
Period size: 120 Copynumber: 1.8 Consensus size: 119
76501401 AGCCGAAGCT
* * * *
76501411 ATCCCTTTTCATAATTTGATGGTCATCACCATCCTTTTTCATAGTTCGATGGTCATCACCATCCC
1 ATCCCTTTTCATAATTCGATGGTCATCACAATCCCTTTTCATAGTTCGATGGTCATCAACATCCC
* *
76501476 TTTTCATAATTTGTTAGCCAAAGCTATCCCTTTTTAGAGATTGATAGCTAAATCC
66 TTTTCATAA-TCGATAGCCAAAGCTATCCCTTTTTAGAGATTGATAGCTAAATCC
* * * *
76501531 ATCCCTTTTCATAGTTCGATGGTCGTCACAATCCCTTTTCATAGTTCGCTGGTCGTCAACATCCC
1 ATCCCTTTTCATAATTCGATGGTCATCACAATCCCTTTTCATAGTTCGATGGTCATCAACATCCC
*
76501596 TTTTCATAATCGATAGCCAAAGTTATCCCTTT
66 TTTTCATAATCGATAGCCAAAGCTATCCCTTT
76501628 CCATATTCGA
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
119 20 0.23
120 66 0.77
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.38
Consensus pattern (119 bp):
ATCCCTTTTCATAATTCGATGGTCATCACAATCCCTTTTCATAGTTCGATGGTCATCAACATCCC
TTTTCATAATCGATAGCCAAAGCTATCCCTTTTTAGAGATTGATAGCTAAATCC
Found at i:76501637 original size:29 final size:29
Alignment explanation
Indices: 76501591--76501656 Score: 96
Period size: 29 Copynumber: 2.3 Consensus size: 29
76501581 GGTCGTCAAC
* *
76501591 ATCCCTTTTCATAATCGATAGCCAAAGTT
1 ATCCCTTTCCATAATCGATAGCCAAAGCT
*
76501620 ATCCCTTTCCATATTCGATAGCCAAAGCT
1 ATCCCTTTCCATAATCGATAGCCAAAGCT
*
76501649 ATTCCTTT
1 ATCCCTTT
76501657 TCATTCATCG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.36
Consensus pattern (29 bp):
ATCCCTTTCCATAATCGATAGCCAAAGCT
Found at i:76508334 original size:41 final size:40
Alignment explanation
Indices: 76508289--76508400 Score: 136
Period size: 41 Copynumber: 2.8 Consensus size: 40
76508279 AAAATTGAGA
*
76508289 AATAGTGGCGTTTTTGGTCTAAACGCCGCTAAAAACT-AAGC
1 AATAGAGGCGTTTTTGGT-TAAACGCCGCTAAAAACTGAA-C
* *
76508330 AATAGCGGCGTTTCTGGTTCAAACGCCGCTAAAAACTGAAC
1 AATAGAGGCGTTTTTGGTT-AAACGCCGCTAAAAACTGAAC
* **
76508371 AATAGAGGCGCTTTTGGAGAAACGCCGCTA
1 AATAGAGGCGTTTTTGGTTAAACGCCGCTA
76508401 TAAATCGAGG
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
40 12 0.19
41 48 0.77
42 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.23
Consensus pattern (40 bp):
AATAGAGGCGTTTTTGGTTAAACGCCGCTAAAAACTGAAC
Found at i:76508433 original size:41 final size:41
Alignment explanation
Indices: 76508377--76508590 Score: 293
Period size: 41 Copynumber: 5.2 Consensus size: 41
76508367 GAACAATAGA
* *
76508377 GGCGCTTTTGGAGAAACGCCGCTATAAATCGAGGTTTTAGC
1 GGCGCTTTTGGAGAAACGCCGCTATAGATCGAGCTTTTAGC
* * * * *
76508418 AGCGCTTTTGAAGAAACGCCGCTATAAATCAAGGTTTTAGC
1 GGCGCTTTTGGAGAAACGCCGCTATAGATCGAGCTTTTAGC
* *
76508459 GGCGCTTTTGGAGACACGCCGCTATAGATTGAGCTTTTAGC
1 GGCGCTTTTGGAGAAACGCCGCTATAGATCGAGCTTTTAGC
* *
76508500 GGCGCTTTTGGAGAAGCGCCGCTATAGATCGAGCTGTTAGC
1 GGCGCTTTTGGAGAAACGCCGCTATAGATCGAGCTTTTAGC
* * **
76508541 GACGCTTTTAGAGAAACGTTGCTATAGATCGAGCTTTTAGC
1 GGCGCTTTTGGAGAAACGCCGCTATAGATCGAGCTTTTAGC
76508582 GGCGCTTTT
1 GGCGCTTTT
76508591 TGAAAGACGC
Statistics
Matches: 152, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 152 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (41 bp):
GGCGCTTTTGGAGAAACGCCGCTATAGATCGAGCTTTTAGC
Found at i:76509185 original size:14 final size:14
Alignment explanation
Indices: 76509152--76509186 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
76509142 ATTATTTTGG
*
76509152 GGTTTAAGATTTAT
1 GGTTTAAGATTTAA
*
76509166 GATTTAAGATTTAA
1 GGTTTAAGATTTAA
76509180 GGTTTAA
1 GGTTTAA
76509187 TGTCCATGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (14 bp):
GGTTTAAGATTTAA
Found at i:76509706 original size:17 final size:18
Alignment explanation
Indices: 76509684--76509717 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76509674 TATTTATTTT
76509684 AATATA-TTAAAATTATC
1 AATATAGTTAAAATTATC
*
76509701 AATATAGTTTAAATTAT
1 AATATAGTTAAAATTAT
76509718 TTAAGAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (18 bp):
AATATAGTTAAAATTATC
Found at i:76514918 original size:31 final size:32
Alignment explanation
Indices: 76514880--76514959 Score: 98
Period size: 31 Copynumber: 2.6 Consensus size: 32
76514870 TTGTTGTATT
76514880 TTATTTATATTTATATTT-AATCTA-ATTTTTA
1 TTATTTAT-TTTATATTTGAATCTATATTTTTA
*
76514911 TTATTTATTTTAGT-TTTGATTCTATATTTTTA
1 TTATTTATTTTA-TATTTGAATCTATATTTTTA
76514943 TT-TTTATTTTA-ATTTGA
1 TTATTTATTTTATATTTGA
76514960 TAATGAATTT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
30 12 0.27
31 23 0.52
32 9 0.20
ACGTcount: A:0.26, C:0.03, G:0.04, T:0.68
Consensus pattern (32 bp):
TTATTTATTTTATATTTGAATCTATATTTTTA
Found at i:76514927 original size:19 final size:19
Alignment explanation
Indices: 76514904--76514950 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
76514894 ATTTAATCTA
*
76514904 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
76514922 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
76514942 ATTTTTATT
1 ATTTTTATT
76514951 TTAATTTGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:76521667 original size:27 final size:27
Alignment explanation
Indices: 76521625--76521753 Score: 118
Period size: 27 Copynumber: 4.8 Consensus size: 27
76521615 ATCTAGAGTT
*
76521625 CGCCACAAAAGCTATTCTTTTGTAATA
1 CGCCACAAAGGCTATTCTTTTGTAATA
* * * *
76521652 CGCCATAAAGGTTATTCTTTCAGAAAT-
1 CGCCACAAAGGCTATTCTTT-TGTAATA
*
76521679 CGCCACAAAGGCTATTCTTTTATAATA
1 CGCCACAAAGGCTATTCTTTTGTAATA
* * * * *
76521706 CTCTACAAAAGCTATTCTTTTAG-ACTT
1 CGCCACAAAGGCTATTCTTTT-GTAATA
*
76521733 CACCACAAAGGCTATTCTTTT
1 CGCCACAAAGGCTATTCTTTT
76521754 TTTATGTGTT
Statistics
Matches: 80, Mismatches: 19, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
26 3 0.04
27 73 0.91
28 4 0.05
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (27 bp):
CGCCACAAAGGCTATTCTTTTGTAATA
Found at i:76521683 original size:54 final size:54
Alignment explanation
Indices: 76521624--76521753 Score: 161
Period size: 54 Copynumber: 2.4 Consensus size: 54
76521614 CATCTAGAGT
* * * * *
76521624 TCGCCACAAAAGCTATTCTTTTGTAATACGCCATAAAGGTTATTCTTTCAGAAA
1 TCGCCACAAAGGCTATTCTTTTATAATACGCCACAAAAGCTATTCTTTCAGAAA
* * * **
76521678 TCGCCACAAAGGCTATTCTTTTATAATACTCTACAAAAGCTATTCTTTTAGACT
1 TCGCCACAAAGGCTATTCTTTTATAATACGCCACAAAAGCTATTCTTTCAGAAA
*
76521732 TCACCACAAAGGCTATTCTTTT
1 TCGCCACAAAGGCTATTCTTTT
76521754 TTTATGTGTT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (54 bp):
TCGCCACAAAGGCTATTCTTTTATAATACGCCACAAAAGCTATTCTTTCAGAAA
Found at i:76524600 original size:37 final size:37
Alignment explanation
Indices: 76524550--76524628 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
76524540 TTATTACGAA
* * * *
76524550 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAACTCATCGG
*
76524587 GTCTTACCCGGACAAAATCCCCACACGTACTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAACTCATCGG
76524624 GTCTT
1 GTCTT
76524629 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAACTCATCGG
Found at i:76524825 original size:47 final size:47
Alignment explanation
Indices: 76524747--76525114 Score: 558
Period size: 47 Copynumber: 7.7 Consensus size: 47
76524737 CCCTTCGGGA
* * * * * *
76524747 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76524794 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76524841 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
76524888 CTTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
76524935 ATTATCACATATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76524984 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
76525031 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76525080 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
76525115 AGAATCCTAA
Statistics
Matches: 297, Mismatches: 19, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 206 0.69
49 90 0.30
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76524977 original size:96 final size:96
Alignment explanation
Indices: 76524747--76525114 Score: 566
Period size: 96 Copynumber: 3.9 Consensus size: 96
76524737 CCCTTCGGGA
* * * * * * *
76524747 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
76524810 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
76524841 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76524904 ACTTTTACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
76524935 ATTATCACATATATATACACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
76525000 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
76525031 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76525096 A-TGTTCACATCCATCACAT
66 ACT-TTCACATTCATCACAT
76525115 AGAATCCTAA
Statistics
Matches: 252, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.00
94 90 0.36
95 1 0.00
96 160 0.63
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:76525103 original size:143 final size:142
Alignment explanation
Indices: 76524747--76525114 Score: 562
Period size: 143 Copynumber: 2.6 Consensus size: 142
76524737 CCCTTCGGGA
* * * * * * *
76524747 CTTATCACATT-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
76524811 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
76524876 CGGCCATTAGGC
131 CGGCCATTAGGC
* *
76524888 CTTATCACA-TATATACACTTTTACATTCATCACATCGGCCATTAGGCATTATCACATATATATA
1 CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
*
76524952 CACTTTCACATTTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
76525017 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
* *
76525031 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGC
1 CTTATCACAT-TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
76525096 A-TGTTCACATCCATCACAT
65 ACT-TTCACATTCATCACAT
76525115 AGAATCCTAA
Statistics
Matches: 205, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
140 1 0.00
141 44 0.21
142 1 0.00
143 116 0.57
145 43 0.21
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (142 bp):
CTTATCACATTATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:76545039 original size:11 final size:11
Alignment explanation
Indices: 76545020--76545056 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
76545010 AGATAAAGAA
* *
76545020 GATATGGGTAT
1 GATAAGGGTAC
76545031 GATAAGGGTAC
1 GATAAGGGTAC
76545042 GATAAGGGTAC
1 GATAAGGGTAC
76545053 GATA
1 GATA
76545057 GTTTGTGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.35, C:0.05, G:0.35, T:0.24
Consensus pattern (11 bp):
GATAAGGGTAC
Found at i:76549999 original size:79 final size:79
Alignment explanation
Indices: 76549896--76550112 Score: 260
Period size: 79 Copynumber: 2.7 Consensus size: 79
76549886 GCTCCTCGTT
*
76549896 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
1 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
*
76549961 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * * *
76549976 CAAATGCCTTCGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAG
*
76550039 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * * *
76550054 TAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTA
76550113 GCCCGGACAT
Statistics
Matches: 117, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
78 35 0.30
79 58 0.50
80 24 0.21
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
ATTAGTAACTCGCA
Found at i:76550003 original size:39 final size:40
Alignment explanation
Indices: 76549896--76550119 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
76549886 GCTCCTCGTT
*
76549896 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
76549936 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
76549976 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
76550015 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
76550054 TAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
76550095 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
76550120 CATCATTCAA
Statistics
Matches: 159, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.01
39 68 0.43
40 77 0.48
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:76557652 original size:119 final size:120
Alignment explanation
Indices: 76557472--76557707 Score: 300
Period size: 119 Copynumber: 2.0 Consensus size: 120
76557462 AGCACAACAA
*
76557472 AGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGG
1 AGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GG
* *
76557537 A-CTTAACCCAGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTT
65 ATCTTAACCCAGATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTT
* * * *
76557592 AGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCATAAATGCCTTCGG
1 AGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGG
** * * * *
76557655 ATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
65 ATCTTAACCCAGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
76557708 CATCATTCAA
Statistics
Matches: 100, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 4 0.04
119 64 0.64
120 32 0.32
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGA
TCTTAACCCAGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTT
Found at i:76557707 original size:40 final size:40
Alignment explanation
Indices: 76557472--76557707 Score: 291
Period size: 40 Copynumber: 5.9 Consensus size: 40
76557462 AGCACAACAA
* *
76557472 AGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGTTAT
1 AGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
* * *
76557512 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATTT
1 AGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
* *
76557552 AGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTT
1 AGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
*
76557592 AGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 AGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
* * *
76557631 AGTATCTCGCATAAATGCCTTC-GGATCTTAGTCCGGATAT
1 AGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATAT
* * *
76557671 GGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
76557708 CATCATTCAA
Statistics
Matches: 171, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.18
40 128 0.75
41 11 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
AGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
Found at i:76571060 original size:37 final size:37
Alignment explanation
Indices: 76571010--76571084 Score: 125
Period size: 37 Copynumber: 2.0 Consensus size: 37
76571000 ATCACATTGG
76571010 TAACAGTCAAAATGAACCATTCATCAC-TTCATATCCA
1 TAACAGTCAAAATGAACCATTCATCACATT-ATATCCA
*
76571047 TAACAGTCAAAATGAACCATTGATCACATTATATCCA
1 TAACAGTCAAAATGAACCATTCATCACATTATATCCA
76571084 T
1 T
76571085 CATAGCAATT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (37 bp):
TAACAGTCAAAATGAACCATTCATCACATTATATCCA
Found at i:76579757 original size:22 final size:22
Alignment explanation
Indices: 76579729--76579850 Score: 70
Period size: 22 Copynumber: 5.3 Consensus size: 22
76579719 TTCCACATCC
76579729 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * * *
76579751 ATCACATATATGCACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
76579775 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
76579798 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
76579822 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
76579845 ATCACA
1 ATCACA
76579851 CATACACATG
Statistics
Matches: 72, Mismatches: 16, Indels: 24
0.64 0.14 0.21
Matches are distributed among these distances:
22 26 0.36
23 13 0.18
24 13 0.18
25 20 0.28
ACGTcount: A:0.25, C:0.30, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:76580027 original size:49 final size:47
Alignment explanation
Indices: 76579701--76580299 Score: 900
Period size: 47 Copynumber: 12.6 Consensus size: 47
76579691 CCCTTCGGGA
* * *
76579701 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
76579748 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76579795 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
76579842 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
76579889 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
76579936 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
76579983 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76580032 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
76580079 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
76580126 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
76580175 ATTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
76580224 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
76580273 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
76580300 TATTCAAATA
Statistics
Matches: 521, Mismatches: 25, Indels: 12
0.93 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 335 0.64
49 184 0.35
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:76581822 original size:56 final size:56
Alignment explanation
Indices: 76581755--76581874 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
76581745 TATTAGTTTA
76581755 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
76581811 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
76581867 TTGCCCAT
1 TTGCCCAT
76581875 CATCCCTTGC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:76583612 original size:68 final size:65
Alignment explanation
Indices: 76583493--76583754 Score: 200
Period size: 68 Copynumber: 4.0 Consensus size: 65
76583483 GATTGGATGA
* * ** * * *
76583493 TACAGATA-GTATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGA
1 TACAGATATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGA
76583555 GC
64 GC
*
76583557 TACAAGATATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAG
1 TAC-AGATA-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAG
76583622 AGC
63 AGC
** * * * * *
76583625 TAC-GGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAG
1 TACAGATATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAG
76583689 AGC
63 AGC
* * *
76583692 TACGAGATA-A-AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAG
1 TAC-AGATATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAG
76583752 AGC
63 AGC
76583755 CGAACTATAT
Statistics
Matches: 159, Mismatches: 26, Indels: 27
0.75 0.12 0.13
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 28 0.18
65 8 0.05
66 23 0.14
67 30 0.19
68 47 0.30
69 3 0.02
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (65 bp):
TACAGATATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGC
Found at i:76586649 original size:16 final size:16
Alignment explanation
Indices: 76586628--76586659 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
76586618 TGATCTCCAA
76586628 CCCGAGCTAGCTTAAT
1 CCCGAGCTAGCTTAAT
76586644 CCCGAGCTAGCTTAAT
1 CCCGAGCTAGCTTAAT
76586660 AACCCAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (16 bp):
CCCGAGCTAGCTTAAT
Found at i:76595633 original size:18 final size:18
Alignment explanation
Indices: 76595610--76595644 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
76595600 ATCATAAGAG
76595610 TTTGAAATATATAATGAT
1 TTTGAAATATATAATGAT
76595628 TTTGAAATATATAATGA
1 TTTGAAATATATAATGA
76595645 CTCAGAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
TTTGAAATATATAATGAT
Found at i:76595652 original size:18 final size:18
Alignment explanation
Indices: 76595613--76595652 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
76595603 ATAAGAGTTT
* **
76595613 GAAATATATAATGATTTT
1 GAAATATATAATGACTCA
76595631 GAAATATATAATGACTCA
1 GAAATATATAATGACTCA
76595649 GAAA
1 GAAA
76595653 GATTTGAACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.50, C:0.05, G:0.12, T:0.33
Consensus pattern (18 bp):
GAAATATATAATGACTCA
Found at i:76600234 original size:19 final size:20
Alignment explanation
Indices: 76600212--76600257 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
76600202 AACGAAGAAG
*
76600212 AGAAAAAAAATATC-AAAGA
1 AGAAAAAAAATAACTAAAGA
*
76600231 AGAAAAAGAATAACTAAAGA
1 AGAAAAAAAATAACTAAAGA
76600251 AGGAAAA
1 A-GAAAA
76600258 TAACTAACAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 12 0.52
20 6 0.26
21 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.15, T:0.09
Consensus pattern (20 bp):
AGAAAAAAAATAACTAAAGA
Found at i:76600890 original size:17 final size:17
Alignment explanation
Indices: 76600831--76600890 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
76600821 GACTATAATT
*
76600831 TCACCAAGACTGTGAGC
1 TCACCAAAACTGTGAGC
**
76600848 TCACCAAATA-TGCAAGC
1 TCACCAAA-ACTGTGAGC
76600865 TCTA-CAAAACTGTGAGC
1 TC-ACCAAAACTGTGAGC
76600882 TCACCAAAA
1 TCACCAAAA
76600891 AGTACGAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 2 0.06
17 30 0.88
18 2 0.06
ACGTcount: A:0.38, C:0.28, G:0.15, T:0.18
Consensus pattern (17 bp):
TCACCAAAACTGTGAGC
Found at i:76602879 original size:19 final size:19
Alignment explanation
Indices: 76602855--76602893 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
76602845 ATTTATAAGG
76602855 ATGTTTAGAAATTCTAATT
1 ATGTTTAGAAATTCTAATT
76602874 ATGTTTAGAAATTCTAATT
1 ATGTTTAGAAATTCTAATT
76602893 A
1 A
76602894 CGTCTATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (19 bp):
ATGTTTAGAAATTCTAATT
Found at i:76605064 original size:51 final size:51
Alignment explanation
Indices: 76604946--76605052 Score: 214
Period size: 51 Copynumber: 2.1 Consensus size: 51
76604936 TATGTCATAA
76604946 TTTAGCTAACATAACAATTATTGAAATAATAGAACTTTATTCATACTGAAG
1 TTTAGCTAACATAACAATTATTGAAATAATAGAACTTTATTCATACTGAAG
76604997 TTTAGCTAACATAACAATTATTGAAATAATAGAACTTTATTCATACTGAAG
1 TTTAGCTAACATAACAATTATTGAAATAATAGAACTTTATTCATACTGAAG
76605048 TTTAG
1 TTTAG
76605053 TATACTTAAC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 56 1.00
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.36
Consensus pattern (51 bp):
TTTAGCTAACATAACAATTATTGAAATAATAGAACTTTATTCATACTGAAG
Found at i:76605848 original size:3 final size:3
Alignment explanation
Indices: 76605840--76605883 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
76605830 CTCTTTGGGA
76605840 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
76605884 AAGATCCTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:76618166 original size:10 final size:10
Alignment explanation
Indices: 76618151--76618175 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
76618141 GAATCTATCG
76618151 AAAATAAATC
1 AAAATAAATC
76618161 AAAATAAATC
1 AAAATAAATC
76618171 AAAAT
1 AAAAT
76618176 TTATTATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAAATC
Found at i:76619066 original size:23 final size:22
Alignment explanation
Indices: 76619040--76619092 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
76619030 ATTAATCAAA
*
76619040 TCAACTCAATTTTTTTTTAAATT
1 TCAAATCAA-TTTTTTTTAAATT
*
76619063 TCAAATTAATTTTTTTTAAA-T
1 TCAAATCAATTTTTTTTAAATT
*
76619084 TAAAATCAA
1 TCAAATCAA
76619093 CTCCTTCTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 8 0.31
22 11 0.42
23 7 0.27
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (22 bp):
TCAAATCAATTTTTTTTAAATT
Found at i:76619575 original size:18 final size:18
Alignment explanation
Indices: 76619544--76619581 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
76619534 TACAAATCAA
*
76619544 ATTTTTTACATTTAATAT
1 ATTTTTTACATTTAAAAT
76619562 ATTTTTTA-ATTTTAAAAT
1 ATTTTTTACA-TTTAAAAT
76619580 AT
1 AT
76619582 ATGGTGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTTTTACATTTAAAAT
Found at i:76620255 original size:15 final size:15
Alignment explanation
Indices: 76620235--76620266 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
76620225 ACCTTTATCA
76620235 CTTAGTACATTTAAT
1 CTTAGTACATTTAAT
76620250 CTTAGTACATTTAAT
1 CTTAGTACATTTAAT
76620265 CT
1 CT
76620267 CTTTTTCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.16, G:0.06, T:0.47
Consensus pattern (15 bp):
CTTAGTACATTTAAT
Found at i:76622780 original size:40 final size:40
Alignment explanation
Indices: 76622702--76622922 Score: 311
Period size: 40 Copynumber: 5.5 Consensus size: 40
76622692 ACCCAAGTAT
* *
76622702 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * **
76622741 CTTCGGGTCTTAGCCCGAATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
**
76622781 CTTCGGGACTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
76622821 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
76622861 CTTCGGGACTTAGCCCGGATATAATAATTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
76622901 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
76622923 CATCCGAATA
Statistics
Matches: 166, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 11 0.07
40 154 0.93
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:76626790 original size:40 final size:40
Alignment explanation
Indices: 76626685--76626830 Score: 168
Period size: 40 Copynumber: 3.6 Consensus size: 40
76626675 ACTCAAATTC
* *
76626685 TCGCACACTAAATGCCAAATACATAGTCGAAGCTATTTC-AA
1 TCGCACACTAAATGCC--ATACATAGCCGAAGCTATCTCGAA
* *
76626726 TCTCACACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
1 --TCGCACACTAAATGCCATACATAGCCGAAGCTATCTCGAA
* * *
76626768 TCGCACACTAAATGCCACACATAGCCAAAGCTATCTTGAA
1 TCGCACACTAAATGCCATACATAGCCGAAGCTATCTCGAA
* *
76626808 TCTCACACTAAGTGCCATACATA
1 TCGCACACTAAATGCCATACATA
76626831 ACGGAATTGT
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 55 0.61
41 19 0.21
42 2 0.02
43 14 0.16
ACGTcount: A:0.36, C:0.29, G:0.12, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAATGCCATACATAGCCGAAGCTATCTCGAA
Found at i:76628871 original size:15 final size:17
Alignment explanation
Indices: 76628846--76628878 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
76628836 GTGCAATTTA
76628846 ACAATTTCAGC-AATCT
1 ACAATTTCAGCTAATCT
76628862 ACAA-TTCAGCTAATCT
1 ACAATTTCAGCTAATCT
76628878 A
1 A
76628879 TCGAATGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (17 bp):
ACAATTTCAGCTAATCT
Found at i:76630768 original size:35 final size:35
Alignment explanation
Indices: 76630720--76630790 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
76630710 GTGGTCTCGA
76630720 AACCACTACTCCAATTTGACTAAAAATAGGCTGTT
1 AACCACTACTCCAATTTGACTAAAAATAGGCTGTT
*
76630755 AACCACTATTCCAATTTGACTAAAAATAGGCTGTT
1 AACCACTACTCCAATTTGACTAAAAATAGGCTGTT
76630790 A
1 A
76630791 CAACTGAGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (35 bp):
AACCACTACTCCAATTTGACTAAAAATAGGCTGTT
Found at i:76633569 original size:31 final size:31
Alignment explanation
Indices: 76633533--76633627 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
76633523 GGTTAAGAAA
*
76633533 AATCTCAAATGTCTATGTTACATAACGCAAG
1 AATCTCAAACGTCTATGTTACATAACGCAAG
76633564 AATCTCAAACGTCTATGTTACATAACGCAAG
1 AATCTCAAACGTCTATGTTACATAACGCAAG
76633595 AATCTCAAACGTCTATGTTACATAACGCAAG
1 AATCTCAAACGTCTATGTTACATAACGCAAG
76633626 AA
1 AA
76633628 AGCCCAATAT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (31 bp):
AATCTCAAACGTCTATGTTACATAACGCAAG
Found at i:76634115 original size:27 final size:27
Alignment explanation
Indices: 76634058--76634119 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
76634048 TTTACTCCAG
* *
76634058 TAAAATTTTGACGATTTTAACCTCTGG
1 TAAAATTTTGACAATTTTAACCTCTGA
76634085 TAAAATTATTGACAATTTT-ACCT-TCGA
1 TAAAATT-TTGACAATTTTAACCTCT-GA
76634112 TAAAATTT
1 TAAAATTT
76634120 CGAGAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 2 0.06
27 19 0.61
28 10 0.32
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (27 bp):
TAAAATTTTGACAATTTTAACCTCTGA
Found at i:76636745 original size:13 final size:13
Alignment explanation
Indices: 76636727--76636755 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
76636717 AACTGAAAAG
76636727 AATGTTTCTTCAT
1 AATGTTTCTTCAT
76636740 AATGTTTCTTCAT
1 AATGTTTCTTCAT
76636753 AAT
1 AAT
76636756 CGATACCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.07, T:0.52
Consensus pattern (13 bp):
AATGTTTCTTCAT
Found at i:76639748 original size:3 final size:3
Alignment explanation
Indices: 76639740--76639773 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
76639730 CTAATTTGGC
76639740 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
76639774 TTGTTCTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:76644310 original size:31 final size:30
Alignment explanation
Indices: 76644253--76644311 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
76644243 GTAAATACTC
* * * *
76644253 AAAATTTGAGGGATTAAAGTGTAAATATGA
1 AAAAGTTGAAGGACTAAAGTGCAAATATGA
76644283 AAAAGTTGAAGGACTAATAGTGCAAATAT
1 AAAAGTTGAAGGACTAA-AGTGCAAATAT
76644312 TTTAAGGGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.27
Consensus pattern (30 bp):
AAAAGTTGAAGGACTAAAGTGCAAATATGA
Found at i:76644586 original size:20 final size:19
Alignment explanation
Indices: 76644535--76644588 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
76644525 AATTAGATAA
76644535 TTATTATTTATTTAATATT
1 TTATTATTTATTTAATATT
* ** *
76644554 TTAATAAGATATTTATTATT
1 TT-ATTATTTATTTAATATT
76644574 TTATTATTTTATTTA
1 TTATTA-TTTATTTA
76644589 GTATATATAT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTATTATTTATTTAATATT
Found at i:76647641 original size:11 final size:11
Alignment explanation
Indices: 76647625--76647674 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
76647615 TTATGCTTAT
76647625 AAAAATAATTA
1 AAAAATAATTA
*
76647636 AAAAATAAATA
1 AAAAATAATTA
76647647 AATTAAA-AA-T-
1 AA--AAATAATTA
76647657 AAAAATAATTA
1 AAAAATAATTA
76647668 AAAAATA
1 AAAAATA
76647675 CCATCATAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
8 3 0.09
9 2 0.06
10 3 0.09
11 20 0.61
12 2 0.06
13 3 0.09
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (11 bp):
AAAAATAATTA
Found at i:76647652 original size:16 final size:16
Alignment explanation
Indices: 76647627--76647674 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 16
76647617 ATGCTTATAA
76647627 AAAT-AATTAAAAAAT
1 AAATAAATTAAAAAAT
76647642 AAATAAATT-AAAAAT
1 AAATAAATTAAAAAAT
*
76647657 AAAAATAATTAAAAAAT
1 AAATA-AATTAAAAAAT
76647674 A
1 A
76647675 CCATCATAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 14 0.48
16 8 0.28
17 7 0.24
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (16 bp):
AAATAAATTAAAAAAT
Found at i:76648191 original size:132 final size:133
Alignment explanation
Indices: 76647919--76648192 Score: 311
Period size: 132 Copynumber: 2.1 Consensus size: 133
76647909 CTATCTAACC
* ** * * *
76647919 ATCTAACAAAAGTTCTAATATGTTAAAAAACATTAATTAAAAATTTAAAAAGCTTGAAGCAATGT
1 ATCTAACCAAAGAACTAATATATTAAAAAACATTAATTAAAAAATTAAAAAGCTTGAAGCAATAT
* * * * * ***
76647984 GAAATAAAAAAATAAAAATATGAGTAAGAGATGAACCGAATTCGAGACTCAAGGATATAATTTCA
66 GAAATAAAAAAATAAAAATATAAGTAAGAAATGAACCGAACTCAAAACTCAAGGATATAAAAACA
*
76648049 ACT
131 AAT
*
76648052 ATCTAACCAAAGAACTAATATATTAAAAAA-ATTATTTAAAAAATTAAAAAGCTTGAAGCAATAT
1 ATCTAACCAAAGAACTAATATATTAAAAAACATTAATTAAAAAATTAAAAAGCTTGAAGCAATAT
* * * * *
76648116 GAAAT-AAAAAATACAAATGTAAGTAGGAAATGAATCGAACTCAAAACTCAATGATA-AAAAACA
66 GAAATAAAAAAATAAAAATATAAGTAAGAAATGAACCGAACTCAAAACTCAAGGATATAAAAACA
76648179 CTAAT
131 --AAT
*
76648184 ATTTAACCA
1 ATCTAACCA
76648193 TTTAGCCAAA
Statistics
Matches: 117, Mismatches: 22, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
130 4 0.03
131 41 0.35
132 46 0.39
133 26 0.22
ACGTcount: A:0.54, C:0.11, G:0.11, T:0.25
Consensus pattern (133 bp):
ATCTAACCAAAGAACTAATATATTAAAAAACATTAATTAAAAAATTAAAAAGCTTGAAGCAATAT
GAAATAAAAAAATAAAAATATAAGTAAGAAATGAACCGAACTCAAAACTCAAGGATATAAAAACA
AAT
Found at i:76652571 original size:40 final size:39
Alignment explanation
Indices: 76652519--76652702 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
76652509 TAACTCATTC
*
76652519 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-TTTAAAACTCGCACA
*** *
76652559 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAAAACTCGCACA
* *
76652599 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAA-AACTCGCACA
* ** * ** *
76652639 AATACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-AAAC-TCGCACA
*
76652680 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
76652703 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 22, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.04
40 99 0.85
41 12 0.10
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAAAACTCGCACA
Found at i:76652581 original size:79 final size:80
Alignment explanation
Indices: 76652482--76652702 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
76652472 CTCGTTCAAG
* * ** * *
76652482 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
76652545 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
76652561 TGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
76652626 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
76652641 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
76652703 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 20, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
78 1 0.01
79 36 0.31
80 73 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:76652662 original size:80 final size:80
Alignment explanation
Indices: 76652522--76652702 Score: 210
Period size: 80 Copynumber: 2.3 Consensus size: 80
76652512 CTCATTCAAT
* * *
76652522 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
76652586 GGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
76652601 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
76652664 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
76652682 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
76652703 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 7 0.08
80 70 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:76658977 original size:42 final size:42
Alignment explanation
Indices: 76658875--76659020 Score: 175
Period size: 42 Copynumber: 3.5 Consensus size: 42
76658865 CGAATCCATT
* * * * *
76658875 ATGAACTTGGACCACTCAACGAGCTCGGATGCTCGCATCTATA
1 ATGAACCTGGACCACTCAACGAGCTAGGATGC-CACATATATC
* * *
76658918 ATGAACTTGAACCACTCAATGAGCTAGGATGCCACATATATC
1 ATGAACCTGGACCACTCAACGAGCTAGGATGCCACATATATC
* *
76658960 ATGAACCTAGACCACTCAACGAGTTAGGATGCCACATATATC
1 ATGAACCTGGACCACTCAACGAGCTAGGATGCCACATATATC
* *
76659002 ACGAACCCGGACCACTCAA
1 ATGAACCTGGACCACTCAA
76659021 TGAATTTGGA
Statistics
Matches: 89, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 60 0.67
43 29 0.33
ACGTcount: A:0.34, C:0.28, G:0.18, T:0.21
Consensus pattern (42 bp):
ATGAACCTGGACCACTCAACGAGCTAGGATGCCACATATATC
Found at i:76666927 original size:43 final size:43
Alignment explanation
Indices: 76666879--76666964 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
76666869 ATCACATGTA
* * *
76666879 TCGCATCCATTATGAACTCGGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATGAACTCGAACCACTCAACGAGCTAGGATGC
* *
76666922 TCGCATCTATAATGAACTTGAACCACTCAACGAGCTAGGATGC
1 TCGCATCCATAATGAACTCGAACCACTCAACGAGCTAGGATGC
76666965 CACATATATC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGAACCACTCAACGAGCTAGGATGC
Done.