Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 227 of 345
Found at i:77074899 original size:42 final size:41
Alignment explanation
Indices: 77074839--77074953 Score: 122
Period size: 44 Copynumber: 2.7 Consensus size: 41
77074829 TCTATGCCAC
* * *
77074839 TGTCTCAGACAAGGTCTTACACGAAATCAAATACGAGGCCGA
1 TGTCTCAGACATGGTCTTACACGAAATCAAAT-CGAGACCAA
* *
77074881 TGTCCCAGACATGGTCTTACACGTAAATCTCAAATCGATACCAA
1 TGTCTCAGACATGGTCTTACACG-AAA--TCAAATCGAGACCAA
* * *
77074925 CGTCTCAGACGTTGTCTTACACGAAATCA
1 TGTCTCAGACATGGTCTTACACGAAATCA
77074954 CATATCAGAA
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
41 3 0.05
42 21 0.34
43 6 0.10
44 25 0.41
45 6 0.10
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.23
Consensus pattern (41 bp):
TGTCTCAGACATGGTCTTACACGAAATCAAATCGAGACCAA
Found at i:77076557 original size:39 final size:39
Alignment explanation
Indices: 77076485--77076664 Score: 145
Period size: 40 Copynumber: 4.7 Consensus size: 39
77076475 ATTTGAGAAC
* * *
77076485 CTTTTAGTAGAATTAGTAGTTATGTCTCAATAGAGCATA
1 CTTTTAGTAGAATCAGTAGGTATGGCTCAATAGAGCATA
* *
77076524 CTTTTAGTAGAATCCGTAGGTATGGCTCTATAGAGCATA
1 CTTTTAGTAGAATCAGTAGGTATGGCTCAATAGAGCATA
* * *
77076563 C-TTT--T-GAATCAGTAGGTTTGGCTCAATAGCGTATA
1 CTTTTAGTAGAATCAGTAGGTATGGCTCAATAGAGCATA
* * * * * *
77076598 CATTTCAATA-AATTTAGTAGGTATGGTTCAATATAACATA
1 C-TTTTAGTAGAA-TCAGTAGGTATGGCTCAATAGAGCATA
* * *
77076638 CATTTCAATAGATTCAGTAGGTATGGC
1 C-TTTTAGTAGAATCAGTAGGTATGGC
77076665 ATAATAACGC
Statistics
Matches: 113, Mismatches: 21, Indels: 13
0.77 0.14 0.09
Matches are distributed among these distances:
35 26 0.23
36 1 0.01
37 2 0.02
38 3 0.03
39 38 0.34
40 42 0.37
41 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (39 bp):
CTTTTAGTAGAATCAGTAGGTATGGCTCAATAGAGCATA
Found at i:77077845 original size:55 final size:56
Alignment explanation
Indices: 77077780--77077894 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
77077770 AGCATGGCTG
* *
77077780 CCAGATACAGA-AAATGTGACAAAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAAAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * **
77077836 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAAAGCCACCAGAACAGATAATTTGTGGCATAGCCA
77077891 CCAG
1 CCAG
77077895 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAAAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:77077857 original size:27 final size:27
Alignment explanation
Indices: 77077805--77077894 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
77077795 GTGACAAAGT
77077805 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
77077834 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
77077861 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
77077889 CACCAG
1 CACCAG
77077895 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:77078047 original size:28 final size:28
Alignment explanation
Indices: 77078000--77078064 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
77077990 AAATTAACCC
*
77078000 TAGGGGTATAAAGGTCATTTGGCACACA
1 TAGGGGTATAAAGGTAATTTGGCACACA
* * *
77078028 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTGGCACACA
77078056 TAGGGGTAT
1 TAGGGGTAT
77078065 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.09, G:0.29, T:0.31
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTGGCACACA
Found at i:77090321 original size:25 final size:25
Alignment explanation
Indices: 77090287--77090347 Score: 97
Period size: 25 Copynumber: 2.4 Consensus size: 25
77090277 GTTGGTTGAA
77090287 AGTCGAAAACAACAAGGATCCTTCT
1 AGTCGAAAACAACAAGGATCCTTCT
*
77090312 AGTCGAAAACAATAAGGATCCTTCT
1 AGTCGAAAACAACAAGGATCCTTCT
77090337 AG-CTGAAAACA
1 AGTC-GAAAACA
77090348 TAGGTGAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 1 0.03
25 33 0.97
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (25 bp):
AGTCGAAAACAACAAGGATCCTTCT
Found at i:77092863 original size:27 final size:27
Alignment explanation
Indices: 77092820--77093039 Score: 248
Period size: 27 Copynumber: 8.1 Consensus size: 27
77092810 TGGGCCATGT
*
77092820 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
**
77092847 TGATTGAAATACTCCC-ATAGGGTAAAA
1 TGACCGAAATAC-CCCTATAGGGTAAAA
* *
77092874 TGATCAAAATACCCCTATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* *
77092901 TGACCGAAATA-CCTTCATAAGGTAAAA
1 TGACCGAAATACCCCT-ATAGGGTAAAA
77092928 TGACCGAAATACCCCTATAGGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
*
77092955 TGACCGAAATACCCCTATAAGGTAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
* * *
77092982 TGA-CTATAATACCCCTGTAGGGTAGAA
1 TGACCGA-AATACCCCTATAGGGTAAAA
** * * *
77093009 TGATTGTAATACCCCTATAAGATAAAA
1 TGACCGAAATACCCCTATAGGGTAAAA
77093036 TGAC
1 TGAC
77093040 TGATTTGCCT
Statistics
Matches: 164, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
26 8 0.05
27 150 0.91
28 6 0.04
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (27 bp):
TGACCGAAATACCCCTATAGGGTAAAA
Found at i:77093491 original size:33 final size:33
Alignment explanation
Indices: 77093438--77093526 Score: 92
Period size: 34 Copynumber: 2.7 Consensus size: 33
77093428 TACTGTACGA
* *
77093438 ATTCTGTAATGGGCTTAGGCCCCACTGATAT-TG
1 ATTCTGAAATGGGCTAAGGCCCCACT-ATATCTG
* * *
77093471 -TTACTGAAATGGGCTCAGGCCTACACTATTTCTG
1 ATT-CTGAAATGGGCTAAGGCC-CCACTATATCTG
77093505 ATTCTGAAATGGGCTAAGGCCC
1 ATTCTGAAATGGGCTAAGGCCC
77093527 TAACTAAAAC
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
32 2 0.04
33 19 0.41
34 23 0.50
35 2 0.04
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (33 bp):
ATTCTGAAATGGGCTAAGGCCCCACTATATCTG
Found at i:77094917 original size:68 final size:68
Alignment explanation
Indices: 77094778--77094932 Score: 170
Period size: 68 Copynumber: 2.3 Consensus size: 68
77094768 TTAAAAGAGG
** * * *** * * *
77094778 TATAATGTGTAAGACCATGCCTGGGCTATGATAACATATGAAGTCCTTTAGGATAGTTGACATGG
1 TATAATGTGTAAGACCATAACTGGGCGATGAAAACATATGAAGTCCACCACGATAGATGACAAGG
77094843 GAT
66 GAT
77094846 TATAATGTGTAAGACCATAACTGGGCGATGAAAACATATGAAGTCCACCACGATA-ATGAACAAG
1 TATAATGTGTAAGACCATAACTGGGCGATGAAAACATATGAAGTCCACCACGATAGATG-ACAAG
*
77094910 ATG-T
65 -GGAT
*
77094914 TATAATGTGTAAAACCATA
1 TATAATGTGTAAGACCATA
77094933 GCGGGGCTTT
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
67 2 0.03
68 70 0.96
69 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.27
Consensus pattern (68 bp):
TATAATGTGTAAGACCATAACTGGGCGATGAAAACATATGAAGTCCACCACGATAGATGACAAGG
GAT
Found at i:77097196 original size:29 final size:30
Alignment explanation
Indices: 77097129--77097243 Score: 134
Period size: 29 Copynumber: 4.0 Consensus size: 30
77097119 TACATACATG
*
77097129 CATATGGCCCAT-TGGGCCCAA-TC-TCATT
1 CATATGGCCCATCTAGGCCCAATTCAT-ATT
*
77097157 CATATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
77097186 CTTATGGCCCA-CTAGGCCCAATTCACATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
77097215 CATATGGCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
77097244 ATACTCATGC
Statistics
Matches: 75, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
28 20 0.27
29 54 0.72
30 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:77097233 original size:58 final size:57
Alignment explanation
Indices: 77097131--77097243 Score: 156
Period size: 58 Copynumber: 2.0 Consensus size: 57
77097121 CATACATGCA
* * * **
77097131 TATGGCCCATTGGGCCCAATCTCATTCATATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAAATCATATTCT
77097188 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATTCATATGGCCCATCT-GGCCCAAATCATATT
77097244 ATACTCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 18 0.37
58 31 0.63
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATGGCCCATCTGGCCCAAATCATATTCT
Found at i:77097484 original size:16 final size:16
Alignment explanation
Indices: 77097463--77097517 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
77097453 CCCAATTTTT
77097463 GACTTTTCGGTATTTC
1 GACTTTTCGGTATTTC
77097479 GACTTTTCGGCT-TTTC
1 GACTTTTCGG-TATTTC
* *
77097495 GACATTTCGGCATTTC
1 GACTTTTCGGTATTTC
*
77097511 GAATTTT
1 GACTTTT
77097518 GCTGATTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 32 0.97
17 1 0.03
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (16 bp):
GACTTTTCGGTATTTC
Found at i:77097510 original size:24 final size:24
Alignment explanation
Indices: 77097465--77097511 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
77097455 CAATTTTTGA
** *
77097465 CTTTTCGGTATTTCGACTTTTCGG
1 CTTTTCGACATTTCGACATTTCGG
*
77097489 CTTTTCGACATTTCGGCATTTCG
1 CTTTTCGACATTTCGACATTTCG
77097512 AATTTTGCTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.23, G:0.19, T:0.47
Consensus pattern (24 bp):
CTTTTCGACATTTCGACATTTCGG
Found at i:77105637 original size:21 final size:21
Alignment explanation
Indices: 77105613--77105682 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 21
77105603 CACATACATC
77105613 ATGAACTCAGACCATAACTCA
1 ATGAACTCAGACCATAACTCA
* *
77105634 ATGAGCTCAAATGTCACATATA-TC-
1 ATGAACTC--A-GAC-CATA-ACTCA
*
77105658 ATGAACTCAGACCACAACTCA
1 ATGAACTCAGACCATAACTCA
77105679 ATGA
1 ATGA
77105683 GTTCAGATCA
Statistics
Matches: 37, Mismatches: 5, Indels: 14
0.66 0.09 0.25
Matches are distributed among these distances:
19 1 0.03
20 5 0.14
21 13 0.35
22 1 0.03
23 1 0.03
24 9 0.24
25 6 0.16
26 1 0.03
ACGTcount: A:0.41, C:0.26, G:0.11, T:0.21
Consensus pattern (21 bp):
ATGAACTCAGACCATAACTCA
Found at i:77114319 original size:29 final size:29
Alignment explanation
Indices: 77114279--77114377 Score: 119
Period size: 29 Copynumber: 3.4 Consensus size: 29
77114269 ATGTGACTGA
*
77114279 GCCTAACGGGCCATATAAATGTGATTTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
* * *
77114308 GCCTAATGGGCCATATACAGGTGATTTAG
1 GCCTAATGGGCCATATAAATGTGATTTGG
* *
77114337 GCCTAATGGGCCATATGAATATGA-TTGG
1 GCCTAATGGGCCATATAAATGTGATTTGG
**
77114365 GTTTAATGGGCCA
1 GCCTAATGGGCCA
77114378 GATACAGGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
28 14 0.24
29 45 0.76
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
GCCTAATGGGCCATATAAATGTGATTTGG
Found at i:77121960 original size:39 final size:40
Alignment explanation
Indices: 77121846--77122030 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
77121836 GCTACTCATT
*
77121846 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
77121886 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
77121926 CCAATGCCTTTGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
77121965 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
77122006 CAAA-GCCTTCGGGACTTAGCGCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77122031 CATCATTCGA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77122014 original size:79 final size:79
Alignment explanation
Indices: 77121846--77122030 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 79
77121836 GCTACTCATT
* *
77121846 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
77121910 GATTTAGTAACTCGTAC
64 GATATAGTAACTC-TAC
* * **
77121927 CAATGCCTTTGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
77121990 ATATGGTCACT-TAGC
65 ATATAGTAACTCTA-C
*
77122005 ACAAAGCCTTCGGGACTTAGCGCGGA
1 -CAAAGCCTTCGGGACTTAGCCCGGA
77122031 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
77 2 0.02
78 4 0.05
79 59 0.68
80 19 0.22
81 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTCTAC
Found at i:77129985 original size:40 final size:40
Alignment explanation
Indices: 77129892--77130059 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
77129882 CTCGTTCAAC
* * * *
77129892 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAA
* *
77129931 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAA
* *
77129971 TGCCTTCGGAACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAA
* * *
77130011 GGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCACAAA
77130051 TGCCTTCGG
1 TGCCTTCGG
77130060 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 32 0.28
40 78 0.68
41 4 0.04
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAA
Found at i:77130072 original size:80 final size:78
Alignment explanation
Indices: 77129892--77130105 Score: 214
Period size: 80 Copynumber: 2.7 Consensus size: 78
77129882 CTCGTTCAAC
* * *
77129892 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATTTA
1 TGCCTTC-GGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATTTA
*
77129957 ATAACTCGCACGAA
65 ATAACTCGCACAAA
* * * *
77129971 TGCCTTCGGAACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATT
1 TGCCTTCGG-ACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACTTAACCCGG-ATT
* *
77130036 T-GTATCTCGCACAAA
63 TAATAACTCGCACAAA
* * * * * * *
77130051 TGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTTGGGACTTA
1 TGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGACTTA
77130106 GCTCGGACAG
Statistics
Matches: 109, Mismatches: 21, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
78 2 0.02
79 30 0.28
80 70 0.64
81 7 0.06
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.28
Consensus pattern (78 bp):
TGCCTTCGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATTTAA
TAACTCGCACAAA
Found at i:77145194 original size:13 final size:13
Alignment explanation
Indices: 77145176--77145200 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77145166 GATTTACCAC
77145176 TTATCATGCAATA
1 TTATCATGCAATA
77145189 TTATCATGCAAT
1 TTATCATGCAAT
77145201 GTAATTACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TTATCATGCAATA
Found at i:77147421 original size:40 final size:40
Alignment explanation
Indices: 77147360--77147458 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
77147350 TTATACTCTC
* * * *
77147360 TGTCTAGTGTGTTTTGGTTGGATTAGCTCTTATGAGCTTA
1 TGTCTAGTGTGTTTCGATTGGACTAGCCCTTATGAGCTTA
* *
77147400 TGTCTAGTGTGTTTCGATTGGACTAGCCCTTTTGAGCTTT
1 TGTCTAGTGTGTTTCGATTGGACTAGCCCTTATGAGCTTA
* *
77147440 TTTCTGGTGTG-TTCGATTG
1 TGTCTAGTGTGTTTCGATTG
77147459 TATGATGATA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 8 0.16
40 43 0.84
ACGTcount: A:0.12, C:0.13, G:0.27, T:0.47
Consensus pattern (40 bp):
TGTCTAGTGTGTTTCGATTGGACTAGCCCTTATGAGCTTA
Found at i:77149921 original size:14 final size:16
Alignment explanation
Indices: 77149887--77149924 Score: 53
Period size: 14 Copynumber: 2.4 Consensus size: 16
77149877 GAGAAAAAAA
77149887 GATGAGAGAATGTGATG
1 GATGAGAGAATGT-ATG
77149904 GATGAG-GAATGT-TG
1 GATGAGAGAATGTATG
77149918 GATGAGA
1 GATGAGA
77149925 TGCTTGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.40
16 6 0.30
17 6 0.30
ACGTcount: A:0.34, C:0.00, G:0.42, T:0.24
Consensus pattern (16 bp):
GATGAGAGAATGTATG
Found at i:77151209 original size:23 final size:22
Alignment explanation
Indices: 77151174--77151222 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
77151164 TAACTAACAT
* *
77151174 TTCACAACTTAAT-AAACATTCA
1 TTCACAACATAATCAAA-ATCCA
77151196 TTCACAATCATAATCAAAATCCA
1 TTCACAA-CATAATCAAAATCCA
77151219 TTCA
1 TTCA
77151223 TATGAATCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 7 0.30
23 13 0.57
24 3 0.13
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.31
Consensus pattern (22 bp):
TTCACAACATAATCAAAATCCA
Found at i:77153059 original size:20 final size:20
Alignment explanation
Indices: 77153036--77153094 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
77153026 TAAACATGGT
77153036 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
* **
77153056 ATGTATGCTATGCACATGGT
1 ATGTATGATATGCACATGAC
77153076 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
77153095 TGTATTCATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.32, C:0.14, G:0.22, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:77153266 original size:24 final size:23
Alignment explanation
Indices: 77153146--77153264 Score: 202
Period size: 23 Copynumber: 5.1 Consensus size: 23
77153136 AGGAAGTGCA
77153146 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
77153169 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
77153192 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
77153215 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
77153238 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
77153262 AAA
1 AAA
77153265 AGAGGCTAGG
Statistics
Matches: 92, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
23 71 0.77
24 21 0.23
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:77153514 original size:31 final size:31
Alignment explanation
Indices: 77153479--77153542 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
77153469 CGTTTACAGT
77153479 AAAGGCTTT-GGCCCAGTAATATGAAATATGA
1 AAAGG-TTTCGGCCCAGTAATATGAAATATGA
**
77153510 AAAGGTTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGTTTCGGCCCAGTAATATGAAATATGA
77153541 AA
1 AA
77153543 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 3 0.10
31 27 0.90
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGTTTCGGCCCAGTAATATGAAATATGA
Found at i:77156378 original size:39 final size:40
Alignment explanation
Indices: 77156315--77156529 Score: 280
Period size: 39 Copynumber: 5.5 Consensus size: 40
77156305 TGGATGATAA
*
77156315 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-T
77156355 CCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTTACTA-AT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
77156393 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* **
77156433 CCGGGCTAAGTCCCGAAGGCATTTGT-CGAACTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
* *
77156472 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTA-CTATAT
* *
77156512 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
77156530 TACTTGGTTT
Statistics
Matches: 161, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
38 11 0.07
39 101 0.63
40 49 0.30
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAT
Found at i:77156525 original size:118 final size:118
Alignment explanation
Indices: 77156315--77156529 Score: 287
Period size: 118 Copynumber: 1.8 Consensus size: 118
77156305 TGGATGATAA
* * *
77156315 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCGAAGGCATTTGA
* * *
77156380 GCTAGTTACTAATTCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
66 GCGAGTTACTAATTCCGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
77156433 CCGGGCTAAGTCCCGAAGGCATTTGT-CGAACT-ACT-ATATCCGGGCTAAGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AACTGACTAAT-TCCGGGCTAAGT-CCGAAGGCATT
*
77156495 TGAGCGAG-TAGCT-ATATCCGGTTAAATCCCGAAGG
63 TGAGCGAGTTA-CTAAT-TCCGGCTAAATCCCGAAGG
77156530 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
116 2 0.02
117 20 0.24
118 63 0.74
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (118 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAACTGACTAATTCCGGGCTAAGTCCGAAGGCATTTGA
GCGAGTTACTAATTCCGGCTAAATCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:77164408 original size:40 final size:40
Alignment explanation
Indices: 77164353--77164566 Score: 285
Period size: 40 Copynumber: 5.4 Consensus size: 40
77164343 ATGATAACCT
* * *
77164353 GGCTAACTCTCGAAGGCCTTTGTGCGAGTTACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
*
77164393 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCA
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCG
77164433 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
**
77164473 GGCTAAGTCCC-AAGGCATTTGTGCGAACTACTATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
*
77164512 GGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCG
* *
77164551 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
77164567 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 53 0.33
40 106 0.66
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG
Found at i:77164529 original size:79 final size:80
Alignment explanation
Indices: 77164353--77164566 Score: 285
Period size: 79 Copynumber: 2.7 Consensus size: 80
77164343 ATGATAACCT
* * *
77164353 GGCTAACTCTCGAAGGCCTTTGTGCGAGTTACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTG
**
77164417 CGAGTTACTAATTCCA
65 CGAACTACTAATTCCA
77164433 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCC-AAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
77164497 GAACTACT-ATATCCG
66 GAACTACTAAT-TCCA
* * *
77164512 GGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
77164567 TACTTGGTTT
Statistics
Matches: 121, Mismatches: 9, Indels: 9
0.87 0.06 0.06
Matches are distributed among these distances:
78 13 0.11
79 61 0.50
80 46 0.38
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAACTACTAATTCCA
Found at i:77166231 original size:25 final size:24
Alignment explanation
Indices: 77166124--77166269 Score: 188
Period size: 25 Copynumber: 6.0 Consensus size: 24
77166114 GGTTTATCAT
*
77166124 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
77166149 ATAACTGGGGCA-AAACCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
77166172 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
* *
77166196 ATAACTAGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
77166221 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
77166246 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77166270 CACTTCTTCC
Statistics
Matches: 109, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
23 17 0.16
24 37 0.34
25 55 0.50
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77166237 original size:49 final size:48
Alignment explanation
Indices: 77166124--77166268 Score: 195
Period size: 49 Copynumber: 3.0 Consensus size: 48
77166114 GGTTTATCAT
* * *
77166124 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAACCCTTTTG
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTC
*
77166172 ATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT-TC
*
77166221 ATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTT-TAATAACTGGGGCATAAGCCCTTTT
77166269 ACACTTCTTC
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
47 21 0.24
48 20 0.23
49 24 0.28
50 22 0.25
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTC
Found at i:77166344 original size:20 final size:20
Alignment explanation
Indices: 77166319--77166357 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
77166309 TATGAATACA
77166319 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
77166339 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
77166358 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:77166363 original size:20 final size:20
Alignment explanation
Indices: 77166320--77166364 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
77166310 ATGAATACAT
**
77166320 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
77166340 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
77166360 CATGT
1 CATGT
77166365 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:77173933 original size:30 final size:31
Alignment explanation
Indices: 77173897--77173958 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 31
77173887 CCTTTTCATA
77173897 TTCATATTTCATAACACT-GGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
** *
77173927 TTCATATTTCATATTACTGGGTCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
77173958 T
1 T
77173959 ACTGTAAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 16 0.57
31 12 0.43
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:77174201 original size:23 final size:24
Alignment explanation
Indices: 77174152--77174294 Score: 195
Period size: 25 Copynumber: 6.0 Consensus size: 24
77174142 ACTTTATCAT
*
77174152 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
77174177 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
77174200 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
77174223 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
*
77174248 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
77174273 ATAACTGGGGCATAAG-CCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
77174295 CACTTCCTCA
Statistics
Matches: 112, Mismatches: 2, Indels: 10
0.90 0.02 0.08
Matches are distributed among these distances:
23 42 0.38
24 20 0.18
25 50 0.45
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:77174253 original size:48 final size:47
Alignment explanation
Indices: 77174173--77174294 Score: 194
Period size: 48 Copynumber: 2.6 Consensus size: 47
77174163 CCTAGCCTCT
77174173 TTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
77174219 TTTAATAACTGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTT-TAATAACTGGGGCATAAGCCC
77174267 TTTATCATAACTGGGGCATAAG-CCTTTT
1 TTTA--ATAACTGGGGCATAAGCCCTTTT
77174295 CACTTCCTCA
Statistics
Matches: 71, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
46 16 0.23
47 9 0.13
48 25 0.35
49 5 0.07
50 16 0.23
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:77174368 original size:20 final size:20
Alignment explanation
Indices: 77174343--77174381 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
77174333 TATGAATACA
77174343 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
77174363 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
77174382 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:77174387 original size:20 final size:20
Alignment explanation
Indices: 77174344--77174388 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
77174334 ATGAATACAT
**
77174344 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
77174364 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
77174384 CATGT
1 CATGT
77174389 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:77178149 original size:79 final size:81
Alignment explanation
Indices: 77178013--77178195 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
77178003 TCGAATGATG
* *
77178013 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
77178077 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
77178092 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
77178154 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
77178172 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
77178196 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:77178211 original size:40 final size:40
Alignment explanation
Indices: 77178014--77178197 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
77178004 CGAATGATGT
* * * *
77178014 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
77178054 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
77178094 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
77178132 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
77178173 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
77178198 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:77178219 original size:79 final size:79
Alignment explanation
Indices: 77178066--77178220 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
77178056 GGACTAAGAT
* **
77178066 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
77178131 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
77178145 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
77178208 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
77178221 ATTCGAAGGT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:77188150 original size:65 final size:67
Alignment explanation
Indices: 77188023--77188150 Score: 179
Period size: 65 Copynumber: 1.9 Consensus size: 67
77188013 TACTATGTGT
* * * *
77188023 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGCGTGGTACCAAGTGAA
77188088 GG
66 GG
* * *
77188090 ACACCATGTA-ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGCGTGGTACCAAGTG
77188151 TTCACCATGT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 24 0.44
66 20 0.37
67 10 0.19
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (67 bp):
ACACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTCACATGCGTGGTACCAAGTGAA
GG
Found at i:77188596 original size:41 final size:41
Alignment explanation
Indices: 77188273--77188595 Score: 377
Period size: 41 Copynumber: 8.0 Consensus size: 41
77188263 TTTTAAAATA
* * *
77188273 CAGAGCAATAGCGGCG-TTTTAAGAAAAACGCCGCTAAAAA-
1 CAGAGCATTAGCGGCGCTTTT-GGTAAAACGCCGCTAAAAAC
* ** ** **
77188313 TAGAGCAACAGCGGCATTTTTTACTAAAACGCCGCTAAAAA-
1 CAGAGCATTAGCGGC-GCTTTTGGTAAAACGCCGCTAAAAAC
*
77188354 CAGAGCATTAGCGGCGCTTTT-GTAAAACGCCGCT-ATAAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* * *
77188393 CAGATCATTAGCGGTGCTTTGGGTAAAACGCCGCTAAAAAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* * *
77188434 CAGATCATTAGCGGCTCTTTGGGTAAAACGCCGCTAAAAAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* * *
77188475 CAAAGCATTAGCGGCGCTTTCGGTAAAACGTCGCTAAAAAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* * *
77188516 CAGTGTATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAGC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
*
77188557 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCTGCTAAAA
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
77188596 GTCATAAAAC
Statistics
Matches: 246, Mismatches: 32, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
38 3 0.01
39 30 0.12
40 30 0.12
41 179 0.73
42 4 0.02
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (41 bp):
CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
Found at i:77188844 original size:36 final size:38
Alignment explanation
Indices: 77188775--77188849 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 38
77188765 ATAGTTTAAG
* *
77188775 ATATATGGTTTAGGGTTTAAGCAGGTTTAGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTAGAGTTAACT
77188813 ATATATGGTTTAAGATTT-A-C-GGTTTAGGAGTTAACT
1 ATATATGGTTTAAGATTTAAGCAGGTTTA-GAGTTAACT
77188849 A
1 A
77188850 GTATTTGAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
35 6 0.18
36 11 0.32
37 1 0.03
38 16 0.47
ACGTcount: A:0.31, C:0.05, G:0.24, T:0.40
Consensus pattern (38 bp):
ATATATGGTTTAAGATTTAAGCAGGTTTAGAGTTAACT
Found at i:77189039 original size:25 final size:25
Alignment explanation
Indices: 77189010--77189061 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
77189000 GTGATTTTGA
77189010 ATGTGGAATTAGCATTTGTTGAACT
1 ATGTGGAATTAGCATTTGTTGAACT
77189035 ATGTGGAATTAGCATTTGTTGAACT
1 ATGTGGAATTAGCATTTGTTGAACT
77189060 AT
1 AT
77189062 TAGCTAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (25 bp):
ATGTGGAATTAGCATTTGTTGAACT
Found at i:77194758 original size:463 final size:465
Alignment explanation
Indices: 77193636--77194877 Score: 2402
Period size: 464 Copynumber: 2.7 Consensus size: 465
77193626 CAATAGCTGA
* *
77193636 GCTTGTTCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACAGG
1 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
77193701 TTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
66 TTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
* *
77193766 AATCTTAAAAAAATCAAGAAGAATTGAAAAAAGTTCCATCGCTATTGAATATTTATATAACCTTA
131 AATCTTAAAAAATTCAAGAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTA
77193831 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
196 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
77193896 TACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGT
261 TACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGT
77193961 TATAATATTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATAAATAAGTTTT
326 TATAATATTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATAAATAAGTTTT
77194026 TATATTTTGGTTCAACTTAATTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATA
391 TATATTTTGGTTCAACTTAATTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATA
77194091 TATGTAGCTT
456 TATGTAGCTT
77194101 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAA-CTGACGGG
1 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
77194165 TTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
66 TTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
77194230 AATCTTAAAAAATTCAAGAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTA
131 AATCTTAAAAAATTCAAGAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTA
77194295 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
196 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
77194360 TACTA-TTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGT
261 TACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGT
*
77194424 TATAATAATTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATGAATAAG-TT
326 TATAAT-ATTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATAAATAAGTTT
77194488 TTATATTTTGGTTCAACTTAATTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCAT
390 TTATATTTTGGTTCAACTTAATTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCAT
77194553 ATATGTAGCTT
455 ATATGTAGCTT
77194564 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
1 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
77194629 TTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
66 TTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
77194694 AATCTTAAAAAATTCAA-AAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTA
131 AATCTTAAAAAATTCAAGAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTA
77194758 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
196 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
77194823 TACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGT
261 TACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGT
77194878 ATTTGTATAA
Statistics
Matches: 769, Mismatches: 5, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
463 316 0.41
464 398 0.52
465 55 0.07
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (465 bp):
GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
TTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
AATCTTAAAAAATTCAAGAAGAATTGAAAAAAGTTCTATCGCTATTGAATATTTATATAACCTTA
ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
TACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGT
TATAATATTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATAAATAAGTTTT
TATATTTTGGTTCAACTTAATTATTATTTGATTCAACTTAAGTATGAATTAATTTTATTACCATA
TATGTAGCTT
Found at i:77200682 original size:21 final size:21
Alignment explanation
Indices: 77200656--77200699 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
77200646 TCAACTTAGA
77200656 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
*
77200677 GCGGAGGCAGCAGTGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
77200698 GC
1 GC
77200700 AGAGCAGAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.18, G:0.57, T:0.02
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:77201117 original size:86 final size:85
Alignment explanation
Indices: 77201002--77201306 Score: 402
Period size: 86 Copynumber: 3.6 Consensus size: 85
77200992 TTGGGCAAAT
* * * * * *
77201002 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGT-ATAGGTCTATAGCGGTGTTTTTTAAAAAAG
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCT-GGTTTCTAGCGGTG-TTTTTATAAAAG
* *
77201066 CGCCGCTAAAAGT-ATAGGTCTA
64 CGCCGCTAAAGGTCCT-GGTCTA
77201088 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTCTAGCGGTGTTTTTATAAAAGCG
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTCTAGCGGTGTTTTTATAAAAGCG
* *
77201153 CCGCTAAAGGTCCTGGTTTC
66 CCGCTAAAGGTCCTGGTCTA
*
77201173 TAGCGGCGTCTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTCTAGCGGCGTTTTTATAAAAGC
1 TAGCGGCGT-TTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTCTAGCGGTGTTTTTATAAAAGC
* *
77201238 GCCGCTAAAGGTCCTTGTCTT
65 GCCGCTAAAGGTCCTGGTCTA
* *
77201259 TGGCGGCG-TTTTTATAAGAGCGCCGCTAAAGGTCCTGGTCTT-TAGCGG
1 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGT-TTCTAGCGG
77201307 CATTTTTAGA
Statistics
Matches: 199, Mismatches: 16, Indels: 10
0.88 0.07 0.04
Matches are distributed among these distances:
84 36 0.18
85 38 0.19
86 124 0.62
87 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (85 bp):
TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTCTAGCGGTGTTTTTATAAAAGCG
CCGCTAAAGGTCCTGGTCTA
Found at i:77201156 original size:42 final size:42
Alignment explanation
Indices: 77201002--77201319 Score: 374
Period size: 42 Copynumber: 7.5 Consensus size: 42
77200992 TTGGGCAAAT
* * * * *
77201002 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGT-ATAGGTCTA
1 TAGCGGCG-TTTTTATAAAAGCGCCGCTAAAGGTCCT-GGTTTC
* * * * * *
77201045 TAGCGGTGTTTTTTAAAAAAGCGCCGCTAAAAGT-ATAGGTCTA
1 TAGCGGCG-TTTTTATAAAAGCGCCGCTAAAGGTCCT-GGTTTC
77201088 TAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTC
1 TAGCGGCG-TTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTC
*
77201131 TAGCGGTGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTC
1 TAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTC
77201173 TAGCGGCGTCTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTC
1 TAGCGGCG--TTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTC
*
77201217 TAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTTGTCTT-
1 TAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGT-TTC
* *
77201259 TGGCGGCGTTTTTATAAGAGCGCCGCTAAAGGTCCTGGTCTT-
1 TAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGT-TTC
* *
77201301 TAGCGGCATTTTTAGAAAA
1 TAGCGGCGTTTTTATAAAA
77201320 AAACGCCGCT
Statistics
Matches: 254, Mismatches: 17, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
42 125 0.49
43 86 0.34
44 43 0.17
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTC
Found at i:77201243 original size:128 final size:127
Alignment explanation
Indices: 77201001--77201331 Score: 400
Period size: 128 Copynumber: 2.6 Consensus size: 127
77200991 ATTGGGCAAA
* * * * *
77201001 TTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGT-ATAGGTCTATAGCGGTGTTTTTTAAAAAA
1 TTAGCGGCG-TTTTTATAAAAGCGCCGCTAAAGGTCCT-GGT-TTTAGCGGCGTTTTTTAAAAAA
77201065 GCGCCGCTAAAAGTATAGGTCTATAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGT-T
63 GCGCCGCTAAAAGTATAGGTCTATAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
* *
77201129 TCTAGCGGTGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTCTAGCGGCGTCTTTTTATAAAA
1 T-TAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTT-TAGCGGCGT-TTTTTAAAAAA
* * * * *
77201194 GCGCCGCTAAAGGTCCT-GGTTTCTAGCGGCG-TTTTTATAAAAGCGCCGCTAAAGGTCCTTGTC
63 GCGCCGCTAAAAGT-ATAGGTCTATAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTC
77201257 T
127 T
* * * * *
77201258 TTGGCGGCGTTTTTATAAGAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCATTTTTAGAAAAAAA
1 TTAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGT-TTTAGCGGCGTTTTT-TAAAAAAG
77201323 CGCCGCTAA
64 CGCCGCTAA
77201332 TTTTTGTGGC
Statistics
Matches: 176, Mismatches: 19, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
127 5 0.03
128 123 0.70
129 47 0.27
130 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (127 bp):
TTAGCGGCGTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTTTTAGCGGCGTTTTTTAAAAAAGCG
CCGCTAAAAGTATAGGTCTATAGCGGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCT
Found at i:77203290 original size:11 final size:11
Alignment explanation
Indices: 77203254--77203309 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
77203244 CATGGTATGT
77203254 ATGATATGCAC
1 ATGATATGCAC
* *
77203265 ATGACATG--T
1 ATGATATGCAC
77203274 ATGATATGCAC
1 ATGATATGCAC
*
77203285 ATGATATG--T
1 ATGATATGCAC
77203294 ATGATATGCAC
1 ATGATATGCAC
77203305 ATGAT
1 ATGAT
77203310 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:77203309 original size:20 final size:20
Alignment explanation
Indices: 77203243--77203309 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
77203233 ATTTTAGTAA
*
77203243 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
77203263 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
77203283 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
77203303 ACATGAT
1 ACATGAT
77203310 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:77203635 original size:31 final size:31
Alignment explanation
Indices: 77203600--77203663 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
77203590 CGTTTATAGT
*
77203600 AAAGGCTTCAGCCTAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
* **
77203631 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
77203662 AA
1 AA
77203664 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:77206317 original size:21 final size:21
Alignment explanation
Indices: 77206290--77206350 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
77206280 TATAATGAGT
77206290 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
77206311 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
77206332 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
77206351 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:77206349 original size:10 final size:10
Alignment explanation
Indices: 77206290--77206350 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
77206280 TATAATGAGT
77206290 ATATCATAG-C
1 ATATCAT-GTC
77206300 ATATCATGTGC
1 ATATCATGT-C
* **
77206311 ATCTCATAAC
1 ATATCATGTC
77206321 ATATCATGTGC
1 ATATCATGT-C
77206332 ATATCATGTC
1 ATATCATGTC
77206342 ATATCATGT
1 ATATCATGT
77206351 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:77207117 original size:27 final size:28
Alignment explanation
Indices: 77207079--77207157 Score: 94
Period size: 27 Copynumber: 2.9 Consensus size: 28
77207069 TATTCGACAT
*
77207079 TTTA-CCATACAGGGG-TATTATGGTCAC
1 TTTACCCATACAGGGGCT-TTACGGTCAC
77207106 TTTACCCA-ACAGGGGCTTTACGGTCAC
1 TTTACCCATACAGGGGCTTTACGGTCAC
* *
77207133 TTTA-CCTTGCAGGGGCTTTACGGTC
1 TTTACCCATACAGGGGCTTTACGGTC
77207158 TTTTTACCTA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.04
27 40 0.87
28 4 0.09
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
TTTACCCATACAGGGGCTTTACGGTCAC
Found at i:77207174 original size:27 final size:27
Alignment explanation
Indices: 77207100--77207166 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
77207090 GGGGTATTAT
***
77207100 GGTCACTTTACCCAACAGGGGCTTTAC
1 GGTCACTTTACCTTGCAGGGGCTTTAC
77207127 GGTCACTTTACCTTGCAGGGGCTTTAC
1 GGTCACTTTACCTTGCAGGGGCTTTAC
**
77207154 GGTCTTTTTACCT
1 GGTCACTTTACCT
77207167 ATTAGGGGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.16, C:0.27, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTCACTTTACCTTGCAGGGGCTTTAC
Found at i:77207249 original size:27 final size:27
Alignment explanation
Indices: 77207219--77207326 Score: 87
Period size: 27 Copynumber: 3.9 Consensus size: 27
77207209 GTAAATCTAC
*
77207219 AAACCAAGGGTATTTAAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTGT
*
77207246 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTT-TAGTAATTTTGT
* *
77207272 AGAAAGTCAAGCGTATTTCT-GTAATTTTGT
1 --AAA-CCAAGGGTATTT-TAGTAATTTTGT
* * *
77207302 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTTAGTAATTTT
77207327 ACAAATTGAG
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
26 2 0.03
27 39 0.58
28 7 0.10
29 18 0.27
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTGT
Found at i:77207324 original size:56 final size:55
Alignment explanation
Indices: 77207216--77207385 Score: 157
Period size: 54 Copynumber: 3.1 Consensus size: 55
77207206 TTGGTAAATC
* * * * * *
77207216 TACAAACCAAGGGTATTTAAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGCGTATTTCAGTAATTTTGTAAAACAGTGGTATTT-TGGTAATTTT
* * * *
77207271 TAGAAAGTCAAGCGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGCGTATTTCAGTAATTTTGTAAAACAGTGGTATTTTGGTAATTTT
** * ***
77207326 TACAAATTGAGGGTATTTCAGTAATTTCACAAAACAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGCGTATTTCAGTAATTTTGTAAAACAGTGGTATTTTGGTAATTTT
77207380 TACAAA
1 TACAAA
77207386 CTAGGGGTAT
Statistics
Matches: 94, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
54 45 0.48
55 14 0.15
56 35 0.37
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.39
Consensus pattern (55 bp):
TACAAATCAAGCGTATTTCAGTAATTTTGTAAAACAGTGGTATTTTGGTAATTTT
Found at i:77207332 original size:27 final size:27
Alignment explanation
Indices: 77207284--77207447 Score: 131
Period size: 27 Copynumber: 6.1 Consensus size: 27
77207274 AAAGTCAAGC
**
77207284 GTATTTCT-GTAATTTTGTAAATCAGGG
1 GTATTT-TGGTAATTTTACAAATCAGGG
*
77207311 GTATTTTGGTAATTTTACAAAT-TGAGG
1 GTATTTTGGTAATTTTACAAATCAG-GG
** * * *
77207338 GTATTTCAGTAATTTCACAAAACAGTG
1 GTATTTTGGTAATTTTACAAATCAGGG
77207365 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTGGTAATTTTACAAATC-AGGG
* **
77207392 GTATTTTGGTAATTCTAC-CCTACAGGG
1 GTATTTTGGTAATTTTACAAAT-CAGGG
* * *
77207419 GTATTTTAGTAATTTCAC-AATCAAGG
1 GTATTTTGGTAATTTTACAAATCAGGG
77207445 GTA
1 GTA
77207448 AAATGATAAT
Statistics
Matches: 109, Mismatches: 22, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
26 10 0.09
27 97 0.89
28 2 0.02
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAATCAGGG
Found at i:77207422 original size:54 final size:54
Alignment explanation
Indices: 77207306--77207438 Score: 153
Period size: 54 Copynumber: 2.5 Consensus size: 54
77207296 TTTTGTAAAT
*
77207306 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAAA
1 CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCAGTAATTTCACAAAA
* ** ***
77207360 CAGTGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAA-TTCTACCCTA
1 CAGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTCAGTAATTTC-ACAAAA
* *
77207414 CAGGGGTATTTTAGTAATTTCACAA
1 CAGGGGTATTTTGGTAATTTTACAA
77207439 TCAAGGGTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 3 0.04
54 62 0.93
55 2 0.03
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCAGTAATTTCACAAAA
Found at i:77207593 original size:27 final size:27
Alignment explanation
Indices: 77207437--77207582 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
77207427 GTAATTTCAC
* * * *
77207437 AATCAAGGGTAAAATGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
**
77207464 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
77207491 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
77207518 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
*
77207545 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
77207572 AATCGAGGGTA
1 AATCGAGGGTA
77207583 CTTTGGTAAT
Statistics
Matches: 105, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:77207593 original size:54 final size:54
Alignment explanation
Indices: 77207442--77207582 Score: 246
Period size: 54 Copynumber: 2.6 Consensus size: 54
77207432 TTCACAATCA
* *
77207442 AGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATTG
*
77207496 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATTG
*
77207550 AGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTA
77207583 CTTTGGTAAT
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.28
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATTG
Found at i:77207605 original size:81 final size:80
Alignment explanation
Indices: 77207417--77207605 Score: 202
Period size: 81 Copynumber: 2.3 Consensus size: 80
77207407 TACCCTACAG
* * * * * * *
77207417 GGGTATTTTAGTAATTTCACAATCAAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAATAGT
1 GGGTAATTTGGTAATTTTACAATCGAGGGTAAAAAGATAATTCTATAAATCGAGGGTAAAACAGT
*
77207482 AATTCTATAAATTGA
66 AATTCTATAAATCGA
*** *
77207497 GGGTAAAACGGTAATTCTGTA-AATCGAGGGTAAAACAG-TAATTCTATAAATTGAGGGTAAAAC
1 GGGTAATTTGGTAATT-T-TACAATCGAGGGTAAAA-AGATAATTCTATAAATCGAGGGTAAAAC
*
77207560 GGTAATTCTATAAATCGA
63 AGTAATTCTATAAATCGA
*
77207578 GGGTACTTTGGTAATTTTACAAGTCGAG
1 GGGTAATTTGGTAATTTTACAA-TCGAG
77207606 CGCATTTCAG
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
79 2 0.02
80 14 0.16
81 69 0.79
82 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (80 bp):
GGGTAATTTGGTAATTTTACAATCGAGGGTAAAAAGATAATTCTATAAATCGAGGGTAAAACAGT
AATTCTATAAATCGA
Found at i:77209986 original size:21 final size:21
Alignment explanation
Indices: 77209959--77210019 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
77209949 TATAATGAGT
77209959 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
77209980 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
77210001 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
77210020 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:77210018 original size:10 final size:10
Alignment explanation
Indices: 77209959--77210019 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
77209949 TATAATGAGT
77209959 ATATCATAG-C
1 ATATCAT-GTC
77209969 ATATCATGTGC
1 ATATCATGT-C
* **
77209980 ATCTCATAAC
1 ATATCATGTC
77209990 ATATCATGTGC
1 ATATCATGT-C
77210001 ATATCATGTC
1 ATATCATGTC
77210011 ATATCATGT
1 ATATCATGT
77210020 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:77210088 original size:25 final size:25
Alignment explanation
Indices: 77210056--77210104 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
77210046 ATAATTACAC
* * *
77210056 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
77210081 CCTAGGGGCAAAATAGTCATTTTT
1 CCTAGGGGCAAAATAGTCATTTTT
77210105 CATATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:77210777 original size:27 final size:28
Alignment explanation
Indices: 77210739--77210817 Score: 94
Period size: 27 Copynumber: 2.9 Consensus size: 28
77210729 TATTCGACAT
*
77210739 TTTA-CCATACAGGGG-TATTATGGTCAC
1 TTTACCCATACAGGGGCT-TTACGGTCAC
77210766 TTTACCCA-ACAGGGGCTTTACGGTCAC
1 TTTACCCATACAGGGGCTTTACGGTCAC
* *
77210793 TTTA-CCTTGCAGGGGCTTTACGGTC
1 TTTACCCATACAGGGGCTTTACGGTC
77210818 TTTTTACCTA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.04
27 40 0.87
28 4 0.09
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
TTTACCCATACAGGGGCTTTACGGTCAC
Found at i:77210834 original size:27 final size:27
Alignment explanation
Indices: 77210760--77210826 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
77210750 GGGGTATTAT
***
77210760 GGTCACTTTACCCAACAGGGGCTTTAC
1 GGTCACTTTACCTTGCAGGGGCTTTAC
77210787 GGTCACTTTACCTTGCAGGGGCTTTAC
1 GGTCACTTTACCTTGCAGGGGCTTTAC
**
77210814 GGTCTTTTTACCT
1 GGTCACTTTACCT
77210827 ATTAGGGGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.16, C:0.27, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTCACTTTACCTTGCAGGGGCTTTAC
Found at i:77210909 original size:27 final size:27
Alignment explanation
Indices: 77210879--77211012 Score: 78
Period size: 27 Copynumber: 4.9 Consensus size: 27
77210869 GTAAATCTAC
77210879 AAACTAAGGGTATTTCAGTAATTTTGT
1 AAACTAAGGGTATTTCAGTAATTTTGT
* *
77210906 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACTAAGGGTATTTC-AGTAATTTTGT
* *
77210932 AGAAAGTCAAGCGTATTTCTA-TAATTTTGT
1 --AAACT-AAGGGTATTTC-AGTAATTTTGT
* * ** **
77210962 AAA-TCAGGGGTGTTTTGGTAATTTTAC
1 AAACT-AAGGGTATTTCAGTAATTTTGT
* *
77210989 AAATTGAGGGTATTTCAGTAATTT
1 AAACTAAGGGTATTTCAGTAATTT
77211013 CACAAACCAG
Statistics
Matches: 82, Mismatches: 18, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
26 1 0.01
27 54 0.66
28 8 0.10
29 18 0.22
30 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
AAACTAAGGGTATTTCAGTAATTTTGT
Found at i:77211058 original size:27 final size:27
Alignment explanation
Indices: 77210967--77211093 Score: 105
Period size: 27 Copynumber: 4.7 Consensus size: 27
77210957 TTTGTAAATC
* *
77210967 AGGGGTGTTTTGGTAATTTTACA-AAT
1 AGGGGTATTTTGGTAATTTTACATACT
* ** * * *
77210993 TGAGGGTATTTCAGTAATTTCACAAACC
1 AG-GGGTATTTTGGTAATTTTACATACT
*
77211021 AGTGGTATTTTGGTAATTTTACATACT
1 AGGGGTATTTTGGTAATTTTACATACT
* * *
77211048 AGGGGTATTTTGGTAAGTCTACCCTAC-
1 AGGGGTATTTTGGTAATTTTA-CATACT
*
77211075 AGGGGTATTTTAGTAATTT
1 AGGGGTATTTTGGTAATTT
77211094 CACAATCGAG
Statistics
Matches: 77, Mismatches: 21, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
26 1 0.01
27 70 0.91
28 6 0.08
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACATACT
Found at i:77211105 original size:27 final size:26
Alignment explanation
Indices: 77210963--77211105 Score: 85
Period size: 27 Copynumber: 5.3 Consensus size: 26
77210953 TAATTTTGTA
* *
77210963 AATCAGGGGTGTTTTGGTAATTTTAC
1 AATCAGGGGTATTTTGGTAATTTCAC
* **
77210989 AAAT-TGAGGGTATTTCAGTAATTTCAC
1 -AATCAG-GGGTATTTTGGTAATTTCAC
* * *
77211016 AAACCAGTGGTATTTTGGTAATTTTAC
1 -AATCAGGGGTATTTTGGTAATTTCAC
*
77211043 -ATACTAGGGGTATTTTGGTAA-GTCTAC
1 AAT-C-AGGGGTATTTTGGTAATTTC-AC
** *
77211070 CCTACAGGGGTATTTTAGTAATTTCAC
1 AAT-CAGGGGTATTTTGGTAATTTCAC
77211097 AATCGAGGG
1 AATC-AGGG
77211106 TAAAACAATA
Statistics
Matches: 88, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
25 1 0.01
26 4 0.05
27 77 0.88
28 6 0.07
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (26 bp):
AATCAGGGGTATTTTGGTAATTTCAC
Found at i:77211117 original size:26 final size:25
Alignment explanation
Indices: 77211088--77211164 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 25
77211078 GGTATTTTAG
77211088 TAATTTCACAATCGAGGGTAAAACAA
1 TAATTTCA-AATCGAGGGTAAAACAA
* *
77211114 TAATTCTGTAAATCGAGGGTAAAACAG
1 TAATT-T-CAAATCGAGGGTAAAACAA
*
77211141 TAATTCTATAAATCGAGGGTAAAA
1 TAATT-T-CAAATCGAGGGTAAAA
77211165 TGGTAATTCT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 5 0.11
27 40 0.87
28 1 0.02
ACGTcount: A:0.44, C:0.12, G:0.18, T:0.26
Consensus pattern (25 bp):
TAATTTCAAATCGAGGGTAAAACAA
Found at i:77211127 original size:27 final size:27
Alignment explanation
Indices: 77211097--77211242 Score: 195
Period size: 27 Copynumber: 5.4 Consensus size: 27
77211087 GTAATTTCAC
* *
77211097 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
77211124 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
** *
77211151 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
77211178 AATCGATGGTAAAACAGTACTTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
77211205 AATCGAAGGTAAAAC-GATTATTCTATA
1 AATCGAGGGTAAAACAG-TAATTCTATA
77211232 AATCGAGGGTA
1 AATCGAGGGTA
77211243 CTTTGGTAAT
Statistics
Matches: 104, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 103 0.99
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:77211162 original size:54 final size:54
Alignment explanation
Indices: 77211097--77211242 Score: 220
Period size: 54 Copynumber: 2.7 Consensus size: 54
77211087 GTAATTTCAC
*
77211097 AATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
* * * *
77211151 AATCGAGGGTAAAATGGTAATTCTGTAAATCGATGGTAAAACAGTACTTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
* * *
77211205 AATCGAAGGTAAAACGATTATTCTATAAATCGAGGGTA
1 AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTA
77211243 CTTTGGTAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (54 bp):
AATCGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATA
Found at i:77215444 original size:25 final size:25
Alignment explanation
Indices: 77215424--77215485 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
77215414 TGAGCTTAAT
*
77215424 GTTATTCAGCTTTGAGAAGCTTACC
1 GTTATTCAGCTCTGAGAAGCTTACC
* * *
77215449 ATTATTCACCTCTGAGGAGCTTACC
1 GTTATTCAGCTCTGAGAAGCTTACC
77215474 GTTATTCAGCTC
1 GTTATTCAGCTC
77215486 AGAAGTGCTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (25 bp):
GTTATTCAGCTCTGAGAAGCTTACC
Found at i:77215495 original size:25 final size:25
Alignment explanation
Indices: 77215441--77215496 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
77215431 AGCTTTGAGA
* *
77215441 AGCTTACCATTATTCACCTCTGAGG
1 AGCTTACCATTATTCACCTCAGAAG
* *
77215466 AGCTTACCGTTATTCAGCTCAGAAG
1 AGCTTACCATTATTCACCTCAGAAG
*
77215491 TGCTTA
1 AGCTTA
77215497 TTGTTTATAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (25 bp):
AGCTTACCATTATTCACCTCAGAAG
Found at i:77220688 original size:22 final size:23
Alignment explanation
Indices: 77220663--77220708 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
77220653 CAACCAAATC
77220663 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
77220685 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
77220708 A
1 A
77220709 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:77220714 original size:23 final size:23
Alignment explanation
Indices: 77220670--77220714 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77220660 ATCAATTCAA
*
77220670 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
77220693 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
77220715 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:77222917 original size:15 final size:15
Alignment explanation
Indices: 77222885--77222919 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
77222875 GCTGTGTGTA
*
77222885 ACACATGGCCTGGCG
1 ACACATGGCCTAGCG
*
77222900 ACACATGGCCTAGTG
1 ACACATGGCCTAGCG
77222915 ACACA
1 ACACA
77222920 GTTGTATGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.31, G:0.26, T:0.14
Consensus pattern (15 bp):
ACACATGGCCTAGCG
Found at i:77224380 original size:19 final size:19
Alignment explanation
Indices: 77224356--77224414 Score: 109
Period size: 19 Copynumber: 3.1 Consensus size: 19
77224346 CAACATGGCC
*
77224356 AGTCACATGCCTGTATGTG
1 AGTCACATGCCCGTATGTG
77224375 AGTCACATGCCCGTATGTG
1 AGTCACATGCCCGTATGTG
77224394 AGTCACATGCCCGTATGTG
1 AGTCACATGCCCGTATGTG
77224413 AG
1 AG
77224415 ACCATGTGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
19 39 1.00
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.27
Consensus pattern (19 bp):
AGTCACATGCCCGTATGTG
Found at i:77237275 original size:27 final size:27
Alignment explanation
Indices: 77237239--77237347 Score: 168
Period size: 27 Copynumber: 4.1 Consensus size: 27
77237229 GTCGTTAAGA
*
77237239 CCCCGATTTGTAAAATTACTGAAATAC
1 CCCCAATTTGTAAAATTACTGAAATAC
77237266 CCCCAATTTGTAAAATTACTGAAATA-
1 CCCCAATTTGTAAAATTACTGAAATAC
*
77237292 CCCCAGA-TTGTAAAATTACTCAAATAC
1 CCCCA-ATTTGTAAAATTACTGAAATAC
*
77237319 CCCCAGTTTGTAAAATTACTGAAATAC
1 CCCCAATTTGTAAAATTACTGAAATAC
77237346 CC
1 CC
77237348 TTGTAGTGTA
Statistics
Matches: 75, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
26 23 0.31
27 52 0.69
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (27 bp):
CCCCAATTTGTAAAATTACTGAAATAC
Found at i:77237318 original size:53 final size:53
Alignment explanation
Indices: 77237238--77237347 Score: 186
Period size: 53 Copynumber: 2.1 Consensus size: 53
77237228 GGTCGTTAAG
*
77237238 ACCCCGATTTGTAAAATTACTGAAATACCCCCAATTTGTAAAATTACTGAAAT
1 ACCCCGATTTGTAAAATTACTCAAATACCCCCAATTTGTAAAATTACTGAAAT
*
77237291 ACCCCAGA-TTGTAAAATTACTCAAATACCCCCAGTTTGTAAAATTACTGAAAT
1 ACCCC-GATTTGTAAAATTACTCAAATACCCCCAATTTGTAAAATTACTGAAAT
77237344 ACCC
1 ACCC
77237348 TTGTAGTGTA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
53 52 0.96
54 2 0.04
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (53 bp):
ACCCCGATTTGTAAAATTACTCAAATACCCCCAATTTGTAAAATTACTGAAAT
Found at i:77237357 original size:27 final size:27
Alignment explanation
Indices: 77237246--77237373 Score: 163
Period size: 27 Copynumber: 4.8 Consensus size: 27
77237236 AGACCCCGAT
*
77237246 TTGTAAAATTACTGAAATACCCCCAAT-
1 TTGTAAAATTACTGAAATA-CCCCAGTA
77237273 TTGTAAAATTACTGAAATACCCCAG-A
1 TTGTAAAATTACTGAAATACCCCAGTA
*
77237299 TTGTAAAATTACTCAAATACCCCCAGT-
1 TTGTAAAATTACTGAAATA-CCCCAGTA
**
77237326 TTGTAAAATTACTGAAATACCCTTGTA
1 TTGTAAAATTACTGAAATACCCCAGTA
* *
77237353 GTGTAAAATTAATGAAATACC
1 TTGTAAAATTACTGAAATACC
77237374 TATATAGGGT
Statistics
Matches: 90, Mismatches: 7, Indels: 8
0.86 0.07 0.08
Matches are distributed among these distances:
26 28 0.31
27 62 0.69
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCCAGTA
Found at i:77237385 original size:27 final size:27
Alignment explanation
Indices: 77237328--77237388 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
77237318 CCCCCAGTTT
* * *
77237328 GTAAAATTACTGAAATACCCTTGTAGT
1 GTAAAATTAATGAAATACCCTTATAGG
77237355 GTAAAATTAATGAAATA-CCTATATAGG
1 GTAAAATTAATGAAATACCCT-TATAGG
77237382 GTAAAAT
1 GTAAAAT
77237389 GACTATTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 3 0.10
27 27 0.90
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (27 bp):
GTAAAATTAATGAAATACCCTTATAGG
Found at i:77250119 original size:50 final size:49
Alignment explanation
Indices: 77249996--77250185 Score: 229
Period size: 50 Copynumber: 3.8 Consensus size: 49
77249986 CTGGTACGCA
* * * *
77249996 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACTATCCAGTACAAG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCGA-TACACG
*
77250045 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATC-GATACACG
* * * * * *
77250095 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CTATC-GATACACG
*
77250146 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACTAT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTAT
77250186 AGCTCATTCG
Statistics
Matches: 121, Mismatches: 17, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
49 31 0.26
50 48 0.40
51 42 0.35
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACTATCGATACACG
Found at i:77250176 original size:101 final size:99
Alignment explanation
Indices: 77249996--77250179 Score: 271
Period size: 101 Copynumber: 1.8 Consensus size: 99
77249986 CTGGTACGCA
*
77249996 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACTATCCAGTACAAGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAACTATCCAGTACAAGTAGTAGCCTGCACTTA
77250061 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACCATCTGATACACG
* * * ** *
77250095 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA-TAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-CTATCCAGTAC-AAGTAGTAGCCTGCAC
77250159 TTAGTACTACACACGTGACCT
63 TTAGTACTACACACGTGACCT
77250180 CACTATAGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.56
102 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAACTATCCAGTACAAGTAGTAGCCTGCACTTA
GTACTACACACGTGACCTAACCATCTGATACACG
Found at i:77250465 original size:27 final size:27
Alignment explanation
Indices: 77250425--77250478 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
77250415 GCATACAACC
* *
77250425 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
77250452 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
77250479 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:77253892 original size:43 final size:44
Alignment explanation
Indices: 77253821--77253941 Score: 133
Period size: 43 Copynumber: 2.8 Consensus size: 44
77253811 ACAATGTCAA
*** *
77253821 TGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCC-AC
1 TGTCCCAGACGTGGTCTTACACAAAATCAAATATCGATACCAAC
** *
77253864 TGTCCCAGACAAGGTCTTACACAAAATCAAGTA-CGATACCAAC
1 TGTCCCAGACGTGGTCTTACACAAAATCAAATATCGATACCAAC
*
77253907 -GTCCCAGACGTGGTCTTACACGAAAA-CACATATCG
1 TGTCCCAGACGTGGTCTTACAC-AAAATCAAATATCG
77253942 GATCCTATGT
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 29 0.45
43 35 0.55
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.22
Consensus pattern (44 bp):
TGTCCCAGACGTGGTCTTACACAAAATCAAATATCGATACCAAC
Found at i:77254093 original size:27 final size:29
Alignment explanation
Indices: 77254048--77254102 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
77254038 ATTTTCAACA
*
77254048 CATATAATCATTCAAAATT-A-TTCAAAG
1 CATATAATCAATCAAAATTCAGTTCAAAG
77254075 CATATAATCAAT-AATAATTCAGTTCAAA
1 CATATAATCAATCAA-AATTCAGTTCAAA
77254103 ATACATTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 2 0.08
27 15 0.62
28 1 0.04
29 6 0.25
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.33
Consensus pattern (29 bp):
CATATAATCAATCAAAATTCAGTTCAAAG
Found at i:77265797 original size:27 final size:27
Alignment explanation
Indices: 77265761--77265873 Score: 165
Period size: 27 Copynumber: 4.2 Consensus size: 27
77265751 ACTTTTTAAA
*
77265761 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
77265788 AATTA-CTGAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCCTGTAGGGTAG
* *
77265815 AATTATCGAAATACCCTTGTAGAGTAG
1 AATTATCGAAATACCCCTGTAGGGTAG
* *
77265842 AAATATCGAAATACCCCTGTAGGGTAA
1 AATTATCGAAATACCCCTGTAGGGTAG
77265869 AATTA
1 AATTA
77265874 CCATTTTTCC
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
27 75 0.99
28 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTATCGAAATACCCCTGTAGGGTAG
Found at i:77266278 original size:20 final size:20
Alignment explanation
Indices: 77266238--77266278 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
77266228 TATGTGACGT
*
77266238 TATTGTGGGCTTCATATCGA
1 TATTGTGGGCTTCATACCGA
*
77266258 TATTGTGGGCTTCGTACCGA
1 TATTGTGGGCTTCATACCGA
77266278 T
1 T
77266279 TATAGACCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.27, T:0.39
Consensus pattern (20 bp):
TATTGTGGGCTTCATACCGA
Found at i:77266324 original size:98 final size:98
Alignment explanation
Indices: 77266193--77266398 Score: 279
Period size: 98 Copynumber: 2.1 Consensus size: 98
77266183 CTATGGACCG
* * *
77266193 ATCGATGGCTGAGTGTCGATCCTGTTACCGAAGGCTATGTGACGTTATTGTGGGCTTCATATCGA
1 ATCGATGGCTGAGTGTCGATCATGCTACCGAAGGCTATGTGACATTATTGTGGGCTTCATATCGA
* *
77266258 TATTGTGGGCTTCGTACCGATTATAGACCCGTT
66 TATTGTGGGCTTCATACCGATTATAAACCCGTT
* * * ** *
77266291 ATCGATGGTTGAGTG-CTGATCATGCTACCGAAGGTTGTGTTCCATTATTGTGGGCTTCGTATCG
1 ATCGATGGCTGAGTGTC-GATCATGCTACCGAAGGCTATGTGACATTATTGTGGGCTTCATATCG
* *
77266355 ATATTGTGGGCTTTATGCCGATTATAAACCCGTT
65 ATATTGTGGGCTTCATACCGATTATAAACCCGTT
77266389 ATCGATGGCT
1 ATCGATGGCT
77266399 TTGTGCCACG
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
97 1 0.01
98 92 0.99
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.35
Consensus pattern (98 bp):
ATCGATGGCTGAGTGTCGATCATGCTACCGAAGGCTATGTGACATTATTGTGGGCTTCATATCGA
TATTGTGGGCTTCATACCGATTATAAACCCGTT
Found at i:77266603 original size:6 final size:6
Alignment explanation
Indices: 77266594--77266675 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
77266584 TCACATTCAC
* *
77266594 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTG ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG
* *
77266644 ACTCTG ATTCTG ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
77266676 AATGTTTCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
5 4 0.07
6 47 0.78
7 7 0.12
8 2 0.03
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (6 bp):
ATTCTG
Found at i:77266628 original size:25 final size:25
Alignment explanation
Indices: 77266594--77266655 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
77266584 TCACATTCAC
*
77266594 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTCACCTGATACTG
*
77266619 ATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGTCACCTGATACTG
*
77266644 ACTCTGATTCTG
1 ATTCTGATTCTG
77266656 ATTTTGATTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.44
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTGATACTG
Found at i:77285084 original size:24 final size:24
Alignment explanation
Indices: 77285052--77285112 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
77285042 AAAATCCAAT
* * *
77285052 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAATA-A
77285076 GCACTATGTGTGCGAGTGTAATAA
1 GCACTATGTGTGCGAGTGTAATAA
77285100 GCACTATGTGTGC
1 GCACTATGTGTGC
77285113 AAATTCGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 27 0.82
25 6 0.18
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATAA
Found at i:77289648 original size:141 final size:142
Alignment explanation
Indices: 77289382--77289669 Score: 434
Period size: 141 Copynumber: 2.0 Consensus size: 142
77289372 GAAATGATAG
* *
77289382 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATACGTGATAAGGCCTAATGGCCG
* * * * *
77289447 ATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
65 ATGTGATGAATGTGAAAGTGTATATACGTGACAAGGCCGAATGGCCAACGTAATGAATGTGAAAG
* *
77289512 TGTATATACGTGA
130 TGCATAAACGTGA
77289525 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATACGTGATAAGGCCTAATGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCCTAATGGCCGA
* * * *
77289589 TGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTAATGGATGTGGAAGT
66 TGTGATGAATGTGAAAGTGTATATACGTGACAAGGCCGAATGGCCAACGTAATGAATGTGAAAGT
*
77289654 GCATAAATGTGA
131 GCATAAACGTGA
77289666 TAAG
1 TAAG
77289670 TCCCGAAAGG
Statistics
Matches: 131, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
141 95 0.73
143 36 0.27
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (142 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATACGTGATAAGGCCTAATGGCCGA
TGTGATGAATGTGAAAGTGTATATACGTGACAAGGCCGAATGGCCAACGTAATGAATGTGAAAGT
GCATAAACGTGA
Found at i:77289654 original size:47 final size:47
Alignment explanation
Indices: 77289382--77289625 Score: 434
Period size: 47 Copynumber: 5.1 Consensus size: 47
77289372 GAAATGATAG
*
77289382 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGA
*
77289431 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
77289478 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
77289525 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
*
77289572 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
*
77289619 CAAGGCC
1 TAAGGCC
77289626 GAGTGGCCAA
Statistics
Matches: 190, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
47 155 0.82
49 35 0.18
ACGTcount: A:0.32, C:0.11, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
Found at i:77289844 original size:37 final size:37
Alignment explanation
Indices: 77289788--77289866 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
77289778 CCGAGCTCTA
* * *
77289788 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
77289825 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77289862 AAGAC
1 AAGAC
77289867 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77296525 original size:24 final size:24
Alignment explanation
Indices: 77296493--77296553 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
77296483 AAAATCCAAT
* * *
77296493 GCACTATGTGTGCG-GTTTACTATG
1 GCACTATGTGTGCGAGTGTAATA-A
77296517 GCACTATGTGTGCGAGTGTAATAA
1 GCACTATGTGTGCGAGTGTAATAA
77296541 GCACTATGTGTGC
1 GCACTATGTGTGC
77296554 AGATTCGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 27 0.82
25 6 0.18
ACGTcount: A:0.21, C:0.16, G:0.30, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGAGTGTAATAA
Found at i:77302896 original size:28 final size:28
Alignment explanation
Indices: 77302856--77303009 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
77302846 TAAATTGTAC
77302856 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
77302884 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
77302912 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77302940 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77302968 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77302995 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77303010 GACTTAATAT
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 24 0.19
28 100 0.81
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:77302922 original size:56 final size:56
Alignment explanation
Indices: 77302831--77303009 Score: 279
Period size: 56 Copynumber: 3.2 Consensus size: 56
77302821 GAGATTGGCG
* * * *
77302831 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
77302888 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
77302944 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
77302999 CTGAGTGTGCG
1 CTAAGTGTGCG
77303010 GACTTAATAT
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
55 23 0.20
56 76 0.67
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:77312913 original size:27 final size:27
Alignment explanation
Indices: 77312874--77312951 Score: 111
Period size: 27 Copynumber: 2.9 Consensus size: 27
77312864 CTCATATCTG
* * *
77312874 TAGGCTAGTATTACTAAAATACCCCTT
1 TAGGGTAGAATTACTAAAATACCCCTA
*
77312901 TAGGGTAGAATTACTAAAATACACCTA
1 TAGGGTAGAATTACTAAAATACCCCTA
*
77312928 TAGGGTAGAATTACTGAAATACCC
1 TAGGGTAGAATTACTAAAATACCC
77312952 TTGGTTTACA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (27 bp):
TAGGGTAGAATTACTAAAATACCCCTA
Found at i:77312982 original size:26 final size:27
Alignment explanation
Indices: 77312936--77313031 Score: 106
Period size: 26 Copynumber: 3.6 Consensus size: 27
77312926 TATAGGGTAG
*
77312936 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCATGGTTTACAA
77312963 AATTACTG-AATACCCATGGTTTACAA
1 AATTACTGAAATACCCATGGTTTACAA
** * *
77312989 AATTACAAAAATA-CCATCGATTAGCAA
1 AATTACTGAAATACCCATGGTTTA-CAA
**
77313016 AATTACCAAAATACCC
1 AATTACTGAAATACCC
77313032 CTAGTTTGTA
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
26 31 0.52
27 27 0.45
28 2 0.03
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCATGGTTTACAA
Found at i:77313105 original size:54 final size:54
Alignment explanation
Indices: 77312987--77313276 Score: 207
Period size: 54 Copynumber: 5.4 Consensus size: 54
77312977 CATGGTTTAC
* * * * * * * * *
77312987 AAAATTACAAAAATACCATCGATTAGCAAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTATCGAAATA-CCTTGACTTTGT
* * *
77313041 -AAATTACCAAAATACCCTTTATTTGTGAAATTATTGAAATACCTTTGA-TTTGT
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTATCGAAATACC-TTGACTTTGT
* *
77313094 AAAATTACCAAAATACCCTTGATTTGGAAAATTATCGAAATACCGTTGACTTAG-
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTATCGAAATACC-TTGACTTTGT
* * * * ** **
77313148 AAAATTA-TAGAAATACCCCTAATTTATAAAATTA-CAGAAATACCCAGACTTTCA
1 AAAATTACCA-AAATACCCTTGATTTGTAAAATTATC-GAAATACCTTGACTTTGT
* * * * *
77313202 AAAATTACAAAAATACCATTGGTTTGCAAAATTATCGAAATACCCTTG-GTTTGT
1 AAAATTACCAAAATACCCTTGATTTGTAAAATTATCGAAATA-CCTTGACTTTGT
* * *
77313256 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
77313277 TAGGGTGAAA
Statistics
Matches: 183, Mismatches: 43, Indels: 20
0.74 0.17 0.08
Matches are distributed among these distances:
52 2 0.01
53 44 0.24
54 129 0.70
55 8 0.04
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGATTTGTAAAATTATCGAAATACCTTGACTTTGT
Found at i:77313161 original size:81 final size:82
Alignment explanation
Indices: 77313068--77313276 Score: 203
Period size: 81 Copynumber: 2.6 Consensus size: 82
77313058 TTTATTTGTG
* * ** *
77313068 AAATTATTGAAATACCTTTGATTTGTAAAATTACCAAAATACCCTTGA-TTTGGAAAATTATC-G
1 AAATTATAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTTGACTTTCAAAAATTA-CAA
*
77313131 AAATACCGTTGACTTAG-A
65 AAATACCATTG-CTTAGCA
* * * *
77313149 AAATTATAGAAATACCCCTAATTTATAAAATTA-CAGAAATACCC-AGACTTTCAAAAATTACAA
1 AAATTATAGAAATACCCTTGATTTGTAAAATTACCA-AAATACCCTTGACTTTCAAAAATTACAA
* *
77313212 AAATACCATTGGTTTGCA
65 AAATACCATTGCTTAGCA
* * * * *
77313230 AAATTATCGAAATACCCTTGGTTTGTAGATTTACCAAAACACCCTTG
1 AAATTATAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTTG
77313277 TAGGGTGAAA
Statistics
Matches: 101, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
80 8 0.08
81 90 0.89
82 3 0.03
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.32
Consensus pattern (82 bp):
AAATTATAGAAATACCCTTGATTTGTAAAATTACCAAAATACCCTTGACTTTCAAAAATTACAAA
AATACCATTGCTTAGCA
Found at i:77313254 original size:27 final size:26
Alignment explanation
Indices: 77312936--77313254 Score: 155
Period size: 27 Copynumber: 11.9 Consensus size: 26
77312926 TATAGGGTAG
* *
77312936 AATTACTGAAATACCCTTGGTTTACAA
1 AATTAC-GAAATACCCTTGATTTGCAA
* * *
77312963 AATTACTG-AATACCCATGGTTTACAA
1 AATTAC-GAAATACCCTTGATTTGCAA
* * * *
77312989 AATTACAAAAATACCATCGATTAGCAA
1 AATTAC-GAAATACCCTTGATTTGCAA
* * *
77313016 AATTACCAAAATACCCCT-AGTTTG-TA
1 AATTA-CGAAATACCCTTGA-TTTGCAA
* * **
77313042 AATTACCAAAATACCCTTTATTTGTGA
1 AATTA-CGAAATACCCTTGATTTGCAA
* * *
77313069 AATTATTGAAATACCTTTGATTTGTAA
1 AATTA-CGAAATACCCTTGATTTGCAA
* *
77313096 AATTACCAAAATACCCTTGATTTGGAA
1 AATTA-CGAAATACCCTTGATTTGCAA
* *
77313123 AATTATCGAAATACCGTTGACTTAG-AA
1 AATTA-CGAAATACCCTTGA-TTTGCAA
* * * **
77313150 AATTATAGAAATACCCCTAATTTATAA
1 AATTA-CGAAATACCCTTGATTTGCAA
*
77313177 AATTACAGAAATACCC-AGACTTT-CAAA
1 AATTAC-GAAATACCCTTGA-TTTGC-AA
* * *
77313204 AATTACAAAAATACCATTGGTTTGCAA
1 AATTAC-GAAATACCCTTGATTTGCAA
*
77313231 AATTATCGAAATACCCTTGGTTTG
1 AATTA-CGAAATACCCTTGATTTG
77313255 TAGATTTACC
Statistics
Matches: 232, Mismatches: 47, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
26 49 0.21
27 176 0.76
28 7 0.03
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (26 bp):
AATTACGAAATACCCTTGATTTGCAA
Found at i:77313715 original size:22 final size:21
Alignment explanation
Indices: 77313666--77313727 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
77313656 AATTATTCTA
* *
77313666 ATTATGGCTTTGCGCCAACTT
1 ATTATGGCTTTGTGCCAACTG
*
77313687 ACATATGGCTTTGTGCCAACCTG
1 A-TTATGGCTTTGTGCCAA-CTG
*
77313710 ATTATGGCTGTGTGCCAA
1 ATTATGGCTTTGTGCCAA
77313728 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
21 1 0.03
22 30 0.88
23 3 0.09
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (21 bp):
ATTATGGCTTTGTGCCAACTG
Found at i:77313957 original size:22 final size:22
Alignment explanation
Indices: 77313929--77313975 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
77313919 TTTGCTGCGA
* *
77313929 TGTTTACGGCTATGTATTGTCC
1 TGTTTACGGCTATGTACTATCC
*
77313951 TGTTTACGGCTTTGTACTATCC
1 TGTTTACGGCTATGTACTATCC
77313973 TGT
1 TGT
77313976 CTATGGCGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.47
Consensus pattern (22 bp):
TGTTTACGGCTATGTACTATCC
Found at i:77317337 original size:42 final size:42
Alignment explanation
Indices: 77317216--77317337 Score: 113
Period size: 43 Copynumber: 2.9 Consensus size: 42
77317206 TACCATACCA
** **
77317216 ATGCCATATCCCAGATATGGTAATACAT-GGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTAC-TCGAAATCTCATATCG
* ** *
77317258 ATGCCAATAGCCCACTTATGGTCTTACAC-AAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACTCGAAA-TCTCATATCG
* *
77317301 ATGGCATATCCCAGATATGGTCTTACTCGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACTCGAAATCTCA
77317338 ACTAACCCAA
Statistics
Matches: 62, Mismatches: 14, Indels: 8
0.74 0.17 0.10
Matches are distributed among these distances:
42 30 0.48
43 32 0.52
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACTCGAAATCTCATATCG
Found at i:77328785 original size:28 final size:28
Alignment explanation
Indices: 77328745--77328898 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
77328735 TAAATTGTAC
77328745 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
77328773 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
77328801 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77328829 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77328857 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77328884 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77328899 GACTTAATAT
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 24 0.19
28 100 0.81
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:77328811 original size:56 final size:56
Alignment explanation
Indices: 77328720--77328898 Score: 279
Period size: 56 Copynumber: 3.2 Consensus size: 56
77328710 GAGATTGGCG
* * * *
77328720 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
77328777 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
77328833 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
*
77328888 CTGAGTGTGCG
1 CTAAGTGTGCG
77328899 GACTTAATAT
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
55 23 0.20
56 76 0.67
57 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:77337059 original size:28 final size:28
Alignment explanation
Indices: 77337019--77337203 Score: 300
Period size: 28 Copynumber: 6.5 Consensus size: 28
77337009 TAAATTGTAC
77337019 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
77337047 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
77337075 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
77337103 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* *
77337131 AGCACTAAGTGTGCGAGTTTTAATATATATT
1 AGCACTAAGTGTGCGAG-TTTGAT-TAT-GT
*
77337162 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77337189 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77337204 TGCGACTTAA
Statistics
Matches: 149, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
27 15 0.10
28 104 0.70
29 9 0.06
30 3 0.02
31 18 0.12
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:77339589 original size:14 final size:14
Alignment explanation
Indices: 77339570--77339601 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
77339560 ATTTATAACG
77339570 AATTGTTAAATAAA
1 AATTGTTAAATAAA
77339584 AATTGTTAAATAAA
1 AATTGTTAAATAAA
77339598 AATT
1 AATT
77339602 ATAAATCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (14 bp):
AATTGTTAAATAAA
Found at i:77339606 original size:13 final size:14
Alignment explanation
Indices: 77339570--77339607 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
77339560 ATTTATAACG
*
77339570 AATTGTTAAATAAA
1 AATTGATAAATAAA
*
77339584 AATTGTTAAATAAA
1 AATTGATAAATAAA
77339598 AATT-ATAAAT
1 AATTGATAAAT
77339608 CCTAATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (14 bp):
AATTGATAAATAAA
Found at i:77344148 original size:23 final size:23
Alignment explanation
Indices: 77344122--77344165 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
77344112 TGCCAAGAAA
77344122 AAATAAAAAAAAAGTA-AATTAAT
1 AAATAAAAAAAAA-TAGAATTAAT
*
77344145 AAATAAAATAAAATAGAATTA
1 AAATAAAAAAAAATAGAATTA
77344166 GCTTGCAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.23
Consensus pattern (23 bp):
AAATAAAAAAAAATAGAATTAAT
Found at i:77346863 original size:15 final size:15
Alignment explanation
Indices: 77346843--77346872 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
77346833 ATTTTCTTTC
77346843 ATTTCATGTAATATT
1 ATTTCATGTAATATT
*
77346858 ATTTCATGTCATATT
1 ATTTCATGTAATATT
77346873 TCCATATCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (15 bp):
ATTTCATGTAATATT
Found at i:77353947 original size:26 final size:27
Alignment explanation
Indices: 77353911--77353963 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
77353901 TGTCAGCTAG
* *
77353911 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
77353937 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
77353964 CAGAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:77355298 original size:48 final size:48
Alignment explanation
Indices: 77355234--77355381 Score: 215
Period size: 48 Copynumber: 3.1 Consensus size: 48
77355224 TTGATGTACA
*
77355234 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
77355282 AGATATATATATGTGGTAAAGTCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** * *
77355330 AGCCATGCATATGTGGTAAAGCCAAATGGATAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
77355378 AGAT
1 AGAT
77355382 GTGTATATAT
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 87 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Done.