Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 229 of 345
Found at i:77764390 original size:39 final size:39
Alignment explanation
Indices: 77764347--77764516 Score: 259
Period size: 39 Copynumber: 4.4 Consensus size: 39
77764337 AGGATAAACT
* * * * *
77764347 GGTGGCTTGGGTGGAGGGGCGTAAGTTGGTGGCTTGGTC
1 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
* *
77764386 GGTGGCTTGGGCGGAGGAGCGTAAGTTGGCGGCTTGCTG
1 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
77764425 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
1 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
* *
77764464 GGTGACTTGGGAGGAGGAGCGTAAGTTGGCGGCTTGCTT
1 GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
77764503 GGTGACTTGGGTGG
1 GGTGACTTGGGTGG
77764517 TGGATAAACT
Statistics
Matches: 121, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 121 1.00
ACGTcount: A:0.11, C:0.12, G:0.51, T:0.26
Consensus pattern (39 bp):
GGTGACTTGGGTGGAGGAGCGTAAGTTGGCGGCTTGCTG
Found at i:77764649 original size:6 final size:6
Alignment explanation
Indices: 77764608--77764648 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
77764598 TGGCTGGTGG
*
77764608 GGATGC GGATGC GGATGC GGATGC GGATGC GGATGG GGATG
1 GGATGC GGATGC GGATGC GGATGC GGATGC GGATGC GGATG
77764649 GTGATGGTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.17, C:0.12, G:0.54, T:0.17
Consensus pattern (6 bp):
GGATGC
Found at i:77765675 original size:30 final size:29
Alignment explanation
Indices: 77765631--77765696 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 29
77765621 AAATTTTAAA
*
77765631 TTAACAAAAATAAAATTATATTTTAACTCT
1 TTAA-AAAAATAAAATTATAATTTAACTCT
* * *
77765661 TTAAAAATAATAAAATTTTAATTTAATTTT
1 TTAAAAA-AATAAAATTATAATTTAACTCT
77765691 TTAAAA
1 TTAAAA
77765697 TTTATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (29 bp):
TTAAAAAAATAAAATTATAATTTAACTCT
Found at i:77766348 original size:29 final size:31
Alignment explanation
Indices: 77766300--77766373 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 31
77766290 AAAAGTCAAA
**
77766300 ATAAATTTTTTTTACTAATTTA-ATTGATTTT
1 ATAAATTTTTTAAAC-AATTTATATTGATTTT
* * *
77766331 -TATATTTTTTAAACAATTTATTTTTATTTT
1 ATAAATTTTTTAAACAATTTATATTGATTTT
77766361 ATAAATTTTTTAA
1 ATAAATTTTTTAA
77766374 TTATTTATTT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 6 0.17
30 18 0.51
31 11 0.31
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (31 bp):
ATAAATTTTTTAAACAATTTATATTGATTTT
Found at i:77767023 original size:15 final size:16
Alignment explanation
Indices: 77767003--77767040 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
77766993 AAAAAATACA
77767003 TATATATT-TTAAATT
1 TATATATTATTAAATT
77767018 TATATATTATTAAATT
1 TATATATTATTAAATT
*
77767034 TAAATAT
1 TATATAT
77767041 ATATAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATATATTATTAAATT
Found at i:77767069 original size:20 final size:22
Alignment explanation
Indices: 77766988--77767075 Score: 60
Period size: 20 Copynumber: 4.2 Consensus size: 22
77766978 TCTAATTTGT
* * *
77766988 TTTTAAAAAAATACATATAT-A
1 TTTTAAAAATATATATAAATAA
** * *
77767009 TTTTAAATTTATATATTATTAA
1 TTTTAAAAATATATATAAATAA
* *
77767031 ATTT--AAATATATATAAATAT
1 TTTTAAAAATATATATAAATAA
77767051 TTTTAAAAATATA-AT-AATAA
1 TTTTAAAAATATATATAAATAA
77767071 TTTTA
1 TTTTA
77767076 TATTTTATAT
Statistics
Matches: 49, Mismatches: 15, Indels: 7
0.69 0.21 0.10
Matches are distributed among these distances:
20 23 0.47
21 15 0.31
22 11 0.22
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTTAAAAATATATATAAATAA
Found at i:77767093 original size:6 final size:6
Alignment explanation
Indices: 77767082--77767106 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
77767072 TTTATATTTT
77767082 ATATTA ATATTA ATATTA ATATTA A
1 ATATTA ATATTA ATATTA ATATTA A
77767107 ATTTAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATATTA
Found at i:77767645 original size:18 final size:18
Alignment explanation
Indices: 77767624--77767667 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
77767614 TTTTTTGAAA
*
77767624 ATATTTATTTATTTTTAT
1 ATATTTATTTAATTTTAT
*
77767642 ATATTT-TTAAATTTTAT
1 ATATTTATTTAATTTTAT
77767659 -TATTTATTT
1 ATATTTATTT
77767668 TTAAAAATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 5 0.23
17 11 0.50
18 6 0.27
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATATTTATTTAATTTTAT
Found at i:77767649 original size:30 final size:30
Alignment explanation
Indices: 77767609--77767670 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
77767599 TTAGTTTTAC
*
77767609 TATATTTTTTTGAAAATAT-TTATTTATTTT
1 TATATATTTTT-AAAATATATTATTTATTTT
* *
77767639 TATATATTTTTAAATTTTATTATTTATTTT
1 TATATATTTTTAAAATATATTATTTATTTT
77767669 TA
1 TA
77767671 AAAATTGTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.68
Consensus pattern (30 bp):
TATATATTTTTAAAATATATTATTTATTTT
Found at i:77767655 original size:8 final size:10
Alignment explanation
Indices: 77767627--77767697 Score: 54
Period size: 10 Copynumber: 7.1 Consensus size: 10
77767617 TTTGAAAATA
*
77767627 TTTATTTATT
1 TTTATATATT
77767637 TTTATATATT
1 TTTATATATT
*
77767647 TTTAAAT-TT
1 TTTATATATT
*
77767656 TATTATTTATT
1 T-TTATATATT
* *
77767667 TTTAAAAATT
1 TTTATATATT
* * *
77767677 GTTACACATT
1 TTTATATATT
77767687 TTTATATATT
1 TTTATATATT
77767697 T
1 T
77767698 CTTTGATTTT
Statistics
Matches: 46, Mismatches: 13, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
9 3 0.07
10 40 0.87
11 3 0.07
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (10 bp):
TTTATATATT
Found at i:77768371 original size:18 final size:21
Alignment explanation
Indices: 77768334--77768372 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
77768324 CAACATTCTG
77768334 CTGTTACTTTCTTCTTCCTTT
1 CTGTTACTTTCTTCTTCCTTT
77768355 CTGTT-CTTT-TT-TTCCTTT
1 CTGTTACTTTCTTCTTCCTTT
77768373 TTATTTCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
20 4 0.22
21 5 0.28
ACGTcount: A:0.03, C:0.26, G:0.05, T:0.67
Consensus pattern (21 bp):
CTGTTACTTTCTTCTTCCTTT
Found at i:77775140 original size:25 final size:25
Alignment explanation
Indices: 77775101--77775234 Score: 169
Period size: 25 Copynumber: 5.4 Consensus size: 25
77775091 AAACCAAACA
*
77775101 TTTGTGGCGAATTATCTGAAAAGCC
1 TTTGTGGTGAATTATCTGAAAAGCC
* * *
77775126 TTTTTGGTGAGTTATCTGTAAAGCC
1 TTTGTGGTGAATTATCTGAAAAGCC
* *
77775151 TTTATAGTGAATTATCTGAAAAGCC
1 TTTGTGGTGAATTATCTGAAAAGCC
* *
77775176 TTTGTGGTGAGTTATCTAAAAAGCC
1 TTTGTGGTGAATTATCTGAAAAGCC
* * *
77775201 TTTGTGGCGAATTATCTAAAAAGTC
1 TTTGTGGTGAATTATCTGAAAAGCC
77775226 TTTGTGGTG
1 TTTGTGGTG
77775235 TATTGTATGG
Statistics
Matches: 93, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 93 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (25 bp):
TTTGTGGTGAATTATCTGAAAAGCC
Found at i:77775249 original size:75 final size:75
Alignment explanation
Indices: 77775101--77775251 Score: 167
Period size: 75 Copynumber: 2.0 Consensus size: 75
77775091 AAACCAAACA
* * * * **
77775101 TTTGTGGCGAATTATCTGAAAAGCCTTTTTGGTGAGTTATCTGTAAAGCCTTTATAGTGAATTAT
1 TTTGTGGCGAATTATCTAAAAAGCCTTTGTGGCGAATTATCTAAAAAGCCTTTATAGTGAATTAT
*
77775166 CTGAAAAGCC
66 ATGAAAAGCC
* * * * * * *
77775176 TTTGTGGTGAGTTATCTAAAAAGCCTTTGTGGCGAATTATCTAAAAAGTCTTTGTGGTGTATTGT
1 TTTGTGGCGAATTATCTAAAAAGCCTTTGTGGCGAATTATCTAAAAAGCCTTTATAGTGAATTAT
*
77775241 ATGGAAAGCC
66 ATGAAAAGCC
77775251 T
1 T
77775252 GTATAACGGA
Statistics
Matches: 61, Mismatches: 15, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
75 61 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (75 bp):
TTTGTGGCGAATTATCTAAAAAGCCTTTGTGGCGAATTATCTAAAAAGCCTTTATAGTGAATTAT
ATGAAAAGCC
Found at i:77775251 original size:50 final size:50
Alignment explanation
Indices: 77775101--77775234 Score: 196
Period size: 50 Copynumber: 2.7 Consensus size: 50
77775091 AAACCAAACA
* *
77775101 TTTGTGGCGAATTATCTGAAAAGCCTTTTTGGTGAGTTATCTGTAAAGCC
1 TTTGTGGCGAATTATCTGAAAAGCCTTTGTGGTGAGTTATCTGAAAAGCC
* * * *
77775151 TTTATAGTGAATTATCTGAAAAGCCTTTGTGGTGAGTTATCTAAAAAGCC
1 TTTGTGGCGAATTATCTGAAAAGCCTTTGTGGTGAGTTATCTGAAAAGCC
* *
77775201 TTTGTGGCGAATTATCTAAAAAGTCTTTGTGGTG
1 TTTGTGGCGAATTATCTGAAAAGCCTTTGTGGTG
77775235 TATTGTATGG
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 73 1.00
ACGTcount: A:0.27, C:0.12, G:0.23, T:0.38
Consensus pattern (50 bp):
TTTGTGGCGAATTATCTGAAAAGCCTTTGTGGTGAGTTATCTGAAAAGCC
Found at i:77781830 original size:9 final size:9
Alignment explanation
Indices: 77781818--77781845 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
77781808 CCACCCACAC
77781818 CTCCACTTG
1 CTCCACTTG
77781827 CTCCACTTG
1 CTCCACTTG
77781836 CTCCACTTG
1 CTCCACTTG
77781845 C
1 C
77781846 ACCTGCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.46, G:0.11, T:0.32
Consensus pattern (9 bp):
CTCCACTTG
Found at i:77785751 original size:24 final size:24
Alignment explanation
Indices: 77785724--77785777 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
77785714 TTTCTTTCCT
*
77785724 TTGCATT-CATCCCATGCATTTGCA
1 TTGCATTGCATCACATGCA-TTGCA
**
77785748 TTGCATTGCATCATGTGCATTGCA
1 TTGCATTGCATCACATGCATTGCA
77785772 TTGCAT
1 TTGCAT
77785778 CATTTGCATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (24 bp):
TTGCATTGCATCACATGCATTGCA
Found at i:77785766 original size:19 final size:19
Alignment explanation
Indices: 77785744--77785787 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
77785734 CCCATGCATT
77785744 TGCATTGCATTGCATCATG
1 TGCATTGCATTGCATCATG
*
77785763 TGCATTGCATTGCATCATT
1 TGCATTGCATTGCATCATG
77785782 TGCATT
1 TGCATT
77785788 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (19 bp):
TGCATTGCATTGCATCATG
Found at i:77788475 original size:13 final size:14
Alignment explanation
Indices: 77788457--77788488 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
77788447 AGACTTTCAA
77788457 AAAAAAAAGA-AAG
1 AAAAAAAAGAGAAG
77788470 -AAAAAAAGAGAAG
1 AAAAAAAAGAGAAG
77788483 AAAAAA
1 AAAAAA
77788489 GGAGAGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.53
13 3 0.18
14 5 0.29
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAGAAG
Found at i:77788493 original size:13 final size:13
Alignment explanation
Indices: 77788458--77788493 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
77788448 GACTTTCAAA
77788458 AAAAAAAGA-AAG
1 AAAAAAAGAGAAG
77788470 AAAAAAAGAGAAG
1 AAAAAAAGAGAAG
*
77788483 AAAAAAGGAGA
1 AAAAAAAGAGA
77788494 GGCCAAAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAGAAG
Found at i:77789875 original size:93 final size:93
Alignment explanation
Indices: 77789770--77790261 Score: 508
Period size: 93 Copynumber: 5.3 Consensus size: 93
77789760 AAATCATATT
*
77789770 TCCCTAAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGT
1 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGT
*
77789835 AGAACAGGTCGAAGTTACAAGTCTTATC
66 AGAGCAGGTCGAAGTTACAAGTCTTATC
* * * * *
77789863 TCCCTGAAGTTGCAGTGGAGCATATTGAAG----A-TAGCAAATCTTATTTCCCTGAAGTTGCAG
1 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTA-CAGATCTTATCTCTCTGAAGTTGCAG
* * * * * *
77789923 TGGAACAGATTGAAGCTAAATTATAGATCTTATC
65 TAGAGCAGGTCGAAG-T-TA-CA-AG-TCTTATC
* * * * * *
77789957 TCTCTGAAGTTACAGTAGAACAG---G--TC-AAAGTTACA-AGTCTTATCTC-CTTAAAGTTAC
1 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAA-TTACAGA-TCTTATCTCTC-TGAAGTTGC
* * * * *
77790014 AGTGGAGCA-GACTGAAGATAGCAAATCTTATT
63 AGTAGAGCAGGTC-GAAGTTA-CAAGTCTTATC
77790046 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGT
1 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGT
*
77790111 AGAGCAAGTCGAAGTTACAAGTCTTATC
66 AGAGCAGGTCGAAGTTACAAGTCTTATC
* *
77790139 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTGCAAT
1 TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGT
*
77790204 AGAGTAGGTCGAAGTTACAAGTCTTATC
66 AGAGCAGGTCGAAGTTACAAGTCTTATC
* * *
77790232 TCCCTAAAGTTGCAGTGGAGCAGACTGAAG
1 TCCCTGAAGTTGCAGTGGAACAGATTGAAG
77790262 ATAGCAAATC
Statistics
Matches: 328, Mismatches: 48, Indels: 46
0.78 0.11 0.11
Matches are distributed among these distances:
88 2 0.01
89 62 0.19
90 2 0.01
91 4 0.01
92 5 0.02
93 183 0.56
94 63 0.19
95 7 0.02
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (93 bp):
TCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGT
AGAGCAGGTCGAAGTTACAAGTCTTATC
Found at i:77789882 original size:138 final size:138
Alignment explanation
Indices: 77789713--77790168 Score: 768
Period size: 138 Copynumber: 3.3 Consensus size: 138
77789703 CGGTGAATTC
* * *
77789713 ACAAGTCTTATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATAGCAAATCATATTTCCCTAAA
1 ACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
77789778 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGG
77789843 TCGAAGTT
131 TCGAAGTT
* * *
77789851 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGATAGCAAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
* *
77789916 GTTGCAGTGGAACAGATTGAAGCTAAATTATAGATCTTATCTCTCTGAAGTTACAGTAGAACAGG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGG
*
77789981 TCAAAGTT
131 TCGAAGTT
* *
77789989 ACAAGTCTTATCTCCTTAAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
* *
77790054 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAAG
66 GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGG
77790119 TCGAAGTT
131 TCGAAGTT
* * *
77790127 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG
1 ACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAG
77790169 CTAAATTACA
Statistics
Matches: 294, Mismatches: 24, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
138 294 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (138 bp):
ACAAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAA
GTTGCAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGG
TCGAAGTT
Found at i:77790168 original size:231 final size:231
Alignment explanation
Indices: 77789856--77790372 Score: 838
Period size: 231 Copynumber: 2.2 Consensus size: 231
77789846 AAGTTACAAG
* * * * * *
77789856 TCTTATCTCCCTGAAGTTGCAGTGGAGCATA-TTGAAGATAGCAAATCTTATTTCCCTGAAGTTG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCA-AGTCGAAGTTA-CAAGTCTTATCTCCCTGAAGTTG
* * *
77789920 CAGTGGAACAGATTGAAGCTAAATTATAGATCTTATCTCTCTGAAGTTACAGTAGAACAGGTCAA
64 CAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTACAATAGAACAGGTCAA
* *
77789985 AGTTACAAGTCTTATCTCCTTAAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCC
129 AGTTACAAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCC
77790050 TGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGA
194 TGAAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGA
77790088 TCTTATCTCTCTGAAGTTGCAGTAGAGCAAGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAAGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
* ** *
77790153 GTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTGCAATAGAGTAGGTCGAAG
66 GTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTACAATAGAACAGGTCAAAG
* *
77790218 TTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCATATTTTCCTG
131 TTACAAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTG
77790283 AAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGA
196 AAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGA
* *
77790319 TCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTCGAAGTTACAAGTCTTATCTCC
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAAGTCGAAGTTACAAGTCTTATCTCC
77790373 TTGTGCTTAC
Statistics
Matches: 265, Mismatches: 19, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
231 231 0.87
232 34 0.13
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (231 bp):
TCTTATCTCTCTGAAGTTGCAGTAGAGCAAGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
GTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTACAATAGAACAGGTCAAAG
TTACAAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTG
AAGTTGCAGTGGAACAGATTGAAGCTAAATTACAGA
Found at i:77790295 original size:276 final size:275
Alignment explanation
Indices: 77789721--77790306 Score: 727
Period size: 276 Copynumber: 2.1 Consensus size: 275
77789711 TCACAAGTCT
*
77789721 TATCTCCCTGAAGTTACAGTGGAGTAGACTGAAGATAGCAAATCATATTTCCCTAAAGTTGCAGT
1 TATCT-CCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTAAAGTTGCAGT
*
77789786 GGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGGTCGAAGTT
65 GGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAAGTCGAAGTT
* * * *
77789851 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGATAGCAAATCTTATTTCCCTGAA
130 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAAATCTTATCTCCCTAAA
* * * * * * *
77789916 GTTGCAGTGGAACAGATTGAAGCTAAATTATAGATCTTATCTCTCTGAAGTTACAGTAGAACAGG
195 GTTGCAATAGAACAGATCGAAGCTAAATCATAGATCTTATCTCCCTAAAGTTACAGTAGAACAGC
* * *
77789981 TCAAAGTTACAAGTCT
260 TCAAAGATACAAATCA
* * *
77789997 TATCTCCTTAAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGAAGTTGCAGT
1 TATCTCC-TGAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTAAAGTTGCAGT
*
77790062 GGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAAGTCGAAGTT
65 GGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAAGTCGAAGTT
* *
77790127 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGCTAAATTA-CAGATCTTATCTCT
130 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG----A-TAGCAAATCTTATCTCC
** * * * *
77790191 CTAAAGTTGCAATAGAGTAGGTCGAAG-T-TA-CA-AG-TCTTATCTCCCTAAAGTTGCAGTGGA
190 CTAAAGTTGCAATAGAACAGATCGAAGCTAAATCATAGATCTTATCTCCCTAAAGTTACAGTAGA
* *
77790251 GCAGACT-GAAGATAGCAAATCA
255 ACAG-CTCAAAGATA-CAAATCA
* * * *
77790273 TATTTTCCTGAAGTTGCAGTGGAACAGATTGAAG
1 TA-TCTCCTGAAGTTACAGTGGAGCAGACTGAAG
77790307 CTAAATTACA
Statistics
Matches: 266, Mismatches: 35, Indels: 18
0.83 0.11 0.06
Matches are distributed among these distances:
275 32 0.12
276 193 0.73
277 5 0.02
278 1 0.00
279 1 0.00
280 32 0.12
281 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (275 bp):
TATCTCCTGAAGTTACAGTGGAGCAGACTGAAGATAGCAAATCATATTTCCCTAAAGTTGCAGTG
GAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAAGTCGAAGTTA
CAAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAAATCTTATCTCCCTAAAG
TTGCAATAGAACAGATCGAAGCTAAATCATAGATCTTATCTCCCTAAAGTTACAGTAGAACAGCT
CAAAGATACAAATCA
Found at i:77790302 original size:138 final size:137
Alignment explanation
Indices: 77790088--77790372 Score: 446
Period size: 138 Copynumber: 2.1 Consensus size: 137
77790078 AAATTACAGA
* * * * * *
77790088 TCTTATCTCTCTGAAGTTGCAGTAGAGCAAGTCGAAGTTACAAGTCTTATCTCCCTGAAGTTGCA
1 TCTTATCTCCCTAAAGTTGCAGTAGAGCAACTCGAAGATACAAATCATATCTCCCTGAAGTTGCA
77790153 GTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTGCAATAGAGTAGGTCGAAG
66 GTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTGCAATAGAGTAGGTCGAAG
77790218 TTACAAG
131 TTACAAG
* * *
77790225 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT-GAAGATAGCAAATCATATTTTCCTGAAGTTG
1 TCTTATCTCCCTAAAGTTGCAGTAGAGCA-ACTCGAAGATA-CAAATCATATCTCCCTGAAGTTG
* *
77790289 CAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTCGA
64 CAGTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTGCAATAGAGTAGGTCGA
77790354 AGTTACAAG
129 AGTTACAAG
77790363 TCTTATCTCC
1 TCTTATCTCC
77790373 TTGTGCTTAC
Statistics
Matches: 135, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
137 32 0.24
138 103 0.76
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (137 bp):
TCTTATCTCCCTAAAGTTGCAGTAGAGCAACTCGAAGATACAAATCATATCTCCCTGAAGTTGCA
GTGGAACAGATTGAAGCTAAATTACAGATCTTATCTCTCTAAAGTTGCAATAGAGTAGGTCGAAG
TTACAAG
Found at i:77790440 original size:47 final size:47
Alignment explanation
Indices: 77790387--77790519 Score: 122
Period size: 41 Copynumber: 3.0 Consensus size: 47
77790377 GCTTACAAGG
77790387 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
1 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
* * * * * *
77790434 AGCAGATC-----CA-AGATGATTTGGC-ATCTC-TGTATCAAGCG-GGG
1 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-T-TA-CGTTGA
77790475 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTT
1 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTT
77790520 AAAGTAAATC
Statistics
Matches: 63, Mismatches: 11, Indels: 24
0.64 0.11 0.24
Matches are distributed among these distances:
39 3 0.05
40 4 0.06
41 21 0.33
42 4 0.06
46 4 0.06
47 20 0.32
48 4 0.06
49 3 0.05
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (47 bp):
AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGA
Found at i:77790534 original size:88 final size:87
Alignment explanation
Indices: 77790385--77790574 Score: 308
Period size: 88 Copynumber: 2.2 Consensus size: 87
77790375 GTGCTTACAA
* *
77790385 GGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAGATCCAAGATGA
1 GGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCCAAGATGA
*
77790450 TTTGGCATCTCTGTATCAAGCGG
66 TTTGGCATCTCTGTAGC-AGCGG
*
77790473 GGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGTAAATCCAAGATGA
1 GGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCCAAGATGA
* *
77790538 TTTGGCGTCTCTGTAGCGGCGG
66 TTTGGCATCTCTGTAGCAGCGG
*
77790560 AGAGCAGATCGAAGA
1 GGAGCAGATCGAAGA
77790575 TAACAGATTT
Statistics
Matches: 95, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
87 18 0.19
88 77 0.81
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (87 bp):
GGAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTAAAGCAAATCCAAGATGA
TTTGGCATCTCTGTAGCAGCGG
Found at i:77790590 original size:44 final size:44
Alignment explanation
Indices: 77790536--77791007 Score: 550
Period size: 44 Copynumber: 10.4 Consensus size: 44
77790526 AATCCAAGAT
77790536 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
77790580 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
77790624 GATTTGGCGTCTCTGTAGTGACGGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
** *
77790668 GATTTGGCGTCTTCGATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAATA
1 GATTTGGCGTC-TC----T-G--TAGC-G--GCGG-AGA--GCAGATCGAAGATAACA
* *
77790726 GATTTGGCATCTCTGTAGCGGCAGG-GAACAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTAGCGGC-GGAGAGCAGATCGAAGATAACA
* * *
77790770 AATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAGCA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
77790814 GATTTGGCGTCTCTGTAGCGGCGAAGGGCAGATCGAAGATAATA
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
77790858 GATTTGGCGTCACTGTAGCGGCGGAGAGCAGATCAAAGATAACT
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* * *
77790902 GATTTAGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACG
1 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
* ** * * * *
77790946 GATTTGACGTCTCTGTATTGTCAAGAGAGCAGATCAAAGATGACA
1 GATTTGGCGTCTCTGTAGCGGC-GGAGAGCAGATCGAAGATAACA
77790991 GATTTGGCGTCTCTGTA
1 GATTTGGCGTCTCTGTA
77791008 TTTGCAGAGA
Statistics
Matches: 366, Mismatches: 45, Indels: 33
0.82 0.10 0.07
Matches are distributed among these distances:
43 2 0.01
44 278 0.76
45 36 0.10
46 2 0.01
47 2 0.01
48 2 0.01
49 2 0.01
50 3 0.01
52 2 0.01
53 2 0.01
55 3 0.01
56 3 0.01
57 2 0.01
58 27 0.07
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (44 bp):
GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACA
Found at i:77790714 original size:58 final size:58
Alignment explanation
Indices: 77790624--77790733 Score: 184
Period size: 58 Copynumber: 1.9 Consensus size: 58
77790614 GAAGATAACA
* * *
77790624 GATTTGGCGTCTCTGTAGTGACGGAGAGCAGATCGAAGATAATAGATTTGGCGTCTTC
1 GATTTGGCATCTCTGTAGCGACAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTTC
*
77790682 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAATAGATTTGGC
1 GATTTGGCATCTCTGTAGCGACAGAGAGCAGATCGAAGATAATAGATTTGGC
77790734 ATCTCTGTAG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.27
Consensus pattern (58 bp):
GATTTGGCATCTCTGTAGCGACAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTTC
Found at i:77790758 original size:102 final size:102
Alignment explanation
Indices: 77790580--77790781 Score: 307
Period size: 102 Copynumber: 2.0 Consensus size: 102
77790570 GAAGATAACA
* * * *
77790580 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGA
1 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGA
* * *
77790645 CGGAGAGCAGATCGAAGATAATAGATTTGGCGTCTTC
66 CGGAGAACAGATCGAAGATAACAAATTTGGCGTCTTC
* *
77790682 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAATAGATTTGGCATCTCTGTAGCGG
1 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGA
77790747 CAGG-GAACAGATCGAAGATAACAAATTTGGCGTCT
66 C-GGAGAACAGATCGAAGATAACAAATTTGGCGTCT
77790782 CTGTAGTGGC
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
102 88 0.98
103 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.25
Consensus pattern (102 bp):
GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCATCTCTGTAGCGA
CGGAGAACAGATCGAAGATAACAAATTTGGCGTCTTC
Found at i:77790800 original size:146 final size:142
Alignment explanation
Indices: 77790536--77790957 Score: 544
Period size: 146 Copynumber: 3.0 Consensus size: 142
77790526 AATCCAAGAT
*
77790536 GATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGC-GAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAGCGG
*
77790601 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGACGGAGAGCAGATCGAAGATAA
65 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAA
*
77790666 TAGATTTGGCGTCTTC
130 T-GATTT-GCGTC-TA
* *
77790682 GATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAATAGATTTGGCATCTCTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGC-GAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAGCGG
* *
77790747 CAGG-GAACAGATCGAAGATAACAAATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAG---
65 C-GGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATA
77790808 AT-A-----G-C-A
129 ATGATTTGCGTCTA
* *
77790814 GATTTGGCGTCTCTGTAGCGGCGAAGGGCAGATCGAAGATAATAGATTTGGCGTCACTGTAGCGG
1 GATTTGGCGTCTCTGTAGCGGCG-AGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAGCGG
* * * * *
77790879 CGGAGAGCAGATCAAAGATAACTGATTTAGCATCTCTGTAGCGGCGGAGAGCAGATCGAAGATAA
65 CGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAA
*
77790944 CGGATTTGACGTCT
130 -TGATTTG-CGTCT
77790958 CTGTATTGTC
Statistics
Matches: 240, Mismatches: 20, Indels: 33
0.82 0.07 0.11
Matches are distributed among these distances:
131 3 0.01
132 110 0.46
134 1 0.00
135 2 0.01
137 1 0.00
141 1 0.00
143 3 0.01
144 1 0.00
146 116 0.48
147 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (142 bp):
GATTTGGCGTCTCTGTAGCGGCGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAGCGGC
GGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAAT
GATTTGCGTCTA
Found at i:77791703 original size:12 final size:11
Alignment explanation
Indices: 77791679--77791708 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
77791669 CATTTTGTTC
77791679 TTTAGTTTCTTT
1 TTTA-TTTCTTT
77791691 TTTATTTCTTT
1 TTTATTTCTTT
77791702 TTTATTT
1 TTTATTT
77791709 TTGTTTACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.10, C:0.07, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTATTTCTTT
Found at i:77794915 original size:58 final size:54
Alignment explanation
Indices: 77794816--77794956 Score: 146
Period size: 58 Copynumber: 2.6 Consensus size: 54
77794806 TTAATTCATA
*
77794816 TAATAATAATTATATTAAGAATGTTAATAAATTATATTTTTTATTAAATTATATT
1 TAATAATAATTATATTAAAAATGTTAATAAATTATATTTTTTATTAAATTAT-TT
* * * *
77794871 TAATAATAATTATGTTAAAATATGATTAAATTATTTAT-TATTTTTATTAAATTGTTT
1 TAATAATAATTATATTAAAA-ATG-TT-AATAAATTATAT-TTTTTATTAAATTATTT
77794928 TCAATAATAATCT-TATT-AAAAT-TTAATAA
1 T-AATAATAAT-TATATTAAAAATGTTAATAA
77794957 CAATAACAAT
Statistics
Matches: 73, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
53 4 0.05
54 2 0.03
55 18 0.25
56 5 0.07
57 9 0.12
58 34 0.47
59 1 0.01
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.50
Consensus pattern (54 bp):
TAATAATAATTATATTAAAAATGTTAATAAATTATATTTTTTATTAAATTATTT
Found at i:77795138 original size:16 final size:16
Alignment explanation
Indices: 77795117--77795187 Score: 81
Period size: 16 Copynumber: 4.4 Consensus size: 16
77795107 TGAATTACTG
* *
77795117 ATTACAGCTTTATTCT
1 ATTACAGCTCTATTCA
*
77795133 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCA
*
77795149 ATTACAACTCTATTCA
1 ATTACAGCTCTATTCA
*
77795165 ATTACAGC-CATATTCC
1 ATTACAGCTC-TATTCA
77795181 ATTACAG
1 ATTACAG
77795188 TGAACCAAAC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:77798537 original size:16 final size:16
Alignment explanation
Indices: 77798512--77798564 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
77798502 CTATAATATA
*
77798512 ATTATATTAATTAATT
1 ATTATTTTAATTAATT
*
77798528 ATTATTTTAAATAA-T
1 ATTATTTTAATTAATT
* *
77798543 ATTGTCTTTCATTAATT
1 ATTAT-TTTAATTAATT
77798560 ATTAT
1 ATTAT
77798565 GAAATAACTG
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
15 5 0.17
16 19 0.66
17 5 0.17
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.57
Consensus pattern (16 bp):
ATTATTTTAATTAATT
Found at i:77800488 original size:26 final size:27
Alignment explanation
Indices: 77800452--77800511 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 27
77800442 TCTTAGATGG
* *
77800452 ACCCAACTTAAATCTGGCCTAAATGT-
1 ACCCAACTTAAATCTGACCTAAATCTA
77800478 ACCCAACTTAAATCTGACCTAAATCTA
1 ACCCAACTTAAATCTGACCTAAATCTA
77800505 ACCCAAC
1 ACCCAAC
77800512 CCATTTGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 24 0.77
27 7 0.23
ACGTcount: A:0.38, C:0.32, G:0.07, T:0.23
Consensus pattern (27 bp):
ACCCAACTTAAATCTGACCTAAATCTA
Found at i:77807501 original size:29 final size:30
Alignment explanation
Indices: 77807463--77807521 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
77807453 ACTTTAGTCT
**
77807463 TTCAAATTTTCTATATTT-TAATTTAACCC
1 TTCAAATTTTAAATATTTATAATTTAACCC
* *
77807492 TTCAACTTTTAAATATTTATGATTTAACCC
1 TTCAAATTTTAAATATTTATAATTTAACCC
77807522 CTTTAGTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.32, C:0.17, G:0.02, T:0.49
Consensus pattern (30 bp):
TTCAAATTTTAAATATTTATAATTTAACCC
Found at i:77810681 original size:5 final size:5
Alignment explanation
Indices: 77810671--77810702 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
77810661 CTCGAAAATT
77810671 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA TT
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA TT
77810703 AAACGCTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (5 bp):
TTCGA
Found at i:77813196 original size:16 final size:18
Alignment explanation
Indices: 77813164--77813196 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
77813154 GAATAATTTT
77813164 TTAATAAAAATTCAGCAC
1 TTAATAAAAATTCAGCAC
77813182 TTAA-AAAAATT-AGCA
1 TTAATAAAAATTCAGCA
77813197 ATAAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 7 0.47
18 4 0.27
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (18 bp):
TTAATAAAAATTCAGCAC
Found at i:77814134 original size:14 final size:15
Alignment explanation
Indices: 77814115--77814178 Score: 55
Period size: 14 Copynumber: 4.5 Consensus size: 15
77814105 ACCCTAAACA
77814115 TTATTAAAATTAT-T
1 TTATTAAAATTATAT
*
77814129 TTATTAAATTTATAT
1 TTATTAAAATTATAT
*
77814144 TTATTACAATGT-TAT
1 TTATTAAAAT-TATAT
* *
77814159 TT-TTTAAATAATA-
1 TTATTAAAATTATAT
77814172 TTATTAA
1 TTATTAA
77814179 GTGAATTTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
13 2 0.05
14 22 0.56
15 14 0.36
16 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (15 bp):
TTATTAAAATTATAT
Found at i:77814148 original size:15 final size:14
Alignment explanation
Indices: 77814115--77814167 Score: 63
Period size: 14 Copynumber: 3.6 Consensus size: 14
77814105 ACCCTAAACA
*
77814115 TTATTAAAATTATT
1 TTATTAAATTTATT
77814129 TTATTAAATTTATAT
1 TTATTAAATTTAT-T
77814144 TTATTACAATGTTATT
1 TTATTA-AAT-TTATT
77814160 TT-TTAAAT
1 TTATTAAAT
77814168 AATATTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
14 15 0.43
15 10 0.29
16 6 0.17
17 4 0.11
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (14 bp):
TTATTAAATTTATT
Found at i:77818118 original size:7 final size:7
Alignment explanation
Indices: 77818110--77818154 Score: 72
Period size: 7 Copynumber: 6.4 Consensus size: 7
77818100 ATAATTACGA
*
77818110 ATTGAGA
1 ATTGAGG
*
77818117 ATTGATG
1 ATTGAGG
77818124 ATTGAGG
1 ATTGAGG
77818131 ATTGAGG
1 ATTGAGG
77818138 ATTGAGG
1 ATTGAGG
77818145 ATTGAGG
1 ATTGAGG
77818152 ATT
1 ATT
77818155 AAGTATTGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (7 bp):
ATTGAGG
Found at i:77818136 original size:21 final size:21
Alignment explanation
Indices: 77818110--77818164 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
77818100 ATAATTACGA
77818110 ATTGAGAATTGATGATTGAGG
1 ATTGAGAATTGATGATTGAGG
* *
77818131 ATTGAGGATTGAGGATTGAGG
1 ATTGAGAATTGATGATTGAGG
* *
77818152 ATTAAGTATTGAT
1 ATTGAGAATTGAT
77818165 TTAAAAAGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (21 bp):
ATTGAGAATTGATGATTGAGG
Found at i:77820836 original size:16 final size:16
Alignment explanation
Indices: 77820812--77820851 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
77820802 CACAGGCTGT
*
77820812 CACACGGCGTGTGCCG
1 CACACGGCGTATGCCG
*
77820828 CATACGGCGTATGCCG
1 CACACGGCGTATGCCG
77820844 CACACGGC
1 CACACGGC
77820852 CACCCCACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.17, C:0.38, G:0.33, T:0.12
Consensus pattern (16 bp):
CACACGGCGTATGCCG
Found at i:77825724 original size:29 final size:27
Alignment explanation
Indices: 77825706--77825775 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
77825696 ATATTAAGTC
77825706 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
77825733 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
77825761 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
77825776 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:77825769 original size:28 final size:28
Alignment explanation
Indices: 77825706--77825803 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
77825696 ATATTAAGTC
*
77825706 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
77825733 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
77825761 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
77825790 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77825804 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:77836641 original size:27 final size:27
Alignment explanation
Indices: 77836592--77836702 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
77836582 AGGATGCGTC
* * *
77836592 CTGGTGGCTATGCTACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTATT
*
77836619 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTATT
*
77836646 CTGGTGGCTCTGTCACAATTATCTATT
1 CTGGTGGCTCTGCCACAATTATCTATT
* * *
77836673 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTATT
77836699 CTGG
1 CTGG
77836703 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 15 0.20
27 57 0.77
28 2 0.03
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTATT
Found at i:77836676 original size:54 final size:53
Alignment explanation
Indices: 77836592--77836702 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 53
77836582 AGGATGCGTC
*
77836592 CTGGTGGCTATGCTACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCTACAATTATCTAATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
77836646 CTGGTGGCTCTG-TCACAATTATCTATTCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCT-ACAATTATCTAATCTGGTGACTCTGCCACATTATCTGTT
77836699 CTGG
1 CTGG
77836703 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
53 13 0.25
54 39 0.75
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATGCTACAATTATCTAATCTGGTGACTCTGCCACATTATCTGTT
Found at i:77843316 original size:29 final size:30
Alignment explanation
Indices: 77843263--77843323 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 30
77843253 AGGATGGGAG
* **
77843263 GGGAGTAAATGTTTTGGGGGGAAGT-GAGA
1 GGGAGTAAAAGTTTTGGGGAAAAGTAGAGA
77843292 GGGAGTAAAAGTTTTGGGGAAAAGTAGAGA
1 GGGAGTAAAAGTTTTGGGGAAAAGTAGAGA
77843322 GG
1 GG
77843324 TTTGGGAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 22 0.79
30 6 0.21
ACGTcount: A:0.33, C:0.00, G:0.46, T:0.21
Consensus pattern (30 bp):
GGGAGTAAAAGTTTTGGGGAAAAGTAGAGA
Found at i:77846287 original size:22 final size:21
Alignment explanation
Indices: 77846227--77846289 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
77846217 TTGTACGGGA
**
77846227 TTGCACTTCAGTGCCTCTG-T
1 TTGCACTTTTGTGCCTCTGTT
*
77846247 TTGCAC-TTTGATGCGTCTGTAT
1 TTGCACTTTTG-TGCCTCTGT-T
77846269 TTGCACTTTTGTGCCTCTGTT
1 TTGCACTTTTGTGCCTCTGTT
77846290 AGCATGTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
19 2 0.06
20 13 0.37
21 1 0.03
22 15 0.43
23 4 0.11
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.46
Consensus pattern (21 bp):
TTGCACTTTTGTGCCTCTGTT
Found at i:77850226 original size:18 final size:17
Alignment explanation
Indices: 77850189--77850234 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
77850179 GTCTCCTTCT
77850189 TTTTTTCTTTCTTTCCTC
1 TTTTTT-TTTCTTTCCTC
*
77850207 TTTTTTTTTCTTTCTTTC
1 TTTTTTTTTCTTTC-CTC
*
77850225 TTTTTGTTTC
1 TTTTTTTTTC
77850235 GTTTTGGCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTTTTTTCTTTCCTC
Found at i:77853427 original size:58 final size:58
Alignment explanation
Indices: 77853337--77853459 Score: 237
Period size: 58 Copynumber: 2.1 Consensus size: 58
77853327 TTGCTTCATA
77853337 AAAACTCTTAATTTTGTCTATTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
1 AAAACTCTTAATTTTGTCTATTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
*
77853395 AAAACTCTTAATTTTGTCTCTTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
1 AAAACTCTTAATTTTGTCTATTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
77853453 AAAACTC
1 AAAACTC
77853460 ATTTTCAAAA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 64 1.00
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.43
Consensus pattern (58 bp):
AAAACTCTTAATTTTGTCTATTTGCAAATCAATCCTATTTTCAAGATTAAATCTATTT
Found at i:77855636 original size:27 final size:26
Alignment explanation
Indices: 77855588--77855639 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
77855578 GCGAGGCTGC
*
77855588 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
77855614 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
77855640 TTGCAGTGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77855652 original size:67 final size:68
Alignment explanation
Indices: 77855501--77855658 Score: 219
Period size: 67 Copynumber: 2.3 Consensus size: 68
77855491 CACCACAAAA
* * * *
77855501 ATTGCAGCGAAGCTGCCAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGCCACCAGAACAG--A-ATATATGTGGCGAAGC
77855566 CACCAG
63 CACCAG
* *
77855572 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAG-ATATATGTGGCGAGGCCAC
1 ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGCCACCAGAACAGAATATATGTGGCGAAGCCAC
77855636 CAG
66 CAG
*
77855639 ATTGCAGTGAGGCTGCCAGA
1 ATTGCAGCGAGGCTGCCAGA
77855659 ACGCTTCCTC
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
67 40 0.50
71 40 0.50
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.19
Consensus pattern (68 bp):
ATTGCAGCGAGGCTGCCAGATATTGTGACGAAGCCACCAGAACAGAATATATGTGGCGAAGCCAC
CAG
Found at i:77861582 original size:27 final size:26
Alignment explanation
Indices: 77861534--77861593 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
77861524 GCGAAGCTGC
*
77861534 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
77861561 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
77861587 CAGATAT
1 CAGATAT
77861594 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77861606 original size:33 final size:32
Alignment explanation
Indices: 77861555--77861618 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
77861545 ACGAAGTCAC
* *
77861555 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCAAAGCCACCAGAA
* *
77861587 CAGATATATATATATGTGGCAAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCAAAGCCACCAGA
77861619 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCAAAGCCACCAGAA
Found at i:77861674 original size:27 final size:26
Alignment explanation
Indices: 77861634--77861685 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
77861624 GCGAGGCTGC
*
77861634 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
77861660 CAGATATATGTGACGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
77861686 TTGCGGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:77862367 original size:27 final size:27
Alignment explanation
Indices: 77862337--77862455 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
77862327 GGGGTAAAAT
* * *
77862337 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
77862364 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
77862391 AGTATTTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
77862418 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
77862445 GGTAATTCTAC
1 GGTAATTCTAC
77862456 AACTTATCCA
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:77862441 original size:54 final size:54
Alignment explanation
Indices: 77862338--77862455 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 54
77862328 GGGTAAAATG
* * *
77862338 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
* * * *
77862392 GTATTTCTACCCTATAAGGGTATTTCGGTAATTCTATCCTACAGGGGTATTTCG
1 GTAATTCTACCCTATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
77862446 GTAATTCTAC
1 GTAATTCTAC
77862456 AACTTATCCA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCTATAAGGGTATCTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:77863100 original size:156 final size:156
Alignment explanation
Indices: 77862837--77863147 Score: 613
Period size: 156 Copynumber: 2.0 Consensus size: 156
77862827 CTCTCATATG
77862837 CCAACTCACGCCACTACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAACACATTAAACTT
1 CCAACTCACGCCACTACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAACACATTAAACTT
77862902 TAAAGCGCACCTACTTGCTTCCAGATTTATTGAAAAGAAAAACCAAAATATATTGCAAGAGCCAA
66 TAAAGCGCACCTACTTGCTTCCAGATTTATTGAAAAGAAAAACCAAAATATATTGCAAGAGCCAA
77862967 AACTTGAACCTTGGACCCCTTGCTTA
131 AACTTGAACCTTGGACCCCTTGCTTA
77862993 CCAACTCACGCCACTACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAACACATTAAACTT
1 CCAACTCACGCCACTACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAACACATTAAACTT
77863058 TAAAGCGCACCTACTTGCTTCCAGATTTATTGAAAAGAAAAACCAAAATATATTGCAAGAGCCAA
66 TAAAGCGCACCTACTTGCTTCCAGATTTATTGAAAAGAAAAACCAAAATATATTGCAAGAGCCAA
*
77863123 GACTTGAACCTTGGACCCCTTGCTT
131 AACTTGAACCTTGGACCCCTTGCTT
77863148 CCTCTGTGGC
Statistics
Matches: 154, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
156 154 1.00
ACGTcount: A:0.35, C:0.28, G:0.12, T:0.25
Consensus pattern (156 bp):
CCAACTCACGCCACTACCACTAGGCCATCAACTCATTTGTGTCATAAATCCAACACATTAAACTT
TAAAGCGCACCTACTTGCTTCCAGATTTATTGAAAAGAAAAACCAAAATATATTGCAAGAGCCAA
AACTTGAACCTTGGACCCCTTGCTTA
Found at i:77872373 original size:139 final size:139
Alignment explanation
Indices: 77872123--77872400 Score: 522
Period size: 139 Copynumber: 2.0 Consensus size: 139
77872113 AATGGAAAAG
*
77872123 AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAGAAAAAAGAATATGCATTT
1 AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAGAAAAAAGAATATACATTT
77872188 TCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTAATATCCTAT
66 TCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTAATATCCTAT
77872253 CTCATTCGA
131 CTCATTCGA
77872262 AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAGAAAAAA-ATATATACATT
1 AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAGAAAAAAGA-ATATACATT
*
77872326 TTCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTCATATCCTA
65 TTCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTAATATCCTA
77872391 TCTCATTCGA
130 TCTCATTCGA
77872401 TTTATATAAT
Statistics
Matches: 136, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
138 1 0.01
139 135 0.99
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (139 bp):
AAAGGGAGTAAGCATAGAGCTTAGTAAGCTTGCATGTAAAGAATAAGAAAAAAGAATATACATTT
TCATACACATACATAAAATAATTTAATTCATCTTATTCTCAACAATCATTGAAGTAATATCCTAT
CTCATTCGA
Found at i:77872775 original size:94 final size:94
Alignment explanation
Indices: 77872664--77872899 Score: 312
Period size: 94 Copynumber: 2.5 Consensus size: 94
77872654 TAGGACCACT
* * ** *
77872664 TATCGATGCCAATGCCATGTTGCAAACATGGTCATACATGGGATTGCACATATCGAAGCCAATAG
1 TATCGATGCCAATGCCATGTTCCAAACATGGTCTTACATGGGATCACACACATCGAAGCCAATAG
* *
77872729 CCTAGCTATGGCCTTACACGATGTTCTCA
66 CCCAACTATGGCCTTACACGATGTTCTCA
* * * *
77872758 TATCAATGCCAATGCCATGTCCCAAACATGATCTTACATGGGATCACACACATCGAAGCCGATAG
1 TATCGATGCCAATGCCATGTTCCAAACATGGTCTTACATGGGATCACACACATCGAAGCCAATAG
* *
77872823 CCCAATTATGGTCTTACACGATGTTCTCA
66 CCCAACTATGGCCTTACACGATGTTCTCA
* * *
77872852 AATCGATGCCAATGTCATG-TCCTAGACATGGTCTTACATGGGATCACA
1 TATCGATGCCAATGCCATGTTCC-AAACATGGTCTTACATGGGATCACA
77872900 TAACAATGCC
Statistics
Matches: 122, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
93 2 0.02
94 120 0.98
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (94 bp):
TATCGATGCCAATGCCATGTTCCAAACATGGTCTTACATGGGATCACACACATCGAAGCCAATAG
CCCAACTATGGCCTTACACGATGTTCTCA
Found at i:77874119 original size:20 final size:20
Alignment explanation
Indices: 77874094--77874133 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
77874084 ATTTGTGGTC
77874094 TCAAAACCACTGTTCTGACT
1 TCAAAACCACTGTTCTGACT
77874114 TCAAAACCACTGTTCTGACT
1 TCAAAACCACTGTTCTGACT
77874134 AGACCCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.30
Consensus pattern (20 bp):
TCAAAACCACTGTTCTGACT
Found at i:77874922 original size:20 final size:20
Alignment explanation
Indices: 77874893--77874931 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
77874883 TTATGCTAAT
*
77874893 TAAATGGAATGGAAAGTAAG
1 TAAATAGAATGGAAAGTAAG
*
77874913 TAAATAGAATGGTAAGTAA
1 TAAATAGAATGGAAAGTAA
77874932 ATGGAGTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (20 bp):
TAAATAGAATGGAAAGTAAG
Found at i:77875796 original size:15 final size:15
Alignment explanation
Indices: 77875778--77875815 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
77875768 CTCAACCGTG
77875778 TGTGACACACGGTCA
1 TGTGACACACGGTCA
*
77875793 TGTGACACAGGGTCA
1 TGTGACACACGGTCA
*
77875808 TGCGACAC
1 TGTGACAC
77875816 GGTAGTGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.18
Consensus pattern (15 bp):
TGTGACACACGGTCA
Found at i:77877689 original size:46 final size:44
Alignment explanation
Indices: 77877635--77877811 Score: 203
Period size: 46 Copynumber: 3.9 Consensus size: 44
77877625 ATATTTGGGT
77877635 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
*** * *
77877679 ATGTCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGA
*
77877728 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A
* *
77877773 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77877812 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 12, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 70 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (44 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
Found at i:77877794 original size:93 final size:93
Alignment explanation
Indices: 77877635--77877803 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
77877625 ATATTTGGGT
***
77877635 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTTG
77877700 AGTCCGAGTTCGAGAGATGTAACTAGGC
66 AGTCCGAGTTCGAGAGATGTAACTAGGC
* *
77877728 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTTG
77877793 AGTCCGAGTTC
66 AGTCCGAGTTC
77877804 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGTTG
AGTCCGAGTTCGAGAGATGTAACTAGGC
Found at i:77880788 original size:21 final size:21
Alignment explanation
Indices: 77880762--77880802 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
77880752 AAGTGTGTTT
* *
77880762 ATTCATGACATAGGTAAATTC
1 ATTCATAACATAAGTAAATTC
77880783 ATTCATAACATAAGTAAATT
1 ATTCATAACATAAGTAAATT
77880803 TCTCACATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.10, T:0.34
Consensus pattern (21 bp):
ATTCATAACATAAGTAAATTC
Found at i:77884886 original size:11 final size:11
Alignment explanation
Indices: 77884870--77884898 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
77884860 ATATGTTGGT
77884870 GTTTTGGGTTA
1 GTTTTGGGTTA
77884881 GTTTTGGGTTA
1 GTTTTGGGTTA
77884892 GTTTTGG
1 GTTTTGG
77884899 AGTGTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.00, G:0.38, T:0.55
Consensus pattern (11 bp):
GTTTTGGGTTA
Found at i:77888169 original size:9 final size:8
Alignment explanation
Indices: 77888148--77888177 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
77888138 AATTTGATTT
77888148 TTTTTATA
1 TTTTTATA
77888156 TTTTTATA
1 TTTTTATA
77888164 TGTTTTATA
1 T-TTTTATA
77888173 TTTTT
1 TTTTT
77888178 GCACTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (8 bp):
TTTTTATA
Found at i:77889619 original size:54 final size:54
Alignment explanation
Indices: 77889487--77889718 Score: 392
Period size: 54 Copynumber: 4.2 Consensus size: 54
77889477 GCAATATGAG
77889487 CAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGAAAAA
1 CAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--GAAAAA
* *
77889543 TAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAG
1 CAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
*
77889597 CAGAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 CAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
*
77889651 CAGAAATTAAAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAAAA
1 CAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAA
77889707 CAGAAATTAAAA
1 CAGAAATTAAAA
77889719 ATACCTCAGC
Statistics
Matches: 167, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
54 97 0.58
56 70 0.42
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (54 bp):
CAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
Found at i:77889700 original size:110 final size:109
Alignment explanation
Indices: 77889485--77889718 Score: 398
Period size: 110 Copynumber: 2.1 Consensus size: 109
77889475 TCGCAATATG
*
77889485 AGCAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAGAAAAATAGAAAT
1 AGCAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AGAAAAACAGAAAT
77889550 TAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
65 TAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
*
77889595 AGCAGAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTT-GAAAAACAGAAATT
1 AGCAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAGAAAAACAGAAATT
*
77889659 AAAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAAA
66 AAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA
*
77889705 AACAGAAATTAAAA
1 AGCAGAAATTAAAA
77889719 ATACCTCAGC
Statistics
Matches: 118, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
108 47 0.40
110 71 0.60
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (109 bp):
AGCAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAGAAAAACAGAAATT
AAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
Found at i:77889804 original size:14 final size:14
Alignment explanation
Indices: 77889787--77889824 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
77889777 TGAAAAATAT
77889787 AAATTGAAAAGCAG
1 AAATTGAAAAGCAG
*
77889801 AAATCGAAAAGCAG
1 AAATTGAAAAGCAG
77889815 AAATTGAAAA
1 AAATTGAAAA
77889825 TACCTCAGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.61, C:0.08, G:0.18, T:0.13
Consensus pattern (14 bp):
AAATTGAAAAGCAG
Found at i:77889925 original size:73 final size:75
Alignment explanation
Indices: 77889806--77889973 Score: 241
Period size: 73 Copynumber: 2.3 Consensus size: 75
77889796 AGCAGAAATC
*
77889806 GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAACATGAGT
1 GAAAAGCATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAACATGAGT
77889871 TGA-TTT-TT
66 TGATTTTCTT
* * * * *
77889879 GAAAAGCATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGT
1 GAAAAGCATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAACATGAGT
77889944 TGATTTTCCTT
66 TGATTTT-CTT
* *
77889955 GAAAAGCATGAATTAAAAA
1 GAAAAGCATAAATTGAAAA
77889974 CATCAAAATA
Statistics
Matches: 83, Mismatches: 9, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
73 62 0.75
74 3 0.04
76 18 0.22
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (75 bp):
GAAAAGCATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAACATGAGT
TGATTTTCTT
Found at i:77902244 original size:18 final size:18
Alignment explanation
Indices: 77902221--77902257 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
77902211 TGTATATAAA
*
77902221 AAAATATACATAATATAT
1 AAAATACACATAATATAT
*
77902239 AAAATACATATAATATAT
1 AAAATACACATAATATAT
77902257 A
1 A
77902258 CGTATGTAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAATACACATAATATAT
Found at i:77907255 original size:27 final size:26
Alignment explanation
Indices: 77907177--77907256 Score: 76
Period size: 24 Copynumber: 3.1 Consensus size: 26
77907167 TTAAAATTTT
* *
77907177 TAAAAAATAAATTAAT-TCA-TATAA
1 TAAAAAATAATTTAATATAATTATAA
**
77907201 TATTAAATAATTTAATATAATTATAA
1 TAAAAAATAATTTAATATAATTATAA
*
77907227 TAAAAAATATATTTAAATATATTTA-AA
1 TAAAAAATA-ATTT-AATATAATTATAA
77907254 TAA
1 TAA
77907257 TTAATAAATT
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
24 13 0.29
25 2 0.04
26 12 0.27
27 9 0.20
28 9 0.20
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (26 bp):
TAAAAAATAATTTAATATAATTATAA
Found at i:77907339 original size:31 final size:31
Alignment explanation
Indices: 77907291--77907380 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 31
77907281 TGATAGATGA
*
77907291 AATATTTTAAAATTTTAAAATAAATTAAAAAT-
1 AATA-TTTAAAA-TTTAATATAAATTAAAAATG
* *
77907323 AATATTTAATAATTTAATAT-AA-TAATACTG
1 AATATTTAA-AATTTAATATAAATTAAAAATG
77907353 AATATTTAAACAATTTAATATAAATTAA
1 AATATTT-AA-AATTTAATATAAATTAA
77907381 TACAAAATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
29 5 0.10
30 9 0.18
31 24 0.49
32 8 0.16
33 3 0.06
ACGTcount: A:0.56, C:0.02, G:0.01, T:0.41
Consensus pattern (31 bp):
AATATTTAAAATTTAATATAAATTAAAAATG
Found at i:77908581 original size:14 final size:15
Alignment explanation
Indices: 77908562--77908590 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
77908552 GGATAATGGC
77908562 TTTTTTATTT-TTAT
1 TTTTTTATTTCTTAT
77908576 TTTTTTATTTCTTAT
1 TTTTTTATTTCTTAT
77908591 GTTTCTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTATTTCTTAT
Found at i:77910547 original size:107 final size:107
Alignment explanation
Indices: 77910394--77910607 Score: 329
Period size: 107 Copynumber: 2.0 Consensus size: 107
77910384 AAAAGATTCG
* *
77910394 TAATGTGTTCCATGTATCGATGTTACAACGTTGTCATTCTGATCCCTCTTACGTGATTTGTACAA
1 TAATGTGTTCCATGTATCGATGTTACAACGTTATCATTCTGATCCCTCTCACGTGATTTGTACAA
* * * *
77910459 ATGAAATAGAGTTGCAACTTGATTTTTCATACAGTGAAGAGC
66 ATGAAATAAAGTTACAACCTAATTTTTCATACAGTGAAGAGC
** *
77910501 TAATGTGTTCCATGTATCGATGTTACGTCGTTATCTTTCTGATCCCTCTCACGTGATTTGTACAA
1 TAATGTGTTCCATGTATCGATGTTACAACGTTATCATTCTGATCCCTCTCACGTGATTTGTACAA
* *
77910566 ATGAAATAAAGTTACAACCTAATTTTTCGTACAGTTAAGAGC
66 ATGAAATAAAGTTACAACCTAATTTTTCATACAGTGAAGAGC
77910608 CCATTTTAGT
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
107 96 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (107 bp):
TAATGTGTTCCATGTATCGATGTTACAACGTTATCATTCTGATCCCTCTCACGTGATTTGTACAA
ATGAAATAAAGTTACAACCTAATTTTTCATACAGTGAAGAGC
Found at i:77914114 original size:38 final size:38
Alignment explanation
Indices: 77914031--77914220 Score: 229
Period size: 38 Copynumber: 4.9 Consensus size: 38
77914021 AAATCCAGTC
* * * *
77914031 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
77914071 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* *
77914109 ACCAGCACGAAGCCTGCGGGATTTAACCTGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
77914147 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
77914185 TCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
77914221 CACATCAAAT
Statistics
Matches: 133, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
37 1 0.01
38 96 0.72
39 10 0.08
40 26 0.20
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.22
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:77917400 original size:55 final size:55
Alignment explanation
Indices: 77917327--77917435 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
77917317 AGTTATTGTT
*
77917327 GTACACGGGCAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTTAGTATC
1 GTACACGGGCAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATC
* * * *
77917382 GTACACGGGCAGGTCACACGGGCGTGTGCCATGGCTGTGTGTTGAAGTCAGTAT
1 GTACACGGGCAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTAT
77917436 TGCACATGGG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.19, C:0.23, G:0.35, T:0.23
Consensus pattern (55 bp):
GTACACGGGCAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAAAGTCAGTATC
Found at i:77931287 original size:21 final size:21
Alignment explanation
Indices: 77931263--77931324 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
77931253 AACAAACGCT
*
77931263 CATAAGAGCTAAACAGAAACC
1 CATAAGAGCTGAACAGAAACC
* * * *
77931284 CATAAGGGTTGAACAGAAGCT
1 CATAAGAGCTGAACAGAAACC
77931305 CATAAGAGCTGAACAGAAAC
1 CATAAGAGCTGAACAGAAAC
77931325 TCTTAAAAGT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.13
Consensus pattern (21 bp):
CATAAGAGCTGAACAGAAACC
Found at i:77931306 original size:42 final size:42
Alignment explanation
Indices: 77931251--77931448 Score: 161
Period size: 42 Copynumber: 4.7 Consensus size: 42
77931241 GCCCGAAGGC
* *
77931251 TGAACA-AACGCTCATAAGAGCTAAACAGAAACCCATAAGGGT
1 TGAACAGAA-GCTCATAAGAGCTAAACAGAAACACATAAGAGT
* * * *
77931293 TGAACAGAAGCTCATAAGAGCTGAACAGAAACTCTTAAAAGT
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAACACATAAGAGT
* * * **
77931335 TGAACTGAAGCTCGTAAAAGCTAAATGGAAACACATAAGAGT
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAACACATAAGAGT
* * * **
77931377 TAAACAAAAGCTCA-ATAGAGCTAAAC-GAAAACTCATATTAGT
1 TGAACAGAAGCTCATA-AGAGCTAAACAG-AAACACATAAGAGT
* * * *
77931419 TAAACAAAAGCTCGTGAGAGCTAAAC-GAAA
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAA
77931449 AGTAAATAAG
Statistics
Matches: 127, Mismatches: 25, Indels: 9
0.79 0.16 0.06
Matches are distributed among these distances:
41 5 0.04
42 120 0.94
43 2 0.02
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.18
Consensus pattern (42 bp):
TGAACAGAAGCTCATAAGAGCTAAACAGAAACACATAAGAGT
Found at i:77931338 original size:21 final size:21
Alignment explanation
Indices: 77931251--77931354 Score: 75
Period size: 21 Copynumber: 5.0 Consensus size: 21
77931241 GCCCGAAGGC
* *
77931251 TGAACA-AACGCTCATAAGAGC
1 TGAACAGAA-GCTCATAAAAGT
* * * **
77931272 TAAACAGAAACCCATAAGGGT
1 TGAACAGAAGCTCATAAAAGT
* *
77931293 TGAACAGAAGCTCATAAGAGC
1 TGAACAGAAGCTCATAAAAGT
* *
77931314 TGAACAGAAACTCTTAAAAGT
1 TGAACAGAAGCTCATAAAAGT
* *
77931335 TGAACTGAAGCTCGTAAAAG
1 TGAACAGAAGCTCATAAAAG
77931355 CTAAATGGAA
Statistics
Matches: 65, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
21 63 0.97
22 2 0.03
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.17
Consensus pattern (21 bp):
TGAACAGAAGCTCATAAAAGT
Found at i:77931396 original size:21 final size:20
Alignment explanation
Indices: 77931372--77931450 Score: 70
Period size: 21 Copynumber: 3.8 Consensus size: 20
77931362 GAAACACATA
77931372 AGAGTTAAACAAAAGCTCAAT
1 AGAGTTAAACAAAAGCTC-AT
*
77931393 AGAGCTAAACGAAAA-CTCAT
1 AGAGTTAAAC-AAAAGCTCAT
* *
77931413 ATTAGTTAAACAAAAGCTCGT
1 A-GAGTTAAACAAAAGCTCAT
*
77931434 GAGAGCTAAACGAAAAG
1 -AGAGTTAAAC-AAAAG
77931451 TAAATAAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
20 7 0.15
21 30 0.64
22 10 0.21
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (20 bp):
AGAGTTAAACAAAAGCTCAT
Found at i:77931430 original size:84 final size:84
Alignment explanation
Indices: 77931253--77931448 Score: 200
Period size: 84 Copynumber: 2.3 Consensus size: 84
77931243 CCGAAGGCTG
* * * * * * *
77931253 AACAAACGCTCATAAGAGCTAAACAGAAACCCATAAGGGTTGAACAGAAGCTCATAAGAGCTGAA
1 AACAAAAGCTCGTAAGAGCTAAACAGAAACACATAAGAGTTAAACAAAAGCTCATAAGAGCTAAA
* *
77931318 CAGAAACTCTTAAAAGTTG
66 CAGAAACTCATAAAAGTTA
** * **
77931337 AACTGAAGCTCGTAAAAGCTAAATGGAAACACATAAGAGTTAAACAAAAGCTCA-ATAGAGCTAA
1 AACAAAAGCTCGTAAGAGCTAAACAGAAACACATAAGAGTTAAACAAAAGCTCATA-AGAGCTAA
**
77931401 AC-GAAAACTCATATTAGTTA
65 ACAG-AAACTCATAAAAGTTA
*
77931421 AACAAAAGCTCGTGAGAGCTAAAC-GAAA
1 AACAAAAGCTCGTAAGAGCTAAACAGAAA
77931449 AGTAAATAAG
Statistics
Matches: 89, Mismatches: 21, Indels: 5
0.77 0.18 0.04
Matches are distributed among these distances:
83 6 0.07
84 83 0.93
ACGTcount: A:0.47, C:0.17, G:0.18, T:0.17
Consensus pattern (84 bp):
AACAAAAGCTCGTAAGAGCTAAACAGAAACACATAAGAGTTAAACAAAAGCTCATAAGAGCTAAA
CAGAAACTCATAAAAGTTA
Found at i:77934355 original size:93 final size:93
Alignment explanation
Indices: 77934238--77934549 Score: 511
Period size: 93 Copynumber: 3.4 Consensus size: 93
77934228 TTATTAACTG
*
77934238 CTAACTTGTAACATATTTGTATGAACTTGATTGTATATTTGTTGAACATGAATTAATAATATTGT
1 CTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAACATGAATTAATAATATTGT
*
77934303 ACATGAAACACATGGTTTAATTTGCTTA
66 ACATGAAACACATGATTTAATTTGCTTA
*
77934331 CTAACTTGTAACATATTTGCATGAACTTAATTGTATATTTGTTGAACATGAATTAATAATATTGT
1 CTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAACATGAATTAATAATATTGT
**
77934396 ACATGAAACACATGATTTAATTAACTT-
66 ACATGAAACACATGATTTAATTTGCTTA
*
77934423 TTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAACAAT-AATTAATAATATTG
1 CTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAAC-ATGAATTAATAATATTG
77934487 TACATGAAACACATGATTTAATTTGCTTA
65 TACATGAAACACATGATTTAATTTGCTTA
* * **
77934516 CTAACTTGTAACGTTTTTTTATGAACTTGATTGT
1 CTAACTTGTAACATATTTGCATGAACTTGATTGT
77934550 CACGTATATT
Statistics
Matches: 203, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
92 85 0.42
93 118 0.58
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.42
Consensus pattern (93 bp):
CTAACTTGTAACATATTTGCATGAACTTGATTGTATATTTGTTGAACATGAATTAATAATATTGT
ACATGAAACACATGATTTAATTTGCTTA
Found at i:77939598 original size:9 final size:9
Alignment explanation
Indices: 77939584--77939610 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
77939574 ATCTTAATGC
77939584 ACAATTCTA
1 ACAATTCTA
77939593 ACAATTCTA
1 ACAATTCTA
77939602 ACAATTCTA
1 ACAATTCTA
77939611 CTAAAATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (9 bp):
ACAATTCTA
Found at i:77942959 original size:2 final size:2
Alignment explanation
Indices: 77942954--77942993 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
77942944 CATATATATA
**
77942954 TG TG TG TG TG TG TG TG TG TG CA TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
77942994 AATGAAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.03, C:0.03, G:0.47, T:0.47
Consensus pattern (2 bp):
TG
Found at i:77943206 original size:55 final size:55
Alignment explanation
Indices: 77943145--77943256 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
77943135 ACTCGGTAAG
*
77943145 TTTACTTTCCGGTTATTCGAGATTACTAAGCATGTAAATGCTTACCCCTCTCTTT
1 TTTACTTTCCGGTTATTCGAGATCACTAAGCATGTAAATGCTTACCCCTCTCTTT
*
77943200 TTTACTTTCCGGTTATTCGAGCTCACTAAGCATGTAAATGCTTACCCCTCTCTTT
1 TTTACTTTCCGGTTATTCGAGATCACTAAGCATGTAAATGCTTACCCCTCTCTTT
77943255 TT
1 TT
77943257 CCCTGTTTTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42
Consensus pattern (55 bp):
TTTACTTTCCGGTTATTCGAGATCACTAAGCATGTAAATGCTTACCCCTCTCTTT
Found at i:77951137 original size:10 final size:10
Alignment explanation
Indices: 77951122--77951146 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
77951112 CAAATTTGAT
77951122 AAAAAAATAA
1 AAAAAAATAA
77951132 AAAAAAATAA
1 AAAAAAATAA
77951142 AAAAA
1 AAAAA
77951147 TGTTTTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:77952225 original size:45 final size:45
Alignment explanation
Indices: 77952159--77952359 Score: 275
Period size: 45 Copynumber: 4.5 Consensus size: 45
77952149 TGTACAGTAA
*
77952159 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTAGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCGTGAAATAC
*
77952204 TATTCGGGCCTTTGAGTCTAGCAGGCTACAATGC-CGAT-AAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCG-TGAAATAC
* *
77952248 TATTC-GGCCTTTGAGCCTAGTAGGCTACAATGCTGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCGTGAAATAC
* * * *
77952292 TATTCGGGCCTTTAAGCCCAGTAGGCTACAATGCCCGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCGTGAAATAC
*
77952337 TATTCGGG-CTTTCAAGCCTAGCA
1 TATTCGGGCCTTT-GAGCCTAGCA
77952360 AGCGAAATGC
Statistics
Matches: 140, Mismatches: 11, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
43 27 0.19
44 28 0.20
45 85 0.61
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCGTGAAATAC
Found at i:77952318 original size:88 final size:89
Alignment explanation
Indices: 77952159--77952359 Score: 289
Period size: 88 Copynumber: 2.2 Consensus size: 89
77952149 TGTACAGTAA
* * *
77952159 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTAGTGAAATACTATTCGGGCCTTTGAGTCTA
1 TATTC-GGCCTTTGAGCCTAGCAGGCTACAATGCTAGTGAAATACTATTCGGGCCTTTAAGCCCA
77952224 GCAGGCTACAATG-CCGAT-AAATAC
65 GCAGGCTACAATGCCCG-TGAAATAC
* *
77952248 TATTCGGCCTTTGAGCCTAGTAGGCTACAATGCTGGTGAAATACTATTCGGGCCTTTAAGCCCAG
1 TATTCGGCCTTTGAGCCTAGCAGGCTACAATGCTAGTGAAATACTATTCGGGCCTTTAAGCCCAG
*
77952313 TAGGCTACAATGCCCGTGAAATAC
66 CAGGCTACAATGCCCGTGAAATAC
* *
77952337 TATTCGGGCTTTCAAGCCTAGCA
1 TATTCGGCCTTT-GAGCCTAGCA
77952360 AGCGAAATGC
Statistics
Matches: 100, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
88 67 0.67
89 25 0.25
90 8 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (89 bp):
TATTCGGCCTTTGAGCCTAGCAGGCTACAATGCTAGTGAAATACTATTCGGGCCTTTAAGCCCAG
CAGGCTACAATGCCCGTGAAATAC
Found at i:77957564 original size:14 final size:14
Alignment explanation
Indices: 77957545--77957572 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77957535 TAAGGATTTG
77957545 ATAAATAAATAAAA
1 ATAAATAAATAAAA
77957559 ATAAATAAATAAAA
1 ATAAATAAATAAAA
77957573 TGTTTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
ATAAATAAATAAAA
Found at i:77958657 original size:45 final size:45
Alignment explanation
Indices: 77958593--77958706 Score: 185
Period size: 45 Copynumber: 2.5 Consensus size: 45
77958583 TGTACAGTAA
77958593 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* *
77958638 TATTCGGGCCTTTGAGCCTAGTAGGCTACAATGCTGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
*
77958683 TATTCGGG-CTTTCAAGCCTAGCAG
1 TATTCGGGCCTTT-GAGCCTAGCAG
77958707 ACGAAATACC
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
44 4 0.06
45 60 0.94
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
Found at i:77969717 original size:13 final size:13
Alignment explanation
Indices: 77969699--77969724 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77969689 TTGGATCCGT
77969699 ACCAAAACAATCA
1 ACCAAAACAATCA
77969712 ACCAAAACAATCA
1 ACCAAAACAATCA
77969725 TGAAACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:77970848 original size:44 final size:44
Alignment explanation
Indices: 77970757--77970886 Score: 140
Period size: 44 Copynumber: 3.0 Consensus size: 44
77970747 AACTCGTACA
** ** * *
77970757 ATGCCAACGCCCCAGACGTGGTTTTACATGT-AATCACATATCG
1 ATGCCAACATCCCAGACAAGGTCTTACACGTAAATCACATATCG
* * *
77970800 ATGCC-ACTATTCCAGATAAGGTCTTACACGTAAATCACAAATCG
1 ATGCCAAC-ATCCCAGACAAGGTCTTACACGTAAATCACATATCG
*
77970844 ATGCCAACATCCCAGACATGGTCTTACACG-AAATCACATATCG
1 ATGCCAACATCCCAGACAAGGTCTTACACGTAAATCACATATCG
77970887 GAACCCTATG
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 2 0.03
43 32 0.45
44 35 0.49
45 2 0.03
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.24
Consensus pattern (44 bp):
ATGCCAACATCCCAGACAAGGTCTTACACGTAAATCACATATCG
Found at i:77973954 original size:10 final size:10
Alignment explanation
Indices: 77973939--77973965 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
77973929 ATTAGATAAA
77973939 ATGTTATTAT
1 ATGTTATTAT
77973949 ATGTTATTAT
1 ATGTTATTAT
77973959 ATGTTAT
1 ATGTTAT
77973966 AATTTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
ATGTTATTAT
Found at i:77987069 original size:45 final size:45
Alignment explanation
Indices: 77987031--77987129 Score: 180
Period size: 45 Copynumber: 2.2 Consensus size: 45
77987021 AGGCTTGAAA
77987031 GCCCGAATAGTATTTCACCAGCATTGTAGCCTACTAGGCTCAAAG
1 GCCCGAATAGTATTTCACCAGCATTGTAGCCTACTAGGCTCAAAG
* *
77987076 GCCCGAATAGTATTTCACCGGCATTGTAGCCTGCTAGGCTCAAAG
1 GCCCGAATAGTATTTCACCAGCATTGTAGCCTACTAGGCTCAAAG
77987121 GCCCGAATA
1 GCCCGAATA
77987130 TTACTGTACA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.23
Consensus pattern (45 bp):
GCCCGAATAGTATTTCACCAGCATTGTAGCCTACTAGGCTCAAAG
Found at i:77988169 original size:14 final size:14
Alignment explanation
Indices: 77988150--77988177 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77988140 TATTAAAACA
77988150 TTTTATTTATTTAT
1 TTTTATTTATTTAT
77988164 TTTTATTTATTTAT
1 TTTTATTTATTTAT
77988178 CAAATCCTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTATTTATTTAT
Found at i:77991688 original size:101 final size:101
Alignment explanation
Indices: 77991513--77991715 Score: 406
Period size: 101 Copynumber: 2.0 Consensus size: 101
77991503 TGTCATCTAT
77991513 AAACACGACTACAAACCAATCCAAATACTGTCTGAAAATCTGATTCATTAAATCCATGAAAACAG
1 AAACACGACTACAAACCAATCCAAATACTGTCTGAAAATCTGATTCATTAAATCCATGAAAACAG
77991578 CAAGGGCATTAGTGAGCCCAAACAGCATCACTAGGA
66 CAAGGGCATTAGTGAGCCCAAACAGCATCACTAGGA
77991614 AAACACGACTACAAACCAATCCAAATACTGTCTGAAAATCTGATTCATTAAATCCATGAAAACAG
1 AAACACGACTACAAACCAATCCAAATACTGTCTGAAAATCTGATTCATTAAATCCATGAAAACAG
77991679 CAAGGGCATTAGTGAGCCCAAACAGCATCACTAGGA
66 CAAGGGCATTAGTGAGCCCAAACAGCATCACTAGGA
77991715 A
1 A
77991716 CTCATAATGT
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.43, C:0.24, G:0.15, T:0.19
Consensus pattern (101 bp):
AAACACGACTACAAACCAATCCAAATACTGTCTGAAAATCTGATTCATTAAATCCATGAAAACAG
CAAGGGCATTAGTGAGCCCAAACAGCATCACTAGGA
Found at i:77994962 original size:45 final size:44
Alignment explanation
Indices: 77994912--77995100 Score: 279
Period size: 45 Copynumber: 4.2 Consensus size: 44
77994902 AGGCTTGAAA
* * *
77994912 GCCCGAATAGTATTTCACGGGCATTGTAGCCTACTGGGCTTAAAG
1 GCCCGAATAGTATTTCAC-AGCATTGTAGCCTACTAGGCTCAAAG
77994957 GCCCGAATAGTATTTCACCAGCATTGTAGCCTACTAGGCTCAAAG
1 GCCCGAATAGTATTTCA-CAGCATTGTAGCCTACTAGGCTCAAAG
* * *
77995002 GCCCGAATAGTATTTCATCGGCATTGTAGCCTGCTAGACTCAAAG
1 GCCCGAATAGTATTTCA-CAGCATTGTAGCCTACTAGGCTCAAAG
*
77995047 GCCCGAATAGTATTTCACTAGCATTGTAGCCTGCTAGGCTCAAAG
1 GCCCGAATAGTATTTCAC-AGCATTGTAGCCTACTAGGCTCAAAG
77995092 GCCCGAATA
1 GCCCGAATA
77995101 TTACTGTACA
Statistics
Matches: 133, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
44 1 0.01
45 131 0.98
46 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (44 bp):
GCCCGAATAGTATTTCACAGCATTGTAGCCTACTAGGCTCAAAG
Found at i:77995006 original size:90 final size:90
Alignment explanation
Indices: 77994912--77995100 Score: 308
Period size: 90 Copynumber: 2.1 Consensus size: 90
77994902 AGGCTTGAAA
* * *
77994912 GCCCGAATAGTATTTCA-CGGGCATTGTAGCCTACTGGGCTTAAAGGCCCGAATAGTATTTCACC
1 GCCCGAATAGTATTTCATC-GGCATTGTAGCCTACTAGACTCAAAGGCCCGAATAGTATTTCACC
77994976 AGCATTGTAGCCTACTAGGCTCAAAG
65 AGCATTGTAGCCTACTAGGCTCAAAG
* *
77995002 GCCCGAATAGTATTTCATCGGCATTGTAGCCTGCTAGACTCAAAGGCCCGAATAGTATTTCACTA
1 GCCCGAATAGTATTTCATCGGCATTGTAGCCTACTAGACTCAAAGGCCCGAATAGTATTTCACCA
*
77995067 GCATTGTAGCCTGCTAGGCTCAAAG
66 GCATTGTAGCCTACTAGGCTCAAAG
77995092 GCCCGAATA
1 GCCCGAATA
77995101 TTACTGTACA
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
90 91 0.99
91 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (90 bp):
GCCCGAATAGTATTTCATCGGCATTGTAGCCTACTAGACTCAAAGGCCCGAATAGTATTTCACCA
GCATTGTAGCCTACTAGGCTCAAAG
Found at i:77996139 original size:10 final size:10
Alignment explanation
Indices: 77996126--77996150 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
77996116 TATTAAAACA
77996126 TTTTTTTATT
1 TTTTTTTATT
77996136 TTTTTTTATT
1 TTTTTTTATT
77996146 TTTTT
1 TTTTT
77996151 ATCAAATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:78004079 original size:55 final size:55
Alignment explanation
Indices: 78004017--78004128 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
78004007 TAAAACAGGG
*
78004017 AAAAAGAGAGGGGTAAGCATTTACATGCTTAGTGAGCTCGAATAACCGGAAAGTA
1 AAAAAGAGAGGGGTAAGCATTTACATGCTTAGTAAGCTCGAATAACCGGAAAGTA
*
78004072 AAAAAGAGAGGGGTAAGCATTTACATGCTTAGTAATCTCGAATAACCGGAAAGTA
1 AAAAAGAGAGGGGTAAGCATTTACATGCTTAGTAAGCTCGAATAACCGGAAAGTA
78004127 AA
1 AA
78004129 CTTACCGAGT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (55 bp):
AAAAAGAGAGGGGTAAGCATTTACATGCTTAGTAAGCTCGAATAACCGGAAAGTA
Found at i:78004287 original size:2 final size:2
Alignment explanation
Indices: 78004280--78004319 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
78004270 ATATTTCATT
**
78004280 CA CA CA CA CA CA CA CA CA TG CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
78004320 TATATATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.47, G:0.03, T:0.03
Consensus pattern (2 bp):
CA
Found at i:78007676 original size:9 final size:9
Alignment explanation
Indices: 78007662--78007688 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
78007652 TCTATTTTAG
78007662 TAGAATTGT
1 TAGAATTGT
78007671 TAGAATTGT
1 TAGAATTGT
78007680 TAGAATTGT
1 TAGAATTGT
78007689 GCATTAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (9 bp):
TAGAATTGT
Found at i:78007845 original size:46 final size:49
Alignment explanation
Indices: 78007748--78007845 Score: 123
Period size: 46 Copynumber: 2.1 Consensus size: 49
78007738 ATTTGTATAG
* * *
78007748 TTTTAAGTATACATTGATCATTATATTAGACTTGTGTTGAATGATTAGA
1 TTTTAAATATACATTGAACATTATATTAGACTTGTGTTGAATAATTAGA
*
78007797 TTTTAAATATAACATTGAACATTATA-T-G-TTTGT-TTGAATAATTAGA
1 TTTTAAATAT-ACATTGAACATTATATTAGACTTGTGTTGAATAATTAGA
78007843 TTT
1 TTT
78007846 GAGTTAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
46 15 0.34
47 4 0.09
48 1 0.02
49 10 0.23
50 14 0.32
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (49 bp):
TTTTAAATATACATTGAACATTATATTAGACTTGTGTTGAATAATTAGA
Found at i:78011414 original size:10 final size:10
Alignment explanation
Indices: 78011399--78011425 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
78011389 ATTAGATAAA
78011399 ATGTTATTAT
1 ATGTTATTAT
78011409 ATGTTATTAT
1 ATGTTATTAT
78011419 ATGTTAT
1 ATGTTAT
78011426 AATTTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
ATGTTATTAT
Found at i:78019498 original size:10 final size:10
Alignment explanation
Indices: 78019483--78019509 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
78019473 ATTAGATAAA
78019483 ATGTTATTAT
1 ATGTTATTAT
78019493 ATGTTATTAT
1 ATGTTATTAT
78019503 ATGTTAT
1 ATGTTAT
78019510 AATTTATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (10 bp):
ATGTTATTAT
Found at i:78024631 original size:15 final size:16
Alignment explanation
Indices: 78024602--78024636 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
78024592 GTTTTCTTTT
78024602 TCATTTAATTAAATTG
1 TCATTTAATTAAATTG
*
78024618 TCATTTAA-TAAATTT
1 TCATTTAATTAAATTG
78024633 TCAT
1 TCAT
78024637 CTTTCCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (16 bp):
TCATTTAATTAAATTG
Found at i:78026157 original size:25 final size:25
Alignment explanation
Indices: 78026123--78026172 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
78026113 CTTTTAAATA
78026123 ATATTCAAACTCTCTTTTCTTCAAT
1 ATATTCAAACTCTCTTTTCTTCAAT
78026148 ATATTCAAACTCTCTTTTCTTCAAT
1 ATATTCAAACTCTCTTTTCTTCAAT
78026173 CTTTTATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (25 bp):
ATATTCAAACTCTCTTTTCTTCAAT
Found at i:78033256 original size:27 final size:27
Alignment explanation
Indices: 78033196--78033248 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
78033186 TTAACATCCT
* *
78033196 GACCATTTGGATTATTATTGAGACCAA
1 GACCATTTGGATTATCATTAAGACCAA
*
78033223 GACCATTTGGATTATCGTTAAGACCA
1 GACCATTTGGATTATCATTAAGACCA
78033249 GGATCATTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (27 bp):
GACCATTTGGATTATCATTAAGACCAA
Found at i:78037992 original size:84 final size:84
Alignment explanation
Indices: 78037851--78038018 Score: 318
Period size: 84 Copynumber: 2.0 Consensus size: 84
78037841 TCTAGTATAC
78037851 ATAATTAAAAATGCCTATAAGAATATGGTAAATGAATCGAAATTTTTGGTTGGCACTTGAATAAA
1 ATAATTAAAAATGCCTATAAGAATATGGTAAATGAATCGAAATTTTTGGTTGGCACTTGAATAAA
78037916 ATTGTTCATTAATTAATGT
66 ATTGTTCATTAATTAATGT
* *
78037935 ATAATTAAAGATGCTTATAAGAATATGGTAAATGAATCGAAATTTTTGGTTGGCACTTGAATAAA
1 ATAATTAAAAATGCCTATAAGAATATGGTAAATGAATCGAAATTTTTGGTTGGCACTTGAATAAA
78038000 ATTGTTCATTAATTAATGT
66 ATTGTTCATTAATTAATGT
78038019 GTGTATGCGA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (84 bp):
ATAATTAAAAATGCCTATAAGAATATGGTAAATGAATCGAAATTTTTGGTTGGCACTTGAATAAA
ATTGTTCATTAATTAATGT
Found at i:78038236 original size:40 final size:40
Alignment explanation
Indices: 78038181--78038288 Score: 207
Period size: 40 Copynumber: 2.7 Consensus size: 40
78038171 GGAAAAAAAA
78038181 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGGGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGGGGGTTAT
*
78038221 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGGGGGTTAT
78038261 TATAACCGGGTTAAGTCCCGAAGGCATT
1 TATAACCGGGTTAAGTCCCGAAGGCATT
78038289 TGTGCTGGTT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.28
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGGGGGTTAT
Found at i:78040594 original size:30 final size:31
Alignment explanation
Indices: 78040567--78040628 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
78040557 AACAATTTGG
* *
78040567 TGACTTGAA-TAAAACTTTTAATTAATTTAA
1 TGACTTAAATTAAAACTTTTAAATAATTTAA
*
78040597 TGACTTAAATTAAAATTTTTAAATAATTTAA
1 TGACTTAAATTAAAACTTTTAAATAATTTAA
78040628 T
1 T
78040629 AATCATTTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 8 0.29
31 20 0.71
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (31 bp):
TGACTTAAATTAAAACTTTTAAATAATTTAA
Found at i:78048564 original size:12 final size:12
Alignment explanation
Indices: 78048547--78048578 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
78048537 TAAATTTTTA
78048547 AGCATGAACCCT
1 AGCATGAACCCT
78048559 AGCATGAACCCT
1 AGCATGAACCCT
78048571 AGCATGAA
1 AGCATGAA
78048579 ATATGGGTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.38, C:0.28, G:0.19, T:0.16
Consensus pattern (12 bp):
AGCATGAACCCT
Found at i:78055219 original size:12 final size:12
Alignment explanation
Indices: 78055202--78055226 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
78055192 GTAATGGTTG
78055202 ACTACCTTTGAA
1 ACTACCTTTGAA
78055214 ACTACCTTTGAA
1 ACTACCTTTGAA
78055226 A
1 A
78055227 TAGATGTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (12 bp):
ACTACCTTTGAA
Found at i:78057657 original size:103 final size:103
Alignment explanation
Indices: 78057478--78057683 Score: 385
Period size: 103 Copynumber: 2.0 Consensus size: 103
78057468 CTTTAGTAAG
*
78057478 AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTTAGGCAATATTTTGAGGGAGT
1 AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTAAGGCAATATTTTGAGGGAGT
*
78057543 GAATAAGCGTTTCTCTTTTAGCAGTGCACCTTGGACAA
66 GAATAAGCGTTTCTCTTTTAGCACTGCACCTTGGACAA
*
78057581 AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTAAGGCAATATTTTGAGGGTGT
1 AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTAAGGCAATATTTTGAGGGAGT
78057646 GAATAAGCGTTTCTCTTTTAGCACTGCACCTTGGACAA
66 GAATAAGCGTTTCTCTTTTAGCACTGCACCTTGGACAA
78057684 TCCTGTTGAA
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 100 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (103 bp):
AAGCCTGATGTCTATGCCACTAATGGAAAGGAGGCACTCGCTGTAAGGCAATATTTTGAGGGAGT
GAATAAGCGTTTCTCTTTTAGCACTGCACCTTGGACAA
Found at i:78060614 original size:24 final size:24
Alignment explanation
Indices: 78060583--78060653 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
78060573 AGACCCCTTA
78060583 AGCTTGGTTTGAACGGTTCACTCG
1 AGCTTGGTTTGAACGGTTCACTCG
78060607 AGCTTGGTTTGAACGGTTCACTCG
1 AGCTTGGTTTGAACGGTTCACTCG
* *
78060631 ATCTTGGTTTAAACGGTTCACTC
1 AGCTTGGTTTGAACGGTTCACTC
78060654 AAAAAGAGGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.35
Consensus pattern (24 bp):
AGCTTGGTTTGAACGGTTCACTCG
Found at i:78065876 original size:40 final size:40
Alignment explanation
Indices: 78065819--78066036 Score: 287
Period size: 40 Copynumber: 5.5 Consensus size: 40
78065809 CGGATGATAA
* *
78065819 CCGGGCTAAGTCCCGAAGGCGTTTGTGCAAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
78065859 TCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* *
78065899 CCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTATTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* **
78065939 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * *
78065979 CCGAGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTT
**
78066019 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
78066037 TACTTGATTG
Statistics
Matches: 157, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
39 15 0.10
40 142 0.90
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Done.