Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 231 of 345
Found at i:78483758 original size:4 final size:4
Alignment explanation
Indices: 78483749--78483775 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
78483739 TGCCCTAATT
78483749 TCAA TCAA TCAA TCAA TCAA TCAA TCA
1 TCAA TCAA TCAA TCAA TCAA TCAA TCA
78483776 TTCATCCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
TCAA
Found at i:78486677 original size:16 final size:15
Alignment explanation
Indices: 78486656--78486685 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
78486646 GAATAGAGTA
78486656 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
78486672 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
78486686 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:78490119 original size:15 final size:15
Alignment explanation
Indices: 78490099--78490149 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
78490089 TATGATATTG
78490099 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
78490114 TATCTTGGATTTCTC
1 TATCTTGGATTTCTT
*
78490129 TATCTTGGACTTCTT
1 TATCTTGGATTTCTT
*
78490144 AATCTT
1 TATCTT
78490150 AGTTTTCTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.16, C:0.18, G:0.12, T:0.55
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:78490157 original size:30 final size:30
Alignment explanation
Indices: 78490099--78490157 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
78490089 TATGATATTG
* * *
78490099 TATCTTGGATTTCTTTATCTTGGATTTCTC
1 TATCTTGGACTTCTTAATCTTAGATTTCTC
*
78490129 TATCTTGGACTTCTTAATCTTAGTTTTCT
1 TATCTTGGACTTCTTAATCTTAGATTTCT
78490158 TATTATCTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.15, C:0.17, G:0.12, T:0.56
Consensus pattern (30 bp):
TATCTTGGACTTCTTAATCTTAGATTTCTC
Found at i:78492925 original size:52 final size:50
Alignment explanation
Indices: 78492843--78492981 Score: 152
Period size: 50 Copynumber: 2.7 Consensus size: 50
78492833 ATTGTGAGAA
* * * ** *
78492843 CACATGTGTAGTATTATGTACTGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTACAAGATAG--TTAGGT
* * *
78492895 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTACAAGATAGTTAGGT
** *
78492945 TGCATGTGTAGTACTATGTGCAGGCTACTATGCGTAC
1 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTAC
78492982 CCGACAACTT
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 38 0.52
52 35 0.48
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (50 bp):
CACATGTGTAGTACTATGTGCAGGCTACTATGTGTACAAGATAGTTAGGT
Found at i:78493023 original size:51 final size:50
Alignment explanation
Indices: 78492889--78493034 Score: 157
Period size: 50 Copynumber: 2.9 Consensus size: 50
78492879 TAAGATGGTT
* * * * *
78492889 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAC
* ** * *
78492939 TTAGGTTGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCCGACAAC
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA-AAC
* * * *
78492990 TTCGATCACATGTGTAGTATTAAGCGCAGGCTACTGTGCGTACCA
1 TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
78493035 AATAGCTTCG
Statistics
Matches: 78, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
50 41 0.53
51 37 0.47
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (50 bp):
TTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAC
Found at i:78493044 original size:51 final size:51
Alignment explanation
Indices: 78492892--78493050 Score: 185
Period size: 51 Copynumber: 3.1 Consensus size: 51
78492882 GATGGTTTTA
* * *
78492892 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG-TTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTC
** * * * *
78492942 GGTTGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCCGACAACTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTC
* * * * *
78492993 GATCACATGTGTAGTATTAAGCGCAGGCTACTGTGCGTACCAAATAGCTTC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTC
78493044 GGTCACA
1 GGTCACA
78493051 AGGGTGGTAA
Statistics
Matches: 87, Mismatches: 21, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
50 39 0.45
51 48 0.55
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTC
Found at i:78497800 original size:42 final size:42
Alignment explanation
Indices: 78497735--78498205 Score: 599
Period size: 42 Copynumber: 11.3 Consensus size: 42
78497725 AAGGAAAACA
**
78497735 TTCATTGCATTTAGAGGAATAGGTGTGGAGGGT-CATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGA-GGTCCATTTACTT
* * *
78497777 TTCATTACACTTAGAGGCCTAGGTGTGGAGGTCTATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
78497819 TTCATTGTATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * *
78497861 TTTATTGTATTTAGAGG-CTCAAGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCT-AGGTGTGGAGGTCCATTTACTT
* * *
78497903 TTCATTGCATTTAGAGGCCTAGGCGTAGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
** *
78497945 TT-ATTGCATTTAGAAACCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
78497986 TTCATTGCATTTAGAGGCCAAGGTGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * * *
78498028 TTTATTGCATTTAAAGGCCTAGGTTTGGAGTTTCATTTA-TT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* ** *
78498069 TTCATTACATTTAGAGGCCCGGGTGTGGAGGTCCATTGACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* *
78498111 TTCATTGCATCTAAAGGCCTAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
* * * *
78498153 TTCATTGCATTTAAAGGCCCAAGTGTGGATGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
78498195 TTCATTGCATT
1 TTCATTGCATT
78498206 GTATATGAAG
Statistics
Matches: 371, Mismatches: 53, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
41 71 0.19
42 298 0.80
43 2 0.01
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
Found at i:78498015 original size:125 final size:126
Alignment explanation
Indices: 78497735--78498205 Score: 630
Period size: 125 Copynumber: 3.8 Consensus size: 126
78497725 AAGGAAAACA
* * * *
78497735 TTCATTGCATTTAGAGG-AATAGGTGTGGAGGGT-CATTTACTTTTCATTACACTTAGAGGCCTA
1 TTCATTGCATTTAGAGGCCA-AGGTGTGGA-GGTCCATTTACTTTTCATTGCATTTAAAGGCCTA
*
78497798 GGTGTGGAGG-TCTATTTACTTTTCATTGTATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
64 GGTGTGGAGGTTC-ATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
78497861 TTTATTGTATTTAGAGGCTCAA-GTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCTAG
1 TTCATTGCATTTAGAGGC-CAAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCTAG
* * **
78497925 GCGTAGAGGTTCATTTACTTTT-ATTGCATTTAGAAACCCAGGTGTGGAGGTCCATTTACTT
65 GTGTGGAGGTTCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
78497986 TTCATTGCATTTAGAGGCCAAGGTGTGGAGGTTCATTTACTTTTTATTGCATTTAAAGGCCTAGG
1 TTCATTGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCTAGG
* * * * *
78498051 TTTGGAGTTTCATTTA-TTTTCATTACATTTAGAGGCCCGGGTGTGGAGGTCCATTGACTT
66 TGTGGAGGTTCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
78498111 TTCATTGCATCTAAAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAAG
1 TTCATTGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCTAGG
* *
78498176 TGTGGATGTCCATTTACTTTTCATTGCATT
66 TGTGGAGGTTCATTTACTTTTCATTGCATT
78498206 GTATATGAAG
Statistics
Matches: 302, Mismatches: 36, Indels: 14
0.86 0.10 0.04
Matches are distributed among these distances:
124 7 0.02
125 211 0.70
126 80 0.26
127 3 0.01
128 1 0.00
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (126 bp):
TTCATTGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCTAGG
TGTGGAGGTTCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:78498204 original size:167 final size:167
Alignment explanation
Indices: 78497735--78498205 Score: 585
Period size: 167 Copynumber: 2.8 Consensus size: 167
78497725 AAGGAAAACA
* *** * *
78497735 TTCATTGCATTTAGAGGAATAGGTGTGGAGGGTCATTTACTTTTCATTACA-CTTAGAGGCCTAG
1 TTCATTACATTTAGAGGCCCAGGTGTGGA-GGTCATTTACTTTTCATTGCATC-TAAAGGCCTAG
* * *
78497799 GTGTGGAGGTCTATTTACTTTTCATTGTATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTT
64 GTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTT
* *
78497864 ATTGTATTTAGAGGCTCAAGTGTGGAGGTCCATTTACTT
129 ATTGCATTTAAAGGCTCAAGTGTGGAGGTCCATTTACTT
* * * * * * *
78497903 TTCATTGCATTTAGAGGCCTAGGCGTAGAGGTTCATTTACTTTT-ATTGCATTTAGAA-ACCCAG
1 TTCATTACATTTAGAGGCCCAGGTGTGGAGG-TCATTTACTTTTCATTGCATCTA-AAGGCCTAG
*
78497966 GTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGG-CCAAGGTGTGGAGGTTCATTTACTTTT
64 GTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAA-GTGTGGAGGTCCATTTACTTTT
* * * *
78498030 TATTGCATTTAAAGGC-CTAGGTTTGGAGTTTCATTTA-TT
128 TATTGCATTTAAAGGCTC-AAGTGTGGAGGTCCATTTACTT
* *
78498069 TTCATTACATTTAGAGGCCCGGGTGTGGAGGTCCATTGACTTTTCATTGCATCTAAAGGCCTAGG
1 TTCATTACATTTAGAGGCCCAGGTGTGGAGGT-CATTTACTTTTCATTGCATCTAAAGGCCTAGG
* * *
78498134 TGTGGAGGTCCATTTACTTTTCATTGCATTTAAAGGCCCAAGTGTGGATGTCCATTTACTTTTCA
65 TGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTTA
78498199 TTGCATT
130 TTGCATT
78498206 GTATATGAAG
Statistics
Matches: 262, Mismatches: 32, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
165 1 0.00
166 44 0.17
167 175 0.67
168 42 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (167 bp):
TTCATTACATTTAGAGGCCCAGGTGTGGAGGTCATTTACTTTTCATTGCATCTAAAGGCCTAGGT
GTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAAGTGTGGAGGTCCATTTACTTTTTAT
TGCATTTAAAGGCTCAAGTGTGGAGGTCCATTTACTT
Found at i:78501266 original size:29 final size:28
Alignment explanation
Indices: 78501233--78501299 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 28
78501223 TTTTGTAATT
78501233 TTGATGTTTTTGGAAAATTTGAAAGTTAA
1 TTGAT-TTTTTGGAAAATTTGAAAGTTAA
* *
78501262 TTGATTTATGTGGAAAATTTGAAAGTTAG
1 TTGATTT-TTTGGAAAATTTGAAAGTTAA
78501291 TTGATTTTT
1 TTGATTTTT
78501300 AGATGTGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (28 bp):
TTGATTTTTTGGAAAATTTGAAAGTTAA
Found at i:78501864 original size:27 final size:27
Alignment explanation
Indices: 78501831--78501882 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
78501821 GTATGCGTAT
78501831 GATTG-AATAGTATATTGAATTGGAATG
1 GATTGAAATAGTATATTG-ATTGGAATG
*
78501858 GATTGAAATTGTATATTGATTGGAA
1 GATTGAAATAGTATATTGATTGGAA
78501883 ATTGAATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.37, C:0.00, G:0.25, T:0.38
Consensus pattern (27 bp):
GATTGAAATAGTATATTGATTGGAATG
Found at i:78501890 original size:23 final size:24
Alignment explanation
Indices: 78501831--78501899 Score: 68
Period size: 27 Copynumber: 2.8 Consensus size: 24
78501821 GTATGCGTAT
*
78501831 GATTGAATAGTATATTGAATTGGAA
1 GATTGAATTGTATATTG-ATTGGAA
78501856 TGGATTGAAATTGTATATTGATTGGAA
1 --GATTG-AATTGTATATTGATTGGAA
* *
78501883 -ATTGAATTATGTATTGA
1 GATTGAATTGTATATTGA
78501900 AATACCGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
23 11 0.29
24 4 0.11
27 12 0.32
28 11 0.29
ACGTcount: A:0.36, C:0.00, G:0.23, T:0.41
Consensus pattern (24 bp):
GATTGAATTGTATATTGATTGGAA
Found at i:78505156 original size:61 final size:62
Alignment explanation
Indices: 78505014--78505156 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 62
78505004 ACAAGCTTTA
*
78505014 CTGGGCCTAAGCCCTATT-CAGAAATCAGAGTTAACTGGGCATTAGCCCATATCAATAATAAT
1 CTGGGCCT-AGCCCTATTACAGAAATCAGAGTTAACTGGGCACTAGCCCATATCAATAATAAT
* * * *
78505076 CTGGGCCATAGCCC-CTTACAG-TATCAGAG-TATACTGGGC-CTAGCTCATATCAGT-ATCAAT
1 CTGGGCC-TAGCCCTATTACAGAAATCAGAGTTA-ACTGGGCACTAGCCCATATCAATAAT-AAT
78505136 CTGGGCCGTAGCCCTATTACA
1 CTGGGCC-TAGCCCTATTACA
78505157 AGTCGAGATA
Statistics
Matches: 69, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
59 2 0.03
60 30 0.43
61 21 0.30
62 15 0.22
63 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (62 bp):
CTGGGCCTAGCCCTATTACAGAAATCAGAGTTAACTGGGCACTAGCCCATATCAATAATAAT
Found at i:78509173 original size:60 final size:62
Alignment explanation
Indices: 78509067--78509186 Score: 174
Period size: 60 Copynumber: 2.0 Consensus size: 62
78509057 CCATTCAAAA
*
78509067 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCCT-TTACAGT
1 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATAACAATCTAGGCCATAGCCCTATTACAGT
* * *
78509128 ATCAGAG-TATACTGGGCC-TAGCTCATATCAGTATCAATCTAGGCCATAGCCCTATTACA
1 ATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATAACAATCTAGGCCATAGCCCTATTACA
78509187 AGTCGAGATA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
60 33 0.62
61 20 0.38
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (62 bp):
ATCAGAGTTAACTGGGCCTTAGCCCATATCAATAACAATCTAGGCCATAGCCCTATTACAGT
Found at i:78509216 original size:60 final size:59
Alignment explanation
Indices: 78509067--78509218 Score: 150
Period size: 60 Copynumber: 2.5 Consensus size: 59
78509057 CCATTCAAAA
* *
78509067 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATAACAATCTGGGCCATAGCCCTTTACAG
1 ATCAGAGTAT-ACTGGGCCTT-GCCTATATCAATAACAATCTAGGCCATAGCCCTTTACAG
* * *
78509127 TATCAGAGTATACTGGGCCTAG-CTCATATCAGTATCAATCTAGGCCATAGCCCTATTACA-
1 -ATCAGAGTATACTGGGCCTTGCCT-ATATCAATAACAATCTAGGCCATAGCCCT-TTACAG
**
78509187 AGTC-GAGATATTTTGGGCCTTGCCTATATCAA
1 A-TCAGAG-TATACTGGGCCTTGCCTATATCAA
78509219 CACAGTTGGC
Statistics
Matches: 76, Mismatches: 9, Indels: 13
0.78 0.09 0.13
Matches are distributed among these distances:
59 5 0.07
60 46 0.61
61 24 0.32
62 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (59 bp):
ATCAGAGTATACTGGGCCTTGCCTATATCAATAACAATCTAGGCCATAGCCCTTTACAG
Found at i:78513135 original size:22 final size:22
Alignment explanation
Indices: 78513113--78513184 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
78513103 CTATTTCGAA
78513113 AAAAAGTTTTGATTTTTAAGAA-
1 AAAAAGTTTTGATTTTTAA-AAG
*
78513135 AAATAGTGATTT-ATTTTTAAAAG
1 AAAAAGT--TTTGATTTTTAAAAG
* * *
78513158 AGAAAGTTTAGATTTTTAAAAT
1 AAAAAGTTTTGATTTTTAAAAG
78513180 AAAAA
1 AAAAA
78513185 TCTGGTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
21 2 0.05
22 22 0.55
23 13 0.32
24 3 0.08
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (22 bp):
AAAAAGTTTTGATTTTTAAAAG
Found at i:78514219 original size:25 final size:26
Alignment explanation
Indices: 78514191--78514246 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
78514181 GTTAGTTAAG
*
78514191 TAAG-TGTTACATTTTAATGACACCA
1 TAAGTTGTTACATTTTAATGAAACCA
* *
78514216 TAAGGTTTTTACATTTTAATGAAACTA
1 TAA-GTTGTTACATTTTAATGAAACCA
78514243 TAAG
1 TAAG
78514247 GGTTTTACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 3 0.12
26 2 0.08
27 21 0.81
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TAAGTTGTTACATTTTAATGAAACCA
Found at i:78514227 original size:27 final size:27
Alignment explanation
Indices: 78514197--78514258 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
78514187 TAAGTAAGTG
* *
78514197 TTACATTTTAATGACACCATAAGGTTT
1 TTACATTTTAATGAAACCATAAGGGTT
*
78514224 TTACATTTTAATGAAACTATAAGGGTT
1 TTACATTTTAATGAAACCATAAGGGTT
78514251 TTACATTT
1 TTACATTT
78514259 GAATTTAGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (27 bp):
TTACATTTTAATGAAACCATAAGGGTT
Found at i:78515566 original size:29 final size:29
Alignment explanation
Indices: 78515533--78515591 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
78515523 TCTACCTTGA
*
78515533 CACAAATTCTCAACAAACAAGTTCTTCAC
1 CACAAACTCTCAACAAACAAGTTCTTCAC
78515562 CACAAACTCTCAACAAACAAGTTCTTCAC
1 CACAAACTCTCAACAAACAAGTTCTTCAC
78515591 C
1 C
78515592 TCTTCCATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.41, C:0.34, G:0.03, T:0.22
Consensus pattern (29 bp):
CACAAACTCTCAACAAACAAGTTCTTCAC
Found at i:78515902 original size:17 final size:17
Alignment explanation
Indices: 78515880--78515913 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
78515870 TACTAAGTTC
78515880 ACCAAATAGTTTCTTTA
1 ACCAAATAGTTTCTTTA
78515897 ACCAAATAGTTTCTTTA
1 ACCAAATAGTTTCTTTA
78515914 CAAGCTTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (17 bp):
ACCAAATAGTTTCTTTA
Found at i:78519816 original size:28 final size:28
Alignment explanation
Indices: 78519741--78519817 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
78519731 TGAGTGTGAT
* * *
78519741 TTGGGCCTAATGGGCCACATAAATGTGA
1 TTGGGCCTAATGGGCCATATAAAAGAGA
*
78519769 ATGGGCCTAATGGGCCATATAAAAGAGA
1 TTGGGCCTAATGGGCCATATAAAAGAGA
* *
78519797 TTGGGCCTAGTGGGCTATATA
1 TTGGGCCTAATGGGCCATATA
78519818 TATATAGGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATAAAAGAGA
Found at i:78526312 original size:28 final size:28
Alignment explanation
Indices: 78526252--78526356 Score: 115
Period size: 28 Copynumber: 3.8 Consensus size: 28
78526242 TAAATGTAAT
* *
78526252 TTGGGCCTAGT-GGCCATATGAATATGA
1 TTGGGCCTAATGGGCCATATAAATATGA
*
78526279 TTTGGGCCTAATGGGCCACATAAATATGA
1 -TTGGGCCTAATGGGCCATATAAATATGA
* * *
78526308 ATGGGCCTAATGGCCCATATGAAAGA-GA
1 TTGGGCCTAATGGGCCATAT-AAATATGA
*
78526336 TTGGGCCTAGTGGGCCATATA
1 TTGGGCCTAATGGGCCATATA
78526357 TATAGGTATG
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
27 1 0.02
28 46 0.71
29 18 0.28
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATAAATATGA
Found at i:78526368 original size:28 final size:29
Alignment explanation
Indices: 78526253--78526368 Score: 100
Period size: 28 Copynumber: 4.1 Consensus size: 29
78526243 AAATGTAATT
* *
78526253 TGGGCCTAGT-GGCCATATG-AATATGATT
1 TGGGCCTAATGGGCCATATGAAATA-GATA
*
78526281 TGGGCCTAATGGGCCACAT-AAATATGA-A
1 TGGGCCTAATGGGCCATATGAAATA-GATA
* *
78526309 TGGGCCTAATGGCCCATATGAAAGAGAT-
1 TGGGCCTAATGGGCCATATGAAATAGATA
* * *
78526337 TGGGCCTAGTGGGCCATAT-ATATAGGTA
1 TGGGCCTAATGGGCCATATGAAATAGATA
78526365 TGGG
1 TGGG
78526369 GGTTTGTCTG
Statistics
Matches: 72, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
27 5 0.07
28 49 0.68
29 18 0.25
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATGAAATAGATA
Found at i:78526368 original size:56 final size:56
Alignment explanation
Indices: 78526253--78526368 Score: 137
Period size: 56 Copynumber: 2.1 Consensus size: 56
78526243 AAATGTAATT
* * *
78526253 TGGGCCTAGTGGCCATATGAATATGATTTGGGCCTAATGGGCCACATAAATATGAA
1 TGGGCCTAATGGCCATATGAATATGAATTGGGCCTAATGGGCCACATAAATAGGAA
* * * *
78526309 TGGGCCTAATGGCCCATATGAA-A-GAGATTGGGCCTAGTGGGCCATATATATAGGTA
1 TGGGCCTAATGG-CCATATGAATATGA-ATTGGGCCTAATGGGCCACATAAATAGGAA
78526365 TGGG
1 TGGG
78526369 GGTTTGTCTG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
55 2 0.04
56 40 0.78
57 9 0.18
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (56 bp):
TGGGCCTAATGGCCATATGAATATGAATTGGGCCTAATGGGCCACATAAATAGGAA
Found at i:78538154 original size:29 final size:29
Alignment explanation
Indices: 78538137--78538192 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
78538127 AGTTGGTTTG
78538137 ATTCTCCCATGAGTTCTTGAGCTAGAATT
1 ATTCTCCCATGAGTTCTTGAGCTAGAATT
*
78538166 ATTCTCCCATGAGTTCTTGAGCCAGAA
1 ATTCTCCCATGAGTTCTTGAGCTAGAA
78538193 CCATTCATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (29 bp):
ATTCTCCCATGAGTTCTTGAGCTAGAATT
Found at i:78539670 original size:16 final size:17
Alignment explanation
Indices: 78539639--78539671 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
78539629 TTCATAAGTA
78539639 TATACCAATCATTTCAT
1 TATACCAATCATTTCAT
*
78539656 TATATCAAT-ATTTCAT
1 TATACCAATCATTTCAT
78539672 GCACCATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45
Consensus pattern (17 bp):
TATACCAATCATTTCAT
Found at i:78540017 original size:46 final size:46
Alignment explanation
Indices: 78539957--78540230 Score: 377
Period size: 46 Copynumber: 6.0 Consensus size: 46
78539947 TTTGACATGA
* * *
78539957 TGCCATAGTGTCTTTCAACCATGGTCTTACACATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* ** *** *
78540003 TGCCATGATATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
** *** *
78540049 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
**
78540095 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
78540141 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
78540187 AGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
78540231 AGAGCACACT
Statistics
Matches: 211, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 211 1.00
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:78544254 original size:17 final size:18
Alignment explanation
Indices: 78544232--78544265 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78544222 GTAAGTTTTG
78544232 TGTTT-AGATTAATTATT
1 TGTTTAAGATTAATTATT
*
78544249 TGTTTAAGGTTAATTAT
1 TGTTTAAGATTAATTAT
78544266 GATTTGTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.15, T:0.56
Consensus pattern (18 bp):
TGTTTAAGATTAATTATT
Found at i:78547965 original size:22 final size:22
Alignment explanation
Indices: 78547947--78547988 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
78547937 TATAATAATA
78547947 AAGTAAAT-ATAATAAAATAAAT
1 AAGTAAATGA-AATAAAATAAAT
78547969 AAGTAAATGAAAT-AAATAAA
1 AAGTAAATGAAATAAAATAAA
78547989 GAAAGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 11 0.58
23 1 0.05
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (22 bp):
AAGTAAATGAAATAAAATAAAT
Found at i:78547969 original size:26 final size:28
Alignment explanation
Indices: 78547921--78547988 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 28
78547911 CTTAATATTT
*
78547921 AAGTAAATAT-ATAGAATATAATAA-TA
1 AAGTAAATATAATAAAATATAATAAGTA
78547947 AAGTAAATATAATAAAATA-AATAAGTA
1 AAGTAAATATAATAAAATATAATAAGTA
78547974 AA-TGAAATA-AATAAA
1 AAGT-AAATATAATAAA
78547989 GAAAGAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
26 22 0.58
27 16 0.42
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.26
Consensus pattern (28 bp):
AAGTAAATATAATAAAATATAATAAGTA
Found at i:78548987 original size:41 final size:39
Alignment explanation
Indices: 78548943--78549067 Score: 128
Period size: 40 Copynumber: 3.2 Consensus size: 39
78548933 GACTTCAAGT
* *
78548943 CGATGAGACATTGGGTGTCAAATTATCACTTCGAATATATT
1 CGATGAGACACTGGGTGTCAAATTAT-ACTTCGAAT-TATC
* * * * ** *
78548984 CGATGAGGCAGTGGGTG-CCAATT-TACTTTGGTTTAGC
1 CGATGAGACACTGGGTGTCAAATTATACTTCGAATTATC
78549021 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAAATTA-TACTTCGAATTATC
78549061 CGATGAG
1 CGATGAG
78549068 GTACTGGTTG
Statistics
Matches: 66, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
37 17 0.26
38 11 0.17
39 1 0.02
40 22 0.33
41 15 0.23
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATTATACTTCGAATTATC
Found at i:78551149 original size:46 final size:45
Alignment explanation
Indices: 78551090--78551263 Score: 152
Period size: 46 Copynumber: 3.8 Consensus size: 45
78551080 TCACTTGTGT
*
78551090 GAGCTAGTGTAAAACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCACA-TATGA
* * * * * *
78551136 GAGCCAATGTAAAACCATGTCTGTGACATGGCATCGACATAGATACGA
1 GAGCCAGTGTAAAA-CATGTCTGGGACAT-GCATCGGC-CACATATGA
* * * * ** *
78551184 GTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTTGAAATGTA
1 GAGCCAGTGTAAAACATGTCTGGGACATGCATCGGCC-ACATATG-A
*
78551231 -AGCCAGTGTAAGACATGTCTGGGACATGCATCG
1 GAGCCAGTGTAAAACATGTCTGGGACATGCATCG
78551264 ACTAAGCGAT
Statistics
Matches: 102, Mismatches: 21, Indels: 10
0.77 0.16 0.08
Matches are distributed among these distances:
46 53 0.52
47 26 0.25
48 21 0.21
49 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (45 bp):
GAGCCAGTGTAAAACATGTCTGGGACATGCATCGGCCACATATGA
Found at i:78558834 original size:46 final size:46
Alignment explanation
Indices: 78558688--78558991 Score: 197
Period size: 46 Copynumber: 6.4 Consensus size: 46
78558678 TCACTTGTGT
* * * * * *
78558688 GAGCTACTGTAAGAAACGTCTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* * *
78558734 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGACGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA
*
78558782 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
* * *
78558829 -AGCTAGTGTAAGACATGTCTGGGATATGTATCGG-CT-AAG-CGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
* * * ** * *
78558871 TGTGTTAGTGTAAGACCACGTCTGGGACATGGCATCAACAC-GGATATGCGA
1 -GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGA--CGA
* * * *
78558922 GAGCTAGTATAAGACCATGCCTGGGACATGGCATCCGCCTCGATGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GACGA
* * *
78558971 TAGCCAGTGTAATACCATGTC
1 GAGCTAGTGTAAGA-CATGTC
78558992 GGGCGGCAGT
Statistics
Matches: 201, Mismatches: 41, Indels: 29
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 13 0.06
45 14 0.07
46 62 0.31
47 27 0.13
48 25 0.12
49 20 0.10
50 33 0.16
51 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:78561333 original size:6 final size:6
Alignment explanation
Indices: 78561324--78561538 Score: 349
Period size: 6 Copynumber: 35.8 Consensus size: 6
78561314 CTTAGGCTTG
* * *
78561324 GGCTCA GGCTCG GGCTCA GGCTCG GGCTCA GGCTCA GGCTCG GGCTCA
1 GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA
78561372 GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA
1 GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA
78561420 GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA
1 GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA
* * *
78561468 GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCG GGCTCG GGCTTA
1 GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA GGCTCA
* * *
78561516 GGCTCA AGCTGA GGCTCT GGCTC
1 GGCTCA GGCTCA GGCTCA GGCTC
78561539 TAGCTCTAGC
Statistics
Matches: 194, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 194 1.00
ACGTcount: A:0.14, C:0.33, G:0.36, T:0.18
Consensus pattern (6 bp):
GGCTCA
Found at i:78561544 original size:12 final size:12
Alignment explanation
Indices: 78561528--78561593 Score: 55
Period size: 12 Copynumber: 5.5 Consensus size: 12
78561518 CTCAAGCTGA
*
78561528 GGCTCTGGCTCT
1 GGCTCTAGCTCT
*
78561540 AGCTCTAGCTCT
1 GGCTCTAGCTCT
*
78561552 GGCTCTAGAT-T
1 GGCTCTAGCTCT
* *
78561563 AGGCTCGAGCTCG
1 -GGCTCTAGCTCT
78561576 GGCT-TGAGCTCT
1 GGCTCT-AGCTCT
78561588 GGCTCT
1 GGCTCT
78561594 GGCTAGGCCT
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
11 1 0.02
12 39 0.95
13 1 0.02
ACGTcount: A:0.11, C:0.29, G:0.30, T:0.30
Consensus pattern (12 bp):
GGCTCTAGCTCT
Found at i:78561568 original size:18 final size:19
Alignment explanation
Indices: 78561527--78561568 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
78561517 GCTCAAGCTG
*
78561527 AGGCTCTGGCTCTAGCTCT
1 AGGCTCTGGCTCTAGATCT
78561546 A-GCTCTGGCTCTAGAT-T
1 AGGCTCTGGCTCTAGATCT
78561563 AGGCTC
1 AGGCTC
78561569 GAGCTCGGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 2 0.10
18 18 0.86
19 1 0.05
ACGTcount: A:0.14, C:0.29, G:0.26, T:0.31
Consensus pattern (19 bp):
AGGCTCTGGCTCTAGATCT
Found at i:78562254 original size:14 final size:14
Alignment explanation
Indices: 78562235--78562262 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
78562225 ATAAATTACA
78562235 TGTTAGAATAGTAT
1 TGTTAGAATAGTAT
78562249 TGTTAGAATAGTAT
1 TGTTAGAATAGTAT
78562263 CATTAGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.43
Consensus pattern (14 bp):
TGTTAGAATAGTAT
Found at i:78562268 original size:14 final size:14
Alignment explanation
Indices: 78562237--78562270 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
78562227 AAATTACATG
**
78562237 TTAGAATAGTATTG
1 TTAGAATAGTATCA
78562251 TTAGAATAGTATCA
1 TTAGAATAGTATCA
78562265 TTAGAA
1 TTAGAA
78562271 AAAAAATGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (14 bp):
TTAGAATAGTATCA
Found at i:78564518 original size:32 final size:32
Alignment explanation
Indices: 78564482--78564579 Score: 119
Period size: 32 Copynumber: 3.1 Consensus size: 32
78564472 AGGTGTGCCA
*
78564482 CCTGTGGAATGGGCTTGACCAACAGTGTGCTG
1 CCTGTGGAATGGGCATGACCAACAGTGTGCTG
*
78564514 CCTGTGGAATGGGCATGACCAACCA--GTGCCG
1 CCTGTGGAATGGGCATGACCAA-CAGTGTGCTG
* ***
78564545 CCTGTGAAATGGGCATGACCAGTGGTGTGCTG
1 CCTGTGGAATGGGCATGACCAACAGTGTGCTG
78564577 CCT
1 CCT
78564580 TTCTTTGTGG
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
31 25 0.45
32 29 0.52
33 2 0.04
ACGTcount: A:0.19, C:0.24, G:0.34, T:0.22
Consensus pattern (32 bp):
CCTGTGGAATGGGCATGACCAACAGTGTGCTG
Found at i:78564556 original size:31 final size:31
Alignment explanation
Indices: 78564476--78564565 Score: 119
Period size: 31 Copynumber: 2.9 Consensus size: 31
78564466 AGTCAGAGGT
* *
78564476 GTGCCACCTGTGGAATGGGCTTGACCAACAG
1 GTGCCGCCTGTGGAATGGGCATGACCAACAG
*
78564507 TGTGCTGCCTGTGGAATGGGCATGACCAACCA-
1 -GTGCCGCCTGTGGAATGGGCATGACCAA-CAG
*
78564539 GTGCCGCCTGTGAAATGGGCATGACCA
1 GTGCCGCCTGTGGAATGGGCATGACCA
78564566 GTGGTGTGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
31 25 0.48
32 25 0.48
33 2 0.04
ACGTcount: A:0.22, C:0.26, G:0.32, T:0.20
Consensus pattern (31 bp):
GTGCCGCCTGTGGAATGGGCATGACCAACAG
Found at i:78570724 original size:27 final size:27
Alignment explanation
Indices: 78570692--78570869 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
78570682 TAAATTGTAC
* *
78570692 AGCACTAAGTGTGCGATTTGACTATGC
1 AGCACTAAGTGTGCGAATTGACTATGT
*
78570719 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * **
78570746 TGCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
*
78570772 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
78570800 GGCACTAAGTGTGCGAGATTGATTACGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
78570828 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
78570855 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78570870 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:78577093 original size:27 final size:27
Alignment explanation
Indices: 78577055--78577230 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
78577045 TAAATTGTAC
*
78577055 AGCACCTAAGTGTGCGAATTGACTATGC
1 AGCA-CTAAGTGTGCGAATTGACTATGT
*
78577083 AGCACTAAGTGTGCGACTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* **
78577110 -GCACTAAGTGTGCGAAATGAAAATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
*
78577135 ATGCACTAAGTGT-CGAATTGACCATGT
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
78577162 GGCACTAAGTGTGCGAGA-TGAATACGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
78577189 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
78577216 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78577231 GACTCAATAT
Statistics
Matches: 123, Mismatches: 19, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
26 42 0.34
27 76 0.62
28 5 0.04
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:78577119 original size:53 final size:52
Alignment explanation
Indices: 78577055--78577230 Score: 185
Period size: 53 Copynumber: 3.3 Consensus size: 52
78577045 TAAATTGTAC
* *
78577055 AGCACCTAAGTGTGCGAATTGACTATGCAGCACTAAGTGTGCGACTTGACTATGT
1 AGCA-CTAAGTGTGCGAA-TGAATATG-AGCACTAAGTGTGCGAATTGACTATGT
* *
78577110 -GCACTAAGTGTGCGAAATGAAAATGATGCACTAAGTGT-CGAATTGACCATGT
1 AGCACTAAGTGTGCG-AATGAATATGA-GCACTAAGTGTGCGAATTGACTATGT
* * * * *
78577162 GGCACTAAGTGTGCGAGATGAATACGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-ATGAATATG-AGCACTAAGTGTGCGAATTGACTATGT
*
78577216 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
78577231 GACTCAATAT
Statistics
Matches: 103, Mismatches: 12, Indels: 13
0.80 0.09 0.10
Matches are distributed among these distances:
52 14 0.14
53 60 0.58
54 29 0.28
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATGAATATGAGCACTAAGTGTGCGAATTGACTATGT
Found at i:78580586 original size:40 final size:39
Alignment explanation
Indices: 78580528--78580738 Score: 228
Period size: 40 Copynumber: 5.3 Consensus size: 39
78580518 ATTTGAATGA
* *
78580528 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTT
* * *
78580568 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGTTT
* * *
78580608 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTG-TTT
* * *
78580648 TATCCGGACTAAGATCCGAAGGCATTTGTGCGAGT-TTAT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTT-T
* * *
78580687 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTA
1 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GTTT
78580728 TATCC-GGCTAA
1 TATCCGGGCTAA
78580739 ATTCCGAAGA
Statistics
Matches: 141, Mismatches: 24, Indels: 13
0.79 0.13 0.07
Matches are distributed among these distances:
38 2 0.01
39 9 0.06
40 126 0.89
41 2 0.01
42 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGTTT
Found at i:78580667 original size:80 final size:79
Alignment explanation
Indices: 78580531--78580747 Score: 301
Period size: 80 Copynumber: 2.7 Consensus size: 79
78580521 TGAATGATAT
* *
78580531 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGATCCGAAGGCATTTG
* *
78580596 TGCGAGTTGCTATAC
65 TGCGAGTTGATAAAC
*
78580611 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGG-CTAAGATCCGAAGGCATTTG
* *
78580676 TGCGAGTTTATAAAT
65 TGCGAGTTGATAAAC
* * * *
78580691 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAA-ATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGA-TCCGAAG
78580748 AAACTTGGGT
Statistics
Matches: 123, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
78 1 0.01
79 13 0.11
80 109 0.89
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGATCCGAAGGCATTTGT
GCGAGTTGATAAAC
Found at i:78588624 original size:40 final size:40
Alignment explanation
Indices: 78588555--78588765 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
78588545 CATTTGAATG
* *
78588555 ATATCCGGGCTAAG-TCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
78588594 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
78588634 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * * * * *
78588674 TTATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
78588714 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
78588754 ATATCC-GGCTAA
1 ATATCCGGGCTAA
78588766 ATTCCGAAGA
Statistics
Matches: 139, Mismatches: 30, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
39 21 0.15
40 116 0.83
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:78588703 original size:80 final size:79
Alignment explanation
Indices: 78588559--78588774 Score: 301
Period size: 80 Copynumber: 2.7 Consensus size: 79
78588549 TGAATGATAT
* *
78588559 CCGGGCTAAG-TCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCC-GGCTAAGATCCGAAGGCATTTG
* *
78588623 TGCGAGTTGCTATAC
65 TGCGAGTTACTAAAC
*
78588638 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGG-CTAAGATCCGAAGGCATTTG
*
78588703 TGCGAGTTACTAAAT
65 TGCGAGTTACTAAAC
* * * *
78588718 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCCGGCTAA-ATTCCGAAG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGA-TCCGAAG
78588775 AAACTTGGGT
Statistics
Matches: 123, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 22 0.18
80 100 0.81
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGCTAAGATCCGAAGGCATTTGT
GCGAGTTACTAAAC
Found at i:78591262 original size:50 final size:50
Alignment explanation
Indices: 78591187--78591430 Score: 346
Period size: 50 Copynumber: 4.9 Consensus size: 50
78591177 GATGCTAGGA
* *
78591187 AGATATGAGAGCTAGTGTAAGACCATGTCTCGGACATGGCATCAGCCTCG
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
*
78591237 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCG
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
* *
78591287 AGATATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCATCG
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
* * * * *
78591337 ATAGATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATTGGCCTTG
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
* * * *
78591387 ATATACGAGAG-TCAATGTAAGACCATGTCTGGAACATGGCATCG
1 AGATATGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
78591431 ACTTTGATGT
Statistics
Matches: 176, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
49 1 0.01
50 175 0.99
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (50 bp):
AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
Found at i:78595371 original size:26 final size:26
Alignment explanation
Indices: 78595340--78595447 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
78595330 TGAAATGCCC
*
78595340 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
78595366 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
78595392 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
78595418 ATCATGGAACATTTACCTAACCCACT
1 ATCATGGAACATTTACCTAACCCATT
78595444 ATCA
1 ATCA
78595448 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:78621751 original size:23 final size:23
Alignment explanation
Indices: 78621709--78621861 Score: 245
Period size: 23 Copynumber: 6.7 Consensus size: 23
78621699 GCAAGTTCCT
78621709 TCGAGCTG-AACAGTAAGCTCTA
1 TCGAGCTGAAACAGTAAGCTCTA
* *
78621731 TCGAACTGAAACGGTAAGCTCTA
1 TCGAGCTGAAACAGTAAGCTCTA
78621754 TCGAGCTGAAACAGTAAGCTCTA
1 TCGAGCTGAAACAGTAAGCTCTA
*
78621777 TCGAGCTGAAACGGTAAGCTCTA
1 TCGAGCTGAAACAGTAAGCTCTA
78621800 TCGAGCTGAAACAGTAAGCTCTA
1 TCGAGCTGAAACAGTAAGCTCTA
78621823 TCGAGCTGAAACAGTAAGCTCTA
1 TCGAGCTGAAACAGTAAGCTCTA
* * *
78621846 TTGAGCTAAAATAGTA
1 TCGAGCTGAAACAGTA
78621862 CACTTTTACG
Statistics
Matches: 121, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
22 7 0.06
23 114 0.94
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (23 bp):
TCGAGCTGAAACAGTAAGCTCTA
Found at i:78624475 original size:26 final size:26
Alignment explanation
Indices: 78624444--78624495 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
78624434 TCGATACACA
*
78624444 AATCCTATTTCGGAGCATTAAACAAT
1 AATCCTATTTCAGAGCATTAAACAAT
78624470 AATCCTATTTCAGAGCATTAAACAAT
1 AATCCTATTTCAGAGCATTAAACAAT
78624496 CATCAATTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (26 bp):
AATCCTATTTCAGAGCATTAAACAAT
Found at i:78631858 original size:13 final size:13
Alignment explanation
Indices: 78631840--78631864 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78631830 TAAATTATAT
78631840 GTGTGAAAATTTC
1 GTGTGAAAATTTC
78631853 GTGTGAAAATTT
1 GTGTGAAAATTT
78631865 TAGCGTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:78637880 original size:35 final size:35
Alignment explanation
Indices: 78637825--78637928 Score: 118
Period size: 35 Copynumber: 3.0 Consensus size: 35
78637815 CATAGGTAAT
* *
78637825 TACATGTAAGCTTATATTGAACTTGTATATTCGGC
1 TACATGTGAGCTTATATTGAATTTGTATATTCGGC
* * * * **
78637860 TGCATGTGAGGTTATGTTGAATTTGAATATTCGAT
1 TACATGTGAGCTTATATTGAATTTGTATATTCGGC
* *
78637895 TACATGTGAGTTTATATTGAATTTGTGTATTCGG
1 TACATGTGAGCTTATATTGAATTTGTATATTCGG
78637929 TCATATGTAA
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
35 55 1.00
ACGTcount: A:0.26, C:0.09, G:0.22, T:0.43
Consensus pattern (35 bp):
TACATGTGAGCTTATATTGAATTTGTATATTCGGC
Found at i:78641369 original size:46 final size:46
Alignment explanation
Indices: 78641316--78641406 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
78641306 TATATATACA
* * *
78641316 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
78641362 CATCTCATACACGTTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATAT
78641407 ATACATGTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.26, C:0.32, G:0.09, T:0.33
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:78641442 original size:47 final size:46
Alignment explanation
Indices: 78641380--78641523 Score: 225
Period size: 47 Copynumber: 3.1 Consensus size: 46
78641370 ACACGTTTCG
* * *
78641380 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATAT-CATGTTCACATTCATCA
*
78641427 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATA-TCATGTTCACATTCATCA
78641474 CATTGGCCATTCGGCCTTATCACACATACTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATA-TCATGTTCACATTCATCA
78641521 CAT
1 CAT
78641524 AAAATCCTAA
Statistics
Matches: 91, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.31
Consensus pattern (46 bp):
CATTGGCCATTCGGCCTTATCACACATATCATGTTCACATTCATCA
Found at i:78652642 original size:22 final size:22
Alignment explanation
Indices: 78652617--78652660 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
78652607 CTATATGTGA
78652617 TGTTCTATTGAATTTGAACTAT
1 TGTTCTATTGAATTTGAACTAT
*
78652639 TGTTCTGTTGAATTTGAACTAT
1 TGTTCTATTGAATTTGAACTAT
78652661 AGGTTACATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.09, G:0.16, T:0.50
Consensus pattern (22 bp):
TGTTCTATTGAATTTGAACTAT
Found at i:78656385 original size:46 final size:44
Alignment explanation
Indices: 78656203--78656421 Score: 145
Period size: 46 Copynumber: 4.8 Consensus size: 44
78656193 GTTATTTCTA
* * *
78656203 TGCCAATGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATG
* ** * * * * *
78656247 AGAACCAGTGTAAGACCATACCTGAGACATGGCATTGGCATTGAGACGAG
1 TG--CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA--TG
* * * *
78656297 AGCTAGTGTAAGACATGTCTAGGACACGCATCGGCCTCGAGATG
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG
* *
78656341 TAAGCCAGTGTAAGACATGTCTGGGACGTGCATCGG-CTATGAGATG
1 T--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATG
* *
78656387 TGTCAGTGTAAGATGATGTCTGGGACATGGCATCG
1 TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
78656422 ACACGGATAT
Statistics
Matches: 133, Mismatches: 30, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
44 13 0.10
45 14 0.11
46 64 0.48
47 20 0.15
48 18 0.14
49 1 0.01
50 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (44 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG
Found at i:78659766 original size:38 final size:39
Alignment explanation
Indices: 78659714--78659865 Score: 150
Period size: 38 Copynumber: 4.0 Consensus size: 39
78659704 GATACAATTA
* * *
78659714 CACCAGCACGAAGCCTGGTAGGCACAGAGCTCGAATAAT
1 CACCGGCACAAAGCCTGCTAGGCACAGAGCTCGAATAAT
*
78659753 -ACCGGCACAAAGCCTGCTAGGCACAGAGCCCGAAT-AT
1 CACCGGCACAAAGCCTGCTAGGCACAGAGCTCGAATAAT
* ** *
78659790 CACTGGCACTCAGCCTGTTAGGCACAGAGCTCGAAT-AT
1 CACCGGCACAAAGCCTGCTAGGCACAGAGCTCGAATAAT
* *** *
78659828 CACCAGTGTAAAGCCTGCTAGGCAC-GTAGCCCGAATAA
1 CACCGGCACAAAGCCTGCTAGGCACAG-AGCTCGAATAA
78659866 CATTACAATT
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
37 3 0.03
38 88 0.96
39 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.24, T:0.15
Consensus pattern (39 bp):
CACCGGCACAAAGCCTGCTAGGCACAGAGCTCGAATAAT
Found at i:78661030 original size:18 final size:17
Alignment explanation
Indices: 78661009--78661042 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
78660999 CTTGAACTTA
78661009 ATAAATCACTTAAATAAC
1 ATAAATCA-TTAAATAAC
*
78661027 ATAAATTATTAAATAA
1 ATAAATCATTAAATAA
78661043 AACCCTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAAATCATTAAATAAC
Found at i:78677397 original size:14 final size:14
Alignment explanation
Indices: 78677387--78677414 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
78677377 AGAAATTTTG
78677387 TCCTCGAAATTTCA
1 TCCTCGAAATTTCA
78677401 TCCTCGAAATTTCA
1 TCCTCGAAATTTCA
78677415 AAATATCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.36
Consensus pattern (14 bp):
TCCTCGAAATTTCA
Found at i:78686440 original size:59 final size:59
Alignment explanation
Indices: 78686348--78686521 Score: 258
Period size: 59 Copynumber: 2.9 Consensus size: 59
78686338 AATTGATACC
* *
78686348 TAATACATGCTAGGGTTTGGGTGCTTTTGAGTAGCACCGTTGAGAGGCATGTGATTAAG
1 TAATACATGCTAGGGTCTGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATTAAG
* * * * * *
78686407 TAATACATGCTAGGGTCTAGATGCTTTTGAGTAGCCCCATTGAGAGGGATGTGAATATG
1 TAATACATGCTAGGGTCTGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATTAAG
* *
78686466 TGATACATGCTAGGGTCTGGGTGCTTTTGAGTAGCCCCGTTGAAAGGCATGTGATT
1 TAATACATGCTAGGGTCTGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATT
78686522 CTATGATCTG
Statistics
Matches: 100, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
59 100 1.00
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.32
Consensus pattern (59 bp):
TAATACATGCTAGGGTCTGGGTGCTTTTGAGTAGCCCCGTTGAGAGGCATGTGATTAAG
Found at i:78691665 original size:29 final size:27
Alignment explanation
Indices: 78691628--78691704 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 27
78691618 ATAACTTATA
78691628 TTCAACACTTAATTTTTTAATATTTATTT
1 TTCAACACTTAATTTTTTAATA-TT-TTT
*
78691657 TTCAACACTT-ATTTATCTT-TTATTTTT
1 TTCAACACTTAATTT-T-TTAATATTTTT
*
78691684 TTCAACTCTTAATTTTTTAAT
1 TTCAACACTTAATTTTTTAAT
78691705 CTGTCAAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
26 2 0.05
27 14 0.34
28 10 0.24
29 13 0.32
30 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60
Consensus pattern (27 bp):
TTCAACACTTAATTTTTTAATATTTTT
Found at i:78691668 original size:14 final size:14
Alignment explanation
Indices: 78691628--78691670 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
78691618 ATAACTTATA
78691628 TTCAACACTTAATTT
1 TTCAACACTT-ATTT
* * *
78691643 TTTAATATTTATTT
1 TTCAACACTTATTT
78691657 TTCAACACTTATTT
1 TTCAACACTTATTT
78691671 ATCTTTTATT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 15 0.68
15 7 0.32
ACGTcount: A:0.30, C:0.14, G:0.00, T:0.56
Consensus pattern (14 bp):
TTCAACACTTATTT
Found at i:78695006 original size:29 final size:29
Alignment explanation
Indices: 78694935--78695006 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
78694925 ATTCATATGA
* *
78694935 AATATAATATTTTCCTCATTCACAAACTC
1 AATAGAATATTTTTCTCATTCACAAACTC
* *
78694964 AATAGAATATTTTTCTCATTCATAATCTC
1 AATAGAATATTTTTCTCATTCACAAACTC
78694993 AATA-AATATCTTTT
1 AATAGAATAT-TTTT
78695007 AAAACCAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 5 0.13
29 33 0.87
ACGTcount: A:0.38, C:0.18, G:0.01, T:0.43
Consensus pattern (29 bp):
AATAGAATATTTTTCTCATTCACAAACTC
Found at i:78702363 original size:20 final size:20
Alignment explanation
Indices: 78702340--78702378 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
78702330 TATCGATACT
* *
78702340 TTTCTTAAGTTATCAATATA
1 TTTCCTAAGGTATCAATATA
*
78702360 TTTCCTAAGGTATTAATAT
1 TTTCCTAAGGTATCAATAT
78702379 TCCTGCTCCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.10, G:0.08, T:0.49
Consensus pattern (20 bp):
TTTCCTAAGGTATCAATATA
Found at i:78713500 original size:7 final size:7
Alignment explanation
Indices: 78713490--78713521 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
78713480 CTTATTTTAT
78713490 TTTATTA
1 TTTATTA
78713497 TTTATTA
1 TTTATTA
78713504 TTTA-T-
1 TTTATTA
78713509 TTTATTA
1 TTTATTA
78713516 TTTATT
1 TTTATT
78713522 TTATATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.17
6 2 0.09
7 17 0.74
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTATTA
Found at i:78713500 original size:12 final size:12
Alignment explanation
Indices: 78713475--78713525 Score: 68
Period size: 12 Copynumber: 4.2 Consensus size: 12
78713465 AATAGGAAGA
*
78713475 TATTACTTATTT
1 TATTATTTATTT
*
78713487 TATTTTATTA-TT
1 TATTAT-TTATTT
78713499 TATTATTTATTT
1 TATTATTTATTT
78713511 TATTATTTATTT
1 TATTATTTATTT
78713523 TAT
1 TAT
78713526 ATTAAATTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 3 0.09
12 28 0.82
13 3 0.09
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (12 bp):
TATTATTTATTT
Found at i:78713528 original size:19 final size:18
Alignment explanation
Indices: 78713475--78713528 Score: 74
Period size: 19 Copynumber: 2.9 Consensus size: 18
78713465 AATAGGAAGA
*
78713475 TATTACTTA-TTTTATTT
1 TATTATTTATTTTTATTT
78713492 TATTATTTATTATTTATTT
1 TATTATTTATT-TTTATTT
78713511 TATTATTTATTTTATATT
1 TATTATTTATTTT-TATT
78713529 AAATTAGTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
17 8 0.24
18 3 0.09
19 22 0.67
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (18 bp):
TATTATTTATTTTTATTT
Found at i:78717213 original size:23 final size:23
Alignment explanation
Indices: 78717187--78717240 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
78717177 ATCCTTTTTC
*
78717187 ATTTCTAACTTAAAAA-TCTATCA
1 ATTTCTAACTTAAAAACTCAAT-A
*
78717210 ATTT-AACACTTAAAAACTCAATA
1 ATTTCTA-ACTTAAAAACTCAATA
78717233 ATTTCTAA
1 ATTTCTAA
78717241 AATTTTGACA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
22 1 0.04
23 19 0.76
24 5 0.20
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.37
Consensus pattern (23 bp):
ATTTCTAACTTAAAAACTCAATA
Found at i:78720674 original size:29 final size:30
Alignment explanation
Indices: 78720617--78720699 Score: 132
Period size: 29 Copynumber: 2.8 Consensus size: 30
78720607 GTGTGCTAAA
* *
78720617 CAATGGTCGAAACTATCTCTTTTCTTTAAT
1 CAATGGTCGAAACCATCCCTTTTCTTTAAT
78720647 CAATGGTCG-AACCATCCCTTTTCTTTAAT
1 CAATGGTCGAAACCATCCCTTTTCTTTAAT
*
78720676 CAATGGTCGAAACCACCCCTTTTC
1 CAATGGTCGAAACCATCCCTTTTC
78720700 ATATTTGATG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
29 27 0.55
30 22 0.45
ACGTcount: A:0.25, C:0.28, G:0.11, T:0.36
Consensus pattern (30 bp):
CAATGGTCGAAACCATCCCTTTTCTTTAAT
Found at i:78720710 original size:29 final size:29
Alignment explanation
Indices: 78720678--78720768 Score: 105
Period size: 29 Copynumber: 3.1 Consensus size: 29
78720668 TCTTTAATCA
78720678 ATGGTCGAAACCACCCCTTTTCATATTTG
1 ATGGTCGAAACCACCCCTTTTCATATTTG
* *
78720707 ATGGTTGAAGCCATCCCC-TTTCATATTTG
1 ATGGTCGAAACCA-CCCCTTTTCATATTTG
* * *
78720736 ATGGTC-ACCACCATCCCTTTTCATATTCG
1 ATGGTCGA-AACCACCCCTTTTCATATTTG
78720765 ATGG
1 ATGG
78720769 GCATTGATAC
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
28 4 0.08
29 44 0.85
30 4 0.08
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.35
Consensus pattern (29 bp):
ATGGTCGAAACCACCCCTTTTCATATTTG
Found at i:78722970 original size:21 final size:21
Alignment explanation
Indices: 78722946--78722990 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
78722936 TTCTTCTTGG
*
78722946 GTCTAGTTTAATGTCCAGTTA
1 GTCTAGTCTAATGTCCAGTTA
* *
78722967 GTCTAGTCTGATGTCCATTTA
1 GTCTAGTCTAATGTCCAGTTA
78722988 GTC
1 GTC
78722991 CAGTAATCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (21 bp):
GTCTAGTCTAATGTCCAGTTA
Found at i:78733587 original size:8 final size:8
Alignment explanation
Indices: 78733576--78733606 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
78733566 TTTTAAAGGT
78733576 TAATTAAG
1 TAATTAAG
*
78733584 TAATTAAA
1 TAATTAAG
78733592 TAATTAAG
1 TAATTAAG
78733600 TAATTAA
1 TAATTAA
78733607 TGATAAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (8 bp):
TAATTAAG
Found at i:78733595 original size:16 final size:16
Alignment explanation
Indices: 78733576--78733606 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
78733566 TTTTAAAGGT
78733576 TAATTAAGTAATTAAA
1 TAATTAAGTAATTAAA
78733592 TAATTAAGTAATTAA
1 TAATTAAGTAATTAA
78733607 TGATAAAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
TAATTAAGTAATTAAA
Found at i:78741125 original size:25 final size:25
Alignment explanation
Indices: 78741095--78741157 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
78741085 CAACTCATGT
*
78741095 GAGCATACCGATTTACAGCTTGTGA
1 GAGCATACCGATTTACAGCTTGAGA
* * *
78741120 GAGCATACCAATCTACAGCTTGAGT
1 GAGCATACCGATTTACAGCTTGAGA
*
78741145 GAGCATACTGATT
1 GAGCATACCGATT
78741158 CACAACTCGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (25 bp):
GAGCATACCGATTTACAGCTTGAGA
Found at i:78770168 original size:18 final size:18
Alignment explanation
Indices: 78770145--78770188 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
78770135 AAAGGGGAAG
*
78770145 ACGAAGGCGAACACTATA
1 ACGAAGACGAACACTATA
*
78770163 ACGAAGACGAACACTATG
1 ACGAAGACGAACACTATA
78770181 ACGAAGAC
1 ACGAAGAC
78770189 AAAACTAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.45, C:0.23, G:0.23, T:0.09
Consensus pattern (18 bp):
ACGAAGACGAACACTATA
Found at i:78777202 original size:12 final size:12
Alignment explanation
Indices: 78777170--78777203 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
78777160 ATCCTGGAAT
* *
78777170 ATTAAGAAAAGA
1 ATTAAGAACACA
78777182 ATTAAGAACACA
1 ATTAAGAACACA
78777194 ATTAAGAACA
1 ATTAAGAACA
78777204 AGTCAAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.62, C:0.09, G:0.12, T:0.18
Consensus pattern (12 bp):
ATTAAGAACACA
Found at i:78787532 original size:24 final size:24
Alignment explanation
Indices: 78787505--78787551 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
78787495 TAGGGGTAGG
*
78787505 ATCTAATTCTGTATTTGAAATTGC
1 ATCTAATTCTGTATATGAAATTGC
* *
78787529 ATCTAATTTTGTATATGAGATTG
1 ATCTAATTCTGTATATGAAATTG
78787552 ACATTTTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.47
Consensus pattern (24 bp):
ATCTAATTCTGTATATGAAATTGC
Found at i:78793732 original size:25 final size:25
Alignment explanation
Indices: 78793704--78793782 Score: 113
Period size: 25 Copynumber: 3.2 Consensus size: 25
78793694 TCTTCTAAGG
*
78793704 TGAATAATGAGAAGCTCATGCGAGC
1 TGAATAACGAGAAGCTCATGCGAGC
* *
78793729 TGAATAACGGGAAGCTCAAGCGAGC
1 TGAATAACGAGAAGCTCATGCGAGC
**
78793754 TGAATAACGAGAAGCTCATAAGAGC
1 TGAATAACGAGAAGCTCATGCGAGC
78793779 TGAA
1 TGAA
78793783 ATTGGTGACC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 47 1.00
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.16
Consensus pattern (25 bp):
TGAATAACGAGAAGCTCATGCGAGC
Found at i:78801277 original size:40 final size:38
Alignment explanation
Indices: 78801120--78801280 Score: 178
Period size: 38 Copynumber: 4.2 Consensus size: 38
78801110 GCAGGCTATA
* ** *
78801120 TGCTGGAATTATATCCAGGTTAAATCTCGCAGGCTTCG
1 TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCTTCG
* *
78801158 TGTTGGTAATATATCTGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCTTCG
* * * *
78801196 TGCCGGTATTATATCCGGGTTAAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCTTCG
* * * *
78801234 TGCTGGTATTATATCTGAGCTTCAAGTCCCGCAGGTTTTG
1 TGCTGGTATTATATCTG-GGTT-AAATCCCGCAGGCTTCG
78801274 TGCTGGT
1 TGCTGGT
78801281 GACTGGATTC
Statistics
Matches: 102, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 79 0.77
39 3 0.03
40 20 0.20
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCTGGGTTAAATCCCGCAGGCTTCG
Found at i:78809281 original size:38 final size:38
Alignment explanation
Indices: 78809239--78809382 Score: 184
Period size: 38 Copynumber: 3.8 Consensus size: 38
78809229 GGCTTAAAGA
* **
78809239 CTCGCAGGCTAT-ATGCTGGAATTATATCCAGGTTAAAT
1 CTCGCAGGCT-TCGTGCTGGAATTATATCTGGGTTAAAT
78809277 CTCGCAGGCTTCGTGCTGGTAA-TATATCTGGGTTAAAT
1 CTCGCAGGCTTCGTGCTGG-AATTATATCTGGGTTAAAT
* *
78809315 CCCGCAGGCTTCGTGCTGGTATTATATCTGGGTTAAAT
1 CTCGCAGGCTTCGTGCTGGAATTATATCTGGGTTAAAT
* * *
78809353 CTCGCAGGCCTAGTGCTGGTATTATATCTG
1 CTCGCAGGCTTCGTGCTGGAATTATATCTG
78809383 AGCTTAAAGT
Statistics
Matches: 95, Mismatches: 8, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
37 2 0.02
38 91 0.96
39 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (38 bp):
CTCGCAGGCTTCGTGCTGGAATTATATCTGGGTTAAAT
Found at i:78809339 original size:76 final size:78
Alignment explanation
Indices: 78809230--78809399 Score: 220
Period size: 76 Copynumber: 2.2 Consensus size: 78
78809220 GTGTATCCGG
* * * * *
78809230 GCTTAAAGACTCGCAGGCTAT-ATGCTGGAATTATATCCAGGTTAAATCTCGCAGGCTTCGTGCT
1 GCTTAAAGTCCCGCAGGCT-TCGTGCTGGAATTATATCCAGGTTAAATCTCGCAGGCCTAGTGCT
78809294 GGTAATATATCTG-
65 GGTAATATATCTGA
* * **
78809307 GGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATCTGGGTTAAATCTCGCAGGCCTAGTGCTG
1 GCTTAAAGTCCCGCAGGCTTCGTGCTGGAATTATATCCAGGTTAAATCTCGCAGGCCTAGTGCTG
*
78809371 GTATTATATCTGA
66 GTAATATATCTGA
78809384 GCTTAAAGTCCCGCAG
1 GCTTAAAGTCCCGCAG
78809400 TTTTTGTGTT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
75 1 0.01
76 58 0.73
77 12 0.15
78 8 0.10
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.31
Consensus pattern (78 bp):
GCTTAAAGTCCCGCAGGCTTCGTGCTGGAATTATATCCAGGTTAAATCTCGCAGGCCTAGTGCTG
GTAATATATCTGA
Found at i:78812507 original size:40 final size:40
Alignment explanation
Indices: 78812440--78812515 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
78812430 AGTATATTTG
* *
78812440 ACACTTAGTGTGCGCTTCAAAATAGCTTCAGCTATAAATA
1 ACACTTAGTGTGCGATTCAAAACAGCTTCAGCTATAAATA
* *
78812480 ACACTTAGTGTGCGAATT-AGAACAGCTTCGGCTATA
1 ACACTTAGTGTGCG-ATTCAAAACAGCTTCAGCTATA
78812516 TAAGGCACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 29 0.94
41 2 0.06
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (40 bp):
ACACTTAGTGTGCGATTCAAAACAGCTTCAGCTATAAATA
Found at i:78816510 original size:17 final size:17
Alignment explanation
Indices: 78816471--78816503 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
78816461 TAGCTCAAGT
78816471 GGCAACAACAATCTGTA
1 GGCAACAACAATCTGTA
78816488 GGCAACAACAATCTGT
1 GGCAACAACAATCTGT
78816504 GTGCAACCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.18
Consensus pattern (17 bp):
GGCAACAACAATCTGTA
Found at i:78822901 original size:79 final size:79
Alignment explanation
Indices: 78822770--78822930 Score: 295
Period size: 79 Copynumber: 2.0 Consensus size: 79
78822760 ACCTTGTACG
78822770 GAAAGCTGTCTTTGGAATGTCGCTTCCTTTTACTTTCAACTGGTAGTAGCCTGACCTTAAGTCAA
1 GAAAGCTGTCTTTGGAATGTCGCTTCCTTTTACTTTCAACTGGTAGTAGCCTGACCTTAAGTCAA
*
78822835 TCTTCGAAAATACA
66 TCTTCAAAAATACA
*
78822849 GAAAGCTGTCTTTGGAATGTCGCTTCCTTTTACTTTTAACTGGTAGTAGCCTGACCTTAAGTCAA
1 GAAAGCTGTCTTTGGAATGTCGCTTCCTTTTACTTTCAACTGGTAGTAGCCTGACCTTAAGTCAA
*
78822914 TCTTTAAAAATACA
66 TCTTCAAAAATACA
78822928 GAA
1 GAA
78822931 GCTCCTTTTA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 79 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (79 bp):
GAAAGCTGTCTTTGGAATGTCGCTTCCTTTTACTTTCAACTGGTAGTAGCCTGACCTTAAGTCAA
TCTTCAAAAATACA
Found at i:78825485 original size:42 final size:42
Alignment explanation
Indices: 78825425--78825512 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
78825415 GGGCTCCCAT
* * *
78825425 GGCCGTAGGGCCAGCCTGTAGGCATATCTGA-CTTACTCACAC
1 GGCCGTAGGACCAACCTGTAGGCAGATCTGACCTTAC-CACAC
* * * *
78825467 GGCCGTAGGACTAACCTGTGGGCAGGTCTGACCTTTCCACAC
1 GGCCGTAGGACCAACCTGTAGGCAGATCTGACCTTACCACAC
78825509 GGCC
1 GGCC
78825513 TGGGCACACG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
42 34 0.89
43 4 0.11
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.20
Consensus pattern (42 bp):
GGCCGTAGGACCAACCTGTAGGCAGATCTGACCTTACCACAC
Found at i:78827549 original size:3 final size:3
Alignment explanation
Indices: 78827528--78827576 Score: 75
Period size: 3 Copynumber: 16.7 Consensus size: 3
78827518 TTATCTCAAT
78827528 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
78827572 TAA TA
1 TAA TA
78827577 CGTAAATATC
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.09
3 36 0.84
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:78832842 original size:41 final size:40
Alignment explanation
Indices: 78832721--78832844 Score: 144
Period size: 41 Copynumber: 3.0 Consensus size: 40
78832711 ACCGGAGTGT
78832721 AAATAG-GGCCACGTATGTGCAATTCAAGGGTATTATAGTAC
1 AAATAGAGG-CACGTATGTGCAATTCAAGGGTATTA-AGTAC
* * *
78832762 AAACATAGGCACGTATGTGTAATT-AAGGGTTATTTAAGTAC
1 AAATAGAGGCACGTATGTGCAATTCAAGGG-TA-TTAAGTAC
* *
78832803 AAATAGAGGCACGTGTGTGCAATTCAAGGGTATCGAAGTAC
1 AAATAGAGGCACGTATGTGCAATTCAAGGGTAT-TAAGTAC
78832844 A
1 A
78832845 CTTACATTGA
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
40 6 0.09
41 54 0.77
42 10 0.14
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (40 bp):
AAATAGAGGCACGTATGTGCAATTCAAGGGTATTAAGTAC
Found at i:78834988 original size:21 final size:20
Alignment explanation
Indices: 78834966--78835005 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
78834956 TTTTACTTAA
78834966 TTAACTAACTAAATGTTAAAAT
1 TTAA-TAACTAAAT-TTAAAAT
*
78834988 TTTATAACTAAATTTAAA
1 TTAATAACTAAATTTAAA
78835006 TACCACACTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 9 0.53
22 3 0.18
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (20 bp):
TTAATAACTAAATTTAAAAT
Found at i:78836844 original size:25 final size:24
Alignment explanation
Indices: 78836811--78836860 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
78836801 GAAACTGAAC
78836811 TAAAACATAACGAAATGCTTGTAT
1 TAAAACATAACGAAATGCTTGTAT
*
78836835 TAAATACATAACGAAATGTTTGTAT
1 TAAA-ACATAACGAAATGCTTGTAT
78836860 T
1 T
78836861 CAATCTCCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 20 0.83
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (24 bp):
TAAAACATAACGAAATGCTTGTAT
Found at i:78848468 original size:47 final size:47
Alignment explanation
Indices: 78848409--78848755 Score: 570
Period size: 47 Copynumber: 7.4 Consensus size: 47
78848399 GATGTACAAG
* *
78848409 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
78848456 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
78848503 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* *
78848550 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
78848597 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
78848644 GTGTATATATGTGATAAGGCCGAGA-GGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTA-ATGGCCAATGTGATGAATGTGAAA
* * *
78848691 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGCTGGATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
78848738 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
78848756 TCCCGAAGGG
Statistics
Matches: 283, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 1 0.00
47 281 0.99
48 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:78850823 original size:29 final size:29
Alignment explanation
Indices: 78850791--78850906 Score: 121
Period size: 29 Copynumber: 4.0 Consensus size: 29
78850781 TACCTGTATT
*
78850791 TGGCCCATTAAAGCCC-AATCATATTCATA
1 TGGCCCATT-AAGCCCAAATCACATTCATA
* *
78850820 TGGCTCATTAAGCCCAAATCACCTAT-ATA
1 TGGCCCATTAAGCCCAAATCACAT-TCATA
* *
78850849 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
* * *
78850878 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAAGCCCAAATCACATTCATA
78850906 T
1 T
78850907 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
28 19 0.25
29 55 0.73
30 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAAGCCCAAATCACATTCATA
Found at i:78850893 original size:58 final size:58
Alignment explanation
Indices: 78850782--78850893 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
78850772 AAATTCACAT
* * * *
78850782 ACCTGTATTTGGCCCATTAAAGCCCAATCATATTCATATGGCTCATTAAGCCCAAATC
1 ACCTATATATGGCCCATTAAAGCCCAATCACATTCATATGGCCCATTAAGCCCAAATC
* * * *
78850840 ACCTATATATGGCCCATT-AGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAAGCCC-AATCACATTCATATGGCCCATTAAGCCCA
78850894 GTCACATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
57 5 0.11
58 40 0.89
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.28
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAAGCCCAATCACATTCATATGGCCCATTAAGCCCAAATC
Found at i:78856581 original size:64 final size:64
Alignment explanation
Indices: 78856495--78856730 Score: 280
Period size: 64 Copynumber: 3.7 Consensus size: 64
78856485 AGACATTATG
* *
78856495 ATGTTGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAA
1 ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAA
* *
78856559 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAA
* * * * * * *
78856623 ATGTAGCTAGGTAACATGCGTGGCT-CTAGGTGAAGGATACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCACATGGGT-GATACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGGGA
78856687 TAA
62 TAA
* * *
78856690 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT
1 ATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGT
78856731 GTAAAAGAGA
Statistics
Matches: 147, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
63 8 0.05
64 84 0.57
65 4 0.03
66 19 0.13
67 32 0.22
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (64 bp):
ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAA
Found at i:78859010 original size:28 final size:29
Alignment explanation
Indices: 78858968--78859082 Score: 137
Period size: 29 Copynumber: 4.0 Consensus size: 29
78858958 TACCTGTATC
* *
78858968 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
78858996 TGGCTCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
78859025 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
78859054 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
78859082 T
1 T
78859083 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 26 0.35
29 48 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:78866145 original size:16 final size:16
Alignment explanation
Indices: 78866124--78866156 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
78866114 CTGACAGATC
78866124 AAGCATCTAGAAACAA
1 AAGCATCTAGAAACAA
78866140 AAGCATCTAGAAACAA
1 AAGCATCTAGAAACAA
78866156 A
1 A
78866157 CTCTGAGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.18, G:0.12, T:0.12
Consensus pattern (16 bp):
AAGCATCTAGAAACAA
Found at i:78871066 original size:53 final size:54
Alignment explanation
Indices: 78870999--78871205 Score: 227
Period size: 53 Copynumber: 3.8 Consensus size: 54
78870989 TTCCTTTTTA
* * *
78870999 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
78871052 AACTTACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * * *
78871106 TAGTTTATCAATGCCATGTCTTGACATCGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
78871161 AACTTACCAATGCCATGCCTTGGCTTGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
78871206 AAACCCTAAT
Statistics
Matches: 124, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 47 0.38
54 36 0.29
55 41 0.33
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:78879029 original size:31 final size:31
Alignment explanation
Indices: 78878989--78879103 Score: 189
Period size: 31 Copynumber: 3.7 Consensus size: 31
78878979 TTAGTCTTGA
78878989 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
78879019 CATATCACTGGGCCGAAGCC-TTCTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTC-CATAAAT
*
78879050 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTCCATAAAT
*
78879081 CATATCACTAGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
78879104 ACTGTAAACG
Statistics
Matches: 80, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
30 8 0.10
31 70 0.88
32 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTCCATAAAT
Found at i:78879174 original size:42 final size:42
Alignment explanation
Indices: 78879127--78879260 Score: 259
Period size: 42 Copynumber: 3.2 Consensus size: 42
78879117 TGGCCCTTAG
78879127 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
78879169 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
*
78879211 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
78879253 GCCCATTT
1 GCCCATTT
78879261 GGGGAGACTA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
Found at i:78879459 original size:25 final size:26
Alignment explanation
Indices: 78879416--78879477 Score: 83
Period size: 25 Copynumber: 2.5 Consensus size: 26
78879406 ATAACTGGAC
*
78879416 CAAAGCCC-TTTCTGATAAACTGGGG
1 CAAAGCCCTTTTCTGATAAACTAGGG
*
78879441 CAAAGCCCTTTTC-GGTAAACTAGGG
1 CAAAGCCCTTTTCTGATAAACTAGGG
*
78879466 CAGAGCCCTTTT
1 CAAAGCCCTTTT
78879478 AGCACTTCCT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 29 0.88
26 4 0.12
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
CAAAGCCCTTTTCTGATAAACTAGGG
Found at i:78880316 original size:27 final size:27
Alignment explanation
Indices: 78880286--78880350 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
78880276 AGGCATATTC
*
78880286 GTCATTTTACCATACAAGGG-TATTATG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
78880313 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
78880340 GTCTTTTTACC
1 GTCATTTTACC
78880351 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:78880434 original size:27 final size:27
Alignment explanation
Indices: 78880401--78880690 Score: 185
Period size: 27 Copynumber: 10.7 Consensus size: 27
78880391 TTGGTAAATC
78880401 TACAAACTAAGGGTATTTCAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
** * *
78880428 TGTAAACCAATGGTATTTCTA-TAATTTT
1 TACAAACTAAGGGTATTTC-AGTAA-TTT
* * * **
78880456 TAGAAAGTCAATGGTATTTTTGTAATTT
1 TACAAACT-AAGGGTATTTCAGTAATTT
** * **
78880484 TGTAAA-TCAGGGATATTTTGGTAATTT
1 TACAAACTAAGGG-TATTTCAGTAATTT
* * * *
78880511 TAAAAATTGAGGATATTTCAGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
*
78880538 CACAAACT-AGTGGTATTTCAGTAATTT
1 TACAAACTAAG-GGTATTTCAGTAATTT
* **
78880565 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
* * *
78880592 TACAAATTGAGGGTATTTCGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
* * * *
78880619 CACAAAC-CAGTGGTATTT-TGATAATCT
1 TACAAACTAAG-GGTATTTCAG-TAATTT
* **
78880646 TACAAACTAGGGGTATTTTGGTAATTT
1 TACAAACTAAGGGTATTTCAGTAATTT
*
78880673 TACAAACTAGGGGTATTT
1 TACAAACTAAGGGTATTT
78880691 TGGTAATCCT
Statistics
Matches: 208, Mismatches: 43, Indels: 24
0.76 0.16 0.09
Matches are distributed among these distances:
26 8 0.04
27 165 0.79
28 22 0.11
29 13 0.06
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (27 bp):
TACAAACTAAGGGTATTTCAGTAATTT
Found at i:78880675 original size:81 final size:81
Alignment explanation
Indices: 78880492--78880697 Score: 299
Period size: 81 Copynumber: 2.5 Consensus size: 81
78880482 TTTGTAAATC
* * * * *
78880492 AGGGATATTTTGGTAATTTTAAAAATTGAGGATATTTCAGTAATTTCACAAACTAGTGGTATTTC
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTC
*
78880557 AGTAATTTTACAAACT
66 AGTAATCTTACAAACT
78880573 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTT-
1 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTC
*
78880637 TGATAATCTTACAAACT
66 AG-TAATCTTACAAACT
* *
78880654 AGGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAAT
1 AGGGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAAT
78880698 CCTATCCTAT
Statistics
Matches: 114, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
80 2 0.02
81 112 0.98
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTC
AGTAATCTTACAAACT
Found at i:78880691 original size:27 final size:27
Alignment explanation
Indices: 78880468--78880697 Score: 232
Period size: 27 Copynumber: 8.5 Consensus size: 27
78880458 GAAAGTCAAT
* **
78880468 GGTATTTTTGTAATTTTGTAAA-TCAGG
1 GGTATTTTGGTAATTTTACAAACT-AGG
* * *
78880495 GATATTTTGGTAATTTTA-AAAATTGAG
1 GGTATTTTGGTAATTTTACAAACTAG-G
* ** * *
78880522 GATATTTCAGTAATTTCACAAACTAGT
1 GGTATTTTGGTAATTTTACAAACTAGG
**
78880549 GGTATTTCAGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
*
78880576 GGTATTTTGGTAATTTTACAAA-TTGAG
1 GGTATTTTGGTAATTTTACAAACTAG-G
* * * *
78880603 GGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAGG
* *
78880630 GGTATTTTGATAATCTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
78880657 GGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGG
78880684 GGTATTTTGGTAAT
1 GGTATTTTGGTAAT
78880698 CCTATCCTAT
Statistics
Matches: 169, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
26 6 0.04
27 157 0.93
28 6 0.04
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAACTAGG
Found at i:78880710 original size:27 final size:27
Alignment explanation
Indices: 78880539--78880718 Score: 150
Period size: 27 Copynumber: 6.7 Consensus size: 27
78880529 CAGTAATTTC
* ** **
78880539 ACAAACTAGTGGTATTTCAGTAATTTT
1 ACAAACTAGGGGTATTTTGGTAATCCT
**
78880566 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACTAGGGGTATTTTGGTAATCCT
* * *
78880593 ACAAA-TTGAGGGTATTTCGGTAAT-TT
1 ACAAACTAG-GGGTATTTTGGTAATCCT
* * * *
78880619 CACAAACCAGTGGTATTTTGATAATCTT
1 -ACAAACTAGGGGTATTTTGGTAATCCT
**
78880647 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACTAGGGGTATTTTGGTAATCCT
78880674 ACAAACTAGGGGTATTTTGGTAATCCT
1 ACAAACTAGGGGTATTTTGGTAATCCT
**
78880701 ATCCTA-TAGGGGTATTTT
1 A-CAAACTAGGGGTATTTT
78880719 AATAATTTCA
Statistics
Matches: 130, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
26 4 0.03
27 121 0.93
28 5 0.04
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
ACAAACTAGGGGTATTTTGGTAATCCT
Found at i:78880725 original size:54 final size:53
Alignment explanation
Indices: 78880531--78880726 Score: 205
Period size: 54 Copynumber: 3.6 Consensus size: 53
78880521 GGATATTTCA
*
78880531 GTAAT-TTCACAAACTAGTGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATCTT-ACAAA-TAGGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTG
* * * * * *
78880585 GTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTG
1 GTAATCTTACAAATAG-GGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTG
* **
78880639 ATAATCTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATCTTACAAA-TAGGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTG
* ** * *
78880693 GTAATCCTATCCTATAGGGGTATTTTAATAATTT
1 GTAATCTTA-CAAATAGGGGTATTTCAGTAATTT
78880727 CATAATCGAG
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
53 2 0.02
54 111 0.93
55 6 0.05
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (53 bp):
GTAATCTTACAAATAGGGGTATTTCAGTAATTTTACAAACTAGGGGTATTTTG
Found at i:78880764 original size:27 final size:27
Alignment explanation
Indices: 78880730--78880927 Score: 220
Period size: 27 Copynumber: 7.3 Consensus size: 27
78880720 ATAATTTCAT
*
78880730 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * *
78880757 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
*
78880784 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * *
78880811 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
* * * *
78880838 AATCGAAGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
78880865 AATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
78880892 AATCGAGGGTAAAATGGTAATTCT-TCA
1 AATCGAGGGTAAAACGATAATTCTGT-A
78880919 AATCGAGGG
1 AATCGAGGG
78880928 CATTTCAGTA
Statistics
Matches: 146, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 143 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:78880794 original size:54 final size:54
Alignment explanation
Indices: 78880730--78880927 Score: 247
Period size: 54 Copynumber: 3.7 Consensus size: 54
78880720 ATAATTTCAT
* *
78880730 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATA
* *
78880784 AATCGAGGGTAAAACAATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * * * * *
78880838 AATCGAAGGTAAAATGGTAATTTTGTAAATCGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* * *
78880892 AATCGAGGGTAAAATGGTAATTCTT-CAAATCGAGGG
1 AATCGAGGGTAAAACGATAATT-TTGTAAATCGAGGG
78880928 CATTTCAGTA
Statistics
Matches: 128, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
54 125 0.98
55 3 0.02
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:78880849 original size:81 final size:80
Alignment explanation
Indices: 78880730--78880924 Score: 284
Period size: 81 Copynumber: 2.4 Consensus size: 80
78880720 ATAATTTCAT
* * * *
78880730 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCT-TAAATC-GAAGGTAAAATGGTAATTTTGTAAATCGAGGGT
*
78880794 AAAACAATAATTCTGTA
64 AAAACAATAATTCTATA
*
78880811 AATCGAGGGTAAAATGGTAATTCTATAAATCGAAGGTAAAATGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCT-TAAATCGAAGGTAAAATGGTAATTTTGTAAATCGAGGGTA
*
78880876 AAACGATAATTCTATA
65 AAACAATAATTCTATA
78880892 AATCGAGGGTAAAATGGTAATTCTTCAAATCGA
1 AATCGAGGGTAAAATGGTAATTCTT-AAATCGA
78880925 GGGCATTTCA
Statistics
Matches: 104, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
80 1 0.01
81 102 0.98
82 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (80 bp):
AATCGAGGGTAAAATGGTAATTCTTAAATCGAAGGTAAAATGGTAATTTTGTAAATCGAGGGTAA
AACAATAATTCTATA
Found at i:78886604 original size:40 final size:40
Alignment explanation
Indices: 78886548--78886722 Score: 246
Period size: 40 Copynumber: 4.4 Consensus size: 40
78886538 GATGATAACT
*
78886548 GGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCC
* * * *
78886588 GGGCTAAGACCTGAAGGTATTTGTACGAGTTGCTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCC
* * *
78886628 GGGCTAAGACCCAAAGGCATTTGTGCAAGTTGCTGTAACC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCC
*
78886668 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATATCC
1 GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCC
78886708 -GGCTAA-ATCCCGAAG
1 GGGCTAAGA-CCCGAAG
78886723 ATACTTGGGT
Statistics
Matches: 120, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 13 0.11
40 106 0.88
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCTATATCC
Found at i:78889573 original size:40 final size:40
Alignment explanation
Indices: 78889385--78889609 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
78889375 TTGAATGATG
* * * *
78889385 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
78889425 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
78889464 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
78889504 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78889544 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
78889585 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78889610 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 39 0.23
40 117 0.70
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78891171 original size:234 final size:234
Alignment explanation
Indices: 78890743--78891209 Score: 605
Period size: 234 Copynumber: 2.0 Consensus size: 234
78890733 TAATTGGCCT
**
78890743 GACCAAAAATTCTAGAAAAAAATATGTAGATGGGCATATGAGTCTAGTTTCAGGGAAAATTTACG
1 GACCAAAAATTCTAGAAAAAAATATGTAGATGGAAATATGAGTCTAGTTTCAGGGAAAATTTACG
* * * ** *
78890808 GAACTGGATTCCGAGTTTCTGAACTCAAGATATAATTTTTAAGGTGACATTGACGCAGTTAGCCA
66 AAACTGGATTCCGAGTTTCTGAACCCAAGATATAATTTTTAAGGTAACAGCGACGCAATTAGCCA
* * * * * *
78890873 ACTGCCTGGAAATTTTTAAAATGGATTGTGCAAAGAAGTGAGATAAGTCTGCAAACCCCCTCGTG
131 ACTGCCTGGAAATTTTTAAAATGGACTGTGAAAAGAAATGAAATAAGTCCGCAAACCACCTCGTG
* *
78890938 TCCGACTCCGGCGACGGACTCGGGTACGGGGTGTTACAC
196 TCCGACTCCAGCAACGGACTCGGGTACGGGGTGTTACAC
* * * * * *
78890977 GACCAAAAATTCTAGAAAACAATTTTTAGATGTAAATATGAGTCTAGTTTCAGGTAAAATTTATG
1 GACCAAAAATTCTAGAAAAAAATATGTAGATGGAAATATGAGTCTAGTTTCAGGGAAAATTTACG
* * * *
78891042 AAACTGGTTTTCGAGTTT-TGGAACCCAAGATATGATTTTTAAGGTAACAGCGACGCAATTATCC
66 AAACTGGATTCCGAGTTTCT-GAACCCAAGATATAATTTTTAAGGTAACAGCGACGCAATTAGCC
* * * * *
78891106 AGCTTGTCTGGAAATTTTTAAAATGGACTGTGAAAATAAATGAAATAAGTCCGTAAA-TACCTCG
130 AAC-TGCCTGGAAATTTTTAAAATGGACTGTGAAAAGAAATGAAATAAGTCCGCAAACCACCTCG
* *
78891170 TGTTCGACTCCAGCAACGGTCTCGGGTACGGGGTGTTACA
194 TGTCCGACTCCAGCAACGGACTCGGGTACGGGGTGTTACA
78891210 ATTTTATTGG
Statistics
Matches: 198, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
233 1 0.01
234 152 0.77
235 45 0.23
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.28
Consensus pattern (234 bp):
GACCAAAAATTCTAGAAAAAAATATGTAGATGGAAATATGAGTCTAGTTTCAGGGAAAATTTACG
AAACTGGATTCCGAGTTTCTGAACCCAAGATATAATTTTTAAGGTAACAGCGACGCAATTAGCCA
ACTGCCTGGAAATTTTTAAAATGGACTGTGAAAAGAAATGAAATAAGTCCGCAAACCACCTCGTG
TCCGACTCCAGCAACGGACTCGGGTACGGGGTGTTACAC
Found at i:78892313 original size:40 final size:40
Alignment explanation
Indices: 78892258--78892434 Score: 277
Period size: 40 Copynumber: 4.5 Consensus size: 40
78892248 CGGATGATAA
*
78892258 CCGGGCTAAGACCCGAAGGAATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
78892298 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * *
78892338 CCGGGCTAAGACTCGAAGGCATTTGTGCAAGTTGCTGTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
78892378 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
78892418 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
78892435 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 13 0.10
40 112 0.89
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:78897403 original size:43 final size:42
Alignment explanation
Indices: 78897355--78897475 Score: 129
Period size: 43 Copynumber: 2.8 Consensus size: 42
78897345 ACCGAGATGT
*
78897355 GATTACATGTAAGACCATGTCTGGGACATTGGCA-TCATTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACA-TGGCATTGA-T-ATGC
* * *
78897398 GATTACATGTAAGACCCTGTTTGGGACAGTGGCATTGATATGT
1 GATTACATGTAAGACCATGTCTGGGACA-TGGCATTGATATGC
* * *
78897441 GATAACATGTAAGACCATATCTGGGATATGGCATT
1 GATTACATGTAAGACCATGTCTGGGACATGGCATT
78897476 CTACGAGTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
42 9 0.14
43 55 0.83
44 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACATGGCATTGATATGC
Found at i:78913069 original size:27 final size:27
Alignment explanation
Indices: 78913039--78913188 Score: 158
Period size: 27 Copynumber: 5.6 Consensus size: 27
78913029 GGCATAATCC
* ** *
78913039 TCATTTTACCATACAAGGATATTACGA
1 TCATTTTACCCTACAAGGGCATTACGG
* * **
78913066 TCATTTTATCCTACAGGGGCATTACAA
1 TCATTTTACCCTACAAGGGCATTACGG
** *
78913093 TCATTTTACCCTTTAAGGGTATTACGG
1 TCATTTTACCCTACAAGGGCATTACGG
* * *
78913120 TCATTTTACCCTATAGGGGCATTAAGG
1 TCATTTTACCCTACAAGGGCATTACGG
78913147 TCATTTTACCCTAC-AGAGGCATTACGG
1 TCATTTTACCCTACAAG-GGCATTACGG
78913174 TCATTTTACCCTACA
1 TCATTTTACCCTACA
78913189 GGGGTAATAC
Statistics
Matches: 101, Mismatches: 20, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 100 0.99
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGGCATTACGG
Found at i:78913097 original size:54 final size:53
Alignment explanation
Indices: 78913039--78913210 Score: 202
Period size: 54 Copynumber: 3.2 Consensus size: 53
78913029 GGCATAATCC
* * *
78913039 TCATTTTACCATACAAGGATATTACGATCATTTTATCCTACAGGGGCATTACAA
1 TCATTTTACCCTACAAGG-TATTACGGTCATTTTACCCTACAGGGGCATTACAA
** * *
78913093 TCATTTTACCCTTTAAGGGTATTACGGTCATTTTACCCTATAGGGGCATTA-AGG
1 TCATTTTACCCTACAA-GGTATTACGGTCATTTTACCCTACAGGGGCATTACA-A
* * *
78913147 TCATTTTACCCTACAGAGGCATTACGGTCATTTTACCCTACAGGGGTAATACAA
1 TCATTTTACCCTACA-AGGTATTACGGTCATTTTACCCTACAGGGGCATTACAA
*
78913201 TTATTTTACC
1 TCATTTTACC
78913211 TATTTTGGGG
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
53 1 0.01
54 94 0.95
55 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (53 bp):
TCATTTTACCCTACAAGGTATTACGGTCATTTTACCCTACAGGGGCATTACAA
Found at i:78913206 original size:27 final size:27
Alignment explanation
Indices: 78913039--78913210 Score: 148
Period size: 27 Copynumber: 6.4 Consensus size: 27
78913029 GGCATAATCC
* * ** *
78913039 TCATTTTACCATACAAGGATATTACGA
1 TCATTTTACCCTACAGGGGCATTACAA
*
78913066 TCATTTTATCCTACAGGGGCATTACAA
1 TCATTTTACCCTACAGGGGCATTACAA
** * * **
78913093 TCATTTTACCCTTTAAGGGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACAA
* *
78913120 TCATTTTACCCTATAGGGGCATTA-AGG
1 TCATTTTACCCTACAGGGGCATTACA-A
* **
78913147 TCATTTTACCCTACAGAGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACAA
* *
78913174 TCATTTTACCCTACAGGGGTAATACAA
1 TCATTTTACCCTACAGGGGCATTACAA
*
78913201 TTATTTTACC
1 TCATTTTACC
78913211 TATTTTGGGG
Statistics
Matches: 117, Mismatches: 26, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
27 117 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACAA
Found at i:78915567 original size:21 final size:22
Alignment explanation
Indices: 78915523--78915568 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
78915513 ATTATGCATC
* *
78915523 CCACCCAAATCCAGCCAGCACA
1 CCACCCAAATCCAACCAACACA
*
78915545 CCACCCATA-CCAACCAACACA
1 CCACCCAAATCCAACCAACACA
78915566 CCA
1 CCA
78915569 TGTGAGGATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.39, C:0.52, G:0.04, T:0.04
Consensus pattern (22 bp):
CCACCCAAATCCAACCAACACA
Found at i:78915880 original size:27 final size:26
Alignment explanation
Indices: 78915850--78915967 Score: 85
Period size: 27 Copynumber: 4.4 Consensus size: 26
78915840 GGCATAATCC
*
78915850 TCATTTTACCATACAGGGATATGACAG
1 TCATTTTACC-TACAGGGACATGACAG
* *
78915877 TCATTTTATCCTACAGGGACATTACGG
1 TCATTTTA-CCTACAGGGACATGACAG
* * *
78915904 TTATTTTACCCTACAGGGGCACT-ACGG
1 TCATTTTA-CCTACAGGGACA-TGACAG
* * * *
78915931 TCATTTTACCCTACTGGAAAATTACAG
1 TCATTTTA-CCTACAGGGACATGACAG
*
78915958 TAATTTTACC
1 TCATTTTACC
78915968 CTATAGAGGT
Statistics
Matches: 75, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
26 3 0.04
27 69 0.92
28 3 0.04
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (26 bp):
TCATTTTACCTACAGGGACATGACAG
Done.