Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 232 of 345
Found at i:78915934 original size:54 final size:54
Alignment explanation
Indices: 78915876--78915997 Score: 145
Period size: 54 Copynumber: 2.3 Consensus size: 54
78915866 GGATATGACA
* * * * * *
78915876 GTCATTTTATCCTACAGGGACATTACGGTTATTTTACCCTACAGGGGCACTACG
1 GTCATTTTACCCTACAGGAAAATTACAGTAATTTTACCCTACAGAGGCACTACG
* * * *
78915930 GTCATTTTACCCTACTGGAAAATTACAGTAATTTTACCCTATAGAGGTATTACG
1 GTCATTTTACCCTACAGGAAAATTACAGTAATTTTACCCTACAGAGGCACTACG
*
78915984 ATCATTTTACCCTA
1 GTCATTTTACCCTA
78915998 TAAGGGCATT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (54 bp):
GTCATTTTACCCTACAGGAAAATTACAGTAATTTTACCCTACAGAGGCACTACG
Found at i:78916008 original size:27 final size:26
Alignment explanation
Indices: 78915877--78916021 Score: 96
Period size: 27 Copynumber: 5.4 Consensus size: 26
78915867 GATATGACAG
* * *
78915877 TCATTTTATCCTACAGGGACATTACGG
1 TCATTTTACCCTATAGGG-CATTACGA
* * * *
78915904 TTATTTTACCCTACAGGGGCACTACGG
1 TCATTTTACCCTATA-GGGCATTACGA
**
78915931 TCATTTTACCCTACT-GGAAAATTAC-A
1 TCATTTTACCCTA-TAGG-GCATTACGA
* *
78915957 GTAATTTTACCCTATAGAGGTATTACGA
1 -TCATTTTACCCTATAG-GGCATTACGA
**
78915985 TCATTTTACCCTATAAGGGCATTATAA
1 TCATTTTACCCTAT-AGGGCATTACGA
78916012 TCATTTTACC
1 TCATTTTACC
78916022 TATTTTAGGG
Statistics
Matches: 94, Mismatches: 16, Indels: 16
0.75 0.13 0.13
Matches are distributed among these distances:
26 3 0.03
27 84 0.89
28 7 0.07
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.35
Consensus pattern (26 bp):
TCATTTTACCCTATAGGGCATTACGA
Found at i:78916612 original size:43 final size:43
Alignment explanation
Indices: 78916551--78916636 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
78916541 ACTTTTCAGG
*
78916551 TAAACCTCAAAATCAGGACTAGACTCGGCATTTAGAGAATCAC
1 TAAACCTCAAAATCAGGACTAGACTCGGCATTCAGAGAATCAC
* *
78916594 TAAACCTCAAAATCAGGACTAGACTCGGCGTTCGGAGAATCAC
1 TAAACCTCAAAATCAGGACTAGACTCGGCATTCAGAGAATCAC
78916637 CTTAGACCTC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (43 bp):
TAAACCTCAAAATCAGGACTAGACTCGGCATTCAGAGAATCAC
Found at i:78922313 original size:41 final size:41
Alignment explanation
Indices: 78922215--78922298 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
78922205 AGCTTTGGTT
* * *
78922215 TTAAAGCGATTTCTAACTCATTTTAATCTAATTAAAAGGTA
1 TTAAAGTGATTTTTAACTCATTTTAATATAATTAAAAGGTA
*
78922256 TTAAAGTGATTTTTAACTCATTTTGATATAATTAAAAGGTA
1 TTAAAGTGATTTTTAACTCATTTTAATATAATTAAAAGGTA
78922297 TT
1 TT
78922299 TGATCTTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.43
Consensus pattern (41 bp):
TTAAAGTGATTTTTAACTCATTTTAATATAATTAAAAGGTA
Found at i:78923145 original size:7 final size:7
Alignment explanation
Indices: 78923133--78923160 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
78923123 GGGTTTTATT
78923133 ATATATA
1 ATATATA
78923140 ATATATA
1 ATATATA
78923147 ATATATA
1 ATATATA
78923154 ATATATA
1 ATATATA
78923161 TGCGCTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
ATATATA
Found at i:78923519 original size:17 final size:17
Alignment explanation
Indices: 78923492--78923534 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
78923482 CATGAGCCAA
* *
78923492 TTATAATTGTGTATTGTG
1 TTAT-ATTGTGAACTGTG
78923510 TTATATTGTGAACTGTG
1 TTATATTGTGAACTGTG
*
78923527 TTAAATTG
1 TTATATTG
78923535 GCAATCTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.26, C:0.02, G:0.21, T:0.51
Consensus pattern (17 bp):
TTATATTGTGAACTGTG
Found at i:78929533 original size:43 final size:44
Alignment explanation
Indices: 78929435--78929556 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 44
78929425 TATTGAGATG
* * * * **
78929435 TGATTGCATGTAAGACCGTGTCTAGGACATTGGCATTGTATTGA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAAA
*
78929479 -GATTACTTGTAAGACCATGTCTGGGACATTGGCATCGT-TAAA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAAA
* * * * *
78929521 TGATTTCATGTAAGACCCTATTTGGGACAGTGGCAT
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCAT
78929557 TGAAATCTGA
Statistics
Matches: 64, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
42 2 0.03
43 62 0.97
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (44 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATAAA
Found at i:78932434 original size:82 final size:81
Alignment explanation
Indices: 78932318--78932473 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
78932308 AAATTGTACA
* * * *
78932318 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
78932382 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
78932399 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
78932464 TGCGAGTTGA
65 TGCGAATTGA
78932474 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:78932441 original size:55 final size:52
Alignment explanation
Indices: 78932317--78932470 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
78932307 TAAATTGTAC
* *
78932317 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
78932370 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
78932425 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
78932471 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:78932475 original size:27 final size:27
Alignment explanation
Indices: 78932318--78932473 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
78932308 AAATTGTACA
*
78932318 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
78932345 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
78932372 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
78932399 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
78932427 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
78932454 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
78932474 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:78932484 original size:27 final size:27
Alignment explanation
Indices: 78932310--78932494 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
78932300 GCGGGATTAA
*
78932310 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
78932337 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
78932364 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
78932391 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
78932419 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
78932446 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
78932473 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
78932495 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:78932485 original size:82 final size:81
Alignment explanation
Indices: 78932310--78932494 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
78932300 GCGGGATTAA
* * * *
78932310 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
78932375 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
78932391 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
78932455 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
78932473 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
78932495 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:78934886 original size:47 final size:46
Alignment explanation
Indices: 78934782--78935184 Score: 263
Period size: 47 Copynumber: 8.7 Consensus size: 46
78934772 TATCCGTACT
* * *
78934782 GATGCATGTCCCAGACATGTCTTACACTAGCATAACTCT-T-A-GTC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTATGAGGCC
* * *
78934826 GATGCGTGTCCCAAACATGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTAT-GAGGCC
* * ** * * *
78934873 GATGCATGTCCCAAACATGTATTAGTCTAGC-ACTCATCTCTG-TGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTA-TC-TCTATGAGGCC
* * * * *
78934919 GATGCCATGTACCAGACATGGTCTTACACTGGCTGTCATATATGTGTGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTATGAG-GCC
* * * * *
78934969 GATGCATGTCCTAGACATTTCTTACACTAGC-A-CAACTATTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATC-TCTATGAGGCC
* * * *
78935013 GATGCGTGTCCGAGACACGTCTTACACTGGCTATCTCTGTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTAT-GAGGCC
* ** * *
78935060 GATGCATGTCCCAAACATGTCTTACTTTGGC-A-CTCATCTCAGTGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCTC-TATGAG-GCC
* *
78935106 GATGCCATGTCCCAGACATGGTCTTACTCTGGC--TCTCATAATGTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTC-T-ATGAGGCC
*
78935154 GAAGCATGTCCCAGACATGTCTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
78935185 GCACAAATCA
Statistics
Matches: 282, Mismatches: 56, Indels: 40
0.75 0.15 0.11
Matches are distributed among these distances:
43 6 0.02
44 57 0.20
45 9 0.03
46 38 0.13
47 98 0.35
48 54 0.19
49 14 0.05
50 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTATGAGGCC
Found at i:78934892 original size:91 final size:91
Alignment explanation
Indices: 78934782--78935181 Score: 344
Period size: 94 Copynumber: 4.3 Consensus size: 91
78934772 TATCCGTACT
* * *
78934782 GATGCATGTCCCAGACATGTCTTACACTAGCATAACTCTTAGTCGATGCGTGTCCCAAACATGTC
1 GATGCATGTCCCAAACATGTCTTACACTAGCATAACTCTTAGCCGATGCGTGTCCCAGACATGTC
78934847 TTACACTGGCTATCTCTGTCGAGGCC
66 TTACACTGGCTATCTCTGTCGAGGCC
* ** * * *
78934873 GATGCATGTCCCAAACATGTATTAGTCTAGCACTCATCTCTGT-GCCGATGCCATGTACCAGACA
1 GATGCATGTCCCAAACATGTCTTACACTAGCA-T-AACTCT-TAGCCGATG-CGTGTCCCAGACA
* * * * *
78934937 TGGTCTTACACTGGCTGTCATATAT-GTGTGCT
62 T-GTCTTACACTGGCTATC-TCTGTCGAG-GCC
* * * * * * *
78934969 GATGCATGTCCTAGACATTTCTTACACTAGCACAACTATTAGCCGATGCGTGTCCGAGACACGTC
1 GATGCATGTCCCAAACATGTCTTACACTAGCATAACTCTTAGCCGATGCGTGTCCCAGACATGTC
78935034 TTACACTGGCTATCTCTGTCGAGGCC
66 TTACACTGGCTATCTCTGTCGAGGCC
** * * * *
78935060 GATGCATGTCCCAAACATGTCTTACTTTGGCACTCA-TCTCAGTGCCGATGCCATGTCCCAGACA
1 GATGCATGTCCCAAACATGTCTTACACTAGCA-TAACTCTTA--GCCGATG-CGTGTCCCAGACA
* * *
78935124 TGGTCTTACTCTGGC--TCTCATAAT-GTGGCC
62 T-GTCTTACACTGGCTATCTC-T-GTCGAGGCC
* *
78935154 GAAGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAAACATGTCTTACACT
78935182 GGCGCACAAA
Statistics
Matches: 241, Mismatches: 52, Indels: 29
0.75 0.16 0.09
Matches are distributed among these distances:
91 62 0.26
92 20 0.08
93 33 0.14
94 64 0.27
95 31 0.13
96 31 0.13
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (91 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCATAACTCTTAGCCGATGCGTGTCCCAGACATGTC
TTACACTGGCTATCTCTGTCGAGGCC
Found at i:78935058 original size:187 final size:186
Alignment explanation
Indices: 78934733--78935181 Score: 677
Period size: 187 Copynumber: 2.4 Consensus size: 186
78934723 ATAAATTACT
* ** *
78934733 GATGCCATGTCCAGACATGGTCTTACACTGGCTCTTATATATCCGTACTGATGCATGTCCCAGAC
1 GATGCCATGTCCAGACATGGTCTTACACTGGCTCTCATATATGTGTGCTGATGCATGTCCCAGAC
* * * *
78934798 ATGTCTTACACTAGCATAACTCTTAGTCGATGCGTGTCCCAAACATGTCTTACACTGGCTATCTC
66 ATGTCTTACACTAGCACAACTATTAGCCGATGCGTGTCCCAAACACGTCTTACACTGGCTATCTC
* *
78934863 TGTCGAGGCCGATGCATGTCCCAAACATGTATTAGTCTAGCACTCATCTCTGTGCC
131 TGTCGAGGCCGATGCATGTCCCAAACATGTATTACTCTAGCACTCATCTCAGTGCC
* *
78934919 GATGCCATGTACCAGACATGGTCTTACACTGGCTGTCATATATGTGTGCTGATGCATGTCCTAGA
1 GATGCCATGT-CCAGACATGGTCTTACACTGGCTCTCATATATGTGTGCTGATGCATGTCCCAGA
* * *
78934984 CATTTCTTACACTAGCACAACTATTAGCCGATGCGTGTCCGAGACACGTCTTACACTGGCTATCT
65 CATGTCTTACACTAGCACAACTATTAGCCGATGCGTGTCCCAAACACGTCTTACACTGGCTATCT
* * *
78935049 CTGTCGAGGCCGATGCATGTCCCAAACATGTCTTACTTTGGCACTCATCTCAGTGCC
130 CTGTCGAGGCCGATGCATGTCCCAAACATGTATTACTCTAGCACTCATCTCAGTGCC
* * *
78935106 GATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCATA-ATGTG-GCCGAAGCATGTCCCAGA
1 GATGCCATGT-CCAGACATGGTCTTACACTGGCTCTCATATATGTGTGCTGATGCATGTCCCAGA
78935169 CATGTCTTACACT
65 CATGTCTTACACT
78935182 GGCGCACAAA
Statistics
Matches: 237, Mismatches: 25, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
185 27 0.11
186 15 0.06
187 195 0.82
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (186 bp):
GATGCCATGTCCAGACATGGTCTTACACTGGCTCTCATATATGTGTGCTGATGCATGTCCCAGAC
ATGTCTTACACTAGCACAACTATTAGCCGATGCGTGTCCCAAACACGTCTTACACTGGCTATCTC
TGTCGAGGCCGATGCATGTCCCAAACATGTATTACTCTAGCACTCATCTCAGTGCC
Found at i:78943354 original size:37 final size:37
Alignment explanation
Indices: 78943293--78943371 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
78943283 TTATTACGAA
* * *
78943293 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
* *
78943330 GTCTTACCCGGATAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
78943367 GTCTT
1 GTCTT
78943372 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:78943568 original size:47 final size:47
Alignment explanation
Indices: 78943490--78943646 Score: 233
Period size: 47 Copynumber: 3.3 Consensus size: 47
78943480 CCCTTCGGGA
* * * * * *
78943490 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78943537 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78943584 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78943631 CTTATCACATATATAC
1 CTTATCACATATATAC
78943647 TTCACATACC
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 98 1.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78946149 original size:47 final size:46
Alignment explanation
Indices: 78946091--78946405 Score: 210
Period size: 47 Copynumber: 6.7 Consensus size: 46
78946081 CTCTGTCGAG
* *
78946091 GCCGATGCATGTCTCAAACATGTCTTACTCTGGCACTCATCTCTGT
1 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGT
* * * *
78946137 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACTCTGGCACTCATCTCT--GT
* * * *
78946187 GCTGATGCATGTCCCAGACATGTCTTACACTAGCA--CAACTCT-T
1 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGT
** * ** * * * *
78946230 AGCTAATGCGTGTCTGAGACACGTCTTACACTGGCTA-TCTATATC-GAG
1 -GCCGATGCATGTCCCAGACATGTCTTACTCTGGC-ACTC-ATCTCTG-T
* * * *
78946278 GGCAATGCATGTCCTAGACATGTCTTACTCTGGCACTCATCTCTAT
1 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGT
* * * **
78946324 ACCAATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCAT-AATGTT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACTCTGGCACTCATCTCTG-T
* **
78946372 GCCGAAGCATGTCCCTTACATGTCTTACTCTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACTCTGGC
78946406 GCACAAATCA
Statistics
Matches: 211, Mismatches: 43, Indels: 30
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.00
44 28 0.13
45 1 0.00
46 35 0.17
47 70 0.33
48 54 0.26
49 14 0.07
50 8 0.04
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACTCTGGCACTCATCTCTGT
Found at i:78946172 original size:48 final size:46
Alignment explanation
Indices: 78946053--78946405 Score: 195
Period size: 47 Copynumber: 7.5 Consensus size: 46
78946043 AACCGATACG
* * *
78946053 TGTCCCAGAAACGTCTTACACTGG--CT-ATCTCTGTCGAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTGGCACTCATCTCTGT----GCCAATGCA
* * * *
78946100 TGTCTCAAACATGTCTTACTCTGGCACTCATCTCTGTGCCGATGCCA
1 TGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTGCCAATG-CA
* * * **
78946147 TGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCA
1 TGTCCCAGACAT-GTCTTACACTGGCACTCATCTCT--GTGCCAATGCA
* * * *
78946196 TGTCCCAGACATGTCTTACACTAGCA--CAACTCT-TAGCTAATGCG
1 TGTCCCAGACATGTCTTACACTGGCACTCATCTCTGT-GCCAATGCA
** * * * *
78946240 TGTCTGAGACACGTCTTACACTGGCTA-TCTATATC-GAGGGCAATGCA
1 TGTCCCAGACATGTCTTACACTGGC-ACTC-ATCTCTG-TGCCAATGCA
* * * *
78946287 TGTCCTAGACATGTCTTACTCTGGCACTCATCTCTATACCAATGCCA
1 TGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTGCCAATG-CA
* * **
78946334 TGTCCCAGACATGGTCTTACTCTGGCTCTCAT-AATGTTGCCGAA-GCA
1 TGTCCCAGACAT-GTCTTACACTGGCACTCATCTCTG-TGCC-AATGCA
** *
78946381 TGTCCCTTACATGTCTTACTCTGGC
1 TGTCCCAGACATGTCTTACACTGGC
78946406 GCACAAATCA
Statistics
Matches: 241, Mismatches: 46, Indels: 39
0.74 0.14 0.12
Matches are distributed among these distances:
43 1 0.00
44 28 0.12
45 1 0.00
46 35 0.15
47 89 0.37
48 53 0.22
49 18 0.07
50 16 0.07
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (46 bp):
TGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTGCCAATGCA
Found at i:78946348 original size:187 final size:185
Alignment explanation
Indices: 78946063--78946399 Score: 514
Period size: 187 Copynumber: 1.8 Consensus size: 185
78946053 TGTCCCAGAA
* * *
78946063 ACGTCTTACACTGGCTATCTCTGTCGAGGCCGATGCATGTCTCAAACATGTCTTACTCTGGCACT
1 ACGTCTTACACTGGCTATCTATATCGAGGCCAATGCATGTCTCAAACATGTCTTACTCTGGCACT
* * * * *
78946128 CATCTCTGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGAT
66 CATCTCTATACCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATG-GTGCCGAA
78946193 GCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCTAATGCGTGTCTGAGAC
129 GCATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCTAATGCGTGTCTGAGAC
* *
78946250 ACGTCTTACACTGGCTATCTATATCGAGGGCAATGCATGTC-CTAGACATGTCTTACTCTGGCAC
1 ACGTCTTACACTGGCTATCTATATCGAGGCCAATGCATGTCTC-AAACATGTCTTACTCTGGCAC
* *
78946314 TCATCTCTATACCAATGCCATGTCCCAGACATGGTCTTACTCTGGCTCTCATAATGTTGCCGAAG
65 TCATCTCTATACCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGGTGCCGAAG
**
78946379 CATGTCCCTTACATGTCTTAC
130 CATGTCCCAGACATGTCTTAC
78946400 TCTGGCGCAC
Statistics
Matches: 135, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
185 25 0.19
186 4 0.03
187 106 0.79
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.30
Consensus pattern (185 bp):
ACGTCTTACACTGGCTATCTATATCGAGGCCAATGCATGTCTCAAACATGTCTTACTCTGGCACT
CATCTCTATACCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGGTGCCGAAGC
ATGTCCCAGACATGTCTTACACTAGCACAACTCTTAGCTAATGCGTGTCTGAGAC
Found at i:78955798 original size:49 final size:49
Alignment explanation
Indices: 78955720--78955958 Score: 307
Period size: 49 Copynumber: 4.8 Consensus size: 49
78955710 GTAGCTGAAG
* *
78955720 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * *
78955769 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AA
* * * * * *
78955819 CCATTTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
* * * *
78955869 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
*
78955919 CAATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
78955959 CATGACCTAA
Statistics
Matches: 160, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 77 0.48
50 46 0.29
51 37 0.23
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:78955907 original size:101 final size:98
Alignment explanation
Indices: 78955734--78955959 Score: 335
Period size: 100 Copynumber: 2.3 Consensus size: 98
78955724 CTGGTACGCA
* * *
78955734 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
* * *
78955799 GTACTACACATGTGACCTAACCATTTGATACACG
66 GTACTACACATGCGACC-AACAATCTGATACACG
* * *
78955833 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
*
78955898 TAGTACTACACATGCGACCAACAATCTGGTACACG
64 TAGTACTACACATGCGACCAACAATCTGATACACG
78955933 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
78955960 ATGACCTAAC
Statistics
Matches: 115, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
99 29 0.25
100 43 0.37
101 43 0.37
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACATGCGACCAACAATCTGATACACG
Found at i:78959592 original size:12 final size:13
Alignment explanation
Indices: 78959575--78959612 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
78959565 ATCCTGGAAT
78959575 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
78959587 ATTAAGAACACATA
1 ATTAAGAACA-AGA
78959601 ATTAAGAACAAG
1 ATTAAGAACAAG
78959613 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:78962242 original size:91 final size:93
Alignment explanation
Indices: 78962068--78962252 Score: 347
Period size: 91 Copynumber: 2.0 Consensus size: 93
78962058 AAAATAAACT
78962068 AAAAGTACTTAAAGAAAATAAATAAAGAAAAAAGTGGAAATAAAAATAAAAAATAAAAAGTCTTT
1 AAAAGTACTTAAAGAAAATAAATAAAGAAAAAAGTGGAAATAAAAATAAAAAATAAAAAGTCTTT
78962133 AAACATCGTCATCGTCGGATGGTTCGCA
66 AAACATCGTCATCGTCGGATGGTTCGCA
*
78962161 AAAAGTACTTAAAG-AAATAAATAAAGATAAAAGTGGAAATAAAAAT-AAAAATAAAAAGTCTTT
1 AAAAGTACTTAAAGAAAATAAATAAAGAAAAAAGTGGAAATAAAAATAAAAAATAAAAAGTCTTT
78962224 AAACATCGTCATCGTCGGATGGTTCGCA
66 AAACATCGTCATCGTCGGATGGTTCGCA
78962252 A
1 A
78962253 GGTGGTGGTG
Statistics
Matches: 91, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
91 46 0.51
92 31 0.34
93 14 0.15
ACGTcount: A:0.53, C:0.10, G:0.15, T:0.22
Consensus pattern (93 bp):
AAAAGTACTTAAAGAAAATAAATAAAGAAAAAAGTGGAAATAAAAATAAAAAATAAAAAGTCTTT
AAACATCGTCATCGTCGGATGGTTCGCA
Found at i:78968204 original size:12 final size:13
Alignment explanation
Indices: 78968187--78968224 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
78968177 ATCTTGGAAT
78968187 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
78968199 ATTAAGAACACATA
1 ATTAAGAACA-AGA
78968213 ATTAAGAACAAG
1 ATTAAGAACAAG
78968225 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:78973816 original size:56 final size:56
Alignment explanation
Indices: 78972736--78973806 Score: 1496
Period size: 56 Copynumber: 19.1 Consensus size: 56
78972726 ACATTTTTTA
**
78972736 GTTGGCATCGATATGTGA-TCTCGATATGTGTGTGTAAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTC-CGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * *
78972792 GTTGGCATCAATATCTGATTCCCATATGTATGTGCGAGTAAGACCACGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* *
78972848 TTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAAACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* *
78972904 GTTGGCATCGATATGTGATTCCAATATGTGTGTGCGAGTAAGACCACGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* *
78972960 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
78973016 GTTGGCATCAATATGTGATTCCGATATTTGTGTGCAAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * *** *
78973072 GTTAGCATCGATATGTGATTCTGATATGTATGCGTTTGTAAGACCATGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * *
78973128 GTTAGCATCAATATGTGATTTCGATATTTGTGTGCGAGTAAGACCAAGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
78973184 GTTGGCATTGGTATGTGATTCCAATATGTGTGTGCGAGTAAGACCACATTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* *
78973240 GTTGGCATCGATATGTGATTCCAATATGTGTGTGCGAGTAAGACCACGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
78973296 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCATGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
78973352 GTTGGCATTGATATGTGATGCCGATATGTGTGTGCGAGTAAGGCCACGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
*
78973408 GTTGGCATCAATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *** *
78973464 GTTAGCATTGATATGTGATTCTGATATGTGTGTGTTTGTAAGCCCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * *
78973520 GTTAGCATCAATATGTGATTTCGATATGTGTGTGCGAGTAAGACCATGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
78973576 GTTGGCATTGGTATGTGATTCCAATATGTGTGTGCGAGTAAGACCACATTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * *
78973632 GTTGGCATCGATATGTGATTCCGATATGTATTTACAAGTAAGACCACGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* *
78973688 GTTGCCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACATTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
78973744 GTTGGCATCGATATGTGATTCCGATATGTGTCTGCGAATATGACCACTTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
78973800 GTTGGCA
1 GTTGGCA
78973807 CTAATATGTG
Statistics
Matches: 897, Mismatches: 117, Indels: 2
0.88 0.12 0.00
Matches are distributed among these distances:
56 895 1.00
57 2 0.00
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (56 bp):
GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
Found at i:78973832 original size:43 final size:43
Alignment explanation
Indices: 78973767--78973849 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
78973757 TGTGATTCCG
* *
78973767 ATATGTGTCTGCGAATATGACCACTTTTAATACGTTGGCACTA
1 ATATGTGTCTGCGAATAAGACCACATTTAATACGTTGGCACTA
* * * *
78973810 ATATGTGTGTGTGAGTAAGACCACATTTAATATGTTGGCA
1 ATATGTGTCTGCGAATAAGACCACATTTAATACGTTGGCA
78973850 TCGATATGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (43 bp):
ATATGTGTCTGCGAATAAGACCACATTTAATACGTTGGCACTA
Found at i:78973857 original size:43 final size:42
Alignment explanation
Indices: 78973765--78973859 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 42
78973755 TATGTGATTC
* *
78973765 CGATATGTGTCTGCGAATATGACCACTTTTAATACGTTGGCA
1 CGATATGTGTCTGCGAATAAGACCACATTTAATACGTTGGCA
* * * * *
78973807 CTAATATGTGTGTGTGAGTAAGACCACATTTAATATGTTGGCA
1 C-GATATGTGTCTGCGAATAAGACCACATTTAATACGTTGGCA
78973850 TCGATATGTG
1 -CGATATGTG
78973860 ATTCCGATAT
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
42 1 0.02
43 41 0.95
44 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (42 bp):
CGATATGTGTCTGCGAATAAGACCACATTTAATACGTTGGCA
Found at i:78973927 original size:99 final size:99
Alignment explanation
Indices: 78973711--78973932 Score: 233
Period size: 99 Copynumber: 2.2 Consensus size: 99
78973701 TGTGATTCCG
*
78973711 ATATGTGTGTG-CGAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCGATATGTGT
1 ATATGTATGTGAC-AGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCGATATGTGT
* * * *
78973775 CTGCGAATATGACCACTTTTAATACGTTGGCACTA
65 CTACGAATAAGACCACTTTGAACACGTTGGCACTA
* ** * *
78973810 ATATGTGTGTGTGAGTAAGACCACATTTAATATGTTGGCATCGATATGTGATTCCGATATGTGTT
1 ATATGTATGTGACAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCGATATGTGTC
*
78973875 TAC-AAGTAAGACC-CTATCTGGAACA-G-TGGCATTA
66 TACGAA-TAAGACCACT-T-T-GAACACGTTGGCACTA
78973909 ATATGTAAT-T-ACATGTAAGACCAC
1 ATATGT-ATGTGACA-GTAAGACCAC
78973933 GTTTGGGACG
Statistics
Matches: 105, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
98 5 0.05
99 94 0.90
100 3 0.03
101 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (99 bp):
ATATGTATGTGACAGTAAGACCACATTTAATACGTTGGCATCGATATGTGATTCCGATATGTGTC
TACGAATAAGACCACTTTGAACACGTTGGCACTA
Found at i:78974232 original size:16 final size:17
Alignment explanation
Indices: 78974200--78974232 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
78974190 ATGTGTGAAA
78974200 AATGTGTATACATATATG
1 AATGTGTATA-ATATATG
78974218 AATGTGTAT-ATATAT
1 AATGTGTATAATATAT
78974233 TCATCTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (17 bp):
AATGTGTATAATATATG
Found at i:78978528 original size:17 final size:19
Alignment explanation
Indices: 78978496--78978530 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
78978486 GGGGCTATTT
78978496 TGGGCCTCGATGGGCCTGA
1 TGGGCCTCGATGGGCCTGA
78978515 TGGGCC-CG-TGGGCCTG
1 TGGGCCTCGATGGGCCTG
78978531 CTTGTGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 2 0.12
19 6 0.38
ACGTcount: A:0.06, C:0.29, G:0.46, T:0.20
Consensus pattern (19 bp):
TGGGCCTCGATGGGCCTGA
Found at i:78979211 original size:22 final size:22
Alignment explanation
Indices: 78979181--78979228 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
78979171 TACGGCCTCT
*
78979181 AGCCATCCTGTCTCTGGTGTTA
1 AGCCATCCTGTCTATGGTGTTA
* *
78979203 AGCCCTCCTGTCTATGGTGTTG
1 AGCCATCCTGTCTATGGTGTTA
78979225 AGCC
1 AGCC
78979229 GTCTTGTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.12, C:0.29, G:0.25, T:0.33
Consensus pattern (22 bp):
AGCCATCCTGTCTATGGTGTTA
Found at i:78982642 original size:22 final size:22
Alignment explanation
Indices: 78982612--78982666 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
78982602 TATGGCCTTT
78982612 AGCCATCCTGTCTACAACATTG
1 AGCCATCCTGTCTACAACATTG
* * *
78982634 AGCCGTCCTGTCTACGACGTTG
1 AGCCATCCTGTCTACAACATTG
78982656 AGCCATCCTGT
1 AGCCATCCTGT
78982667 TGACTTAGTG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27
Consensus pattern (22 bp):
AGCCATCCTGTCTACAACATTG
Found at i:78982858 original size:27 final size:27
Alignment explanation
Indices: 78982807--78982859 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78982797 ACGTCTGATA
* *
78982807 CTGATTCTGTACTGGGCTTAGGCCCAC
1 CTGATTCTGTAATGGGCTTAAGCCCAC
78982834 CTGATTCTGTTAATGGGC-TAAGCCCA
1 CTGATTCTG-TAATGGGCTTAAGCCCA
78982860 ACTATTACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.19, C:0.26, G:0.25, T:0.30
Consensus pattern (27 bp):
CTGATTCTGTAATGGGCTTAAGCCCAC
Found at i:78985817 original size:56 final size:56
Alignment explanation
Indices: 78985729--78986293 Score: 590
Period size: 56 Copynumber: 9.8 Consensus size: 56
78985719 AAATTTTTGA
** * * *
78985729 GTTGGCATCGATATGTGATTTTGATATATGTGTGCGAGTAAGACAACTTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
*
78985785 GTTGGCATCGATATGTGATTCCGACATGTGTGTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
78985841 GTTGGAATCGATATGTGATTCCGATATGTGTGTGTGAGTAAAACCACGTTTAATAT
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * *
78985897 GTTGGCATCGATATGTGATTTCGATATATGTGTGTGAGTAAGACGACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * * ** **
78985953 GTTGGCATCAATAATATGTTTGCATCGATATGTGATTCTGATATGTGTGTGAGAGTAATACCACG
1 GTTGGCATCGAT-ATGTGATT-C--CGATATGTG----TG---TGCGAGT-A-AG-ACCA-C-GT
*
78986018 TTTAATAT
50 TT-AATAC
* * **
78986026 GTTGGCATCGATATGTTATTCCGATATGTGTGTGCGAGTAAGACCATGTTTAGCAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* ** *
78986082 ATTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGAATACATTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * * * * *
78986138 ATTGGCATTGATATATGATTCCGATATATGTGTGCGAGTAAGACCATGTTAAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
**
78986194 GTTGGCATCGATATGTGATTTTGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
* * *
78986250 GTTGGCATCGATATGTGATTCCAATATGTGTTTACGAGTAAGAC
1 GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGAC
78986294 ATTGTCTAGG
Statistics
Matches: 421, Mismatches: 71, Indels: 34
0.80 0.13 0.06
Matches are distributed among these distances:
56 347 0.82
57 8 0.02
59 2 0.00
60 10 0.02
61 1 0.00
62 5 0.01
64 2 0.00
65 2 0.00
67 6 0.01
68 1 0.00
69 11 0.03
70 2 0.00
71 2 0.00
72 7 0.02
73 15 0.04
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (56 bp):
GTTGGCATCGATATGTGATTCCGATATGTGTGTGCGAGTAAGACCACGTTTAATAC
Found at i:78985970 original size:73 final size:73
Alignment explanation
Indices: 78985891--78986034 Score: 218
Period size: 73 Copynumber: 2.0 Consensus size: 73
78985881 AAACCACGTT
* *
78985891 TAATATGTTGGCATCGATATGTGATT-TCGATATATGTGTGTGAGTAAGACGACGTTTAATACGT
1 TAATATGTTGGCATCGATATGTGATTCT-GATATATGTGTGAGAGTAAGACCACGTTTAATACGT
78985955 TGGCATCAA
65 TGGCATCAA
* * * *
78985964 TAATATGTTTGCATCGATATGTGATTCTGATATGTGTGTGAGAGTAATACCACGTTTAATATGTT
1 TAATATGTTGGCATCGATATGTGATTCTGATATATGTGTGAGAGTAAGACCACGTTTAATACGTT
78986029 GGCATC
66 GGCATC
78986035 GATATGTTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 63 0.98
74 1 0.02
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.38
Consensus pattern (73 bp):
TAATATGTTGGCATCGATATGTGATTCTGATATATGTGTGAGAGTAAGACCACGTTTAATACGTT
GGCATCAA
Found at i:78986087 original size:129 final size:129
Alignment explanation
Indices: 78985847--78986090 Score: 380
Period size: 129 Copynumber: 1.9 Consensus size: 129
78985837 ATACGTTGGA
*
78985847 ATCGATATGTGATTCCGATATGTGTGTGTGAGTAAAACCACGTTTAATATGTTGGCATCGATATG
1 ATCGATATGTGATTCCGATATGTGTGTGAGAGTAAAACCACGTTTAATATGTTGGCATCGATATG
* * * * *
78985912 TGATTTCGATATATGTGTGTGAGTAAGACGACGTTTAATACGTTGGCATCAATAATATGTTTGC
66 TGATTCCGATATATGTGTGCGAGTAAGACCACGTTTAACACATTGGCATCAATAATATGTTTGC
* *
78985976 ATCGATATGTGATTCTGATATGTGTGTGAGAGTAATACCACGTTTAATATGTTGGCATCGATATG
1 ATCGATATGTGATTCCGATATGTGTGTGAGAGTAAAACCACGTTTAATATGTTGGCATCGATATG
* * * *
78986041 TTATTCCGATATGTGTGTGCGAGTAAGACCATGTTTAGCACATTGGCATC
66 TGATTCCGATATATGTGTGCGAGTAAGACCACGTTTAACACATTGGCATC
78986091 GATATGTGAT
Statistics
Matches: 103, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 103 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (129 bp):
ATCGATATGTGATTCCGATATGTGTGTGAGAGTAAAACCACGTTTAATATGTTGGCATCGATATG
TGATTCCGATATATGTGTGCGAGTAAGACCACGTTTAACACATTGGCATCAATAATATGTTTGC
Found at i:78986101 original size:185 final size:185
Alignment explanation
Indices: 78985779--78986292 Score: 567
Period size: 185 Copynumber: 2.9 Consensus size: 185
78985769 AGACAACTTT
*
78985779 TAATACGTTGGCATCGATATGTGATTCCGACATGTGTGTGCGAGTAAGACCACGTTTAATACGTT
1 TAATACGTTGGCATCGATATGTGATTCCGACATGTGTGTGAGAGTAAGACCACGTTTAATACGTT
* * **
78985844 GGAATCGATATGTGATTCCGATATGTGTGTGTGAGTAAAACCACGTTTAATATGTTGGCATCGAT
66 GGAATCGATATGTGATTCCGATATGTGTGTGCGAGTAAAACCACGTTTAACACATTGGCATCGAT
* * * * *
78985909 ATGTGATTTCGATATATGTGTGTGAGTAAGACGACGTTTAATACGTTGGCATCAA
131 ATGTGATTCCGATATATGTGTGCGAGTAAGAAGACATTTAATACATTGGCATCAA
* * * * * *
78985964 TAATATGTTTGCATCGATATGTGATTCTGATATGTGTGTGAGAGTAATACCACGTTTAATATGTT
1 TAATACGTTGGCATCGATATGTGATTCCGACATGTGTGTGAGAGTAAGACCACGTTTAATACGTT
* * * * *
78986029 GGCATCGATATGTTATTCCGATATGTGTGTGCGAGTAAGACCATGTTTAGCACATTGGCATCGAT
66 GGAATCGATATGTGATTCCGATATGTGTGTGCGAGTAAAACCACGTTTAACACATTGGCATCGAT
* *
78986094 ATGTGATTCCGATATGTGTGTGCGAGTAAGAATACATTTAATACATTGG---C--
131 ATGTGATTCCGATATATGTGTGCGAGTAAGAAGACATTTAATACATTGGCATCAA
* * * * *
78986144 ----A--TT-G-AT--ATA--TGATTCCGATATATGTGTGCGAGTAAGACCATGTTAAATACGTT
1 TAATACGTTGGCATCGATATGTGATTCCGACATGTGTGTGAGAGTAAGACCACGTTTAATACGTT
* ** * * *
78986197 GGCATCGATATGTGATTTTGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGAT
66 GGAATCGATATGTGATTCCGATATGTGTGTGCGAGTAAAACCACGTTTAACACATTGGCATCGAT
* * * *
78986262 ATGTGATTCCAATATGTGTTTACGAGTAAGA
131 ATGTGATTCCGATATATGTGTGCGAGTAAGA
78986293 CATTGTCTAG
Statistics
Matches: 289, Mismatches: 40, Indels: 17
0.84 0.12 0.05
Matches are distributed among these distances:
168 123 0.43
170 3 0.01
172 2 0.01
173 1 0.00
174 2 0.01
176 1 0.00
182 1 0.00
185 156 0.54
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.35
Consensus pattern (185 bp):
TAATACGTTGGCATCGATATGTGATTCCGACATGTGTGTGAGAGTAAGACCACGTTTAATACGTT
GGAATCGATATGTGATTCCGATATGTGTGTGCGAGTAAAACCACGTTTAACACATTGGCATCGAT
ATGTGATTCCGATATATGTGTGCGAGTAAGAAGACATTTAATACATTGGCATCAA
Found at i:78987551 original size:50 final size:50
Alignment explanation
Indices: 78987484--78987587 Score: 199
Period size: 50 Copynumber: 2.1 Consensus size: 50
78987474 ATATGAATTA
78987484 TGTTAGTAAATTAATCATGATTCGACACTTATATATATAAACATATGATG
1 TGTTAGTAAATTAATCATGATTCGACACTTATATATATAAACATATGATG
*
78987534 TGTTAGTAAATTAATCATGATTCGGCACTTATATATATAAACATATGATG
1 TGTTAGTAAATTAATCATGATTCGACACTTATATATATAAACATATGATG
78987584 TGTT
1 TGTT
78987588 GGTTTGATAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (50 bp):
TGTTAGTAAATTAATCATGATTCGACACTTATATATATAAACATATGATG
Found at i:78988761 original size:40 final size:40
Alignment explanation
Indices: 78988714--78988907 Score: 228
Period size: 40 Copynumber: 4.9 Consensus size: 40
78988704 AGGGGCATGA
*
78988714 AAGTGCAACCAAGGGTACCGAAGTACAAATAGGGGCACAT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* * * * * *
78988754 AATTGCAATAAAGAGTATCGAAGTACAAACAGGGGCACGT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* * *
78988794 AAGTGCAATCAAGGGTATCGAAGAACAAATAGGGGCAAAT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* * *
78988834 AAGTGCAATCAGGGGTACCAAAGTACAAATA-GGGCACGT
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
* * * *
78988873 AAATGCAATCAAAGGTACTGAAGTACAAACAGGGG
1 AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGG
78988908 TACCAAAGTA
Statistics
Matches: 127, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
39 31 0.24
40 96 0.76
ACGTcount: A:0.42, C:0.16, G:0.27, T:0.15
Consensus pattern (40 bp):
AAGTGCAATCAAGGGTACCGAAGTACAAATAGGGGCACAT
Found at i:78988841 original size:80 final size:79
Alignment explanation
Indices: 78988684--78988907 Score: 243
Period size: 80 Copynumber: 2.8 Consensus size: 79
78988674 TATTTTATTT
* * * * * *
78988684 AGAGTGACCAGAGTATAACCAGGGGCATGAAAGTGCAACCAAGGGTACCGAAGTACAAATAGGGG
1 AGAGT-ACCAAAGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTA-CGAAGTACAAATAGGGG
* *
78988749 CACATAATTGCAATAA
64 CAAATAAGTGCAATAA
* * *
78988765 AGAGTATCGAAGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTATCGAAGAACAAATAGGGGC
1 AGAGTACCAAAGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTA-CGAAGTACAAATAGGGGC
*
78988830 AAATAAGTGCAATCA
65 AAATAAGTGCAATAA
* * * * * *
78988845 GGGGTACCAAAGTACAAATA-GGGCACGTAAATGCAATCAAAGGTACTGAAGTACAAACAGGGG
1 AGAGTACCAAAGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTAC-GAAGTACAAATAGGGG
78988908 TACCAAAGTA
Statistics
Matches: 120, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 77 0.64
81 5 0.04
ACGTcount: A:0.42, C:0.16, G:0.28, T:0.15
Consensus pattern (79 bp):
AGAGTACCAAAGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTACGAAGTACAAATAGGGGCA
AATAAGTGCAATAA
Found at i:78988857 original size:20 final size:20
Alignment explanation
Indices: 78988834--78988967 Score: 64
Period size: 20 Copynumber: 6.8 Consensus size: 20
78988824 AGGGGCAAAT
*
78988834 AAGTGCAATCAGGGGTACCA
1 AAGTACAATCAGGGGTACCA
* *
78988854 AAGTACAAAT-A-GGGCACGTA
1 AAGTAC-AATCAGGGGTAC-CA
* ** **
78988874 AA-TGCAATCAAAGGTACTG
1 AAGTACAATCAGGGGTACCA
*
78988893 AAGTACAAACAGGGGTACCA
1 AAGTACAATCAGGGGTACCA
*
78988913 AAGTACAAACAGGGG--CTCA
1 AAGTACAATCAGGGGTAC-CA
* * *
78988932 TAGGTGCAATCAGGGGTACCG
1 -AAGTACAATCAGGGGTACCA
78988953 AAGTACCAAT-AGGGG
1 AAGTA-CAATCAGGGG
78988968 CACATAAGTG
Statistics
Matches: 85, Mismatches: 19, Indels: 20
0.69 0.15 0.16
Matches are distributed among these distances:
18 4 0.05
19 13 0.15
20 59 0.69
21 8 0.09
22 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.15
Consensus pattern (20 bp):
AAGTACAATCAGGGGTACCA
Found at i:78988926 original size:79 final size:80
Alignment explanation
Indices: 78988774--78988927 Score: 188
Period size: 79 Copynumber: 1.9 Consensus size: 80
78988764 AAGAGTATCG
* * * *
78988774 AAGTACAAACAGGGGCACGTAAGTGCAATCAAGGGTATCGAAGAACAAATAGGGGCAAATAAGTG
1 AAGTACAAACAGGGGCACGTAAATGCAATCAAAGGTATCGAAGAACAAACAGGGGCAAATAAGTA
*
78988839 CAATCAGGGGTACCA
66 CAAACAGGGGTACCA
* * * *
78988854 AAGTACAAATA-GGGCACGTAAATGCAATCAAAGGTA-CTGAAGTACAAACAGGGGTACCA-AAG
1 AAGTACAAACAGGGGCACGTAAATGCAATCAAAGGTATC-GAAGAACAAACAGGGGCA-AATAAG
78988916 TACAAACAGGGG
64 TACAAACAGGGG
78988928 CTCATAGGTG
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.02
79 51 0.81
80 11 0.17
ACGTcount: A:0.43, C:0.16, G:0.27, T:0.14
Consensus pattern (80 bp):
AAGTACAAACAGGGGCACGTAAATGCAATCAAAGGTATCGAAGAACAAACAGGGGCAAATAAGTA
CAAACAGGGGTACCA
Found at i:78988957 original size:40 final size:40
Alignment explanation
Indices: 78988902--78988983 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
78988892 GAAGTACAAA
* * *
78988902 CAGGGGTACCAAAGTACAAACAGGGGCTCATAGGTGCAAT
1 CAGGGGTACCAAAGTACAAACAGGGGCACATAAGTGAAAT
* * *
78988942 CAGGGGTACCGAAGTACCAATAGGGGCACATAAGTGAAAT
1 CAGGGGTACCAAAGTACAAACAGGGGCACATAAGTGAAAT
78988982 CA
1 CA
78988984 TTCAATAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.20, G:0.29, T:0.15
Consensus pattern (40 bp):
CAGGGGTACCAAAGTACAAACAGGGGCACATAAGTGAAAT
Found at i:78988958 original size:60 final size:59
Alignment explanation
Indices: 78988834--78988967 Score: 151
Period size: 60 Copynumber: 2.3 Consensus size: 59
78988824 AGGGGCAAAT
* * * * *
78988834 AAGTGCAATCAGGGGTACCAAAGTACAAATAGGGCACGTAAATGCAATCAAAGGTACTG
1 AAGTACAAACAGGGGTACCAAAGTACAAACAGGGCACATAAATGCAATCAAAGGTACCG
* ** **
78988893 AAGTACAAACAGGGGTACCAAAGTACAAACAGGGGCTCATAGGTGCAATCAGGGGTACCG
1 AAGTACAAACAGGGGTACCAAAGTACAAACA-GGGCACATAAATGCAATCAAAGGTACCG
* *
78988953 AAGTACCAATAGGGG
1 AAGTACAAACAGGGG
78988968 CACATAAGTG
Statistics
Matches: 62, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
59 28 0.45
60 34 0.55
ACGTcount: A:0.39, C:0.18, G:0.28, T:0.15
Consensus pattern (59 bp):
AAGTACAAACAGGGGTACCAAAGTACAAACAGGGCACATAAATGCAATCAAAGGTACCG
Found at i:78991506 original size:20 final size:20
Alignment explanation
Indices: 78991457--78991506 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
78991447 ATGACTTATG
*
78991457 CACATAT-AA-ATATATGTA
1 CACATATCAATATATATATA
*
78991475 CTCAT-TCAAATATATATATA
1 CACATATC-AATATATATATA
78991495 CACATATCAATA
1 CACATATCAATA
78991507 CACAAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
17 1 0.04
18 4 0.16
19 2 0.08
20 16 0.64
21 2 0.08
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (20 bp):
CACATATCAATATATATATA
Found at i:78994594 original size:30 final size:30
Alignment explanation
Indices: 78994560--78994619 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
78994550 TTCCCGAGCC
78994560 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
78994590 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
78994620 CGTATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:78995333 original size:49 final size:50
Alignment explanation
Indices: 78995269--78995512 Score: 258
Period size: 49 Copynumber: 4.9 Consensus size: 50
78995259 TATTGTGAGG
* * *
78995269 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGA
* * * * *
78995318 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-AGTTAGA
* * * * *
78995369 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTTAGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGA
* * * * * * *
78995419 TCACGTGTCTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATT-GG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGA
* **
78995468 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
78995513 CTTTAGCTAC
Statistics
Matches: 161, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
49 76 0.47
50 48 0.30
51 37 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGA
Found at i:78997116 original size:28 final size:26
Alignment explanation
Indices: 78997084--78997158 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
78997074 AAGAATAGTT
78997084 AAATTACT-TGAATACCCCTATGTATGAA
1 AAATTACTGT-AATACCCCTA-G-ATGAA
* *
78997112 AAATTACTGTTATACCCCTAGGTGAA
1 AAATTACTGTAATACCCCTAGATGAA
** *
78997138 AAATTACCATTATACCCCTAG
1 AAATTACTGTAATACCCCTAG
78997159 GGGTACTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 17 0.40
29 1 0.02
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.31
Consensus pattern (26 bp):
AAATTACTGTAATACCCCTAGATGAA
Found at i:78997144 original size:26 final size:26
Alignment explanation
Indices: 78997108--78997159 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
78997098 CCCCTATGTA
**
78997108 TGAAAAATTACTGTTATACCCCTAGG
1 TGAAAAATTACCATTATACCCCTAGG
78997134 TGAAAAATTACCATTATACCCCTAGG
1 TGAAAAATTACCATTATACCCCTAGG
78997160 GGTACTTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (26 bp):
TGAAAAATTACCATTATACCCCTAGG
Found at i:78997303 original size:27 final size:26
Alignment explanation
Indices: 78997263--78997374 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
78997253 AGGAAGCGTC
*
78997263 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
78997290 CTGGTGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
78997317 CTGGTGGCTCTGCCACGATTATATGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
78997345 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
78997371 CTGG
1 CTGG
78997375 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.67
28 17 0.24
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:78997367 original size:54 final size:54
Alignment explanation
Indices: 78997263--78997374 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
78997253 AGGAAGCGTC
* **
78997263 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGTTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATATGATCTGGTGACTCTGCCACATATATCTGTT
* * *
78997317 CTGGTGGCTCTGCCACGATTATATGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATATG-ATCTGGTGACTCTGCCACATATATCTGTT
78997371 CTGG
1 CTGG
78997375 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATATGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:78998536 original size:42 final size:43
Alignment explanation
Indices: 78998434--78998550 Score: 152
Period size: 41 Copynumber: 2.8 Consensus size: 43
78998424 TATAAGACAT
* * *
78998434 CAACA-CAGAGCCTGCTAGGTAATAAACCTAAT-TCAATACAC
1 CAACATCAGAGCCTGCTAGGCAATAAGCCTGATATCAATACAC
*
78998475 CAACAT-AAAGCCTGCTAGGCAATAAGCCTGATATC-ATACAC
1 CAACATCAGAGCCTGCTAGGCAATAAGCCTGATATCAATACAC
**
78998516 CGGCATCAGAGCCTGCTAGGCAATAAGCCTGATAT
1 CAACATCAGAGCCTGCTAGGCAATAAGCCTGATAT
78998551 ATCACTGTTA
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
41 37 0.56
42 29 0.44
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.20
Consensus pattern (43 bp):
CAACATCAGAGCCTGCTAGGCAATAAGCCTGATATCAATACAC
Found at i:79001144 original size:27 final size:27
Alignment explanation
Indices: 79001114--79001242 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
79001104 CCTTAATCGA
*
79001114 TAAAATGACTATTTTTCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
79001141 TAAAATAACTATTTTGCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * * * * *
79001168 TAAAATAATTGTTTTGCCCCTATAATG
1 TAAAATGACTATTTTGCCCTTATGAGG
79001195 TAAAATGACTATTTTGCCCTTAT-ATGG
1 TAAAATGACTATTTTGCCCTTATGA-GG
* *
79001222 TAAAATGATTGTTTTGCCCTT
1 TAAAATGACTATTTTGCCCTT
79001243 TTATGGTAAG
Statistics
Matches: 85, Mismatches: 16, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
26 1 0.01
27 84 0.99
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:79001247 original size:27 final size:27
Alignment explanation
Indices: 79001114--79001263 Score: 142
Period size: 27 Copynumber: 5.6 Consensus size: 27
79001104 CCTTAATCGA
* * *
79001114 TAAAATGACTATTTTTCCCTTATGA-GG
1 TAAAATGATTGTTTTGCCCTTAT-ATGG
* * * **
79001141 TAAAATAACTATTTTGCCCTTATGGGG
1 TAAAATGATTGTTTTGCCCTTATATGG
* *
79001168 TAAAATAATTGTTTTGCCCCTATAAT-G
1 TAAAATGATTGTTTTGCCCTTAT-ATGG
* *
79001195 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGATTGTTTTGCCCTTATATGG
*
79001222 TAAAATGATTGTTTTGCCCTTTTATGG
1 TAAAATGATTGTTTTGCCCTTATATGG
*
79001249 TAAGATGATTGTTTT
1 TAAAATGATTGTTTT
79001264 ACCCCTATGT
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
26 2 0.02
27 102 0.98
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.43
Consensus pattern (27 bp):
TAAAATGATTGTTTTGCCCTTATATGG
Found at i:79001251 original size:81 final size:81
Alignment explanation
Indices: 79001114--79001271 Score: 210
Period size: 81 Copynumber: 2.0 Consensus size: 81
79001104 CCTTAATCGA
* *
79001114 TAAAATGACTATTTTTCCCTTATGAGGTAAAATAACTATTTTGCCCTTATGGGGTAAAATAATTG
1 TAAAATGACTATTTTGCCCTTATGAGGTAAAATAACTATTTTGCCCTTATAGGGTAAAATAATTG
*
79001179 TTTTGCCCCTATAATG
66 TTTTACCCCTATAATG
* * * * * * *
79001195 TAAAATGACTATTTTGCCCTTAT-ATGGTAAAATGATTGTTTTGCCCTTTTATGGTAAGATGATT
1 TAAAATGACTATTTTGCCCTTATGA-GGTAAAATAACTATTTTGCCCTTATAGGGTAAAATAATT
79001259 GTTTTACCCCTAT
65 GTTTTACCCCTAT
79001272 GTGATGTATG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
80 1 0.02
81 65 0.98
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (81 bp):
TAAAATGACTATTTTGCCCTTATGAGGTAAAATAACTATTTTGCCCTTATAGGGTAAAATAATTG
TTTTACCCCTATAATG
Found at i:79001652 original size:18 final size:18
Alignment explanation
Indices: 79001611--79001652 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
79001601 ACTGTATTCA
* *
79001611 TTACTATTACTGCAATGT
1 TTACTGTTACCGCAATGT
*
79001629 TTACTGTTACCGCACTGT
1 TTACTGTTACCGCAATGT
79001647 TTACTG
1 TTACTG
79001653 CTACTGTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.14, T:0.43
Consensus pattern (18 bp):
TTACTGTTACCGCAATGT
Found at i:79016914 original size:49 final size:49
Alignment explanation
Indices: 79016851--79017089 Score: 262
Period size: 49 Copynumber: 4.8 Consensus size: 49
79016841 AGGCTATCTA
* *
79016851 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
** ** * ** *
79016900 GTACATGTAGTAGCCTATACTTAGTACTACACACGTGACCTAACCATCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCG
* * * *
79016950 ATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCG
* * * * *
79017001 GTACGCATAGTAGGCTGCACTTAGTACTACACATGCAACCAATTATTCG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
* *
79017050 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
79017090 TCACAATAGA
Statistics
Matches: 153, Mismatches: 34, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
49 72 0.47
50 44 0.29
51 37 0.24
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCG
Found at i:79017082 original size:100 final size:99
Alignment explanation
Indices: 79016856--79017089 Score: 274
Period size: 100 Copynumber: 2.4 Consensus size: 99
79016846 ATCTAGTACG
* * ** *
79016856 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCCTATACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACT
**
79016921 TAGTACTACACACGTGACCTAACCATCTGATACA
66 TAGTACTACACACGCAACCTAACCATCTGATACA
* * * * *
79016955 CATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGGCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACATAGTAGCCTACA
* ** *
79017020 CTTAGTACTACACATGCAACC-AATTAT-TCGGTACA
64 CTTAGTACTACACACGCAACCTAACCATCT-GATACA
*
79017055 CGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
79017090 TCACAATAGA
Statistics
Matches: 114, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
99 33 0.29
100 44 0.39
101 37 0.32
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACATAGTAGCCTACACT
TAGTACTACACACGCAACCTAACCATCTGATACA
Found at i:79017356 original size:27 final size:27
Alignment explanation
Indices: 79017316--79017369 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
79017306 AAGTACAACC
* *
79017316 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
79017343 CATGTAACAATAATTTGTCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
79017370 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:79033060 original size:20 final size:20
Alignment explanation
Indices: 79033025--79033092 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
79033015 CATTTCTATT
* *
79033025 CATATAAACTGTAATTCATC
1 CATATCAACAGTAATTCATC
* * *
79033045 CGTATCAATAGTAATTCATT
1 CATATCAACAGTAATTCATC
*
79033065 CATTTCAACAGTAATTCATC
1 CATATCAACAGTAATTCATC
*
79033085 CATTTCAA
1 CATATCAA
79033093 TATAACTCAT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.37
Consensus pattern (20 bp):
CATATCAACAGTAATTCATC
Found at i:79033315 original size:22 final size:23
Alignment explanation
Indices: 79033260--79033316 Score: 89
Period size: 23 Copynumber: 2.5 Consensus size: 23
79033250 TAAGCTGATT
*
79033260 AACAGTAAGCTCTATTGAGTTGA
1 AACAGTAAGCTCTATCGAGTTGA
*
79033283 AACGGTAAGCTCTATCGAGTTG-
1 AACAGTAAGCTCTATCGAGTTGA
79033305 AACAGTAAGCTC
1 AACAGTAAGCTC
79033317 ATACGAGCTG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
22 11 0.35
23 20 0.65
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (23 bp):
AACAGTAAGCTCTATCGAGTTGA
Found at i:79034943 original size:29 final size:30
Alignment explanation
Indices: 79034905--79034967 Score: 119
Period size: 29 Copynumber: 2.1 Consensus size: 30
79034895 ACATTTCAGG
79034905 TCATCGAATACATTGAAGGTAATTTGTTGA
1 TCATCGAATACATTGAAGGTAATTTGTTGA
79034935 TCAT-GAATACATTGAAGGTAATTTGTTGA
1 TCATCGAATACATTGAAGGTAATTTGTTGA
79034964 TCAT
1 TCAT
79034968 TCATCGTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 29 0.88
30 4 0.12
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (30 bp):
TCATCGAATACATTGAAGGTAATTTGTTGA
Found at i:79038376 original size:40 final size:40
Alignment explanation
Indices: 79038339--79038523 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
79038329 GCTACTCGTC
*
79038339 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
79038379 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
79038419 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
79038458 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
79038499 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
79038524 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.62
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:79038450 original size:79 final size:78
Alignment explanation
Indices: 79038306--79038521 Score: 226
Period size: 79 Copynumber: 2.7 Consensus size: 78
79038296 AAATCACGTA
* * * **
79038306 CCTTCGGAATTTAACCGGATATAGCTACTCGTC-CAAATGCCTTCGGGACATAGCCCGGTTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCG-CACAAATGCCTTCGGGACTTAGCCCGAATATAG
79038370 TAACTCGCACAAATG
64 TAACTCGCACAAATG
*
79038385 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGAA-ATTA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGAATA-TA
*
79038448 GTATCTCGCACAAATG
63 GTAACTCGCACAAATG
* * *
79038464 CCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCG
79038522 GACATCATTC
Statistics
Matches: 117, Mismatches: 12, Indels: 15
0.81 0.08 0.10
Matches are distributed among these distances:
78 4 0.03
79 68 0.58
80 45 0.38
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGAATATAGTA
ACTCGCACAAATG
Found at i:79044545 original size:42 final size:42
Alignment explanation
Indices: 79044453--79044559 Score: 99
Period size: 42 Copynumber: 2.5 Consensus size: 42
79044443 ATAGGTGCTA
* * * * * *
79044453 AACTAAAACCCATAAGGGTTGAACGGAAGCTCATAAAAGCTT
1 AACTGAAACCCATAAGGGTTAAACGAAAGCCCAGAAAAGCTG
* * * *
79044495 AACGGAAACCCGTAAGGGTTAAACTAAAGCCCAGAACAGCTG
1 AACTGAAACCCATAAGGGTTAAACGAAAGCCCAGAAAAGCTG
*
79044537 AACTGAAACTCATTAA-GGTTAAA
1 AACTGAAACCCA-TAAGGGTTAAA
79044560 TGGAAACTCA
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 48 0.94
43 3 0.06
ACGTcount: A:0.43, C:0.20, G:0.20, T:0.18
Consensus pattern (42 bp):
AACTGAAACCCATAAGGGTTAAACGAAAGCCCAGAAAAGCTG
Found at i:79047376 original size:27 final size:27
Alignment explanation
Indices: 79047318--79047406 Score: 108
Period size: 28 Copynumber: 3.2 Consensus size: 27
79047308 AGGAAGCATC
79047318 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
79047346 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
*
79047373 CTGGTGGCACTACCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
79047402 CTGGT
1 CTGGT
79047407 AACTCTGTCA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.42
28 25 0.47
29 6 0.11
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:79054121 original size:8 final size:8
Alignment explanation
Indices: 79054108--79054140 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
79054098 CTAGATCGGC
79054108 AAAAGCCG
1 AAAAGCCG
79054116 AAAAGCCG
1 AAAAGCCG
*
79054124 AAAAGCCA
1 AAAAGCCG
79054132 AAAAGCCG
1 AAAAGCCG
79054140 A
1 A
79054141 TATTTTGGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.55, C:0.24, G:0.21, T:0.00
Consensus pattern (8 bp):
AAAAGCCG
Found at i:79054585 original size:27 final size:27
Alignment explanation
Indices: 79054527--79054616 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
79054517 AGGAAGCGTC
79054527 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
79054555 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
79054582 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
79054611 CTGGTG
1 CTGGTG
79054617 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:79054635 original size:55 final size:56
Alignment explanation
Indices: 79054527--79054641 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
79054517 AGGAAGCGTC
* *
79054527 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
79054582 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
79054638 CTGG
1 CTGG
79054642 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:79056570 original size:18 final size:19
Alignment explanation
Indices: 79056533--79056570 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
79056523 CTAAGTTAGC
*
79056533 TAAAACTAAGAAAACAAAA
1 TAAAACTAACAAAACAAAA
*
79056552 TAAAA-TAACAAAACCAAA
1 TAAAACTAACAAAACAAAA
79056570 T
1 T
79056571 TGTATCAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.71, C:0.13, G:0.03, T:0.13
Consensus pattern (19 bp):
TAAAACTAACAAAACAAAA
Found at i:79062406 original size:15 final size:13
Alignment explanation
Indices: 79062377--79062403 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79062367 GCTCGGTAGG
79062377 GACACGCCCGTGT
1 GACACGCCCGTGT
79062390 GACACGCCCGTGT
1 GACACGCCCGTGT
79062403 G
1 G
79062404 TGATTACTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:79064584 original size:13 final size:13
Alignment explanation
Indices: 79064566--79064590 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79064556 CATTGGTGTA
79064566 CACGGCCATGTTG
1 CACGGCCATGTTG
79064579 CACGGCCATGTT
1 CACGGCCATGTT
79064591 AGTCTCCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.28, T:0.24
Consensus pattern (13 bp):
CACGGCCATGTTG
Found at i:79065742 original size:39 final size:40
Alignment explanation
Indices: 79065699--79065813 Score: 126
Period size: 40 Copynumber: 2.9 Consensus size: 40
79065689 CGGTATAATA
* *
79065699 CCAGCTCGTAGCCTGCAGGTCTCT-AGCCCGAATAACATT
1 CCAGCACGAAGCCTGCAGGTCTCTAAGCCCGAATAACATT
* * * * *
79065738 CCAGCACGAAGCCTCCGGGTTTTTAAGCCCGGATAACATT
1 CCAGCACGAAGCCTGCAGGTCTCTAAGCCCGAATAACATT
* *
79065778 CCAGCACGAAGCCTGC-GGTTCTTTAAGCCCGGATAA
1 CCAGCACGAAGCCTGCAGG-TCTCTAAGCCCGAATAA
79065814 TACCTCAAGT
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 20 0.31
40 45 0.69
ACGTcount: A:0.24, C:0.31, G:0.23, T:0.22
Consensus pattern (40 bp):
CCAGCACGAAGCCTGCAGGTCTCTAAGCCCGAATAACATT
Found at i:79065774 original size:40 final size:40
Alignment explanation
Indices: 79065723--79065813 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
79065713 GCAGGTCTCT
*
79065723 AGCCCGAATAACATTCCAGCACGAAGCCTCCGGGTT-TTTA
1 AGCCCGGATAACATTCCAGCACGAAGCCTCC-GGTTCTTTA
*
79065763 AGCCCGGATAACATTCCAGCACGAAGCCTGCGGTTCTTTA
1 AGCCCGGATAACATTCCAGCACGAAGCCTCCGGTTCTTTA
79065803 AGCCCGGATAA
1 AGCCCGGATAA
79065814 TACCTCAAGT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 4 0.08
40 44 0.92
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
AGCCCGGATAACATTCCAGCACGAAGCCTCCGGTTCTTTA
Found at i:79072469 original size:40 final size:40
Alignment explanation
Indices: 79072364--79072469 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 40
79072354 ACCAGCTTGT
*
79072364 AGCCTGCAGGTCTCT-AGCCCGGATAACATTCCAGCACGA
1 AGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* * * *
79072403 AGCCTGCGGGTTTTTAAGCCCAGATAACATTCTAGCACGA
1 AGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAGCACGA
*
79072443 AGCCTGCAGGTCTTTAAGCCTGGATAA
1 AGCCTGCAGGTCTTTAAGCCCGGATAA
79072470 TACCTCAAGT
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
39 12 0.21
40 45 0.79
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
AGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAGCACGA
Found at i:79079468 original size:92 final size:94
Alignment explanation
Indices: 79079348--79079522 Score: 257
Period size: 94 Copynumber: 1.9 Consensus size: 94
79079338 AGCATATCTG
* * *
79079348 TGTCGATGCCATGTCCCAGACATGGTCTTACAC-TG-ACACAT-CTCGTAGCTGATGCATGTCCC
1 TGTCGATGCCATGTCCCAAACATAGTCTTACACTTGCACACATAAT-GTAGCTGATGCATGTCCC
79079410 AGACATGTCTTACACTAGCACTCGTCTTAA
65 AGACATGTCTTACACTAGCACTCGTCTTAA
* * * *
79079440 TGTCGATGTCATGTCCCAAACATAGTCTTACACTTGCTCTCATAATGTGGCTGATGCATGTCCCA
1 TGTCGATGCCATGTCCCAAACATAGTCTTACACTTGCACACATAATGTAGCTGATGCATGTCCCA
79079505 GACATGTCTTACACTAGC
66 GACATGTCTTACACTAGC
79079523 TCACAATAAC
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
92 30 0.41
93 2 0.03
94 40 0.55
95 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (94 bp):
TGTCGATGCCATGTCCCAAACATAGTCTTACACTTGCACACATAATGTAGCTGATGCATGTCCCA
GACATGTCTTACACTAGCACTCGTCTTAA
Found at i:79079519 original size:46 final size:47
Alignment explanation
Indices: 79079301--79079524 Score: 189
Period size: 50 Copynumber: 4.8 Consensus size: 47
79079291 GGTAAGGTGC
* *
79079301 CGATGTCATGTCCCAGACATGGTCTTACA-TAAGCTCTAGCATATCTGTGT
1 CGATGTCATGTCCCAGACATGGTCTTACACT-AGCTCT--CATA-ATGTGG
* * * * *
79079351 CGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACAT-CTCGTAG
1 CGATGTCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTGG
*
79079396 CTGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCGTCTTAATGT--
1 C-GATGTCATGTCCCAGACATGGTCTTACACTAG--CTC-TCATAATGTGG
* * *
79079443 CGATGTCATGTCCCAAACATAGTCTTACACTTGCTCTCATAATGTGG
1 CGATGTCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGG
79079490 CTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC
1 C-GATGTCATGTCCCAGACATGGTCTTACACTAGCTC
79079525 ACAATAACCT
Statistics
Matches: 146, Mismatches: 14, Indels: 32
0.76 0.07 0.17
Matches are distributed among these distances:
44 12 0.08
45 26 0.18
46 28 0.19
47 28 0.19
48 17 0.12
49 5 0.03
50 29 0.20
51 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (47 bp):
CGATGTCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGG
Found at i:79079662 original size:27 final size:28
Alignment explanation
Indices: 79079632--79079699 Score: 75
Period size: 33 Copynumber: 2.3 Consensus size: 28
79079622 ACAAAATCAA
*
79079632 GCAATTCATGC-TATATTAAATTCAAAT
1 GCAATTCATACATATATTAAATTCAAAT
79079659 GCAATTCAACACATACATATATTAAATTCAAAT
1 GCAATT-----CATACATATATTAAATTCAAAT
79079692 GCAATTCA
1 GCAATTCA
79079700 ACACATACAT
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
27 6 0.18
28 2 0.06
32 4 0.12
33 22 0.65
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (28 bp):
GCAATTCATACATATATTAAATTCAAAT
Found at i:79079680 original size:33 final size:33
Alignment explanation
Indices: 79079643--79079709 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
79079633 CAATTCATGC
79079643 TATATTAAATTCAAATGCAATTCAACACATACA
1 TATATTAAATTCAAATGCAATTCAACACATACA
79079676 TATATTAAATTCAAATGCAATTCAACACATACA
1 TATATTAAATTCAAATGCAATTCAACACATACA
79079709 T
1 T
79079710 TAACATTGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.18, G:0.03, T:0.31
Consensus pattern (33 bp):
TATATTAAATTCAAATGCAATTCAACACATACA
Found at i:79086476 original size:139 final size:139
Alignment explanation
Indices: 79086226--79086509 Score: 568
Period size: 139 Copynumber: 2.0 Consensus size: 139
79086216 TATGAAAATA
79086226 GATTCATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGA
1 GATTCATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGA
79086291 TTTTTCACATTCACGTCACTGCTGCTATCAGCATCTATTTTTAAGGTAGACTTTACCTATTACAT
66 TTTTTCACATTCACGTCACTGCTGCTATCAGCATCTATTTTTAAGGTAGACTTTACCTATTACAT
79086356 AGTTTCCAT
131 AGTTTCCAT
79086365 GATTCATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGA
1 GATTCATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGA
79086430 TTTTTCACATTCACGTCACTGCTGCTATCAGCATCTATTTTTAAGGTAGACTTTACCTATTACAT
66 TTTTTCACATTCACGTCACTGCTGCTATCAGCATCTATTTTTAAGGTAGACTTTACCTATTACAT
79086495 AGTTTCCAT
131 AGTTTCCAT
79086504 GATTCA
1 GATTCA
79086510 ACTAGCCCTT
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
139 145 1.00
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (139 bp):
GATTCATCAAGGTTCGATTACATAATTTATTCACTATTTAATTCCATTCCTACTATTTTTAGTGA
TTTTTCACATTCACGTCACTGCTGCTATCAGCATCTATTTTTAAGGTAGACTTTACCTATTACAT
AGTTTCCAT
Found at i:79087257 original size:40 final size:40
Alignment explanation
Indices: 79087211--79087435 Score: 272
Period size: 40 Copynumber: 5.6 Consensus size: 40
79087201 CTTGCACAAG
* * *
79087211 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
79087251 GCCTTCGGGACTTAGCCCAGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
79087291 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
79087331 GCCTTCGGGTCTTAGCCCAGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
79087371 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
79087412 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
79087436 CATTCGAATA
Statistics
Matches: 155, Mismatches: 27, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.81
41 29 0.19
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:79087306 original size:80 final size:80
Alignment explanation
Indices: 79087175--79087435 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
79087165 CTCAAGAAAT
* * * * * * * *
79087175 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCAGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
79087238 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
79087253 CTTCGGGACTTAGCCCAGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCAGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
79087317 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
79087333 CTTCGGGTCTTAGCCCAGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCAGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
79087398 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
*
79087414 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCAGATAT
79087436 CATTCGAATA
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 94 0.61
81 32 0.21
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCAGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:79087396 original size:120 final size:120
Alignment explanation
Indices: 79087175--79087435 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 120
79087165 CTCAAGAAAT
* * * *
79087175 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCCTTCGGGTCTTAGCCCGGATGTGGTC
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCAGATATAGTC
* * *
79087239 ACTAGCATAAATGCCTTCGGGACTTAGCCCAGATATAGTC-GCTAGCACAAATGC
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTCACCTAGCACAAAAGC
* * *
79087293 CTTCGGGTTTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCCCAGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AAGGCCTTCGGGTCTTAGCCCAGATATAG
* * * * *
79087357 -CAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
64 TC-ACTAGCACAAATGCCTTCGGGA-CTTAGCCCAGATATAGTCACCTAGCACAAAAGC
*
79087414 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
79087436 CATTCGAATA
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 13 0.11
119 20 0.17
120 55 0.46
121 32 0.27
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (120 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGGCCTTCGGGTCTTAGCCCAGATATAGTC
ACTAGCACAAATGCCTTCGGGACTTAGCCCAGATATAGTCACCTAGCACAAAAGC
Found at i:79094403 original size:99 final size:99
Alignment explanation
Indices: 79094201--79094424 Score: 254
Period size: 99 Copynumber: 2.3 Consensus size: 99
79094191 TGAGTTCATG
* * * *
79094201 TGTGTAGTACTAAGTGCAGGCTACTCCGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCACATGTGTAGTACTAAGTG
* * *
79094266 TAGGCTACATGCGTACCCGATAACTTCGATCACG
66 CAGGCTACACGCGTACCCGATAACTTCGATCACA
* ** ** *
79094300 TGTGTAGTACTAAGTGCAGGTTACTACGTATATTAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATT-GGTCACATGTGTAGTACTAAGT
* * * *
79094365 GCAGGCTACTACGTGTACCGGATAA-TT-GGTCGCA
65 GCAGGCTAC-ACGCGTACCCGATAACTTCGATCACA
*
79094399 TGTGTAATACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
79094425 TGCGTACCAG
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
99 62 0.60
100 30 0.29
101 12 0.12
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATAATTGGTCACATGTGTAGTACTAAGTG
CAGGCTACACGCGTACCCGATAACTTCGATCACA
Found at i:79094432 original size:49 final size:50
Alignment explanation
Indices: 79094201--79094437 Score: 246
Period size: 50 Copynumber: 4.8 Consensus size: 50
79094191 TGAGTTCATG
* * *
79094201 TGTGTAGTACTAAGTGCAGGCTACTCCGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * * * * * *
79094250 TGTGTAGTACTAAGTGTAGGCTAC-ATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACA
* * ** ** *
79094300 TGTGTAGTACTAAGTGCAGGTTACTACGTATATTAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* *
79094350 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * *
79094399 TGTGTAATACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
79094438 GCTTTGGCTA
Statistics
Matches: 152, Mismatches: 33, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
48 11 0.07
49 65 0.43
50 69 0.45
51 7 0.05
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
Found at i:79097372 original size:16 final size:16
Alignment explanation
Indices: 79097351--79097386 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
79097341 ATTTTTATAA
79097351 ATATTAAATTATTTAT
1 ATATTAAATTATTTAT
* *
79097367 ATATTATATTTTTTAT
1 ATATTAAATTATTTAT
79097383 ATAT
1 ATAT
79097387 ATTCTATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
ATATTAAATTATTTAT
Found at i:79097401 original size:20 final size:18
Alignment explanation
Indices: 79097342--79097399 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
79097332 GTGAAAAATA
* *
79097342 TTTTTATAAATATTA-AA
1 TTTTTATATATATTATAT
*
79097359 TTATT-TATATATTATAT
1 TTTTTATATATATTATAT
*
79097376 TTTTTATATATATTCTAT
1 TTTTTATATATATTATAT
79097394 TATTTT
1 T-TTTT
79097400 TAATTGTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
16 8 0.24
17 9 0.27
18 12 0.36
19 4 0.12
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTTATATATATTATAT
Found at i:79098180 original size:18 final size:18
Alignment explanation
Indices: 79098161--79098224 Score: 60
Period size: 19 Copynumber: 3.6 Consensus size: 18
79098151 TAAAAAAATA
*
79098161 AAAAATATTTAAAAAT-T
1 AAAAATATTTAAAATTAT
*
79098178 AAACAT-TATTAAAATTATT
1 AAAAATAT-TTAAAATTA-T
* *
79098197 AAAAGTATATAAAATTAT
1 AAAAATATTTAAAATTAT
79098215 AAAAATATTT
1 AAAAATATTT
79098225 TTTAAATTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 7
0.72 0.14 0.14
Matches are distributed among these distances:
16 1 0.03
17 12 0.33
18 9 0.25
19 13 0.36
20 1 0.03
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
AAAAATATTTAAAATTAT
Found at i:79098188 original size:10 final size:9
Alignment explanation
Indices: 79098175--79098220 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
79098165 ATATTTAAAA
79098175 ATTAAACATT
1 ATTAAA-ATT
79098185 ATTAAAATT
1 ATTAAAATT
*
79098194 ATTAAAAGT
1 ATTAAAATT
79098203 ATATAAAATT
1 AT-TAAAATT
*
79098213 ATAAAAAT
1 ATTAAAAT
79098221 ATTTTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 18 0.56
10 14 0.44
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (9 bp):
ATTAAAATT
Found at i:79098191 original size:27 final size:27
Alignment explanation
Indices: 79098142--79098224 Score: 75
Period size: 26 Copynumber: 3.1 Consensus size: 27
79098132 AATTAATTTT
* * *
79098142 TTTAAAAAATAAAAAAATA-AAAAATA
1 TTTAAAAGATATAAAATTATAAAAATA
*
79098168 TTTAAAA-AT-TAAACATTATTAAAAT-
1 TTTAAAAGATATAAA-ATTATAAAAATA
79098193 TATTAAAAGTATATAAAATTATAAAAATA
1 T-TTAAAAG-ATATAAAATTATAAAAATA
79098222 TTT
1 TTT
79098225 TTTAAATTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
24 3 0.07
25 6 0.13
26 18 0.39
28 14 0.30
29 5 0.11
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (27 bp):
TTTAAAAGATATAAAATTATAAAAATA
Found at i:79098979 original size:7 final size:8
Alignment explanation
Indices: 79098964--79099013 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 8
79098954 AATTATAAAA
79098964 ATATTTTT
1 ATATTTTT
79098972 AT-TTTTT
1 ATATTTTT
79098979 ATATTTTT
1 ATATTTTT
79098987 AAAATATTTTT
1 ---ATATTTTT
79098998 A-ATTTTT
1 ATATTTTT
*
79099005 ATAATTTT
1 ATATTTTT
79099013 A
1 A
79099014 AAATAAATTA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
7 14 0.39
8 14 0.39
11 8 0.22
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (8 bp):
ATATTTTT
Found at i:79099017 original size:26 final size:26
Alignment explanation
Indices: 79098944--79099018 Score: 105
Period size: 26 Copynumber: 2.8 Consensus size: 26
79098934 AACAATTAAA
* *
79098944 TAATTTTTAAAATTATAAAAATATTTT
1 TAATTTTTATAATT-TTAAAATATTTT
* *
79098971 TATTTTTTATATTTTTAAAATATTTT
1 TAATTTTTATAATTTTAAAATATTTT
79098997 TAATTTTTATAATTTTAAAATA
1 TAATTTTTATAATTTTAAAATA
79099019 AATTAATTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 31 0.74
27 11 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (26 bp):
TAATTTTTATAATTTTAAAATATTTT
Found at i:79104589 original size:8 final size:7
Alignment explanation
Indices: 79104563--79104588 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
79104553 TATTATTTTA
79104563 AAAAATT
1 AAAAATT
79104570 AAAAATT
1 AAAAATT
79104577 AAAAATT
1 AAAAATT
79104584 AAAAA
1 AAAAA
79104589 AATATCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (7 bp):
AAAAATT
Found at i:79105565 original size:44 final size:43
Alignment explanation
Indices: 79105515--79105600 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 43
79105505 AGAAAAATTA
79105515 ATTTTTGTGAATTAGAAAGAAAAATTATGATTTCTTCTATTTTG
1 ATTTTTGTGAATTAGAAAGAAAAA-TATGATTTCTTCTATTTTG
*
79105559 ATTTTTGTGAATTAGAATGAAAAATATGATTTCTTCTATTTT
1 ATTTTTGTGAATTAGAAAGAAAAATATGATTTCTTCTATTTT
79105601 CTTTCCTCGT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 18 0.44
44 23 0.56
ACGTcount: A:0.34, C:0.05, G:0.13, T:0.49
Consensus pattern (43 bp):
ATTTTTGTGAATTAGAAAGAAAAATATGATTTCTTCTATTTTG
Found at i:79105694 original size:24 final size:24
Alignment explanation
Indices: 79105662--79105707 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
79105652 AATAATTTAC
*
79105662 ATATTTTAT-TAAACTTAAATAAGA
1 ATATATTATATAAA-TTAAATAAGA
*
79105686 ATATATTATATTAATTAAATAA
1 ATATATTATATAAATTAAATAA
79105708 TAATCTTGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (24 bp):
ATATATTATATAAATTAAATAAGA
Found at i:79115024 original size:32 final size:32
Alignment explanation
Indices: 79114980--79115074 Score: 86
Period size: 32 Copynumber: 2.9 Consensus size: 32
79114970 TCAAGCCCAT
*
79114980 TGGGCCTAAGCCC-ATTCAGATAACAGTGATAC
1 TGGGCC-AAGCCCTATTCAGATAACAGTGAAAC
* * *
79115012 TGGGCCAGAGCCCTTTTCAGATTACA-TTAAAC
1 TGGGCCA-AGCCCTATTCAGATAACAGTGAAAC
*
79115044 TGGGCCTTAGCCCCTTATTCAGATAACAGTG
1 TGGGCC-AAG-CCC-TATTCAGATAACAGTG
79115075 TGGCCCATAG
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
31 1 0.02
32 23 0.47
33 13 0.27
34 11 0.22
35 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.26
Consensus pattern (32 bp):
TGGGCCAAGCCCTATTCAGATAACAGTGAAAC
Found at i:79121944 original size:54 final size:54
Alignment explanation
Indices: 79121880--79121983 Score: 208
Period size: 54 Copynumber: 1.9 Consensus size: 54
79121870 ATGATAGCAG
79121880 TACAAGAGGTATCTATGTTAGTTTATTCACCCTTTTTCAAATTTTTATGCGCAC
1 TACAAGAGGTATCTATGTTAGTTTATTCACCCTTTTTCAAATTTTTATGCGCAC
79121934 TACAAGAGGTATCTATGTTAGTTTATTCACCCTTTTTCAAATTTTTATGC
1 TACAAGAGGTATCTATGTTAGTTTATTCACCCTTTTTCAAATTTTTATGC
79121984 CTCGACATGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.44
Consensus pattern (54 bp):
TACAAGAGGTATCTATGTTAGTTTATTCACCCTTTTTCAAATTTTTATGCGCAC
Found at i:79124522 original size:47 final size:47
Alignment explanation
Indices: 79124469--79124566 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
79124459 TTTAGGATTA
* *
79124469 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* * *
79124516 AATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
79124563 AATG
1 AATG
79124567 CGAAATGTGT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:79124670 original size:46 final size:46
Alignment explanation
Indices: 79124540--79124676 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
79124530 GAACATGTAT
* * *
79124540 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATAAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
79124586 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
79124632 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
79124677 TGTATATATA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.35, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:79134969 original size:25 final size:25
Alignment explanation
Indices: 79134940--79134987 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79134930 TAATAACATG
* * *
79134940 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79134965 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79134988 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79135057 original size:20 final size:20
Alignment explanation
Indices: 79135024--79135068 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
79135014 ATTTTGATAA
* *
79135024 ACATGGTATATATGATATGC
1 ACATGATATATATGATAGGC
*
79135044 ACATGATATGTATGATAGGC
1 ACATGATATATATGATAGGC
79135064 ACATG
1 ACATG
79135069 GTGTATTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (20 bp):
ACATGATATATATGATAGGC
Found at i:79135146 original size:24 final size:24
Alignment explanation
Indices: 79135119--79135289 Score: 236
Period size: 24 Copynumber: 7.0 Consensus size: 24
79135109 GGAGGAAGTG
79135119 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
79135143 CAAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
79135168 AAAAAGGGGCTTATGCCCCAGTTAT
1 CAAAA-GGGCTTATGCCCCAGTTAT
79135193 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
79135217 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
79135241 TAAAATGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
79135265 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
79135290 ATGATAAAAC
Statistics
Matches: 135, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
24 96 0.71
25 21 0.16
26 18 0.13
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:79135194 original size:50 final size:49
Alignment explanation
Indices: 79135120--79135269 Score: 257
Period size: 50 Copynumber: 3.1 Consensus size: 49
79135110 GAGGAAGTGC
79135120 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTA
79135169 AAAAGGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT-
1 AAAA-GGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTA
* * *
79135218 AAAAGGGCTTATGCCCCAGTTATTAAAATGGCTTTTGCCCCAGTTATTA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTA
79135267 AAA
1 AAA
79135270 GAGGCTAGGC
Statistics
Matches: 96, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
48 41 0.43
49 11 0.11
50 44 0.46
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTA
Found at i:79135240 original size:74 final size:72
Alignment explanation
Indices: 79135119--79135289 Score: 254
Period size: 74 Copynumber: 2.3 Consensus size: 72
79135109 GGAGGAAGTG
79135119 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAGGGGCTTATGC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT-AAAA-GGGCTTATGC
79135184 CCCAGTTAT
64 CCCAGTTAT
* * *
79135193 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAATGGCTTTTGCCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
79135258 CAGTTAT
66 CAGTTAT
* *
79135265 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
79135290 ATGATAAAAC
Statistics
Matches: 90, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
72 27 0.30
73 15 0.17
74 48 0.53
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (72 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCC
CAGTTAT
Found at i:79141702 original size:21 final size:21
Alignment explanation
Indices: 79141676--79141723 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
79141666 TTGTGCTGAT
79141676 TTTTCTTAAGCAATTCCTCTA
1 TTTTCTTAAGCAATTCCTCTA
*
79141697 TTTTCTTAAGCAATTCCTCTC
1 TTTTCTTAAGCAATTCCTCTA
79141718 TTTTCT
1 TTTTCT
79141724 CTTCCATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.19, C:0.25, G:0.04, T:0.52
Consensus pattern (21 bp):
TTTTCTTAAGCAATTCCTCTA
Found at i:79143120 original size:11 final size:11
Alignment explanation
Indices: 79143086--79143142 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
79143076 GCATGGTATG
79143086 TATGATATGCA
1 TATGATATGCA
* *
79143097 CATGACATG--
1 TATGATATGCA
79143106 TATGATATGCA
1 TATGATATGCA
79143117 TATGATATG--
1 TATGATATGCA
*
79143126 TATGATAGGCA
1 TATGATATGCA
*
79143137 CATGAT
1 TATGAT
79143143 GTATTCATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (11 bp):
TATGATATGCA
Found at i:79143142 original size:20 final size:20
Alignment explanation
Indices: 79143077--79143142 Score: 96
Period size: 20 Copynumber: 3.3 Consensus size: 20
79143067 TTTTGATAAG
*
79143077 CATGGTATGTATGATATGCA
1 CATGATATGTATGATATGCA
*
79143097 CATGACATGTATGATATGCA
1 CATGATATGTATGATATGCA
* *
79143117 TATGATATGTATGATAGGCA
1 CATGATATGTATGATATGCA
79143137 CATGAT
1 CATGAT
79143143 GTATTCATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (20 bp):
CATGATATGTATGATATGCA
Found at i:79143218 original size:24 final size:24
Alignment explanation
Indices: 79143192--79143323 Score: 165
Period size: 24 Copynumber: 5.4 Consensus size: 24
79143182 GAGGAAGTGC
* *
79143192 AAAAAGGCTTATGCCCCAATTATC
1 AAAAAGGCTTATGCCCCAGTTATT
*
79143216 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAAGGCTTATGCCCCAGTTATT
*
79143240 AAAAAAGGGCTTATGCCCTAGTTATT
1 -AAAAA-GGCTTATGCCCCAGTTATT
*
79143266 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAAGGCTTATGCCCCAGTTATT
* * *
79143290 AAAAGGGCTTTTACCCCAGTTATT
1 AAAAAGGCTTATGCCCCAGTTATT
79143314 AAAAGAGGCT
1 AAAA-AGGCT
79143324 AGGCCTCCAA
Statistics
Matches: 95, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
24 65 0.68
25 12 0.13
26 18 0.19
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (24 bp):
AAAAAGGCTTATGCCCCAGTTATT
Found at i:79143270 original size:50 final size:49
Alignment explanation
Indices: 79143192--79143323 Score: 187
Period size: 50 Copynumber: 2.7 Consensus size: 49
79143182 GAGGAAGTGC
* *
79143192 AAAAA-GGCTTATGCCCCAATTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
*
79143240 AAAAAAGGGCTTATGCCCTAGTTATTAAAAGGGCTTATGCCCCAGTTATT
1 -AAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
* *
79143290 -AAAAGGGCTTTTACCCCAGTTATTAAAAGAGGCT
1 AAAAAGGGCTTATGCCCCAGTTATTAAAAG-GGCT
79143324 AGGCCTCCAA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
48 26 0.35
49 9 0.12
50 40 0.53
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (49 bp):
AAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATT
Found at i:79146475 original size:19 final size:22
Alignment explanation
Indices: 79146437--79146484 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 22
79146427 AGACATGAAA
79146437 ATGGTTTGTAGTCAATGTGTAT
1 ATGGTTTGTAGTCAATGTGTAT
79146459 ATGGTTT-T-GTC-ATGTGTA-
1 ATGGTTTGTAGTCAATGTGTAT
79146477 ATTGGTTT
1 A-TGGTTT
79146485 ATTTGCATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.04
19 13 0.52
20 3 0.12
21 1 0.04
22 7 0.28
ACGTcount: A:0.19, C:0.04, G:0.27, T:0.50
Consensus pattern (22 bp):
ATGGTTTGTAGTCAATGTGTAT
Found at i:79147781 original size:15 final size:15
Alignment explanation
Indices: 79147761--79147790 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79147751 ATAATCCTAA
79147761 TAATTATCCTAATAT
1 TAATTATCCTAATAT
79147776 TAATTATCCTAATAT
1 TAATTATCCTAATAT
79147791 AAATAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:79148400 original size:4 final size:4
Alignment explanation
Indices: 79148393--79148425 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
79148383 TTTTATTATT
79148393 TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG T
79148426 TGAACCTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:79151355 original size:4 final size:4
Alignment explanation
Indices: 79151341--79151389 Score: 71
Period size: 4 Copynumber: 11.8 Consensus size: 4
79151331 AAATAAAACA
*
79151341 AAAT AAAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AATAG AAAT AAA
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAA
79151390 ATTTAAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
4 34 0.83
5 7 0.17
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:79157826 original size:15 final size:15
Alignment explanation
Indices: 79157806--79157835 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
79157796 ATAATCCTTA
79157806 TAATTATCCTAATAT
1 TAATTATCCTAATAT
79157821 TAATTATCCTAATAT
1 TAATTATCCTAATAT
79157836 AAATAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:79174332 original size:20 final size:20
Alignment explanation
Indices: 79174294--79174333 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
79174284 AATTATTAAA
*
79174294 CACTTATTCTACATATATGT
1 CACTTATTCCACATATATGT
79174314 CACTTATTCACACAT-TATGT
1 CACTTATTC-CACATATATGT
79174334 AAAATACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.30, C:0.23, G:0.05, T:0.42
Consensus pattern (20 bp):
CACTTATTCCACATATATGT
Found at i:79186583 original size:21 final size:22
Alignment explanation
Indices: 79186543--79186584 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
79186533 GCCTAAATAG
*
79186543 TCACACGGGCGTGTTGCCCCTC
1 TCACACGGGCATGTTGCCCCTC
79186565 TCACACGGGCATG-TGCCCCT
1 TCACACGGGCATGTTGCCCCT
79186585 GTGTTAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.12, C:0.40, G:0.26, T:0.21
Consensus pattern (22 bp):
TCACACGGGCATGTTGCCCCTC
Found at i:79193271 original size:39 final size:42
Alignment explanation
Indices: 79193208--79193305 Score: 121
Period size: 39 Copynumber: 2.4 Consensus size: 42
79193198 ACCAGTTTTG
* * *
79193208 CCGCCACCACCTCCTGTACCTAGAAGTACATCATTACCA-C-
1 CCGCCACCACCTCCTATACATAGAACTACATCATTACCACCA
* *
79193248 CC-CCACCACCTCCTATTCATAGAACTGCATCATTACCACCA
1 CCGCCACCACCTCCTATACATAGAACTACATCATTACCACCA
*
79193289 CCGCCACCACCACCTAT
1 CCGCCACCACCTCCTAT
79193306 GGCACCTTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
39 31 0.63
40 3 0.06
41 2 0.04
42 13 0.27
ACGTcount: A:0.28, C:0.46, G:0.07, T:0.19
Consensus pattern (42 bp):
CCGCCACCACCTCCTATACATAGAACTACATCATTACCACCA
Found at i:79210011 original size:12 final size:12
Alignment explanation
Indices: 79209994--79210018 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79209984 CTGTTACATA
79209994 GCCTATCACACG
1 GCCTATCACACG
79210006 GCCTATCACACG
1 GCCTATCACACG
79210018 G
1 G
79210019 GCTTATGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.40, G:0.20, T:0.16
Consensus pattern (12 bp):
GCCTATCACACG
Found at i:79215494 original size:27 final size:28
Alignment explanation
Indices: 79215464--79215671 Score: 127
Period size: 27 Copynumber: 7.6 Consensus size: 28
79215454 TGGTAAATCT
*
79215464 ACAAACCAAAGGTATTTC-GATAA-TTTC
1 ACAAACCAAGGGTATTTCTG-TAATTTTC
* * *
79215491 ACAAACTAATGGTATTTCTGTAATTTTT
1 ACAAACCAAGGGTATTTCTGTAATTTTC
*
79215519 A-AAAGTCAAGGGTATTTCTGTAATTTTC
1 ACAAA-CCAAGGGTATTTCTGTAATTTTC
*
79215547 -CAAATCAAGGGTATTTC-GATAATTTT-
1 ACAAACCAAGGGTATTTCTG-TAATTTTC
*
79215573 ACAAATC-AGGGATATTT-TGGTAATTTT-
1 ACAAACCAAGGG-TATTTCT-GTAATTTTC
* * * *
79215600 TCTAATCGAGGGTATTT-TGGTAATTTT-
1 ACAAACCAAGGGTATTTCT-GTAATTTTC
**
79215627 GTAAACCAAGGGTATTT-TAGTAATTTT-
1 ACAAACCAAGGGTATTTCT-GTAATTTTC
**
79215654 GTAAACCAAGGGTATTTC
1 ACAAACCAAGGGTATTTC
79215672 AATAATTATA
Statistics
Matches: 155, Mismatches: 15, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.03
27 118 0.76
28 32 0.21
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (28 bp):
ACAAACCAAGGGTATTTCTGTAATTTTC
Done.