Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 233 of 345
Found at i:79215597 original size:54 final size:52
Alignment explanation
Indices: 79215501--79215678 Score: 162
Period size: 54 Copynumber: 3.3 Consensus size: 52
79215491 ACAAACTAAT
79215501 GGTATTTCTG-TAATTTTTAAAAGTCAAGGGTATTTCTGTAATTTTCCAAATCAAG
1 GGTATTTC-GATAA-TTTTAAAA-TCAAGGGTATTT-TGTAATTTTCCAAATCAAG
* * *
79215556 GGTATTTCGATAATTTTACAAATC-AGGGATATTTTGGTAATTTTTCTAATCGAG
1 GGTATTTCGATAATTTTA-AAATCAAGGG-TATTTT-GTAATTTTCCAAATCAAG
* * * * ** *
79215610 GGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAACCAAG
1 GGTATTTCGATAATTTT-AAAATCAAGGGTATTTT-GTAATTTTCCAAATCAAG
*
79215664 GGTATTTCAATAATT
1 GGTATTTCGATAATT
79215679 ATACCCTATA
Statistics
Matches: 101, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
53 5 0.05
54 78 0.77
55 18 0.18
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (52 bp):
GGTATTTCGATAATTTTAAAATCAAGGGTATTTTGTAATTTTCCAAATCAAG
Found at i:79215670 original size:81 final size:81
Alignment explanation
Indices: 79215465--79215671 Score: 197
Period size: 82 Copynumber: 2.5 Consensus size: 81
79215455 GGTAAATCTA
* * * * *
79215465 CAAACCAAAGGTATTTCGATAATTTCACAAACTAATGGTATTTCTGTAATTTTTAAAAGTCAAGG
1 CAAACCAAGGGTATTTAGATAATTTTACAAAC-CAGGGTATTTCTGTAATTTTTAAAAGTCAAGG
79215530 GTATTTCTGTAATTTTC
65 GTATTTCTGTAATTTTC
* * * ** *
79215547 CAAATCAAGGGTATTTCGATAATTTTACAAATCAGGGATATTT-TGGTAATTTTTCTAA-TCGAG
1 CAAACCAAGGGTATTTAGATAATTTTACAAACCAGGG-TATTTCT-GTAATTTTTAAAAGTCAAG
*
79215610 GGTATTT-TGGTAATTTTG
64 GGTATTTCT-GTAATTTTC
* **
79215628 TAAACCAAGGGTATTTTAG-TAATTTTGTAAACCAAGGGTATTTC
1 CAAACCAAGGGTA-TTTAGATAATTTTACAAACC-AGGGTATTTC
79215672 AATAATTATA
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
80 1 0.01
81 50 0.49
82 52 0.50
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (81 bp):
CAAACCAAGGGTATTTAGATAATTTTACAAACCAGGGTATTTCTGTAATTTTTAAAAGTCAAGGG
TATTTCTGTAATTTTC
Found at i:79215677 original size:27 final size:27
Alignment explanation
Indices: 79215620--79215678 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
79215610 GGTATTTTGG
* *
79215620 TAATTTTGTAAACCAAGGGTATTTTAG
1 TAATTTTGTAAACCAAGGGTATTTCAA
79215647 TAATTTTGTAAACCAAGGGTATTTCAA
1 TAATTTTGTAAACCAAGGGTATTTCAA
79215674 TAATT
1 TAATT
79215679 ATACCCTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (27 bp):
TAATTTTGTAAACCAAGGGTATTTCAA
Found at i:79233657 original size:46 final size:46
Alignment explanation
Indices: 79233607--79233779 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
79233597 TTGAGCATCT
79233607 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
79233653 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* *
79233700 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
79233746 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79233780 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:79233760 original size:93 final size:93
Alignment explanation
Indices: 79233601--79233772 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
79233591 GGATGGTTGA
* * *
79233601 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79233666 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
79233694 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
79233759 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
79233773 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79243742 original size:42 final size:42
Alignment explanation
Indices: 79243693--79243806 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
79243683 ACTAAGATTA
*
79243693 CGTGTAAGACCATATCTATGATTTGGCATCGATAAGA-AACC
1 CGTGTAAGACCATATCTAGGATTTGGCATCGATAAGAGAACC
* * * * *
79243734 TCGTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCC
1 -CGTGTAAGACCATATCTAGGAT-TTGGCATCGATAAGAGAACC
* *
79243778 CATGTAAGACCATATCTAGGATATGGCAT
1 CGTGTAAGACCATATCTAGGATTTGGCAT
79243807 TGGTATGGTA
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 24 0.41
43 32 0.54
44 3 0.05
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATATCTAGGATTTGGCATCGATAAGAGAACC
Found at i:79244333 original size:30 final size:30
Alignment explanation
Indices: 79244299--79244361 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
79244289 TTGCCAAATG
79244299 TGTTAGCTTATGATGGTTGATAATTTATTT
1 TGTTAGCTTATGATGGTTGATAATTTATTT
*
79244329 TGTTAGCTTTTGATGGTTGATAATTTATTT
1 TGTTAGCTTATGATGGTTGATAATTTATTT
79244359 TGT
1 TGT
79244362 AAATGGCCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.21, C:0.03, G:0.21, T:0.56
Consensus pattern (30 bp):
TGTTAGCTTATGATGGTTGATAATTTATTT
Found at i:79247891 original size:6 final size:6
Alignment explanation
Indices: 79247880--79247909 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
79247870 TGTGAAGAGA
*
79247880 TTTATT TTTATT TTTATT TTTAGT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT
79247910 ATTTTAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:79249215 original size:40 final size:40
Alignment explanation
Indices: 79249172--79249323 Score: 214
Period size: 40 Copynumber: 3.8 Consensus size: 40
79249162 ATGTGTTCAG
* * *
79249172 GGGTACTGAAGTACAAACAGGGGCACGGATGTGCAAATAG
1 GGGTACCGAAGTACAAACAGGGGCACGAATGTGCAAATAA
* *
79249212 GGGTACCAAAGTACAAACAGGGGCACGAATGTGCAAACAA
1 GGGTACCGAAGTACAAACAGGGGCACGAATGTGCAAATAA
* *
79249252 GGGTATCGAAGTACAAACAGGGGCACAAATGTGCAAATAA
1 GGGTACCGAAGTACAAACAGGGGCACGAATGTGCAAATAA
* * *
79249292 GGGTACCGAAGTACAAATAAGGGCACAAATGT
1 GGGTACCGAAGTACAAACAGGGGCACGAATGT
79249324 ATAAACATTC
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.40, C:0.16, G:0.30, T:0.14
Consensus pattern (40 bp):
GGGTACCGAAGTACAAACAGGGGCACGAATGTGCAAATAA
Found at i:79249314 original size:20 final size:20
Alignment explanation
Indices: 79249169--79249308 Score: 104
Period size: 20 Copynumber: 7.0 Consensus size: 20
79249159 AAAATGTGTT
*
79249169 CAGGGGTACTGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * * *
79249189 CAGGGGCACGGATGTGCAAA
1 CAGGGGTACCGAAGTACAAA
* *
79249209 TAGGGGTACCAAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* *
79249229 CAGGGGCA-CGAATGTGCAAA
1 CAGGGGTACCGAA-GTACAAA
* *
79249249 CAAGGGTATCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
* * *
79249269 CAGGGGCA-CAAATGTGCAAA
1 CAGGGGTACCGAA-GTACAAA
* *
79249289 TAAGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTACAAA
79249309 TAAGGGCACA
Statistics
Matches: 90, Mismatches: 26, Indels: 8
0.73 0.21 0.06
Matches are distributed among these distances:
19 6 0.07
20 77 0.86
21 7 0.08
ACGTcount: A:0.40, C:0.17, G:0.30, T:0.13
Consensus pattern (20 bp):
CAGGGGTACCGAAGTACAAA
Found at i:79260776 original size:28 final size:28
Alignment explanation
Indices: 79260713--79260838 Score: 182
Period size: 28 Copynumber: 4.5 Consensus size: 28
79260703 ATATTAAGTC
*
79260713 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
79260740 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
79260768 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
79260796 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
79260825 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79260839 CAATCTCATG
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.23
28 50 0.56
29 19 0.21
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:79260783 original size:55 final size:57
Alignment explanation
Indices: 79260712--79260838 Score: 186
Period size: 55 Copynumber: 2.3 Consensus size: 57
79260702 TATATTAAGT
* * *
79260712 CCGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGTTATATAA-TCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAATTCAAAC
* * *
79260767 TCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAATTCAAAC
79260824 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
79260839 CAATCTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
55 22 0.35
56 22 0.35
57 19 0.30
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAATTCAAAC
Found at i:79261282 original size:28 final size:28
Alignment explanation
Indices: 79261250--79261306 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
79261240 ATGTTCTTAG
79261250 CTATTCGGCTAATAACCTCATGCAATTA
1 CTATTCGGCTAATAACCTCATGCAATTA
79261278 CTATTCGGCTAATAACCTCATGCAATTA
1 CTATTCGGCTAATAACCTCATGCAATTA
79261306 C
1 C
79261307 CATACTATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (28 bp):
CTATTCGGCTAATAACCTCATGCAATTA
Found at i:79264788 original size:17 final size:17
Alignment explanation
Indices: 79264760--79264793 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
79264750 ATTTGTGAAT
79264760 ATATTGTTACTTCGCTTA
1 ATATTGTTACTT-GCTTA
79264778 ATATT-TTACTTGCTTA
1 ATATTGTTACTTGCTTA
79264794 TTAAAATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 6 0.38
18 5 0.31
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.53
Consensus pattern (17 bp):
ATATTGTTACTTGCTTA
Found at i:79266245 original size:27 final size:27
Alignment explanation
Indices: 79266105--79266315 Score: 244
Period size: 27 Copynumber: 7.8 Consensus size: 27
79266095 ATTACCAAAG
* *
79266105 TACCCCCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
79266132 TA-CCTCCAATTTACATAATTACCGTTT
1 TACCCT-CGATTTACAGAATTACCGTTT
* *
79266159 TACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
79266186 TACCCTCGACTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
79266213 TACCCTCGATTTACAGAAGTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * **
79266240 TACCCTTGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* * *
79266267 TACCATTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
79266294 TACCCTTGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
79266316 TAAAATACCC
Statistics
Matches: 159, Mismatches: 23, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
26 2 0.01
27 155 0.97
28 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:79266324 original size:27 final size:27
Alignment explanation
Indices: 79266294--79266579 Score: 186
Period size: 27 Copynumber: 10.6 Consensus size: 27
79266284 ATTACTGTTT
**
79266294 TACCCTTGATTTACAAAATTACTAAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
* * *
79266321 TACCCTAG-TCTGTAAAATTGCTAAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
* *
79266347 TACCCTTGGTTTGTAAAATTACAAAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
** *
79266374 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
* * *
79266401 TACCCCT-AGTTTGTAAAATTACCAATA
1 TACCCTTGA-TTTGTAAAATTACTAAAA
* * *
79266428 TACCACTAG-TTTGTGAAATTACTGAAA
1 TACC-CTTGATTTGTAAAATTACTAAAA
** *
79266455 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
* * ** *
79266482 TACCCCTAATTTACAAAGTTA-TAGAAA
1 TACCCTTGATTTGTAAAATTACTA-AAA
* *
79266509 TACCCTTGACTTTCTAAAAATTA-TGGAAA
1 TACCCTTGA-TTTGT-AAAATTACT-AAAA
* * ** *
79266538 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGATTTGTAAAATTACTAAAA
* *
79266565 TACCTTTGGTTTGTA
1 TACCCTTGATTTGTA
79266580 GATTTACCAA
Statistics
Matches: 203, Mismatches: 46, Indels: 20
0.75 0.17 0.07
Matches are distributed among these distances:
26 25 0.12
27 153 0.75
28 8 0.04
29 17 0.08
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTTGATTTGTAAAATTACTAAAA
Found at i:79266413 original size:54 final size:53
Alignment explanation
Indices: 79266308--79266486 Score: 216
Period size: 54 Copynumber: 3.3 Consensus size: 53
79266298 CTTGATTTAC
* * * * *
79266308 AAAATTACTAAAATACCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTAGTTTGTAAAATTACTAAAATACCCCTAGTTTGT
* * *
79266361 AAAATTACAAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCT-AGTTTGTAAAATTACTAAAATACCCCTAGTTTGT
* * * *
79266415 AAAATTACCAATATACCACTAGTTTGTGAAATTACTGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACC-CTAGTTTGTAAAATTACTAAAATACCCCT-AGTTTGT
79266469 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
79266487 CTAATTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
53 23 0.21
54 83 0.77
55 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (53 bp):
AAAATTACCAAAATACCCTAGTTTGTAAAATTACTAAAATACCCCTAGTTTGT
Found at i:79266447 original size:81 final size:81
Alignment explanation
Indices: 79266308--79266489 Score: 260
Period size: 81 Copynumber: 2.3 Consensus size: 81
79266298 CTTGATTTAC
* * * *
79266308 AAAATTACTAAAATA-CCCTAGTCTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTACAAA
1 AAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACAAA
79266372 AATACCCTCAATTTGT
66 AATACCCTCAATTTGT
* * * **
79266388 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAATATACCAC-TAGTTTGTGAAATTACTG
1 AAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACC-CTTAGTTTGTAAAATTACAA
79266452 AAATACCCTCAATTTGT
65 AAATACCCTCAATTTGT
79266469 AAAATTACCAAAATACCCCTA
1 AAAATTACCAAAATACCCCTA
79266490 ATTTACAAAG
Statistics
Matches: 91, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 14 0.15
81 76 0.84
82 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGTCTGTAAAATTACCAAAATACCCTTAGTTTGTAAAATTACAAA
AATACCCTCAATTTGT
Found at i:79266660 original size:27 final size:27
Alignment explanation
Indices: 79266630--79266721 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
79266620 ACCCCTATTA
*
79266630 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
*
79266657 GGTAAAGTGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
79266684 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
79266711 GGTAAAATGAC
1 GGTAAAATGAC
79266722 GAATATGCCC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 59 0.98
28 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:79267926 original size:25 final size:25
Alignment explanation
Indices: 79267879--79267926 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79267869 TTATAACATG
* * *
79267879 AAAATGACCATTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79267904 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79267927 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79268188 original size:25 final size:23
Alignment explanation
Indices: 79268040--79268304 Score: 386
Period size: 23 Copynumber: 11.1 Consensus size: 23
79268030 AGGAAGTGAA
79268040 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79268063 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79268086 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79268109 AAAGGGCTTGTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79268132 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79268155 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
79268180 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
*
79268205 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
*
79268230 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT--T
*
79268255 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTAT-T
* * *
79268279 AAAGGGCTTTTGCCCTAGTTACT
1 AAAGGGCTTATGCCCCAGTTATT
79268302 AAA
1 AAA
79268305 AGAGGCTAGG
Statistics
Matches: 231, Mismatches: 9, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
23 115 0.50
24 20 0.09
25 96 0.42
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:79268554 original size:31 final size:31
Alignment explanation
Indices: 79268519--79268582 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
79268509 CGTTTATAGT
* *
79268519 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
**
79268550 AAAGGCTTCGGCCCAATGTTATGAAATATGA
1 AAAGGCTTCGGCCCAATAATATGAAATATGA
79268581 AA
1 AA
79268583 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATAATATGAAATATGA
Found at i:79276491 original size:46 final size:46
Alignment explanation
Indices: 79276395--79276512 Score: 164
Period size: 46 Copynumber: 2.5 Consensus size: 46
79276385 TGAGCTAGTC
* * *
79276395 TAAGACCATGTCTGGGACATGGCATCAACATTGAGACTTGAGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCAACATCGAGACTTAAGCCAGTG
* * *
79276443 TAAGACATGTCTGGGACATGCATCAGCCTCGAGATTTAAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAACATCGAGACTTAAGCCAGTG
79276489 TAAGACATGTCTGGGACATGCATC
1 TAAGACATGTCTGGGACATGCATC
79276513 GGCATCTTAC
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 45 0.70
47 14 0.22
48 5 0.08
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCAACATCGAGACTTAAGCCAGTG
Found at i:79284455 original size:40 final size:40
Alignment explanation
Indices: 79284400--79284536 Score: 206
Period size: 40 Copynumber: 3.5 Consensus size: 40
79284390 CGGATGATAA
79284400 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * *
79284440 CCGGGCTAAGACCCGAAGGCATTTGTGCCAGTTGCTGTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
79284480 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
*
79284520 -CTGGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
79284537 ATACTTGGGT
Statistics
Matches: 88, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
38 1 0.01
39 14 0.16
40 73 0.83
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:79292093 original size:40 final size:40
Alignment explanation
Indices: 79292038--79292174 Score: 215
Period size: 40 Copynumber: 3.5 Consensus size: 40
79292028 CAGATGATAA
79292038 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
79292078 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTGTAA
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
79292118 CCGGGCTAAGACCCGAAGGAATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
79292158 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
79292175 ATACTTGGGT
Statistics
Matches: 90, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 13 0.14
40 76 0.84
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:79296427 original size:17 final size:17
Alignment explanation
Indices: 79296407--79296440 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
79296397 AGCAAAAGAT
79296407 GAGGGACCGAAAAATTG
1 GAGGGACCGAAAAATTG
79296424 GAGGGACCGAAAAATTG
1 GAGGGACCGAAAAATTG
79296441 AAATTATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.35, T:0.12
Consensus pattern (17 bp):
GAGGGACCGAAAAATTG
Found at i:79307025 original size:40 final size:40
Alignment explanation
Indices: 79306948--79307162 Score: 328
Period size: 40 Copynumber: 5.4 Consensus size: 40
79306938 AAACCAAGTA
* * *
79306948 CCTTCGGGATTTAG-CCGAATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
79306987 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79307027 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACATATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79307067 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79307107 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
79307147 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
79307163 TGGTTACCAT
Statistics
Matches: 165, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 15 0.09
40 150 0.91
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79308482 original size:24 final size:24
Alignment explanation
Indices: 79308455--79308512 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
79308445 TTTTCATCAC
79308455 CCTTTCATTTTCTTCT-TTTATTAT
1 CCTTTCATTTTCTTCTATTTATT-T
* *
79308479 CCTTATTA-TTTCTTTTATTTATTT
1 CCTT-TCATTTTCTTCTATTTATTT
79308503 CCTTTC-TTTT
1 CCTTTCATTTT
79308513 ACATAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
23 4 0.14
24 16 0.57
25 8 0.29
ACGTcount: A:0.12, C:0.19, G:0.00, T:0.69
Consensus pattern (24 bp):
CCTTTCATTTTCTTCTATTTATTT
Found at i:79311568 original size:24 final size:24
Alignment explanation
Indices: 79311541--79311590 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
79311531 GGTGCACCCC
79311541 AAGGTGAGAAACTTGGTCGAGCGA
1 AAGGTGAGAAACTTGGTCGAGCGA
79311565 AAGGTGAGAAACTTGGTCGAGCGA
1 AAGGTGAGAAACTTGGTCGAGCGA
79311589 AA
1 AA
79311591 CCTCTATCCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.12, G:0.36, T:0.16
Consensus pattern (24 bp):
AAGGTGAGAAACTTGGTCGAGCGA
Found at i:79313677 original size:40 final size:40
Alignment explanation
Indices: 79313615--79313798 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
79313605 TATTCGAATG
*
79313615 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
79313655 ATATCCGGACTGAGATCTGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCT-AG-TGACT
* * * *
79313695 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
79313735 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
79313775 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
79313799 CTTGTGCGAG
Statistics
Matches: 120, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
39 2 0.02
40 114 0.95
41 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:79313757 original size:80 final size:79
Alignment explanation
Indices: 79313615--79313834 Score: 250
Period size: 80 Copynumber: 2.8 Consensus size: 79
79313605 TATTCGAATG
* * * * * *
79313615 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTGAGAT-CTGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAG-TCCCGAAGGC
* *
79313679 ATTTGTG-TGAGTTG-CT
64 ATTTATGCT-AG-TGACC
*
79313695 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCA
79313760 TTTATGCTAGTGACC
65 TTTATGCTAGTGACC
* * * *
79313775 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAG
79313835 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
78 14 0.11
79 20 0.16
80 87 0.71
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGATTATATCCGGGCTAAGTCCCGAAGGCAT
TTATGCTAGTGACC
Found at i:79318471 original size:40 final size:40
Alignment explanation
Indices: 79318400--79318617 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
79318390 AAACCAAGTA
* *
79318400 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
79318439 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79318479 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79318519 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79318559 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
79318599 CCTTCGGGACTTAACCCGG
1 CCTTCGGGACTTAGCCCGG
79318618 TTACCATCCG
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 15 0.09
40 151 0.91
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79325869 original size:37 final size:37
Alignment explanation
Indices: 79325806--79325951 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
79325796 AGCTCAGATG
* * *
79325806 AAATCTCCACACGAAGTTATCAGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79325843 AAATCTCCACACGTAGTCCTCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
79325880 TAATCTCCACACGTAGTCCTCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
79325917 TAATCTCCACACGTAGTCATCGGGACTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79325952 ATATATTTCC
Statistics
Matches: 102, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79326164 original size:48 final size:48
Alignment explanation
Indices: 79326098--79326584 Score: 866
Period size: 48 Copynumber: 10.1 Consensus size: 48
79326088 ACACATCGCC
*
79326098 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
79326146 TACAGACTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
79326196 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79326244 TACATATTTCACATTAGCCATTCGGCTTTACTACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79326292 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79326340 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79326388 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79326436 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79326484 TACATATTTCACATTAGCCATTCGACTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79326532 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79326580 TACAT
1 TACAT
79326585 CAATTTCCGC
Statistics
Matches: 421, Mismatches: 16, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
48 377 0.90
50 44 0.10
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:79329869 original size:17 final size:17
Alignment explanation
Indices: 79329847--79329880 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79329837 CACTAACACT
*
79329847 AAAATGTAATGACAATG
1 AAAATGCAATGACAATG
79329864 AAAATGCAATGACAATG
1 AAAATGCAATGACAATG
79329881 TATACTTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.09, G:0.18, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATG
Found at i:79331891 original size:43 final size:43
Alignment explanation
Indices: 79331823--79332355 Score: 448
Period size: 43 Copynumber: 12.5 Consensus size: 43
79331813 GAAATCTGAG
* *
79331823 CTCATTGAGTGGTCCGACTTCGTGATATATGTGAGAATCCGAA
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
** * *
79331866 CTTGTTGAGTGGTCCAAGTTTGTGATATATGT-AGCATCC-AA
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
* * ** * *
79331907 GCTCATTGAGTGGTCCGAGTTCATTATGGATGCGAGCAT-CTAA
1 -CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
*
79331950 GCTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGAATCCGAA
1 -CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
** *
79331994 CTTGTTGAGTGGTCCAAGTTCGTGATATATGT-AGCATCCGAA
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
* * * ** ** *
79332036 CTCATTGAATGGTCCGAGTTCATTATGGATGCAAGCATCCGAG
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
** * * *
79332079 CTCATTGAGTGGTATGAGTTCATGATATATGTGAGAATCCAAA
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
** * * *
79332122 CTTGTTGAGTGGTCCAAGTTCGTGATATATGT-AGCACCCGAG
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
* * * ** ** *
79332164 CTCATTGAGTGGTCTGAGTTCATTATGGATACGAGCATCCGAG
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
* **
79332207 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGAATCTAAA
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
** * * * *
79332250 CTTGTTGAGTGGTCCAAGTTCATGATATATGT-AGCATCTGAG
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
* * * * * ** * *
79332292 CTCGTTTAGTGGTCCGGGTTCATTATGGATGCGAGCATCCGAG
1 CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
**
79332335 CTTGTTGAGTGGTCCGAGTTC
1 CTCATTGAGTGGTCCGAGTTC
79332356 ATAATGGATG
Statistics
Matches: 385, Mismatches: 98, Indels: 14
0.77 0.20 0.03
Matches are distributed among these distances:
41 2 0.01
42 121 0.31
43 259 0.67
44 3 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
CTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGCATCCGAA
Found at i:79332049 original size:128 final size:128
Alignment explanation
Indices: 79331820--79332355 Score: 840
Period size: 128 Copynumber: 4.2 Consensus size: 128
79331810 TAAGAAATCT
* *
79331820 GAGCTCATTGAGTGGTCCGACTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCCAAGT
1 GAGCTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGAATCCAAACTTGTTGAGTGGTCCAAGT
* *
79331885 TTGTGATATATGTAGCATCC-AAGCTCATTGAGTGGTCCGAGTTCATTATGGATGCGAGCATCT
66 TCGTGATATATGTAGCATCCGAA-CTCATTGAGTGGTCCGAGTTCATTATGGATGCGAGCATCC
* *
79331948 AAGCTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGAATCCGAACTTGTTGAGTGGTCCAAGT
1 GAGCTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGAATCCAAACTTGTTGAGTGGTCCAAGT
* *
79332013 TCGTGATATATGTAGCATCCGAACTCATTGAATGGTCCGAGTTCATTATGGATGCAAGCATCC
66 TCGTGATATATGTAGCATCCGAACTCATTGAGTGGTCCGAGTTCATTATGGATGCGAGCATCC
** *
79332076 GAGCTCATTGAGTGGTATGAGTTCATGATATATGTGAGAATCCAAACTTGTTGAGTGGTCCAAGT
1 GAGCTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGAATCCAAACTTGTTGAGTGGTCCAAGT
* * * *
79332141 TCGTGATATATGTAGCACCCGAGCTCATTGAGTGGTCTGAGTTCATTATGGATACGAGCATCC
66 TCGTGATATATGTAGCATCCGAACTCATTGAGTGGTCCGAGTTCATTATGGATGCGAGCATCC
*
79332204 GAGCTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGAATCTAAACTTGTTGAGTGGTCCAAGT
1 GAGCTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGAATCCAAACTTGTTGAGTGGTCCAAGT
* * * * * *
79332269 TCATGATATATGTAGCATCTGAGCTCGTTTAGTGGTCCGGGTTCATTATGGATGCGAGCATCC
66 TCGTGATATATGTAGCATCCGAACTCATTGAGTGGTCCGAGTTCATTATGGATGCGAGCATCC
**
79332332 GAGCTTGTTGAGTGGTCCGAGTTC
1 GAGCTCATTGAGTGGTCCGAGTTC
79332356 ATAATGGATG
Statistics
Matches: 376, Mismatches: 31, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
128 374 0.99
129 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (128 bp):
GAGCTCATTGAGTGGTCCGAGTTCGTGATATATGTGAGAATCCAAACTTGTTGAGTGGTCCAAGT
TCGTGATATATGTAGCATCCGAACTCATTGAGTGGTCCGAGTTCATTATGGATGCGAGCATCC
Found at i:79332406 original size:51 final size:51
Alignment explanation
Indices: 79332330--79332426 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 51
79332320 ATGCGAGCAT
* *
79332330 CCGAGCTTGTTGAGTGGTCCGAGTTCATAATGGATGCGATACATGTAACAC
1 CCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGATACATGTAACAC
* * *
79332381 CCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATGTGTTACATGT
1 CCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGATACATGT
79332427 TATATGGTAG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (51 bp):
CCGAGCTCGTTGAGAGGTCCGAGTTCATAATGGATGCGATACATGTAACAC
Found at i:79349034 original size:25 final size:25
Alignment explanation
Indices: 79349000--79349051 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
79348990 TAACATCATC
79349000 ATACTTTCCATCATATCATATATAT
1 ATACTTTCCATCATATCATATATAT
79349025 ATACTTTCCATCATATCATATATAT
1 ATACTTTCCATCATATCATATATAT
79349050 AT
1 AT
79349052 GTCTCTCCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.19, G:0.00, T:0.44
Consensus pattern (25 bp):
ATACTTTCCATCATATCATATATAT
Found at i:79356274 original size:47 final size:47
Alignment explanation
Indices: 79356198--79356398 Score: 296
Period size: 47 Copynumber: 4.3 Consensus size: 47
79356188 CTTCGGGACT
* * * * * *
79356198 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
79356245 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
79356291 TCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
79356339 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
79356386 TATCACATATATA
1 TATCACATATATA
79356399 TATACATTCA
Statistics
Matches: 141, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
46 3 0.02
47 136 0.96
48 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:79360856 original size:40 final size:40
Alignment explanation
Indices: 79360812--79361003 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
79360802 ATAACCACAA
* * *
79360812 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
79360852 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
79360892 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
79360932 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
79360972 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
79361004 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:79366485 original size:82 final size:81
Alignment explanation
Indices: 79366369--79366524 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
79366359 AAATTGTACA
* * * *
79366369 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
79366433 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79366450 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
79366515 TGCGAGTTGA
65 TGCGAATTGA
79366525 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79366492 original size:55 final size:52
Alignment explanation
Indices: 79366368--79366521 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
79366358 TAAATTGTAC
* *
79366368 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
79366421 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
79366476 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
79366522 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:79366526 original size:27 final size:27
Alignment explanation
Indices: 79366369--79366524 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
79366359 AAATTGTACA
*
79366369 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
79366396 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
79366423 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
79366450 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
79366478 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
79366505 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
79366525 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:79366535 original size:27 final size:27
Alignment explanation
Indices: 79366361--79366545 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
79366351 GCGGGATTAA
*
79366361 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
79366388 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
79366415 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
79366442 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
79366470 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
79366497 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
79366524 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
79366546 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:79366536 original size:82 final size:81
Alignment explanation
Indices: 79366361--79366545 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
79366351 GCGGGATTAA
* * * *
79366361 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
79366426 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
79366442 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
79366506 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
79366524 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
79366546 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:79371288 original size:82 final size:81
Alignment explanation
Indices: 79371172--79371327 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
79371162 AAATTGTACA
* * * *
79371172 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
79371236 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
79371253 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
79371318 TGCGAGTTGA
65 TGCGAATTGA
79371328 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:79371295 original size:55 final size:52
Alignment explanation
Indices: 79371171--79371324 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
79371161 TAAATTGTAC
* *
79371171 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
79371224 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
79371279 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
79371325 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:79371329 original size:27 final size:27
Alignment explanation
Indices: 79371172--79371327 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
79371162 AAATTGTACA
*
79371172 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
79371199 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
79371226 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
79371253 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
79371281 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
79371308 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
79371328 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:79371338 original size:27 final size:27
Alignment explanation
Indices: 79371164--79371348 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
79371154 GCGGGATTAA
*
79371164 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
79371191 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
79371218 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
79371245 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
79371273 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
79371300 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
79371327 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
79371349 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:79371339 original size:82 final size:81
Alignment explanation
Indices: 79371164--79371348 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
79371154 GCGGGATTAA
* * * *
79371164 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
79371229 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
79371245 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
79371309 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
79371327 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
79371349 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:79377135 original size:40 final size:40
Alignment explanation
Indices: 79377018--79377197 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
79377008 ACCCAAGTTT
* * * * * *
79377018 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
* * * * * *
79377057 CTTCGGGTCTTAACCCGGGT-ATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGC
* *
79377097 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
*
79377137 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
79377177 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
79377198 TCATTCAAAT
Statistics
Matches: 120, Mismatches: 18, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 11 0.09
40 106 0.88
41 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGC
Found at i:79382228 original size:46 final size:46
Alignment explanation
Indices: 79382178--79382353 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
79382168 TGGTTGAGCA
79382178 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
79382224 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
79382271 TCCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
79382317 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79382354 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:79382334 original size:93 final size:93
Alignment explanation
Indices: 79382175--79382345 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
79382165 GGATGGTTGA
*
79382175 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
79382240 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
79382268 GCATCCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
79382333 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
79382346 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:79391936 original size:13 final size:15
Alignment explanation
Indices: 79391912--79391948 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
79391902 TATTATTATT
79391912 TTTTCATTTCT-CCA
1 TTTTCATTTCTCCCA
79391926 TTTTC-TTTCTCCCA
1 TTTTCATTTCTCCCA
79391940 TTTTTCATT
1 -TTTTCATT
79391949 CACTTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 5 0.25
14 8 0.40
15 5 0.25
16 2 0.10
ACGTcount: A:0.11, C:0.27, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTCATTTCTCCCA
Found at i:79392539 original size:13 final size:13
Alignment explanation
Indices: 79392523--79392550 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79392513 AAAGACAATT
79392523 TTCAAAAGTAATA
1 TTCAAAAGTAATA
79392536 TTCAAAAGTAATA
1 TTCAAAAGTAATA
79392549 TT
1 TT
79392551 AAACTAACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (13 bp):
TTCAAAAGTAATA
Found at i:79392957 original size:23 final size:22
Alignment explanation
Indices: 79392918--79392962 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
79392908 TACTTTGATA
79392918 TTAATTTTTTAAGTAATAATTT
1 TTAATTTTTTAAGTAATAATTT
**
79392940 TTAATTATTTTATTTAATAATTT
1 TTAATT-TTTTAAGTAATAATTT
79392963 CATATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
TTAATTTTTTAAGTAATAATTT
Found at i:79402465 original size:22 final size:22
Alignment explanation
Indices: 79402437--79402480 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
79402427 TGAAGTTAAG
*
79402437 AGATAGATATTCAATATCTATT
1 AGATAGATATTCAACATCTATT
79402459 AGATAGATATTCAACATCTATT
1 AGATAGATATTCAACATCTATT
79402481 CATACATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (22 bp):
AGATAGATATTCAACATCTATT
Found at i:79406700 original size:46 final size:47
Alignment explanation
Indices: 79406568--79406731 Score: 131
Period size: 46 Copynumber: 3.5 Consensus size: 47
79406558 TGATATGTGT
* * * * * *
79406568 GCTAGTGTAAGACATGT-TTGGACATGCATCGGCCAC-A-TTATGAGA
1 GCTAGTGTAAGACATATCTGGGACATGCATAGACCTCGAGATAT-AGA
* * * *
79406613 GCTAGTGTAAGATATATCTGGGACATGCATCGACTTTGAGATA-AGA
1 GCTAGTGTAAGACATATCTGGGACATGCATAGACCTCGAGATATAGA
* * *
79406659 GCTAATGTAAGACATGTCTGGGACATGCATTAG-CCTCGAGATATACAA
1 GCTAGTGTAAGACATATCTGGGACATGCA-TAGACCTCGAGATATA-GA
* *
79406707 GCTAGTGTAAGACCTATTTGGGACA
1 GCTAGTGTAAGACATATCTGGGACA
79406732 AGGTATCAGC
Statistics
Matches: 94, Mismatches: 19, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
45 15 0.16
46 51 0.54
47 4 0.04
48 24 0.26
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (47 bp):
GCTAGTGTAAGACATATCTGGGACATGCATAGACCTCGAGATATAGA
Found at i:79406809 original size:49 final size:49
Alignment explanation
Indices: 79406753--79406925 Score: 172
Period size: 49 Copynumber: 3.6 Consensus size: 49
79406743 TATAGTGTGT
* *
79406753 CAGTGTAAGACCTGTCTGGGACGTGGCATCGACACCGATAAATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAAATGAAAGC
* *** * *
79406802 CAGTGTAAGACCTGTTTGGGACATGGCATC-AGCTTTGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGA-CACCGATAAATGAAAGC
* *** * **
79406851 CAGTGTAAGACCTGTCTGGGACATGGCTTCGACTTTGAT--GTGTTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAAATGAAAGC
79406898 CAGTGTAAGACCATGTCTGGGACATGGC
1 CAGTGTAAGACC-TGTCTGGGACATGGC
79406926 GTCGGCATCT
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
47 16 0.15
48 16 0.15
49 74 0.69
50 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.26
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACCGATAAATGAAAGC
Found at i:79406821 original size:93 final size:97
Alignment explanation
Indices: 79406710--79406883 Score: 248
Period size: 98 Copynumber: 1.8 Consensus size: 97
79406700 TATACAAGCT
* * *
79406710 AGTGTAAGACCTATTTGGGACAAGGTATCAGC-TT-ATA-GTG-TGTCAGTGTAAGACCTGTCTG
1 AGTGTAAGACCTATTTGGGACAAGGCATCAGCTTTGATATATGAAGTCAGTGTAAGACCTGTCTG
*
79406771 GGACGTGGCATCGACACCGATAAATGAGAGCC
66 GGACATGGCATCGACACCGATAAATGAGAGCC
* *
79406803 AGTGTAAGACCTGTTTGGGACATGGCATCAGCTTTGATATATGAAAGTCAGTGTAAGACCTGTCT
1 AGTGTAAGACCTATTTGGGACAAGGCATCAGCTTTGATATATG-AAGTCAGTGTAAGACCTGTCT
*
79406868 GGGACATGGCTTCGAC
65 GGGACATGGCATCGAC
79406884 TTTGATGTGT
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
93 29 0.42
94 2 0.03
95 3 0.04
96 2 0.03
98 33 0.48
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (97 bp):
AGTGTAAGACCTATTTGGGACAAGGCATCAGCTTTGATATATGAAGTCAGTGTAAGACCTGTCTG
GGACATGGCATCGACACCGATAAATGAGAGCC
Found at i:79426324 original size:38 final size:38
Alignment explanation
Indices: 79426272--79426349 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
79426262 GCCACTAGAG
*
79426272 TTAGAAAAGGTTCATAATATGTTTCACGTATCAATGCT
1 TTAGAAAAGATTCATAATATGTTTCACGTATCAATGCT
*
79426310 TTAGAAAAGATTCATAATGTGTTTCACGTATCAATGCT
1 TTAGAAAAGATTCATAATATGTTTCACGTATCAATGCT
79426348 TT
1 TT
79426350 GACGATACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (38 bp):
TTAGAAAAGATTCATAATATGTTTCACGTATCAATGCT
Found at i:79432930 original size:42 final size:42
Alignment explanation
Indices: 79432870--79433023 Score: 184
Period size: 42 Copynumber: 3.6 Consensus size: 42
79432860 CAAGACTACG
79432870 TGTAAGACCATATCTGGGATATGGCATC-ATTATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGA-TATGAGATTTCA
* *
79432912 TGTAAGACCATATTTGGGATATGGCATCGATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * * * **
79432954 TGTAAGACTATAGCTGGGCTATTGACATCGATACGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
**
79432997 TGTAAGACCATGCCTGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
79433024 TGGTGTGGTG
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 60 0.64
43 34 0.36
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:79434786 original size:55 final size:54
Alignment explanation
Indices: 79434704--79434914 Score: 224
Period size: 53 Copynumber: 4.0 Consensus size: 54
79434694 AATTCCTAAG
* *
79434704 GTTTC-TAAGGCAAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAA
1 GTTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAA
* * * *
79434757 GTTTCTATAAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGA
1 GTTTC-ATAAGGC-AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAA
* * *
79434812 G-TTCATAAGGCAAGGATACCATGTAAAACCATGTCGAGACATGGCAATGGTAA
1 GTTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAA
* * *
79434865 GTTTC--AA---AAGGATACCACGTAAGACCATGACAA-ATCATGGCAATGGTAA
1 GTTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGA-CATGGCATTGGTAA
79434914 G
1 G
79434915 GTACCCGTGT
Statistics
Matches: 135, Mismatches: 17, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
48 1 0.01
49 37 0.27
52 6 0.04
53 43 0.32
54 6 0.04
55 38 0.28
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.23
Consensus pattern (54 bp):
GTTTCATAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAA
Found at i:79435128 original size:16 final size:16
Alignment explanation
Indices: 79435107--79435137 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79435097 ATAAATTTGA
79435107 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
79435123 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
79435138 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:79442469 original size:55 final size:54
Alignment explanation
Indices: 79442393--79442597 Score: 236
Period size: 55 Copynumber: 3.8 Consensus size: 54
79442383 ATTAAGGTCT
* *
79442393 AAGGATACCATGTAAGGCCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGC
* * *
79442448 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * * * *
79442503 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGTCATTGGTGAG-TTCACAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * *
79442556 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAA
79442598 TGTAACACCC
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.03
53 41 0.33
54 10 0.08
55 67 0.53
56 4 0.03
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:79442869 original size:20 final size:20
Alignment explanation
Indices: 79442855--79442896 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
79442845 CACACGCTCT
79442855 TGTGAATTGGGACACGCCCG
1 TGTGAATTGGGACACGCCCG
*
79442875 TGTGACTTGGGACACGCCCG
1 TGTGAATTGGGACACGCCCG
79442895 TG
1 TG
79442897 CAATCACCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (20 bp):
TGTGAATTGGGACACGCCCG
Found at i:79460985 original size:582 final size:581
Alignment explanation
Indices: 79459880--79461041 Score: 2137
Period size: 582 Copynumber: 2.0 Consensus size: 581
79459870 TGACCACACT
*
79459880 CCCTAACCAAATCCATGTTACAACCCTCTAAAGACCTTTTTGATTGATGTCTCATCTCAATTTAT
1 CCCTAACCAAAGCCATGTTACAACCCTCTAAAGACCTTTTTGATTGATGTCTCATCTCAATTTAT
* *
79459945 AGTGATGGAGATTTGATTTTCATGTAAGCTTATGGTAATAATTTTTCATATTGACTGATGAGTGC
66 AGTGATAGAGATTTGATTTTCATGCAAGCTTATGGTAATAATTTTTCATATTGACTGATGAGTGC
* *
79460010 TTCATTTATTGTCCTTAAACACCTCGAGTGATTTGAGTGAGTCTTTAGTGAGGATGTGAAACTCT
131 TTCATTTATTATCCTTAAACACCTCGAGTGATTTGAGTGAATCTTTAGTGAGGATGTGAAACTCT
*
79460075 GTGATAATTTGAATCAAAGGTAATTACTTAGATGAGGGGAGACACCTATATTTTCAGGATAAAAT
196 GTGATAATTTGAATCAAAGGTAATTACTTAAATGAGGGGAGACACCTATATTTTCAGGATAAAAT
*
79460140 GCTCAACTTGGAATGTTGAAACTTTGATGTTCTTTCAGTTGAATTCTCAATGTATGATTACTTAT
261 GCTCAACTTGGAATGTTGAAACTTTGATGTTCTTTCAGTTGAATTCTCAATATATGATTACTTAT
*
79460205 GGATTATTTTTAGATATTATCGATAGAAATTATAAGTTGAAAAGAATTTATTTTTATTATGAGTT
326 GGATTATTTTTAGATATTATCGATAGAAATTATAAGTTGAAAAGAATTTATTTTGATTATGAGTT
**
79460270 GAGAATTTTTCTTAAGGACAAGAAAATGCTTAAGTGTGGGGGTATTTGATAAACCGTAATTTATA
391 GAGAATTTTTCTTAAGGACAAGAAAATGCTTAAAAGTGGGGGTATTTGATAAACCGTAATTTATA
* *
79460335 CATATTTTTACCCCATGCTCAATACATTTTTTGGATGATTTTTCCTTAGAATTGGTGAATTTGAT
456 CATATTTTTACCCCATGCTCAACACATTTTTTGGATGATTTTTCCTTAGAATTGGTGAATTCGAT
* *
79460400 GCTCCTAATGCCTTAATTTCATATTTTATACTTAAGTGAGAATAGGAGAGCGAAAGGAACC
521 GCTCCTAATGCCTTAATTTCACATTTTATACTTAAGTGAGAATAGAAGAGCGAAAGGAACC
79460461 CCCTAACCAAAGCCATGTTACAACCCTCTAAAGACC-TTTTGATTGATGTCTCATCTCAATTTAT
1 CCCTAACCAAAGCCATGTTACAACCCTCTAAAGACCTTTTTGATTGATGTCTCATCTCAATTTAT
79460525 AGTGATAGAGATTTGATTTTTCATGCAAGCTTATGGTAATAATTTTTCATATTGACTGATGAGTG
66 AGTGATAGAGATTTGA-TTTTCATGCAAGCTTATGGTAATAATTTTTCATATTGACTGATGAGTG
79460590 CTTCATTTATTATCCTTAAACACCTCGAGTGATTTGAGTGAATCTTTAGTGAGGATGTGAAACTC
130 CTTCATTTATTATCCTTAAACACCTCGAGTGATTTGAGTGAATCTTTAGTGAGGATGTGAAACTC
*
79460655 TGTGATAATTTGAATCAAAGGTAATTACTTAAATGAGGGGAGACACCTATGTTTTCAGGATAAAA
195 TGTGATAATTTGAATCAAAGGTAATTACTTAAATGAGGGGAGACACCTATATTTTCAGGATAAAA
79460720 TGCTCAACTTGGAATGTTTGAAACTTTGATGTTCTTTCAGTTGAATTCTCAATATATGATTACTT
260 TGCTCAACTTGGAATG-TTGAAACTTTGATGTTCTTTCAGTTGAATTCTCAATATATGATTACTT
79460785 ATGGATTATTTTTAGATATTATCGATAGAAATTATAAGTTGAAAAGAATTTATTTTGATTATGAG
324 ATGGATTATTTTTAGATATTATCGATAGAAATTATAAGTTGAAAAGAATTTATTTTGATTATGAG
*
79460850 TTGAGAATTTTTCTTGAGGACAAGAAAATGCTTAAAAGTGGGGGTATTTGATAAACCGTAATTTA
389 TTGAGAATTTTTCTTAAGGACAAGAAAATGCTTAAAAGTGGGGGTATTTGATAAACCGTAATTTA
79460915 TACATATTTTTACCCCATGCTCAACACATTTTTTGGATGATTTTTCCTTAGAATTGGTGAATTCG
454 TACATATTTTTACCCCATGCTCAACACATTTTTTGGATGATTTTTCCTTAGAATTGGTGAATTCG
* *
79460980 ATGCTCCTAATGCCTTAATTTCACGTTTTATACTTAGGTGAGAATAGAAGAGCGAAAGGAAC
519 ATGCTCCTAATGCCTTAATTTCACATTTTATACTTAAGTGAGAATAGAAGAGCGAAAGGAAC
79461042 GAGAAATGGA
Statistics
Matches: 561, Mismatches: 18, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
580 43 0.08
581 224 0.40
582 294 0.52
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (581 bp):
CCCTAACCAAAGCCATGTTACAACCCTCTAAAGACCTTTTTGATTGATGTCTCATCTCAATTTAT
AGTGATAGAGATTTGATTTTCATGCAAGCTTATGGTAATAATTTTTCATATTGACTGATGAGTGC
TTCATTTATTATCCTTAAACACCTCGAGTGATTTGAGTGAATCTTTAGTGAGGATGTGAAACTCT
GTGATAATTTGAATCAAAGGTAATTACTTAAATGAGGGGAGACACCTATATTTTCAGGATAAAAT
GCTCAACTTGGAATGTTGAAACTTTGATGTTCTTTCAGTTGAATTCTCAATATATGATTACTTAT
GGATTATTTTTAGATATTATCGATAGAAATTATAAGTTGAAAAGAATTTATTTTGATTATGAGTT
GAGAATTTTTCTTAAGGACAAGAAAATGCTTAAAAGTGGGGGTATTTGATAAACCGTAATTTATA
CATATTTTTACCCCATGCTCAACACATTTTTTGGATGATTTTTCCTTAGAATTGGTGAATTCGAT
GCTCCTAATGCCTTAATTTCACATTTTATACTTAAGTGAGAATAGAAGAGCGAAAGGAACC
Found at i:79463738 original size:16 final size:16
Alignment explanation
Indices: 79463717--79463747 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79463707 ATAAATTTGA
79463717 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
79463733 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
79463748 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:79465933 original size:14 final size:14
Alignment explanation
Indices: 79465888--79465948 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
79465878 GGATATGGAA
*
79465888 TCATATATGCAAAT
1 TCATAAATGCAAAT
*
79465902 TCACAAATGCAGAA-
1 TCATAAATGCA-AAT
* *
79465916 TCATACATGCATAT
1 TCATAAATGCAAAT
* *
79465930 TCATAATTACAAAT
1 TCATAAATGCAAAT
79465944 TCATA
1 TCATA
79465949 TATGTGGATA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
13 1 0.03
14 33 0.92
15 2 0.06
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (14 bp):
TCATAAATGCAAAT
Found at i:79474578 original size:54 final size:50
Alignment explanation
Indices: 79474460--79474630 Score: 188
Period size: 48 Copynumber: 3.4 Consensus size: 50
79474450 GCTACGGCAT
*
79474460 TGTGATCCCATGTAAGACCATGCCTGGGACATGGCATTGG--TATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATATCGATA
* * * * *
79474508 TGTAATCCCATATAAGACAATTTTTGGGACATGGCATTGGCATCAGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT----ATCGATA
* *
79474562 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTAGCAT-T-GATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATATCGATA
* *
79474610 TGTGATCCAATTTAAGACCAT
1 TGTGATCCCATGTAAGACCAT
79474631 ATCTAGGATA
Statistics
Matches: 102, Mismatches: 15, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
48 57 0.56
49 1 0.01
50 1 0.01
54 43 0.42
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (50 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATATCGATA
Found at i:79483439 original size:18 final size:18
Alignment explanation
Indices: 79483412--79483448 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
79483402 ATTAACTTCA
* *
79483412 TTGACTGAATGTTAGACC
1 TTGACCGAATATTAGACC
79483430 TTGACCGAATATTAGACC
1 TTGACCGAATATTAGACC
79483448 T
1 T
79483449 ATATGTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (18 bp):
TTGACCGAATATTAGACC
Found at i:79484625 original size:12 final size:12
Alignment explanation
Indices: 79484608--79484638 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
79484598 TCCAACCATC
79484608 TATATATCTATA
1 TATATATCTATA
*
79484620 TATATATTTATA
1 TATATATCTATA
79484632 TATATAT
1 TATATAT
79484639 ATTCTTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (12 bp):
TATATATCTATA
Found at i:79492353 original size:26 final size:26
Alignment explanation
Indices: 79492324--79492375 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
79492314 TACGAGATGG
*
79492324 TACAGGTATGTACGTAAAGATTTTAA
1 TACAAGTATGTACGTAAAGATTTTAA
79492350 TACAAGTATGTACGTAAAGATTTTAA
1 TACAAGTATGTACGTAAAGATTTTAA
79492376 GTATTTACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (26 bp):
TACAAGTATGTACGTAAAGATTTTAA
Found at i:79503129 original size:47 final size:47
Alignment explanation
Indices: 79503078--79503679 Score: 1023
Period size: 47 Copynumber: 12.7 Consensus size: 47
79503068 TTAGGATTCT
* *
79503078 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
79503125 ATGTGATGAATGTGAAAGTGTATATA--TGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79503170 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79503217 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79503264 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC-AATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
79503312 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
79503361 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79503408 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
79503457 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79503504 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79503551 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
79503598 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
79503645 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
79503680 TCCCGAAGGG
Statistics
Matches: 535, Mismatches: 12, Indels: 16
0.95 0.02 0.03
Matches are distributed among these distances:
45 45 0.08
46 1 0.00
47 348 0.65
48 48 0.09
49 93 0.17
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:79503198 original size:25 final size:25
Alignment explanation
Indices: 79503170--79503248 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
79503160 CTAATGGCCG
79503170 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
79503195 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
79503217 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
79503242 ATGTGAT
1 ATGTGAT
79503249 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:79503854 original size:37 final size:37
Alignment explanation
Indices: 79503798--79503876 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
79503788 CCGAGCTCTA
* * *
79503798 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
79503835 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
79503872 AAGAC
1 AAGAC
79503877 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:79505376 original size:40 final size:40
Alignment explanation
Indices: 79505057--79505364 Score: 399
Period size: 40 Copynumber: 7.8 Consensus size: 40
79505047 GAGAATTGAG
79505057 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
79505097 AGTGATATATCC-GG---AGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
79505133 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
79505173 AGTGATGTATCCGGACTAAGTTCCGAATAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * ** *
79505213 AGAGATATATCCGGGCTAAATCTTGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
79505253 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * **
79505293 AGAGATATGTCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
79505333 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
79505365 ATCATGCTGG
Statistics
Matches: 225, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
36 34 0.15
37 2 0.01
39 2 0.01
40 187 0.83
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:79509272 original size:47 final size:47
Alignment explanation
Indices: 79509221--79509824 Score: 1016
Period size: 47 Copynumber: 12.7 Consensus size: 47
79509211 TTAGGATTCT
* *
79509221 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
79509268 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79509315 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79509362 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC-AATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
79509410 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC-AATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
79509458 ATGTGATGAATGTGAAAGTGTATATATATTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATAT-GTGATAAGGCCTAATGGCCG
79509506 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79509553 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
79509602 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
79509649 ATGTGATGAATGTGAAAGTGTATATATGTGATATGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
79509696 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
79509743 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
79509790 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
79509825 TCCCGAAGGG
Statistics
Matches: 536, Mismatches: 14, Indels: 14
0.95 0.02 0.02
Matches are distributed among these distances:
46 8 0.01
47 352 0.66
48 111 0.21
49 65 0.12
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:79509999 original size:37 final size:37
Alignment explanation
Indices: 79509943--79510022 Score: 106
Period size: 37 Copynumber: 2.2 Consensus size: 37
79509933 CCGAGCTCTA
* * * * *
79509943 AAGACCCGATGACTACGTGTGGGGATTTTGTCTGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
*
79509980 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
79510017 AAGACT
1 AAGACT
79510023 TCGTAATAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (37 bp):
AAGACTCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:79525468 original size:37 final size:37
Alignment explanation
Indices: 79525409--79525515 Score: 169
Period size: 37 Copynumber: 2.9 Consensus size: 37
79525399 AGCTCAGACG
* * *
79525409 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGAAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAA
*
79525446 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAA
*
79525483 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
79525516 TAATATATTT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAAA
Found at i:79525714 original size:46 final size:46
Alignment explanation
Indices: 79525661--79525751 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
79525651 TATATTTACA
* ** *
79525661 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCAGCCTTACCACATATC
* * *
79525707 CATCTCATACACGTTTCGCATTAGCCATTCAGCCTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTCAGCCTTACCACATAT
79525752 ATTCATGTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.32, G:0.08, T:0.33
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCAGCCTTACCACATATC
Found at i:79525789 original size:47 final size:47
Alignment explanation
Indices: 79525725--79526198 Score: 588
Period size: 47 Copynumber: 10.1 Consensus size: 47
79525715 ACACGTTTCG
* * * * **
79525725 CATTAGCCATTCAGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
79525772 CATTGGCCATTCGGCCTTATCTCATATATGCATG-------T--TCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
79525810 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
79525857 CATTGGCCATTCGGCCTTATCAGACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
79525904 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
**
79525957 CATTGGCCATTCAACCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
79526004 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
* *
79526055 CATTGGCCATTGGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
79526102 CATTGGCCATTCGGCCTTATCACACATACGTATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
79526149 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
79526196 CAT
1 CAT
79526199 AAAATCCTAA
Statistics
Matches: 373, Mismatches: 35, Indels: 38
0.84 0.08 0.09
Matches are distributed among these distances:
38 34 0.09
40 1 0.00
45 1 0.00
47 253 0.68
51 44 0.12
53 40 0.11
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:79525820 original size:38 final size:38
Alignment explanation
Indices: 79525769--79525898 Score: 143
Period size: 38 Copynumber: 3.2 Consensus size: 38
79525759 TTCACATTCA
* * *
79525769 TCACATTGGCCATTCGGCCTTATCTCATATATGCATGT
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATGT
79525807 TCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATT
1 TCACATTGGCCATTCGGCCTTATCACACATACGCATG-------T
*
79525852 CATCACATTGGCCATTCGGCCTTATCAGACATACGCATGT
1 --TCACATTGGCCATTCGGCCTTATCACACATACGCATGT
79525892 TCACATT
1 TCACATT
79525899 CATCACATTG
Statistics
Matches: 79, Mismatches: 4, Indels: 18
0.78 0.04 0.18
Matches are distributed among these distances:
38 41 0.52
40 1 0.01
45 1 0.01
47 36 0.46
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (38 bp):
TCACATTGGCCATTCGGCCTTATCACACATACGCATGT
Found at i:79525906 original size:23 final size:23
Alignment explanation
Indices: 79525832--79525906 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
79525822 GGCCTTATCA
79525832 CACATACGCATGTTCACATTCAT
1 CACATACGCATGTTCACATTCAT
** * *
79525855 CACATTGGCCA--TTCGGCCTT-AT
1 CACATACG-CATGTTC-ACATTCAT
79525877 CAGACATACGCATGTTCACATTCAT
1 C--ACATACGCATGTTCACATTCAT
79525902 CACAT
1 CACAT
79525907 TGGCCATTCG
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 6 0.16
23 15 0.41
24 10 0.27
25 6 0.16
ACGTcount: A:0.28, C:0.31, G:0.12, T:0.29
Consensus pattern (23 bp):
CACATACGCATGTTCACATTCAT
Found at i:79525975 original size:100 final size:97
Alignment explanation
Indices: 79525807--79526198 Score: 598
Period size: 98 Copynumber: 4.1 Consensus size: 97
79525797 ATATGCATGT
***
79525807 TCACATTGGCCATTCGGCCTTATCACACATACGCAT---GTTCACATTCATCACATTGGCCATTC
1 TCACATTGGCCATTCGGCCTTATCACACATATATATACGGTTCACATTCATCACATTGGCCATTC
* *
79525869 GGCCTTATCAGACATACGCATGTTCACATTCA
66 GGCCTTATCACACATACGCATGTTCACATCCA
*
79525901 TCACATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCACATTGGCCA
1 TCACATTGGCCATTCGGCCTTATCA--CACATATATATAC-GGTTCACATTCATCACATTGGCCA
** *
79525966 TTCAACCTTATCACACATACGCATGTTCACATTCA
63 TTCGGCCTTATCACACATACGCATGTTCACATCCA
79526001 TCACATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCACATTGGCCATT
1 TCACATTGGCCATTCGGCCTTATCACACATATATATAC-GGTTCACATTCATCACATTGGCCATT
*
79526066 GGGCCTTATCACACATACGCATGTTCACATCCA
65 CGGCCTTATCACACATACGCATGTTCACATCCA
**
79526099 TCACATTGGCCATTCGGCCTTATCACACATACGTAT---GTTCACATTCATCACATTGGCCATTC
1 TCACATTGGCCATTCGGCCTTATCACACATATATATACGGTTCACATTCATCACATTGGCCATTC
79526161 GGCCTTATCACACATACGCATGTTCACATCCA
66 GGCCTTATCACACATACGCATGTTCACATCCA
79526193 TCACAT
1 TCACAT
79526199 AAAATCCTAA
Statistics
Matches: 276, Mismatches: 16, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
94 88 0.32
96 7 0.03
98 101 0.37
100 80 0.29
ACGTcount: A:0.27, C:0.30, G:0.13, T:0.30
Consensus pattern (97 bp):
TCACATTGGCCATTCGGCCTTATCACACATATATATACGGTTCACATTCATCACATTGGCCATTC
GGCCTTATCACACATACGCATGTTCACATCCA
Found at i:79530122 original size:40 final size:40
Alignment explanation
Indices: 79530090--79530361 Score: 454
Period size: 40 Copynumber: 6.8 Consensus size: 40
79530080 CCAGCATGAT
* * * * *
79530090 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGTACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
79530130 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
79530170 TGCTCCTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
79530210 TGCTCCTCGGGACTTAGCCCGGATATATCATTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
79530250 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
79530290 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAA
1 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
79530330 TGCTCTTCGGGACTTAGCCCAGATATATCACT
1 TGCTCCTCGGGACTTAGCCCGGATATATCACT
79530362 CTCAATTCTC
Statistics
Matches: 220, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 220 1.00
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:79531673 original size:37 final size:37
Alignment explanation
Indices: 79531614--79531720 Score: 178
Period size: 37 Copynumber: 2.9 Consensus size: 37
79531604 AGCTCAGACG
* * *
79531614 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79531651 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79531688 TAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
79531721 CAATATATTT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79531932 original size:46 final size:46
Alignment explanation
Indices: 79531864--79531993 Score: 149
Period size: 46 Copynumber: 2.8 Consensus size: 46
79531854 TATATATACA
*
79531864 CATCTCATACATATCTCACATTAGCCATTCGGCCTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* * *
79531910 CATCTCATACACGTTTCGCATTAGCCATTCGGCCTTACCACATAT-
1 CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
* *
79531955 -AT-TCATGTTCACATTCATCACATTGGCCATTCGGCCTTA
1 CATCTCA--TACACA-TC-TCACATTAGCCATTCGGCCTTA
79531994 TCTTATATAT
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
43 3 0.04
44 2 0.03
45 4 0.06
46 42 0.59
47 20 0.28
ACGTcount: A:0.25, C:0.32, G:0.10, T:0.32
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATC
Found at i:79532002 original size:47 final size:47
Alignment explanation
Indices: 79531928--79532410 Score: 687
Period size: 47 Copynumber: 10.1 Consensus size: 47
79531918 ACACGTTTCG
* * * **
79531928 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
** * *
79531975 CATTGGCCATTCGGCCTTATCTTATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
79532022 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
79532069 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
79532116 CATTGGCCATTCGGCCTTATCACGCATATATATATACAAGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
*
79532169 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
79532216 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCAT----GTTCACATTCATCA
*
79532267 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
79532314 CATTGGCCATTCGGCCATATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
*
79532361 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
79532408 CAT
1 CAT
79532411 AAAATCCTAA
Statistics
Matches: 394, Mismatches: 32, Indels: 20
0.88 0.07 0.04
Matches are distributed among these distances:
47 307 0.78
49 1 0.00
51 45 0.11
53 41 0.10
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:79532298 original size:245 final size:241
Alignment explanation
Indices: 79531928--79532388 Score: 760
Period size: 245 Copynumber: 1.9 Consensus size: 241
79531918 ACACGTTTCG
* * **
79531928 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGACCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
79531993 ATCTTATATATGCATGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATACGCATGTT
66 ATCATATATATACAGGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATACGCATGTT
* *
79532058 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGC
131 CACATCCATCACATTGGCCATTCGGCCATATCACACATACGCATGTTCACATTCATCACATTGGC
*
79532123 CATTCGGCCTTATCACGCATATATATATACAAGTTCACATTCATCA
196 CATTCGGCCTTATCACACATATATATATACAAGTTCACATTCATCA
* *
79532169 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGACCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
79532234 ATCACACATATATATACGGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCA
66 AT----CATATATATACAGGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATACGCA
79532299 TGTTCACATCCATCACATTGGCCATTCGGCCATATCACACATACGCATGTTCACATTCATCACAT
127 TGTTCACATCCATCACATTGGCCATTCGGCCATATCACACATACGCATGTTCACATTCATCACAT
79532364 TGGCCATTCGGCCTTATCACACATA
192 TGGCCATTCGGCCTTATCACACATA
79532389 CGCATGTTCA
Statistics
Matches: 202, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
241 61 0.30
245 141 0.70
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (241 bp):
CATTAGCCATTCGACCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCATATATATACAGGTTCACATTCATCACATTGGCCATTCGACCTTATCACACATACGCATGTT
CACATCCATCACATTGGCCATTCGGCCATATCACACATACGCATGTTCACATTCATCACATTGGC
CATTCGGCCTTATCACACATATATATATACAAGTTCACATTCATCA
Found at i:79537702 original size:31 final size:31
Alignment explanation
Indices: 79537664--79537734 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
79537654 GTCGAGACAC
*
79537664 GGGCGTGTGTGACCACACAGCCTGCCCACAG
1 GGGCGTGTGTGACCACACAGCCTACCCACAG
* ** *
79537695 GGGCGTGTGTGACTACATGGCCTACCCACAT
1 GGGCGTGTGTGACCACACAGCCTACCCACAG
*
79537726 GTGCGTGTG
1 GGGCGTGTG
79537735 ACCCCTGTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.20
Consensus pattern (31 bp):
GGGCGTGTGTGACCACACAGCCTACCCACAG
Found at i:79539027 original size:33 final size:33
Alignment explanation
Indices: 79538990--79539131 Score: 88
Period size: 33 Copynumber: 4.2 Consensus size: 33
79538980 GGTCCAACCC
*
79538990 TGGTCTTACGTTCATAGTGCCATAACCCAATTA
1 TGGTCTTACGTTCATAGTGCCATAACCCAACTA
* * * * *
79539023 TGGTCTTATC-ATCAGAATGCCATAGCCCAGCTA
1 TGGTCTTA-CGTTCATAGTGCCATAACCCAACTA
* * * * * * * *** *
79539056 TGGCCTTACATATAAACACTACTATGGTCCAACCA
1 TGGTCTTACGT-T-CATAGTGCCATAACCCAACTA
*
79539091 TGGTCTTACGTTCATAGTGCCATAACCCAATTA
1 TGGTCTTACGTTCATAGTGCCATAACCCAACTA
79539124 TGGTCTTA
1 TGGTCTTA
79539132 TCTGTCAATT
Statistics
Matches: 76, Mismatches: 29, Indels: 8
0.67 0.26 0.07
Matches are distributed among these distances:
32 1 0.01
33 51 0.67
34 3 0.04
35 21 0.28
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (33 bp):
TGGTCTTACGTTCATAGTGCCATAACCCAACTA
Found at i:79539083 original size:101 final size:101
Alignment explanation
Indices: 79538894--79539133 Score: 390
Period size: 101 Copynumber: 2.4 Consensus size: 101
79538884 AATTCATCCT
* * * ** * *
79538894 TTACATTCCTAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGTTATAGGCCAGCTATGGT
1 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGC
* *
79538959 CTTACATATAAACACTGCCATGGTCCAACCCTGGTC
66 CTTACATATAAACACTACCATGGTCCAACCATGGTC
79538995 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGC
1 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGC
*
79539060 CTTACATATAAACACTACTATGGTCCAACCATGGTC
66 CTTACATATAAACACTACCATGGTCCAACCATGGTC
79539096 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATC
1 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATC
79539134 TGTCAATTCA
Statistics
Matches: 129, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 129 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (101 bp):
TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGC
CTTACATATAAACACTACCATGGTCCAACCATGGTC
Found at i:79548043 original size:40 final size:41
Alignment explanation
Indices: 79547942--79548126 Score: 252
Period size: 40 Copynumber: 4.6 Consensus size: 41
79547932 TACTCGAATG
*
79547942 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
*
79547983 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGC-ACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
79548023 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
79548063 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
79548103 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
79548127 CTTGTGCGAG
Statistics
Matches: 131, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 4 0.03
40 89 0.68
41 38 0.29
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:79552998 original size:40 final size:41
Alignment explanation
Indices: 79552856--79553040 Score: 234
Period size: 41 Copynumber: 4.6 Consensus size: 41
79552846 TACTCGAATG
*
79552856 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
79552897 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* *
79552938 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGCGACT
* * *
79552978 ATATCCGGGCTAAGTCCCGAAGGTATTTATGCT-AGTGAC-
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
* * *
79553017 CTATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
79553041 CTTGTGCGAG
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
39 21 0.16
40 38 0.30
41 68 0.53
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGCGACT
Found at i:79553011 original size:81 final size:82
Alignment explanation
Indices: 79552858--79553011 Score: 242
Period size: 81 Copynumber: 1.9 Consensus size: 82
79552848 CTCGAATGAT
* *
79552858 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
*
79552923 TTGTGCTAAGCAACTAC
66 TTATGCTAAGCAACTAC
79552940 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGG-T
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCT
79553002 ATTTATGCTA
65 -TTTATGCTA
79553012 GTGACCTATC
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
80 1 0.01
81 38 0.57
82 27 0.40
83 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (82 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCCGAAGGCTT
TTATGCTAAGCAACTAC
Found at i:79557880 original size:40 final size:39
Alignment explanation
Indices: 79557771--79557957 Score: 213
Period size: 40 Copynumber: 4.8 Consensus size: 39
79557761 TACTCGAATG
*
79557771 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGGACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCACT
79557810 ATATCC-GGCTAAGT-CCGAAGGCTTTGTGCTAAGCACT
1 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCACT
* *
79557847 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGC-ACT
* * *
79557887 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-CACT
* * *
79557927 ATATCCGGGTTAAGACCCGAAGGCCTTGTGC
1 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGC
79557958 GAGTGGTTAT
Statistics
Matches: 130, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
37 27 0.21
38 14 0.11
39 24 0.18
40 65 0.50
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCACT
Found at i:79565872 original size:40 final size:39
Alignment explanation
Indices: 79565801--79565985 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 39
79565791 TACTCGAATG
*
79565801 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCT-AGCGACT
*
79565842 ATATCCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCGAAGGCATTTGTGCT-AGCGACT
* *
79565882 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGCGACT
* * *
79565922 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGCGACT
* *
79565962 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
79565986 CTTGTGCGAG
Statistics
Matches: 131, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 98 0.75
41 32 0.24
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACT
Found at i:79565942 original size:81 final size:81
Alignment explanation
Indices: 79565803--79565955 Score: 238
Period size: 81 Copynumber: 1.9 Consensus size: 81
79565793 CTCGAATGAT
* * *
79565803 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTATATCCGGGCTAAGTCCGAAGGCTTT
1 ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCGAAGGCATT
*
79565868 TGTGCTAAGCGACTAC
66 TATGCTAAGCGACTAC
79565884 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCT-AGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATCCGGACTAAG-TCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGT-CCGAAGGCA
79565947 TTTATGCTA
64 TTTATGCTA
79565956 GTGACCATAT
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
80 22 0.33
81 43 0.65
82 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.25
Consensus pattern (81 bp):
ATCCGGACTAAGTCCCGAAGGCATTTGTGCTAAGCGACTATATCCGGGCTAAGTCCGAAGGCATT
TATGCTAAGCGACTAC
Found at i:79570329 original size:19 final size:18
Alignment explanation
Indices: 79570307--79570345 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
79570297 ATTTAAAAAG
*
79570307 AAATTGAAATTACAAAATA
1 AAATTGAAATGA-AAAATA
*
79570326 AAATTGACATGAAAAATA
1 AAATTGAAATGAAAAATA
79570344 AA
1 AA
79570346 GTTTTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.64, C:0.05, G:0.08, T:0.23
Consensus pattern (18 bp):
AAATTGAAATGAAAAATA
Found at i:79570780 original size:20 final size:20
Alignment explanation
Indices: 79570755--79570817 Score: 72
Period size: 20 Copynumber: 3.1 Consensus size: 20
79570745 ATCATTATCA
*
79570755 CCGATAACTGTCGTTCACTG
1 CCGATAACTGTCATTCACTG
*
79570775 CCGATAACTATCATTCACTG
1 CCGATAACTGTCATTCACTG
* * * *
79570795 TCAATCACTGTCAATCACTG
1 CCGATAACTGTCATTCACTG
79570815 CCG
1 CCG
79570818 TTCATTGTCG
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.25, C:0.32, G:0.14, T:0.29
Consensus pattern (20 bp):
CCGATAACTGTCATTCACTG
Found at i:79570804 original size:10 final size:10
Alignment explanation
Indices: 79570789--79570814 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
79570779 TAACTATCAT
79570789 TCACTGTCAA
1 TCACTGTCAA
79570799 TCACTGTCAA
1 TCACTGTCAA
79570809 TCACTG
1 TCACTG
79570815 CCGTTCATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (10 bp):
TCACTGTCAA
Found at i:79573595 original size:48 final size:48
Alignment explanation
Indices: 79573478--79573617 Score: 154
Period size: 48 Copynumber: 2.9 Consensus size: 48
79573468 CTAGGTTATC
* * *
79573478 GGCATCGATATGTGATCCTATGTAAAACCATATCTGGGACATGGCATT
1 GGCACCGATATGTGATCCCATGTAAGACCATATCTGGGACATGGCATT
* ** ** * * *
79573526 GGCAGCGACCTACGATGCCATGTAAGACCATGTTTGGGACATGGCATT
1 GGCACCGATATGTGATCCCATGTAAGACCATATCTGGGACATGGCATT
* * *
79573574 GGCACCGATATGTGATCCCATGTAAGAGCATATCCGGGATATGG
1 GGCACCGATATGTGATCCCATGTAAGACCATATCTGGGACATGG
79573618 TATGGGCATC
Statistics
Matches: 71, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
48 71 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (48 bp):
GGCACCGATATGTGATCCCATGTAAGACCATATCTGGGACATGGCATT
Found at i:79582700 original size:45 final size:45
Alignment explanation
Indices: 79582473--79582701 Score: 169
Period size: 47 Copynumber: 5.0 Consensus size: 45
79582463 CCTTATAGAA
* * *
79582473 CTTATCAATGCCATG-CATTGGCATGGTCTTAC-TGGTATCCTTGT
1 CTTACCAATGCCATGTC-TTGACATGGTCTTACATGGTATCCTTGC
*** * *
79582517 CTTACCAAATGCCATGTTCCAAACATCGTCTTACATGGTATCCTTGT
1 CTTACC-AATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGC
** ** *
79582564 CTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGG-AGTCCTTAATC
1 CTTA---CCAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTT--GC
** * * *
79582614 AATGCCGATGCCATGTCTTGACATGGTCTTACACGAG-ATCCTTGC
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATG-GTATCCTTGC
*
79582659 CTTACCAATGTCATGTCTTGACATGGTCTTACATGGTATCCTT
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
79582702 AACCGTCAAT
Statistics
Matches: 141, Mismatches: 32, Indels: 23
0.72 0.16 0.12
Matches are distributed among these distances:
44 6 0.04
45 45 0.32
46 10 0.07
47 48 0.34
48 22 0.16
49 7 0.05
50 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (45 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC
Found at i:79583365 original size:31 final size:30
Alignment explanation
Indices: 79583324--79583387 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
79583314 CATTCCCTAA
**
79583324 CTAAAACTTTGGCAAAATTATTATTTTGCCC
1 CTAAAACTTT-GCAAAATTACGATTTTGCCC
* * *
79583355 CTAAACCTTTGTAGAATTACGATTTTGCCC
1 CTAAAACTTTGCAAAATTACGATTTTGCCC
79583385 CTA
1 CTA
79583388 GGCTCGGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.38
Consensus pattern (30 bp):
CTAAAACTTTGCAAAATTACGATTTTGCCC
Found at i:79589126 original size:92 final size:91
Alignment explanation
Indices: 79588955--79589126 Score: 272
Period size: 91 Copynumber: 1.9 Consensus size: 91
79588945 AACTTACCAT
* * *
79588955 TGCCATGTCTTGACATGGTCTTATATGGTATCCTTGCCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTA
79589020 GCATGGTCTTACATGGGACCTTTCAA
66 GCATGGTCTTACATGGGACCTTTCAA
* * * *
79589046 TGCCATGTCTTGACATGGTCTTCCATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTT
79589111 AGCATGGTCTTACATG
65 AGCATGGTCTTACATG
79589127 ATATCCTTAT
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
91 38 0.52
92 35 0.48
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (91 bp):
TGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTATGAACTCACCAATGCCATGCCTTA
GCATGGTCTTACATGGGACCTTTCAA
Found at i:79591352 original size:48 final size:48
Alignment explanation
Indices: 79591198--79591424 Score: 205
Period size: 48 Copynumber: 4.8 Consensus size: 48
79591188 TAGGGTTATG
** *
79591198 TACGATCCCATGTAAGACCATGTCTGGGACATGGTTTTGGCATCGATA
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACA
** ** * * * * *
79591246 TATAATTTCGTGTAAGACCATAG-CTGGG-C-T---ATCGACATCAATA
1 TACGATCCCATGTAAGACCAT-GTCTGGGACATGGCATTGGCATCGACA
** * *
79591289 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGACC
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACA
*
79591337 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACA
** * * *
79591385 TGTGATCCCATGTAAGACCATATCCGGGATATGGCATTGG
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
79591425 TATCCTACCA
Statistics
Matches: 142, Mismatches: 30, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
42 1 0.01
43 30 0.21
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 106 0.75
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (48 bp):
TACGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACA
Found at i:79591356 original size:91 final size:94
Alignment explanation
Indices: 79591201--79591424 Score: 249
Period size: 91 Copynumber: 2.4 Consensus size: 94
79591191 GGTTATGTAC
** * * ** *
79591201 GATCCCATGTAAGACCATGTCTGGGACATGGTTTTGGCATCGATATATAATTTCGTGTAAGACCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATACAATCCCATGTAAGACCA
79591266 TAG-CTGGG-C-T-ATCGACATCAATATGT
66 T-GTCTGGGACATGATCGACATCAATATGT
* * *
79591292 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGACCTACGATCCCATGTAAGACCA
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATACAATCCCATGTAAGACCA
* * *
79591357 TGTCTGGGACATGGCATTGGCATCGATATGT
66 TGTCTGGGACAT-G-ATCGACATCAATATGT
* * *
79591388 GATCCCATGTAAGACCATATCCGGGATATGGCATTGG
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGG
79591425 TATCCTACCA
Statistics
Matches: 111, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
90 1 0.01
91 61 0.55
92 1 0.01
93 1 0.01
96 47 0.42
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (94 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATACAATCCCATGTAAGACCA
TGTCTGGGACATGATCGACATCAATATGT
Found at i:79593455 original size:16 final size:17
Alignment explanation
Indices: 79593434--79593471 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
79593424 AAATGACTTC
*
79593434 AAAATATTTAA-TAAAA
1 AAAATATATAATTAAAA
*
79593450 AAAATATATAATTCAAA
1 AAAATATATAATTAAAA
79593467 AAAAT
1 AAAAT
79593472 TAATAATACG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAATATATAATTAAAA
Found at i:79593653 original size:88 final size:89
Alignment explanation
Indices: 79593441--79593784 Score: 347
Period size: 89 Copynumber: 3.9 Consensus size: 89
79593431 TTCAAAATAT
* * * * *
79593441 TTAATA-AAAAAAATATATAATTCAAA-AAAATTAATAATACGCAAC-AAATTAAATTTACAAAT
1 TTAATACAAGAAAATATAAAATTCAAACAACA--AATAATACG-GACTAAATTAAATTTACAGAT
*** * * * *
79593503 ACATGGAAATAAAAACATTTTAGAATA
63 ACAAAAAAATACAAACATTCTAAAAAA
* ** * * *
79593530 TTAATACATGAAAATATAAAATTCAAGTAACAAATAATATGGAGTAAATTAAATTTACAGA-CCT
1 TTAATACAAGAAAATATAAAATTCAAACAACAAATAATACGGACTAAATTAAATTTACAGATAC-
*
79593594 AAAAAAATACAAGCATTCT-AAAAA
65 AAAAAAATACAAACATTCTAAAAAA
* *
79593618 TTAATACAAGAAAATAAAAAATTCAAACAAGAAATAATACGGACTAAATTAAATTTACAGATACA
1 TTAATACAAGAAAATATAAAATTCAAACAACAAATAATACGGACTAAATTAAATTTACAGATACA
79593683 AAAAAATACAAACATTCTAAAAAA
66 AAAAAATACAAACATTCTAAAAAA
** * * * * **
79593707 TTAATACACTAAAATATAAACTTCGAACAATAAATAATACAGACTAAATTTGATTTACAGATACA
1 TTAATACAAGAAAATATAAAATTCAAACAACAAATAATACGGACTAAATTAAATTTACAGATACA
79593772 AAAATAATACAAA
66 AAAA-AATACAAA
79593785 AATTTTGAAT
Statistics
Matches: 212, Mismatches: 36, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
88 77 0.36
89 108 0.51
90 24 0.11
91 3 0.01
ACGTcount: A:0.58, C:0.10, G:0.06, T:0.26
Consensus pattern (89 bp):
TTAATACAAGAAAATATAAAATTCAAACAACAAATAATACGGACTAAATTAAATTTACAGATACA
AAAAAATACAAACATTCTAAAAAA
Found at i:79594123 original size:28 final size:28
Alignment explanation
Indices: 79594049--79594131 Score: 73
Period size: 27 Copynumber: 3.0 Consensus size: 28
79594039 AATTCGGTTG
*
79594049 TACACTACAAAACACTCTCATTTGCA--A
1 TACATTACAAAACACTCTCATTTG-ATGA
* * **
79594076 T-CCTCTACAAAAAAAACTCATTTGATGA
1 TACAT-TACAAAACACTCTCATTTGATGA
79594104 TACATTACAAAACACTCTCATTTTGATG
1 TACATTACAAAACACTCTCA-TTTGATG
79594132 GCTCTCTCAA
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
26 2 0.05
27 17 0.40
28 14 0.33
29 9 0.21
ACGTcount: A:0.40, C:0.24, G:0.06, T:0.30
Consensus pattern (28 bp):
TACATTACAAAACACTCTCATTTGATGA
Found at i:79596679 original size:19 final size:19
Alignment explanation
Indices: 79596636--79596686 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
79596626 AATTATAAAA
* *
79596636 AATAAAAAAACTAAATTTT
1 AATAAAAATATTAAATTTT
*
79596655 -AGAAAAATATTAAATTTT
1 AATAAAAATATTAAATTTT
79596673 AATAAAAAT-TTAAA
1 AATAAAAATATTAAA
79596687 AAATTAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 20 0.74
19 7 0.26
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
AATAAAAATATTAAATTTT
Found at i:79596743 original size:37 final size:36
Alignment explanation
Indices: 79596701--79596773 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
79596691 TAAAATTTAT
* *
79596701 TAAAAACTAGAAATTTTTTATAAAAAT-ACTAAAAAA
1 TAAAAAATAGAAAATTTTTATAAAAATCA-TAAAAAA
*
79596737 TAAAAAATTGAAAATTTTTATAAAAATCATAAAAAA
1 TAAAAAATAGAAAATTTTTATAAAAATCATAAAAAA
79596773 T
1 T
79596774 TAACGACCCC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 32 0.97
37 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.32
Consensus pattern (36 bp):
TAAAAAATAGAAAATTTTTATAAAAATCATAAAAAA
Found at i:79600324 original size:46 final size:47
Alignment explanation
Indices: 79600218--79600333 Score: 144
Period size: 50 Copynumber: 2.4 Consensus size: 47
79600208 ATGTTTCGAC
** * *
79600218 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATCTAAT
* *
79600268 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
79600314 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
79600334 TATGTCCTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 29 0.49
50 30 0.51
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATCTAAT
Found at i:79606625 original size:18 final size:18
Alignment explanation
Indices: 79606595--79606636 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
79606585 ATAGATTATG
*
79606595 ATTTTTAATGTTTTAATA
1 ATTTTTAATGTTTTAAGA
79606613 ATTTTCTAA-GTTTTAAGA
1 ATTTT-TAATGTTTTAAGA
79606631 ATTTTT
1 ATTTTT
79606637 TTTGAGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 18 0.82
19 3 0.14
ACGTcount: A:0.31, C:0.02, G:0.07, T:0.60
Consensus pattern (18 bp):
ATTTTTAATGTTTTAAGA
Found at i:79607308 original size:16 final size:18
Alignment explanation
Indices: 79607277--79607309 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
79607267 ACCAAACTAG
79607277 TGAATAATTATTAGTTGT
1 TGAATAATTATTAGTTGT
79607295 TGAA-AATT-TTAGTTG
1 TGAATAATTATTAGTTG
79607310 GGATCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (18 bp):
TGAATAATTATTAGTTGT
Found at i:79607734 original size:56 final size:55
Alignment explanation
Indices: 79607634--79607741 Score: 164
Period size: 56 Copynumber: 1.9 Consensus size: 55
79607624 GTATCCATTG
79607634 GATGATAAATCATAACTTTTAATTTGAATAATGCTTATGAATAATTAAATTTGTAA
1 GATGATAAATCATAACTTTTAATTTGAATAATGCTTATGAATAATT-AATTTGTAA
* * *
79607690 GATGATAAATCATCACTTTTAATTTGAATAGTG-TTCATGGATAATTAATTTG
1 GATGATAAATCATAACTTTTAATTTGAATAATGCTT-ATGAATAATTAATTTG
79607742 CAATATATAA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
55 8 0.17
56 40 0.83
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (55 bp):
GATGATAAATCATAACTTTTAATTTGAATAATGCTTATGAATAATTAATTTGTAA
Found at i:79613734 original size:15 final size:14
Alignment explanation
Indices: 79613712--79613743 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
79613702 CGGATAAAAT
79613712 TTTAATTTTTATAA
1 TTTAATTTTTATAA
79613726 TTTATATTTTTATAA
1 TTTA-ATTTTTATAA
79613741 TTT
1 TTT
79613744 GTAAATGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTAATTTTTATAA
Found at i:79614450 original size:6 final size:6
Alignment explanation
Indices: 79614441--79614468 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
79614431 ATTAGAGGTG
79614441 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTT
79614469 CCAATTGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Done.