Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Gbar_A06 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 115140250 ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32 Warning! 2234201 characters in sequence are not A, C, G, or T File 235 of 345 Found at i:79844854 original size:65 final size:65 Alignment explanation
Indices: 79844773--79844899 Score: 191 Period size: 65 Copynumber: 2.0 Consensus size: 65 79844763 TTGAAGATAA * 79844773 CAGATCTGACATTCGTGAGTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCTATAG 1 CAGATCTGACATTCGTGAGTTTACATCAAAGAAGATCGAAGACGACAAACTTGGCGTCTCTATAG * * * * * * 79844838 CAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCTA 1 CAGATCTGACATTCGTGAGTTTACATCAAAGAAGATCGAAGACGACAAACTTGGCGTCTCTA 79844900 AATTAGACGG Statistics Matches: 55, Mismatches: 7, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 65 55 1.00 ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28 Consensus pattern (65 bp): CAGATCTGACATTCGTGAGTTTACATCAAAGAAGATCGAAGACGACAAACTTGGCGTCTCTATAG Found at i:79844964 original size:155 final size:155 Alignment explanation
Indices: 79844679--79844988 Score: 476 Period size: 155 Copynumber: 2.0 Consensus size: 155 79844669 CAGATCGAAG * * 79844679 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGATAGATTTGGCGTCTCT 1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT ** * * 79844744 GTATTAGACGAGGAGCAGATTGAAGATAACAGATCTGACATTCGTGAGTTTACATCAAAGAAGAT 66 AAATTAGACGAGGAGCAGATCGAAGATAACAGATCTAACATTCGTGAGTTTACATCAAAGAAGAT 79844809 CGAAGACGACAGACTTGGCGTCTCT 131 CGAAGACGACAGACTTGGCGTCTCT * 79844834 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT 1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT * * * * * * 79844899 AAATTAGACGGGGAGCAGATCGAAGATAGCAGATCTAACATTTGTGTGTTTACATCGAAGTAGAT 66 AAATTAGACGAGGAGCAGATCGAAGATAACAGATCTAACATTCGTGAGTTTACATCAAAGAAGAT * * * 79844964 CGAAGATGATAGATTTGGCGTCTCT 131 CGAAGACGACAGACTTGGCGTCTCT 79844989 GAATTAGACG Statistics Matches: 139, Mismatches: 16, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 155 139 1.00 ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28 Consensus pattern (155 bp): ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT AAATTAGACGAGGAGCAGATCGAAGATAACAGATCTAACATTCGTGAGTTTACATCAAAGAAGAT CGAAGACGACAGACTTGGCGTCTCT Found at i:79844987 original size:90 final size:90 Alignment explanation
Indices: 79844834--79845142 Score: 510 Period size: 90 Copynumber: 3.4 Consensus size: 90 79844824 TGGCGTCTCT * * 79844834 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT 1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT 79844899 AAATTAGACGGGGAGCAGATCGAAG 66 AAATTAGACGGGGAGCAGATCGAAG * * * * 79844924 ATAGCAGATCTAACATTTGTGTGTTTACATCGAAGTAGATCGAAGATGATAGATTTGGCGTCTCT 1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT * * 79844989 GAATTAGACGAGGAGCAGATCGAAG 66 AAATTAGACGGGGAGCAGATCGAAG * 79845014 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT 1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT * * 79845079 ATATTAGACGGGGAGCAGATCAAAG 66 AAATTAGACGGGGAGCAGATCGAAG * 79845104 ATAGCAGATCTGACATTCGTGTGTTTACATCAAAGCAGA 1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGA 79845143 CAGATTTGGC Statistics Matches: 200, Mismatches: 19, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 90 200 1.00 ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27 Consensus pattern (90 bp): ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT AAATTAGACGGGGAGCAGATCGAAG Found at i:79845024 original size:245 final size:244 Alignment explanation
Indices: 79844590--79845081 Score: 806 Period size: 245 Copynumber: 2.0 Consensus size: 244 79844580 CAGATCGAAG * * 79844590 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAGATTTGGCGTCTCTG 1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAAATTTGGCGTCTCTA * * * * 79844655 TATTATATGGAGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATC 66 AATTAGACGGAGAGCAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATC * * 79844720 GAAGATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATTGAAGATAACAGATCTGACAT 131 GAAGATGATAGATTTGGCGTCTCTGAATTAGACGAGGAGCAGATCGAAGATAACAGATCTGACAT 79844785 TCGTGA-GTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCT 196 TCGT-ATGTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCT * 79844834 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT 1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAG-AGATCGAAGATGACAAATTTGGCGTCTCT * * * 79844899 AAATTAGACGGGGAGCAGATCGAAGATAGCAGATCTAACATTTGTGTGTTTACATCGAAGTAGAT 65 AAATTAGACGGAGAGCAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGAT * 79844964 CGAAGATGATAGATTTGGCGTCTCTGAATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGACA 130 CGAAGATGATAGATTTGGCGTCTCTGAATTAGACGAGGAGCAGATCGAAGATAACAGATCTGACA * * * * 79845029 TTCGTATGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT 195 TTCGTATGTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCT 79845079 ATA 1 ATA 79845082 TTAGACGGGG Statistics Matches: 229, Mismatches: 17, Indels: 3 0.92 0.07 0.01 Matches are distributed among these distances: 244 35 0.15 245 194 0.85 ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27 Consensus pattern (244 bp): ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAAATTTGGCGTCTCTA AATTAGACGGAGAGCAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATC GAAGATGATAGATTTGGCGTCTCTGAATTAGACGAGGAGCAGATCGAAGATAACAGATCTGACAT TCGTATGTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCT Found at i:79845029 original size:335 final size:333 Alignment explanation
Indices: 79844534--79845138 Score: 996 Period size: 335 Copynumber: 1.8 Consensus size: 333 79844524 ATTGACAGGG * ** 79844534 AGCAGATCGAAGAAGCAGATTTGGAGTCTCTGTATTAGACGGAGAGCAGATCGAAGATAGCAGAT 1 AGCAGATCGAAGAAGCAAATTTGGAGTCTCTAAATTAGACGGAGAGCAGATCGAAGATAGCAGAT * * * * 79844599 CTGACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAGATTTGGCGTCTCTGTATTATATG 66 CTAACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAGATTTGGCGTCTCTGAATTAGACG * * 79844664 GAGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGAT 131 GAGAGCAGATCGAAGATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGATGAC * ** 79844729 AGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATTGAAGATAACAGATCTGACATTCGTGAGTT 196 AGATTTGGCGTCTCTATATTAGACGAGGAGCAGATCAAAGATAACAGATCTGACATTCGTGAGTT 79844794 TACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCTATAGCAGATTTGACATTCGTGTGTT 261 TACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCTATAGCAGATTTGACATTCGTGTGTT 79844859 TACATCGA 326 TACATCGA * * * 79844867 AGCAGATCGAAGATGACAAATTTGGCGTCTCTAAATTAGACGGGGAGCAGATCGAAGATAGCAGA 1 AGCAGATCGAAGAAG-CAAATTTGGAGTCTCTAAATTAGACGGAGAGCAGATCGAAGATAGCAGA * * 79844932 TCTAACATTTGTGTGTTTACATCGAAGTAGATCGAAGATGATAGATTTGGCGTCTCTGAATTAGA 65 TCTAACATTCGTGTGTTTACATCGAAG-AGATCGAAGATGACAGATTTGGCGTCTCTGAATTAGA 79844997 C-GAGGAGCAGATCGAAGATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGAT 129 CGGA-GAGCAGATCGAAGATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGAT * * * 79845061 GACAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCGTGT 193 GACAGATTTGGCGTCTCTATATTAGACGAGGAGCAGATCAAAGATAACAGATCTGACATTCGTGA 79845126 GTTTACATCAAAG 258 GTTTACATCAAAG 79845139 CAGACAGATT Statistics Matches: 249, Mismatches: 20, Indels: 4 0.91 0.07 0.01 Matches are distributed among these distances: 333 14 0.06 334 71 0.29 335 164 0.66 ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26 Consensus pattern (333 bp): AGCAGATCGAAGAAGCAAATTTGGAGTCTCTAAATTAGACGGAGAGCAGATCGAAGATAGCAGAT CTAACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAGATTTGGCGTCTCTGAATTAGACG GAGAGCAGATCGAAGATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGATGAC AGATTTGGCGTCTCTATATTAGACGAGGAGCAGATCAAAGATAACAGATCTGACATTCGTGAGTT TACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCTATAGCAGATTTGACATTCGTGTGTT TACATCGA Found at i:79845141 original size:45 final size:45 Alignment explanation
Indices: 79844834--79845142 Score: 156 Period size: 45 Copynumber: 6.9 Consensus size: 45 79844824 TGGCGTCTCT * * 79844834 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAG 1 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG * * * * ** * * 79844879 AT-GACAAATTTGGCGTCTC-TA-AATTAGA-CGGGGAGCAGATCGAAG 1 ATAG-CAGATCTGACAT-TCGTATGTTTACATC--GAAGCAGATCGAAG * * * * 79844924 ATAGCAGATCTAACATTTGTGTGTTTACATCGAAGTAGATCGAAG 1 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG * * * * * * * 79844969 AT-GATAGATTTGGC-GTC-TCTGAATTAGA-CGAGGAGCAGATCGAAG 1 ATAG-CAGATCTGACATTCGTATG-TTTACATCGA--AGCAGATCGAAG 79845014 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG 1 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG * * * * * * * 79845059 AT-GACAGATTTGGCGTCTC-TAT-ATTAGA-CGGGGAGCAGATCAAAG 1 ATAG-CAGATCTGACAT-TCGTATGTTTACATC--GAAGCAGATCGAAG * * 79845104 ATAGCAGATCTGACATTCGTGTGTTTACATCAAAGCAGA 1 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGA 79845143 CAGATTTGGC Statistics Matches: 188, Mismatches: 52, Indels: 48 0.65 0.18 0.17 Matches are distributed among these distances: 43 8 0.04 44 19 0.10 45 132 0.70 46 21 0.11 47 8 0.04 ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27 Consensus pattern (45 bp): ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG Found at i:79846072 original size:8 final size:8 Alignment explanation
Indices: 79846059--79846084 Score: 52 Period size: 8 Copynumber: 3.2 Consensus size: 8 79846049 AGTTGATGGC 79846059 GGCGCGTG 1 GGCGCGTG 79846067 GGCGCGTG 1 GGCGCGTG 79846075 GGCGCGTG 1 GGCGCGTG 79846083 GG 1 GG 79846085 AGCCTGTGGA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 18 1.00 ACGTcount: A:0.00, C:0.23, G:0.65, T:0.12 Consensus pattern (8 bp): GGCGCGTG Found at i:79846621 original size:25 final size:25 Alignment explanation
Indices: 79846589--79846642 Score: 90 Period size: 25 Copynumber: 2.2 Consensus size: 25 79846579 TTTTAATCCT * * 79846589 TTTTAAATTTTTTATAATTTATTTA 1 TTTTAAATATTATATAATTTATTTA 79846614 TTTTAAATATTATATAATTTATTTA 1 TTTTAAATATTATATAATTTATTTA 79846639 TTTT 1 TTTT 79846643 TACTATAAAC Statistics Matches: 27, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 25 27 1.00 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (25 bp): TTTTAAATATTATATAATTTATTTA Found at i:79846707 original size:29 final size:29 Alignment explanation
Indices: 79846672--79846842 Score: 93 Period size: 29 Copynumber: 5.6 Consensus size: 29 79846662 GAACGTAGAA 79846672 ATTATTATATATATTATTTTTATTTTTAT 1 ATTATTATATATATTATTTTTATTTTTAT ** 79846701 ATTATTA-ATTATATTATTTACATTTTTAT 1 ATTATTATA-TATATTATTTTTATTTTTAT * * 79846730 A-TATTATGATTTA-TACATTTTATTATATATCAT 1 ATTATTAT-ATATATTA-TTTTTATT-T-T-T-AT * * 79846763 TTTATTATATACATTATTCATTATATTTTT-T 1 ATTATTATATATATTATT--TT-TATTTTTAT * 79846794 ATT-TTATTATATATTATATAATTATTTATTAT 1 ATTATTA-TATATATTAT-T-TTTATTT-TTAT * 79846826 -TTATTATTTATTATTAT 1 ATTATTATATA-TATTAT 79846843 GTATAATTTT Statistics Matches: 109, Mismatches: 14, Indels: 35 0.69 0.09 0.22 Matches are distributed among these distances: 28 8 0.07 29 34 0.31 30 10 0.09 31 22 0.20 32 12 0.11 33 7 0.06 34 9 0.08 35 3 0.03 36 4 0.04 ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63 Consensus pattern (29 bp): ATTATTATATATATTATTTTTATTTTTAT Found at i:79846796 original size:7 final size:7 Alignment explanation
Indices: 79846786--79846840 Score: 65 Period size: 7 Copynumber: 7.6 Consensus size: 7 79846776 TTATTCATTA * 79846786 TATTTTT 1 TATTTAT 79846793 TATTTTAT 1 TA-TTTAT * 79846801 TATATAT 1 TATTTAT * 79846808 TATATAAT 1 TAT-TTAT 79846816 TATTTAT 1 TATTTAT 79846823 TATTTAT 1 TATTTAT 79846830 TATTTAT 1 TATTTAT 79846837 TATT 1 TATT 79846841 ATGTATAATT Statistics Matches: 41, Mismatches: 5, Indels: 4 0.82 0.10 0.08 Matches are distributed among these distances: 7 30 0.73 8 11 0.27 ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69 Consensus pattern (7 bp): TATTTAT Found at i:79857396 original size:14 final size:15 Alignment explanation
Indices: 79857365--79857398 Score: 52 Period size: 15 Copynumber: 2.3 Consensus size: 15 79857355 GTTTTTCTAT * 79857365 TTTAATTTTTTGAAA 1 TTTAATCTTTTGAAA 79857380 TTTAATCTTTT-AAA 1 TTTAATCTTTTGAAA 79857394 TTTAA 1 TTTAA 79857399 AATTTTAAGT Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 14 8 0.44 15 10 0.56 ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59 Consensus pattern (15 bp): TTTAATCTTTTGAAA Found at i:79868445 original size:19 final size:19 Alignment explanation
Indices: 79868421--79868472 Score: 61 Period size: 19 Copynumber: 2.7 Consensus size: 19 79868411 CTTAGATCCA 79868421 TTTATTTTTATTT-CATTTT 1 TTTATTTTT-TTTCCATTTT * 79868440 TTTATTTTTTTTCCATTTC 1 TTTATTTTTTTTCCATTTT * * 79868459 CTTATTCTTTTTCC 1 TTTATTTTTTTTCC 79868473 CTTTCTTACT Statistics Matches: 29, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 18 3 0.10 19 26 0.90 ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73 Consensus pattern (19 bp): TTTATTTTTTTTCCATTTT Found at i:79868480 original size:18 final size:19 Alignment explanation
Indices: 79868441--79868477 Score: 56 Period size: 19 Copynumber: 1.9 Consensus size: 19 79868431 TTTCATTTTT * 79868441 TTATTTTTTTTCCATTTCC 1 TTATTCTTTTTCCATTTCC * 79868460 TTATTCTTTTTCCCTTTC 1 TTATTCTTTTTCCATTTC 79868478 TTACTTTTTA Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 19 16 1.00 ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68 Consensus pattern (19 bp): TTATTCTTTTTCCATTTCC Found at i:79873380 original size:21 final size:21 Alignment explanation
Indices: 79873356--79873396 Score: 64 Period size: 21 Copynumber: 2.0 Consensus size: 21 79873346 TTTCCTATGA 79873356 TATGAATTGGACTAAATTGAG 1 TATGAATTGGACTAAATTGAG * * 79873377 TATGAATTGTATTAAATTGA 1 TATGAATTGGACTAAATTGA 79873397 TGTTAAATTT Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 21 18 1.00 ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39 Consensus pattern (21 bp): TATGAATTGGACTAAATTGAG Found at i:79874418 original size:17 final size:17 Alignment explanation
Indices: 79874396--79874435 Score: 80 Period size: 17 Copynumber: 2.4 Consensus size: 17 79874386 TTGGTGGATT 79874396 TTGTGACTAGGAGAAGG 1 TTGTGACTAGGAGAAGG 79874413 TTGTGACTAGGAGAAGG 1 TTGTGACTAGGAGAAGG 79874430 TTGTGA 1 TTGTGA 79874436 TGCAGAAAAT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 23 1.00 ACGTcount: A:0.28, C:0.05, G:0.40, T:0.28 Consensus pattern (17 bp): TTGTGACTAGGAGAAGG Found at i:79875476 original size:16 final size:13 Alignment explanation
Indices: 79875439--79875467 Score: 58 Period size: 13 Copynumber: 2.2 Consensus size: 13 79875429 AGACTTATGT 79875439 GGATCAGTGTGGC 1 GGATCAGTGTGGC 79875452 GGATCAGTGTGGC 1 GGATCAGTGTGGC 79875465 GGA 1 GGA 79875468 GACTCAGTGG Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 16 1.00 ACGTcount: A:0.17, C:0.14, G:0.48, T:0.21 Consensus pattern (13 bp): GGATCAGTGTGGC Found at i:79876137 original size:26 final size:26 Alignment explanation
Indices: 79876108--79876262 Score: 110 Period size: 26 Copynumber: 6.2 Consensus size: 26 79876098 TATCTAGAGA 79876108 TCCTGATTAAAGGCTCTTTGTGAGCT 1 TCCTGATTAAAGGCTCTTTGTGAGCT * * * * 79876134 TCCTAATTAAAAGTTCTTTGTGAACT 1 TCCTGATTAAAGGCTCTTTGTGAGCT * * 79876160 TCCTGATT-ATGGCT-TTTATGAGCT 1 TCCTGATTAAAGGCTCTTTGTGAGCT **** * 79876184 TCCT-ATTATATA-GC-CCGAATAAGCT 1 TCCTGATTA-A-AGGCTCTTTGTGAGCT 79876209 TCCTGA-T--AGGCTCTTTGTGAGCT 1 TCCTGATTAAAGGCTCTTTGTGAGCT * * * 79876232 TCCCGATTAATGCCTCTTTGTGAGCT 1 TCCTGATTAAAGGCTCTTTGTGAGCT 79876258 TCCTG 1 TCCTG 79876263 TTACATGGCT Statistics Matches: 95, Mismatches: 24, Indels: 20 0.68 0.17 0.14 Matches are distributed among these distances: 21 1 0.01 22 2 0.02 23 14 0.15 24 13 0.14 25 17 0.18 26 48 0.51 ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39 Consensus pattern (26 bp): TCCTGATTAAAGGCTCTTTGTGAGCT Found at i:79881444 original size:8 final size:8 Alignment explanation
Indices: 79881431--79881473 Score: 54 Period size: 8 Copynumber: 5.4 Consensus size: 8 79881421 AATTGAGTTC 79881431 AAAATATA 1 AAAATATA 79881439 AAAATATA 1 AAAATATA 79881447 AAAATAATA 1 AAAAT-ATA 79881456 ATAAA-ATA 1 A-AAATATA 79881464 AAAA-ATA 1 AAAATATA 79881471 AAA 1 AAA 79881474 TAAGATTCAA Statistics Matches: 33, Mismatches: 0, Indels: 5 0.87 0.00 0.13 Matches are distributed among these distances: 7 9 0.27 8 17 0.52 9 4 0.12 10 3 0.09 ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21 Consensus pattern (8 bp): AAAATATA Found at i:79881464 original size:17 final size:19 Alignment explanation
Indices: 79881431--79881476 Score: 57 Period size: 17 Copynumber: 2.7 Consensus size: 19 79881421 AATTGAGTTC 79881431 AAAAT-ATAA-AAATAT-A 1 AAAATAATAATAAATATAA 79881447 AAAATAATAATAAA-ATAA 1 AAAATAATAATAAATATAA 79881465 AAAATAA-AATAA 1 AAAATAATAATAA 79881477 GATTCAAATG Statistics Matches: 27, Mismatches: 0, Indels: 5 0.84 0.00 0.16 Matches are distributed among these distances: 16 5 0.19 17 11 0.41 18 11 0.41 ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22 Consensus pattern (19 bp): AAAATAATAATAAATATAA Found at i:79882533 original size:14 final size:14 Alignment explanation
Indices: 79882514--79882540 Score: 54 Period size: 14 Copynumber: 1.9 Consensus size: 14 79882504 GGTAAAACTT 79882514 AATAAAATAAAAAG 1 AATAAAATAAAAAG 79882528 AATAAAATAAAAA 1 AATAAAATAAAAA 79882541 TAAGTAAGTC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15 Consensus pattern (14 bp): AATAAAATAAAAAG Found at i:79886425 original size:40 final size:40 Alignment explanation
Indices: 79886345--79886515 Score: 166 Period size: 40 Copynumber: 4.3 Consensus size: 40 79886335 TCTTCGGAAT * * * * ** 79886345 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCAAGTC 1 TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC * * * * 79886384 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC 1 TTAGCCCGGATAAAAGC-ACTAGCACAAATGCCTTCGGGTC * * * 79886424 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC 1 TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC * * * * 79886464 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGAGAC 1 TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC 79886504 TTAGCCCGGATA 1 TTAGCCCGGATA 79886516 TCATTCAAAT Statistics Matches: 111, Mismatches: 18, Indels: 5 0.83 0.13 0.04 Matches are distributed among these distances: 39 5 0.05 40 103 0.93 41 3 0.03 ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23 Consensus pattern (40 bp): TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC Found at i:79907443 original size:14 final size:16 Alignment explanation
Indices: 79907411--79907449 Score: 55 Period size: 14 Copynumber: 2.5 Consensus size: 16 79907401 TAAATAATTA 79907411 TATTATTTATCATATAT 1 TATTATTTA-CATATAT 79907428 TATTATTTA-ATA-AT 1 TATTATTTACATATAT 79907442 TATTATTT 1 TATTATTT 79907450 TGGTTATAAA Statistics Matches: 22, Mismatches: 0, Indels: 3 0.88 0.00 0.12 Matches are distributed among these distances: 14 10 0.45 15 3 0.14 17 9 0.41 ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62 Consensus pattern (16 bp): TATTATTTACATATAT Found at i:79907759 original size:8 final size:9 Alignment explanation
Indices: 79907738--79907762 Score: 50 Period size: 9 Copynumber: 2.8 Consensus size: 9 79907728 AATATTAAAT 79907738 TTTTTTATA 1 TTTTTTATA 79907747 TTTTTTATA 1 TTTTTTATA 79907756 TTTTTTA 1 TTTTTTA 79907763 ATGATGTTTA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 16 1.00 ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80 Consensus pattern (9 bp): TTTTTTATA Found at i:79907816 original size:26 final size:27 Alignment explanation
Indices: 79907783--79907846 Score: 76 Period size: 28 Copynumber: 2.4 Consensus size: 27 79907773 TAAAAAAATC * * * 79907783 TATTTTTA-ATAATTTTAATTTTTTTA 1 TATTTTTATAAAATTTAAAATTTTTTA 79907809 TATTTTTATTAAAATTTAAAATTTTTTA 1 TATTTTTA-TAAAATTTAAAATTTTTTA * 79907837 TTTTTTTATA 1 TATTTTTATA 79907847 TTTTTTTCTA Statistics Matches: 32, Mismatches: 4, Indels: 3 0.82 0.10 0.08 Matches are distributed among these distances: 26 8 0.25 27 2 0.06 28 22 0.69 ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67 Consensus pattern (27 bp): TATTTTTATAAAATTTAAAATTTTTTA Found at i:79910134 original size:51 final size:51 Alignment explanation
Indices: 79910058--79910160 Score: 188 Period size: 51 Copynumber: 2.0 Consensus size: 51 79910048 TCTATGGTAG * 79910058 AGATAATCTCTCATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA 1 AGATAATCTCTAATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA * 79910109 AGATAATCTCTAATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGGCAA 1 AGATAATCTCTAATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA 79910160 A 1 A 79910161 CTCAACAATG Statistics Matches: 50, Mismatches: 2, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 51 50 1.00 ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23 Consensus pattern (51 bp): AGATAATCTCTAATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA Found at i:79914247 original size:17 final size:17 Alignment explanation
Indices: 79914225--79914259 Score: 70 Period size: 17 Copynumber: 2.1 Consensus size: 17 79914215 TAATCGTTTA 79914225 ATGGGTGTATTTTTTCT 1 ATGGGTGTATTTTTTCT 79914242 ATGGGTGTATTTTTTCT 1 ATGGGTGTATTTTTTCT 79914259 A 1 A 79914260 AGGTTGTAAA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 18 1.00 ACGTcount: A:0.14, C:0.06, G:0.23, T:0.57 Consensus pattern (17 bp): ATGGGTGTATTTTTTCT Found at i:79914267 original size:17 final size:17 Alignment explanation
Indices: 79914227--79914267 Score: 64 Period size: 17 Copynumber: 2.4 Consensus size: 17 79914217 ATCGTTTAAT * 79914227 GGGTGTATTTTTTCTAT 1 GGGTGTATTTTTTCTAA 79914244 GGGTGTATTTTTTCTAA 1 GGGTGTATTTTTTCTAA * 79914261 GGTTGTA 1 GGGTGTA 79914268 AAAGAATCTA Statistics Matches: 22, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 17 22 1.00 ACGTcount: A:0.15, C:0.05, G:0.27, T:0.54 Consensus pattern (17 bp): GGGTGTATTTTTTCTAA Found at i:79928555 original size:25 final size:25 Alignment explanation
Indices: 79928507--79928555 Score: 62 Period size: 25 Copynumber: 2.0 Consensus size: 25 79928497 TTAATGCTTA * * * 79928507 GTAAGTTCGTATATAAGCATTTAAT 1 GTAAGTTCATATAAAAGCAATTAAT * 79928532 GTAAGTTCATATAAAAGGAATTAA 1 GTAAGTTCATATAAAAGCAATTAA 79928556 ACTTATCAAT Statistics Matches: 20, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35 Consensus pattern (25 bp): GTAAGTTCATATAAAAGCAATTAAT Found at i:79929203 original size:13 final size:13 Alignment explanation
Indices: 79929185--79929209 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 79929175 TCGAGCACAC 79929185 GCCCGTGTCCCTG 1 GCCCGTGTCCCTG 79929198 GCCCGTGTCCCT 1 GCCCGTGTCCCT 79929210 CACACGGCCT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24 Consensus pattern (13 bp): GCCCGTGTCCCTG Found at i:79929464 original size:31 final size:31 Alignment explanation
Indices: 79929426--79929486 Score: 122 Period size: 31 Copynumber: 2.0 Consensus size: 31 79929416 GACACATGAC 79929426 TGAGCGACACGCCCAAAGGGTTGGCCGTGTA 1 TGAGCGACACGCCCAAAGGGTTGGCCGTGTA 79929457 TGAGCGACACGCCCAAAGGGTTGGCCGTGT 1 TGAGCGACACGCCCAAAGGGTTGGCCGTGT 79929487 GTCACACAAG Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 31 30 1.00 ACGTcount: A:0.21, C:0.26, G:0.36, T:0.16 Consensus pattern (31 bp): TGAGCGACACGCCCAAAGGGTTGGCCGTGTA Found at i:79929745 original size:33 final size:33 Alignment explanation
Indices: 79929699--79929765 Score: 125 Period size: 33 Copynumber: 2.0 Consensus size: 33 79929689 GTATTTAGGA 79929699 TTACCACTCCAATAATCACATTTTATACTTGGC 1 TTACCACTCCAATAATCACATTTTATACTTGGC * 79929732 TTACCACTTCAATAATCACATTTTATACTTGGC 1 TTACCACTCCAATAATCACATTTTATACTTGGC 79929765 T 1 T 79929766 CGTTTTATAA Statistics Matches: 33, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 33 33 1.00 ACGTcount: A:0.30, C:0.25, G:0.06, T:0.39 Consensus pattern (33 bp): TTACCACTCCAATAATCACATTTTATACTTGGC Found at i:79935225 original size:22 final size:22 Alignment explanation
Indices: 79935197--79935318 Score: 61 Period size: 22 Copynumber: 5.3 Consensus size: 22 79935187 TTCCACATCC 79935197 ATCACATTGGCCATTCGGCCTT 1 ATCACATTGGCCATTCGGCCTT ** * * * 79935219 ATCACATATATACACTTTC-ACATT 1 ATCACAT-T-GGC-CATTCGGCCTT 79935243 CATCACATTGGCCATTCGGCCTT 1 -ATCACATTGGCCATTCGGCCTT * * * * 79935266 ATCTCATATATG-CATGTTC-ACATT 1 ATCACAT-T-GGCCA--TTCGGCCTT 79935290 CATCACATTGGCCATTCGGCCTT 1 -ATCACATTGGCCATTCGGCCTT 79935313 ATCACA 1 ATCACA 79935319 CATACACATG Statistics Matches: 70, Mismatches: 18, Indels: 24 0.62 0.16 0.21 Matches are distributed among these distances: 22 26 0.37 23 12 0.17 24 12 0.17 25 20 0.29 ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34 Consensus pattern (22 bp): ATCACATTGGCCATTCGGCCTT Found at i:79935394 original size:49 final size:47 Alignment explanation
Indices: 79935169--79935816 Score: 921 Period size: 47 Copynumber: 13.6 Consensus size: 47 79935159 CCCTTCGGGA * * * 79935169 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC 1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC 79935216 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC * * 79935263 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC * * * 79935310 CTTATCACACATACACA-TGTTCACATTCATCACATTGGTCATTCGGC 1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC 79935357 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC * * * 79935406 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTTGGC 1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC * * 79935453 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC 79935500 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC * * 79935549 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC * * 79935596 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC 1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC * * 79935643 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC 1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC * 79935692 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC 1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC * 79935741 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC 1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC 79935790 CTTATCACATATATACACTTTCACATT 1 CTTATCACATATATACACTTTCACATT 79935817 TATTCAAATA Statistics Matches: 555, Mismatches: 34, Indels: 24 0.91 0.06 0.04 Matches are distributed among these distances: 46 3 0.01 47 328 0.59 49 221 0.40 50 3 0.01 ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34 Consensus pattern (47 bp): CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC Found at i:79935425 original size:143 final size:143 Alignment explanation
Indices: 79935190--79935816 Score: 1059 Period size: 143 Copynumber: 4.4 Consensus size: 143 79935180 TATACACTTC * 79935190 CACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTG 1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG 79935253 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC 66 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC 79935318 ACATACACATGTT 131 ACATACACATGTT * 79935331 CACATTCATCACATTGGTCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG 1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG * 79935396 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTGGCCTTATCAC 66 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC 79935461 ACATACACATGTT 131 ACATACACATGTT 79935474 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG 1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG 79935539 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC 66 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC 79935604 ACATACACATGTT 131 ACATACACATGTT * 79935617 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATCG 1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG * * * * 79935682 GCCATTAGGCCTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTAGGCCTTAT 66 GCCATTCGGCCTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTAT * * 79935746 CACATATATATACACT-TT 128 CAC--ACATACACA-TGTT * 79935764 CACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATT 1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATT 79935817 TATTCAAATA Statistics Matches: 465, Mismatches: 13, Indels: 12 0.95 0.03 0.02 Matches are distributed among these distances: 141 32 0.07 143 327 0.70 145 62 0.13 146 1 0.00 147 42 0.09 148 1 0.00 ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34 Consensus pattern (143 bp): CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC ACATACACATGTT Found at i:79935719 original size:40 final size:42 Alignment explanation
Indices: 79935674--79935815 Score: 130 Period size: 49 Copynumber: 3.1 Consensus size: 42 79935664 TTCACATTCA 79935674 TCACAT-C-GGCCATTAGGCCTTATCACATATATATACACTT 1 TCACATACTGGCCATTAGGCCTTATCACATATATATACACTT 79935714 TCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTT 1 T--CA--CAT-AC--TGGCCATTAGGCCTTATCACATATATATACACTT 79935763 TCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTT 1 T--CA--CAT-AC--TGGCCATTAGGCCTTATCACATATATATACACTT 79935810 TCACAT 1 TCACAT 79935816 TTATTCAAAT Statistics Matches: 93, Mismatches: 0, Indels: 15 0.86 0.00 0.14 Matches are distributed among these distances: 40 1 0.01 42 2 0.02 43 3 0.03 44 3 0.03 45 2 0.02 46 1 0.01 47 13 0.14 49 68 0.73 ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34 Consensus pattern (42 bp): TCACATACTGGCCATTAGGCCTTATCACATATATATACACTT Found at i:79937325 original size:56 final size:56 Alignment explanation
Indices: 79937258--79937377 Score: 231 Period size: 56 Copynumber: 2.1 Consensus size: 56 79937248 TATTAGTTTA 79937258 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT 1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT * 79937314 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT 1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT 79937370 TTGCCCAT 1 TTGCCCAT 79937378 CATCCCTTGT Statistics Matches: 63, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 56 63 1.00 ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45 Consensus pattern (56 bp): TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT Found at i:79940945 original size:37 final size:37 Alignment explanation
Indices: 79940890--79940997 Score: 189 Period size: 37 Copynumber: 2.9 Consensus size: 37 79940880 TAGCTCGAAT * 79940890 AATCCCCACACGTAGTCATCGGGTCTTACCCGGACAA 1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA * * 79940927 AATCTCCACACGTAGTCATCGGGTCTTACTCGGACAT 1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA 79940964 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA 1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA 79940998 ATATATTTCC Statistics Matches: 67, Mismatches: 4, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 37 67 1.00 ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23 Consensus pattern (37 bp): AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA Found at i:79941190 original size:48 final size:48 Alignment explanation
Indices: 79941138--79941283 Score: 238 Period size: 48 Copynumber: 3.0 Consensus size: 48 79941128 ATATATACAC 79941138 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT ** * * 79941186 ATCTCATACATATTTCATGTTAGCCATTCGACTTTACCACATATACAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT * * 79941234 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT 79941282 AT 1 AT 79941284 ATTTATCTTG Statistics Matches: 88, Mismatches: 10, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 48 88 1.00 ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36 Consensus pattern (48 bp): ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT Found at i:79944787 original size:58 final size:56 Alignment explanation
Indices: 79944676--79944862 Score: 240 Period size: 58 Copynumber: 3.3 Consensus size: 56 79944666 CCACTGACCG * * 79944676 ATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTACC 1 ATCTCGCACACATAATGCTCGGTT-AAGGAATTCGCACACACAGTGCCTCAATTACC * 79944732 AATCTCGCACACATAATGCTCGGTTAATGGAATTCGCACACACAGTGCCTCAATTACTG 1 -ATCTCGCACACATAATGCTCGGTTAA-GGAATTCGCACACACAGTGCCTCAATTAC-C * * 79944791 ATCTCGCACACATAGTGCTCGGTTAACGGAATTTGCACACACAGTGCCTCTAA-T--C 1 ATCTCGCACACATAATGCTCGGTTAA-GGAATTCGCACACACAGTGCCTC-AATTACC 79944846 AT-TCGCACACATAATGC 1 ATCTCGCACACATAATGC 79944863 CCATATTCAT Statistics Matches: 118, Mismatches: 8, Indels: 11 0.86 0.06 0.08 Matches are distributed among these distances: 54 14 0.12 55 2 0.02 56 2 0.02 57 23 0.19 58 75 0.64 59 2 0.02 ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24 Consensus pattern (56 bp): ATCTCGCACACATAATGCTCGGTTAAGGAATTCGCACACACAGTGCCTCAATTACC Found at i:79944828 original size:29 final size:29 Alignment explanation
Indices: 79944679--79944837 Score: 114 Period size: 29 Copynumber: 5.5 Consensus size: 29 79944669 CTGACCGATC * * 79944679 TCGCACACATAGTGCTCGGTTGAA--GAAC 1 TCGCACACACAGTGCTCGGTT-AACGGAAT ** * 79944707 TCGCACACACAGTGCCTCAATT-AC-CAAT 1 TCGCACACACAGTG-CTCGGTTAACGGAAT * * * 79944735 CTCGCACACATAATGCTCGGTTAATGGAAT 1 -TCGCACACACAGTGCTCGGTTAACGGAAT ** * 79944765 TCGCACACACAGTGCCTCAATT-ACTG-AT 1 TCGCACACACAGTG-CTCGGTTAACGGAAT * 79944793 CTCGCACACATAGTGCTCGGTTAACGGAAT 1 -TCGCACACACAGTGCTCGGTTAACGGAAT * 79944823 TTGCACACACAGTGC 1 TCGCACACACAGTGC 79944838 CTCTAATCAT Statistics Matches: 99, Mismatches: 23, Indels: 17 0.71 0.17 0.12 Matches are distributed among these distances: 27 1 0.01 28 27 0.27 29 61 0.62 30 10 0.10 ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23 Consensus pattern (29 bp): TCGCACACACAGTGCTCGGTTAACGGAAT Found at i:79945055 original size:43 final size:43 Alignment explanation
Indices: 79944994--79945301 Score: 517 Period size: 43 Copynumber: 7.2 Consensus size: 43 79944984 CCTTGCTCGA ** * 79944994 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAT 1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT 79945037 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT 1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT * 79945080 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATATAT 1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT * * 79945123 ATCACCGGCACAAAGCCTGCTAGGCATGAAGGCCCGAATACAT 1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT * * 79945166 ATCACTGGCACGAAGCCTGCTAGGCACGAAAGCCCGAATACAT 1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT * 79945209 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT 1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT * * 79945252 ATTACCGGCACGAAGCCTGCTAGGCACGAAAGCCCGAATACAT 1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT 79945295 ATCACCG 1 ATCACCG 79945302 AGTTTCATGC Statistics Matches: 247, Mismatches: 18, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 43 247 1.00 ACGTcount: A:0.32, C:0.31, G:0.23, T:0.14 Consensus pattern (43 bp): ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT Found at i:79947051 original size:37 final size:37 Alignment explanation
Indices: 79946996--79947103 Score: 189 Period size: 37 Copynumber: 2.9 Consensus size: 37 79946986 TAGCTCGAAT * 79946996 AATCCCCACACGTAGTCATCGGGTCTTACCCGGACAA 1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA * * 79947033 AATCTCCACACGTAGTCATCGGGTCTTACTCGGACAT 1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA 79947070 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA 1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA 79947104 ATATATTTCC Statistics Matches: 67, Mismatches: 4, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 37 67 1.00 ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23 Consensus pattern (37 bp): AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA Found at i:79947362 original size:48 final size:46 Alignment explanation
Indices: 79947244--79947385 Score: 230 Period size: 46 Copynumber: 3.0 Consensus size: 46 79947234 ATATATACAC 79947244 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT ** 79947290 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATGCAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT--AT * * 79947338 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATAT 1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT 79947384 AT 1 AT 79947386 ATTTATCTTG Statistics Matches: 88, Mismatches: 6, Indels: 4 0.90 0.06 0.04 Matches are distributed among these distances: 46 46 0.52 48 42 0.48 ACGTcount: A:0.30, C:0.27, G:0.08, T:0.36 Consensus pattern (46 bp): ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT Found at i:79951509 original size:42 final size:42 Alignment explanation
Indices: 79951379--79951520 Score: 135 Period size: 40 Copynumber: 3.4 Consensus size: 42 79951369 GCGATATCTT * *** * * * 79951379 AGATATCGTCTTACATGTAATCTCGTATCGATGCCAATAGCCC 1 AGATATGGTCTTACACAAAATCTCATATAGATGCC-ATATCCC * * * * 79951422 AGCTATGGCCTTACACAAAATCTTATATTGATGCC--ATCCC 1 AGATATGGTCTTACACAAAATCTCATATAGATGCCATATCCC * * * 79951462 AGATATGGTCTTATACGAAGTCTCATATAGATGCCATATCCC 1 AGATATGGTCTTACACAAAATCTCATATAGATGCCATATCCC 79951504 AGATATGGTCTTACACA 1 AGATATGGTCTTACACA 79951521 TAGTTTTAGT Statistics Matches: 78, Mismatches: 19, Indels: 5 0.76 0.19 0.05 Matches are distributed among these distances: 40 32 0.41 42 20 0.26 43 26 0.33 ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30 Consensus pattern (42 bp): AGATATGGTCTTACACAAAATCTCATATAGATGCCATATCCC Found at i:79951918 original size:51 final size:49 Alignment explanation
Indices: 79951844--79951942 Score: 171 Period size: 51 Copynumber: 2.0 Consensus size: 49 79951834 TCACATTATG * 79951844 GAAAAATTATTTTTGCCCTTAAAGTTTCACATTTTTACATTTTAGTCCT 1 GAAAAATTATTTTTGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCCT 79951893 GAAAAATTATATTTTTGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCC 1 GAAAAA-T-TATTTTTGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCC 79951943 CTAGGCTTGT Statistics Matches: 47, Mismatches: 1, Indels: 2 0.94 0.02 0.04 Matches are distributed among these distances: 49 6 0.13 50 1 0.02 51 40 0.85 ACGTcount: A:0.29, C:0.16, G:0.09, T:0.45 Consensus pattern (49 bp): GAAAAATTATTTTTGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCCT Found at i:79961327 original size:5 final size:5 Alignment explanation
Indices: 79961317--79961409 Score: 145 Period size: 5 Copynumber: 18.6 Consensus size: 5 79961307 AATAATTAAG * 79961317 TATAT TATAT TATAT TATAT TATAT TATA- T-TCT TATAT TATAT TATAT 1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT 79961365 TATAT TATAT TATAT TATAT TATAT TATAT TATTAT TATTAT TAT 1 TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TA-TAT TAT 79961410 TATATATAAA Statistics Matches: 83, Mismatches: 2, Indels: 6 0.91 0.02 0.07 Matches are distributed among these distances: 3 1 0.01 4 2 0.02 5 69 0.83 6 11 0.13 ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61 Consensus pattern (5 bp): TATAT Found at i:79961410 original size:15 final size:15 Alignment explanation
Indices: 79961319--79961412 Score: 81 Period size: 13 Copynumber: 7.2 Consensus size: 15 79961309 TAATTAAGTA 79961319 TATTA-TATTA-TAT 1 TATTATTATTATTAT 79961332 TA-TATTA-TATTA- 1 TATTATTATTATTAT * 79961344 TATTCTTA-TATTA- 1 TATTATTATTATTAT 79961357 TATTA-TATTA-TAT 1 TATTATTATTATTAT 79961370 TA-TATTA-TATTA- 1 TATTATTATTATTAT 79961382 TATTA-TATTA-TAT 1 TATTATTATTATTAT 79961395 TATTATTATTATTAT 1 TATTATTATTATTAT 79961410 TAT 1 TAT 79961413 ATATAAAAGA Statistics Matches: 67, Mismatches: 2, Indels: 22 0.74 0.02 0.24 Matches are distributed among these distances: 12 20 0.30 13 36 0.54 14 5 0.07 15 6 0.09 ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62 Consensus pattern (15 bp): TATTATTATTATTAT Found at i:79962609 original size:6 final size:6 Alignment explanation
Indices: 79962598--79962622 Score: 50 Period size: 6 Copynumber: 4.2 Consensus size: 6 79962588 TTGTGTACCG 79962598 TACTGT TACTGT TACTGT TACTGT T 1 TACTGT TACTGT TACTGT TACTGT T 79962623 CCGGCTTCGG Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 19 1.00 ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52 Consensus pattern (6 bp): TACTGT Found at i:79968635 original size:5 final size:5 Alignment explanation
Indices: 79968625--79968688 Score: 85 Period size: 5 Copynumber: 12.6 Consensus size: 5 79968615 AATAATTAAG * * 79968625 TATAT TATAT TATAT TATAT TCT-T ATATTCT TATAT TATAT TATAT TATAT 1 TATAT TATAT TATAT TATAT TATAT -TA-TAT TATAT TATAT TATAT TATAT 79968676 TATAT TATAT TAT 1 TATAT TATAT TAT 79968689 TATATATAAA Statistics Matches: 53, Mismatches: 3, Indels: 6 0.85 0.05 0.10 Matches are distributed among these distances: 4 1 0.02 5 48 0.91 6 3 0.06 7 1 0.02 ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61 Consensus pattern (5 bp): TATAT Found at i:79968691 original size:8 final size:8 Alignment explanation
Indices: 79968627--79968693 Score: 57 Period size: 8 Copynumber: 8.0 Consensus size: 8 79968617 TAATTAAGTA 79968627 TATTATATT 1 TATTATA-T 79968636 ATATTATAT 1 -TATTATAT * 79968645 TCTTATAT 1 TATTATAT * 79968653 TCTTATAT 1 TATTATAT 79968661 TA-TAT-T 1 TATTATAT 79968667 ATATTATATT 1 -TATTATA-T 79968677 ATATTATAT 1 -TATTATAT 79968686 TATTATAT 1 TATTATAT 79968694 ATAAAAGAAA Statistics Matches: 51, Mismatches: 2, Indels: 10 0.81 0.03 0.16 Matches are distributed among these distances: 6 1 0.02 7 5 0.10 8 27 0.53 9 2 0.04 10 16 0.31 ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61 Consensus pattern (8 bp): TATTATAT Found at i:79969831 original size:6 final size:6 Alignment explanation
Indices: 79969812--79969844 Score: 57 Period size: 6 Copynumber: 5.5 Consensus size: 6 79969802 GTGTGTCGAA * 79969812 TACTGT TACCGT TACTGT TACTGT TACTGT TAC 1 TACTGT TACTGT TACTGT TACTGT TACTGT TAC 79969845 GGATTTGTTC Statistics Matches: 25, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 6 25 1.00 ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45 Consensus pattern (6 bp): TACTGT Found at i:79971064 original size:29 final size:29 Alignment explanation
Indices: 79971022--79971079 Score: 107 Period size: 29 Copynumber: 2.0 Consensus size: 29 79971012 TCTAGTAAGA * 79971022 TTGTTTCCCTTTCCCTTTTTGATGCAAAG 1 TTGTTTCCCTTTCCCCTTTTGATGCAAAG 79971051 TTGTTTCCCTTTCCCCTTTTGATGCAAAG 1 TTGTTTCCCTTTCCCCTTTTGATGCAAAG 79971080 CTATCTTGTT Statistics Matches: 28, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 29 28 1.00 ACGTcount: A:0.14, C:0.26, G:0.14, T:0.47 Consensus pattern (29 bp): TTGTTTCCCTTTCCCCTTTTGATGCAAAG Found at i:79976279 original size:29 final size:29 Alignment explanation
Indices: 79976237--79976295 Score: 100 Period size: 29 Copynumber: 2.0 Consensus size: 29 79976227 AATCTCCGAT * 79976237 AATAACCAGCTAGTCCCAAAAAACTTCAA 1 AATAACCAGCTAGTCCCAAAAAAATTCAA * 79976266 AATAACTAGCTAGTCCCAAAAAAATTCAA 1 AATAACCAGCTAGTCCCAAAAAAATTCAA 79976295 A 1 A 79976296 CTTCTAACAC Statistics Matches: 28, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 29 28 1.00 ACGTcount: A:0.51, C:0.24, G:0.07, T:0.19 Consensus pattern (29 bp): AATAACCAGCTAGTCCCAAAAAAATTCAA Found at i:79980935 original size:31 final size:31 Alignment explanation
Indices: 79980900--79980964 Score: 112 Period size: 31 Copynumber: 2.1 Consensus size: 31 79980890 AGGCATTGGC 79980900 ACATACATGCATATATATAAAATATAAGCTT 1 ACATACATGCATATATATAAAATATAAGCTT * * 79980931 ACATACATGCATATATATAACATATAATCTT 1 ACATACATGCATATATATAAAATATAAGCTT 79980962 ACA 1 ACA 79980965 ACCAAAATGA Statistics Matches: 32, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 31 32 1.00 ACGTcount: A:0.48, C:0.15, G:0.05, T:0.32 Consensus pattern (31 bp): ACATACATGCATATATATAAAATATAAGCTT Found at i:79988668 original size:9 final size:9 Alignment explanation
Indices: 79988651--79988687 Score: 56 Period size: 9 Copynumber: 4.1 Consensus size: 9 79988641 TTAATTTAGG * 79988651 TTTATTTAA 1 TTTAATTAA 79988660 TTTAATTAA 1 TTTAATTAA * 79988669 TTTAATTAG 1 TTTAATTAA 79988678 TTTAATTAA 1 TTTAATTAA 79988687 T 1 T 79988688 ACTTTAATTT Statistics Matches: 25, Mismatches: 3, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 25 1.00 ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59 Consensus pattern (9 bp): TTTAATTAA Found at i:79990127 original size:35 final size:35 Alignment explanation
Indices: 79990013--79990126 Score: 115 Period size: 36 Copynumber: 3.2 Consensus size: 35 79990003 ACATCATCAG * * * 79990013 TCCAACCATAACACGCCAGATGCTCATACGAGCCAA 1 TCCAACCATAACACGCCA-AAGCTCATAAGAGCTAA * * * 79990049 TCC--CTCATAAACACACCAAATGTTCACAAGAGCTAA 1 TCCAAC-CAT-AACACGCCAAA-GCTCATAAGAGCTAA * 79990085 TCCAACCGTAACACGCCAAAGCTCATAAGAGCTAA 1 TCCAACCATAACACGCCAAAGCTCATAAGAGCTAA 79990120 TCCAACC 1 TCCAACC 79990127 GAAACACACC Statistics Matches: 63, Mismatches: 10, Indels: 11 0.75 0.12 0.13 Matches are distributed among these distances: 34 1 0.02 35 24 0.38 36 35 0.56 37 2 0.03 38 1 0.02 ACGTcount: A:0.39, C:0.34, G:0.11, T:0.16 Consensus pattern (35 bp): TCCAACCATAACACGCCAAAGCTCATAAGAGCTAA Found at i:79992729 original size:22 final size:22 Alignment explanation
Indices: 79992701--79992745 Score: 90 Period size: 22 Copynumber: 2.0 Consensus size: 22 79992691 TGAAAAAGAC 79992701 TGATTAATAAAACAAATTCATT 1 TGATTAATAAAACAAATTCATT 79992723 TGATTAATAAAACAAATTCATT 1 TGATTAATAAAACAAATTCATT 79992745 T 1 T 79992746 ACTACAATTT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 22 23 1.00 ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38 Consensus pattern (22 bp): TGATTAATAAAACAAATTCATT Found at i:80002185 original size:20 final size:20 Alignment explanation
Indices: 80002144--80002188 Score: 56 Period size: 20 Copynumber: 2.2 Consensus size: 20 80002134 TTGGTATCAA * 80002144 TATTGGTACTTAGAGGTAAG 1 TATTGGTACTTAGAGCTAAG * 80002164 TATTGGTACTGTA-AGCTTAG 1 TATTGGTACT-TAGAGCTAAG 80002184 TATTG 1 TATTG 80002189 ATACCTTCTG Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 20 20 0.91 21 2 0.09 ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40 Consensus pattern (20 bp): TATTGGTACTTAGAGCTAAG Found at i:80006729 original size:44 final size:44 Alignment explanation
Indices: 80006677--80006764 Score: 167 Period size: 44 Copynumber: 2.0 Consensus size: 44 80006667 GAATGTTTCA 80006677 AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTTGT 1 AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTTGT * 80006721 AATTATAAATGAAATTTTATGGCTTGGTTTGCATGATTGCTTGT 1 AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTTGT 80006765 GTTTTAGTCC Statistics Matches: 43, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 44 43 1.00 ACGTcount: A:0.27, C:0.08, G:0.20, T:0.44 Consensus pattern (44 bp): AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTTGT Found at i:80008654 original size:55 final size:56 Alignment explanation
Indices: 80008564--80008714 Score: 241 Period size: 55 Copynumber: 2.7 Consensus size: 56 80008554 GAGATTGGCG * * * * 80008564 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCA 1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA 80008621 CTAAGT-TGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA 1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA * 80008676 CTAAGTGTGCGAGTTTGATTATATAGCACTGAGTGTGCG 1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCG 80008715 GACTTAATAT Statistics Matches: 88, Mismatches: 5, Indels: 3 0.92 0.05 0.03 Matches are distributed among these distances: 55 43 0.49 56 39 0.44 57 6 0.07 ACGTcount: A:0.27, C:0.12, G:0.26, T:0.34 Consensus pattern (56 bp): CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA Found at i:80008667 original size:28 final size:28 Alignment explanation
Indices: 80008564--80008714 Score: 241 Period size: 28 Copynumber: 5.4 Consensus size: 28 80008554 GAGATTGGCG * * * * 80008564 CTAAGTGTGCGGGTTTAAATTGTACAGCA 1 CTAAGTGTGCGAGTTT-GATTATATAGCA 80008593 CTAAGTGTGCGAGTTTGATTATATAGCA 1 CTAAGTGTGCGAGTTTGATTATATAGCA 80008621 CTAAGT-TGCGAGTTTGATTATATAGCA 1 CTAAGTGTGCGAGTTTGATTATATAGCA 80008648 CTAAGTGTGCGAGTTTGATTATATAGCA 1 CTAAGTGTGCGAGTTTGATTATATAGCA 80008676 CTAAGTGTGCGAGTTTGATTATATAGCA 1 CTAAGTGTGCGAGTTTGATTATATAGCA * 80008704 CTGAGTGTGCG 1 CTAAGTGTGCG 80008715 GACTTAATAT Statistics Matches: 116, Mismatches: 5, Indels: 3 0.94 0.04 0.02 Matches are distributed among these distances: 27 27 0.23 28 74 0.64 29 15 0.13 ACGTcount: A:0.27, C:0.12, G:0.26, T:0.34 Consensus pattern (28 bp): CTAAGTGTGCGAGTTTGATTATATAGCA Found at i:80008726 original size:83 final size:84 Alignment explanation
Indices: 80008564--80008727 Score: 226 Period size: 83 Copynumber: 2.0 Consensus size: 84 80008554 GAGATTGGCG * * 80008564 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTTG 1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTTG * * 80008629 CGAGTTTGATTATATAGCA 66 CGAGCTTGAATATATAGCA * * * 80008648 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCACTGAGTGT 1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGT-T 80008712 GCG-GACTT-AATATATA 65 GCGAG-CTTGAATATATA 80008728 CTTTTGAATC Statistics Matches: 71, Mismatches: 7, Indels: 5 0.86 0.08 0.06 Matches are distributed among these distances: 83 50 0.70 84 21 0.30 ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35 Consensus pattern (84 bp): CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTTG CGAGCTTGAATATATAGCA Found at i:80016695 original size:28 final size:28 Alignment explanation
Indices: 80016591--80016713 Score: 176 Period size: 28 Copynumber: 4.4 Consensus size: 28 80016581 GAGATTGGCG * * * * 80016591 CTAAGTGTGCGGGTTTAAATTGTACAGCA 1 CTAAGTGTGCGAGTTT-GATTATATAGCA 80016620 CTAAGTGTGCGAGTTTGATTATATAGCA 1 CTAAGTGTGCGAGTTTGATTATATAGCA 80016648 CTAAGTG-GCGAGTTTGATTATATAGCA 1 CTAAGTGTGCGAGTTTGATTATATAGCA * 80016675 CTAAGTGTGCGAGTTTGATTACATAGCA 1 CTAAGTGTGCGAGTTTGATTATATAGCA * 80016703 CTGAGTGTGCG 1 CTAAGTGTGCG 80016714 GACTTAATAT Statistics Matches: 87, Mismatches: 6, Indels: 3 0.91 0.06 0.03 Matches are distributed among these distances: 27 27 0.31 28 45 0.52 29 15 0.17 ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33 Consensus pattern (28 bp): CTAAGTGTGCGAGTTTGATTATATAGCA Found at i:80016725 original size:55 final size:55 Alignment explanation
Indices: 80016616--80016726 Score: 154 Period size: 55 Copynumber: 2.0 Consensus size: 55 80016606 TAAATTGTAC * * * 80016616 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGGCGAGTTTGATTATAT 1 AGCACTAAGTGTGCGAGTTTGATTACATAGCACTAAGTGGCGAGCTTGAATATAT * 80016671 AGCACTAAGTGTGCGAGTTTGATTACATAGCACTGAGTGTGCG-GACTT-AATATAT 1 AGCACTAAGTGTGCGAGTTTGATTACATAGCACTAAGTG-GCGAG-CTTGAATATAT 80016726 A 1 A 80016727 CTTTTGAATC Statistics Matches: 50, Mismatches: 4, Indels: 4 0.86 0.07 0.07 Matches are distributed among these distances: 55 45 0.90 56 5 0.10 ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32 Consensus pattern (55 bp): AGCACTAAGTGTGCGAGTTTGATTACATAGCACTAAGTGGCGAGCTTGAATATAT Found at i:80032004 original size:43 final size:43 Alignment explanation
Indices: 80031943--80032030 Score: 167 Period size: 43 Copynumber: 2.0 Consensus size: 43 80031933 TATCCTTATA 80031943 CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATAGTAG 1 CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATAGTAG * 80031986 CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATGGTAG 1 CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATAGTAG 80032029 CA 1 CA 80032031 GGGAAAGTAG Statistics Matches: 44, Mismatches: 1, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 43 44 1.00 ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30 Consensus pattern (43 bp): CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATAGTAG Found at i:80041427 original size:54 final size:53 Alignment explanation
Indices: 80041344--80041548 Score: 169 Period size: 54 Copynumber: 3.8 Consensus size: 53 80041334 TCCTTTTAAA * * * 80041344 TTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAAC 1 TTACCAATG-CATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC * * * * * * * ** 80041397 TCACCATTTGCAATGCCTTGGCATGGTCTTACATGGGATCTTTACCTTATCGTAGT 1 TTACCA-ATGC-ATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AAC * * * * * 80041453 TTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAAC 1 TTACCAATG-CATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC * * * 80041507 TTACCAATGTCATGCTTTGGCATGGTCTTACCTGGTATCCTT 1 TTACCAATG-CATGCCTTGACATGGTCTTACATGGTATCCTT 80041549 AAACCCTAAT Statistics Matches: 117, Mismatches: 30, Indels: 9 0.75 0.19 0.06 Matches are distributed among these distances: 53 6 0.05 54 71 0.61 55 34 0.29 56 6 0.05 ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39 Consensus pattern (53 bp): TTACCAATGCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC Found at i:80041667 original size:13 final size:13 Alignment explanation
Indices: 80041649--80041673 Score: 50 Period size: 13 Copynumber: 1.9 Consensus size: 13 80041639 ATCATCAAGA 80041649 AATAAATTTATAT 1 AATAAATTTATAT 80041662 AATAAATTTATA 1 AATAAATTTATA 80041674 GATGCTGAAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (13 bp): AATAAATTTATAT Found at i:80043279 original size:79 final size:82 Alignment explanation
Indices: 80043168--80043352 Score: 229 Period size: 79 Copynumber: 2.3 Consensus size: 82 80043158 GCTACTCGTT * * * 80043168 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC 1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC * * 80043231 GGATTTAGTAAC-TCGCA 65 GGATATAGTAACTTAGCA * ** 80043248 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG 1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG * * 80043311 GATATGGTCACTTAGCA 66 GATATAGTAACTTAGCA 80043328 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 80043353 CATCATTCAA Statistics Matches: 91, Mismatches: 10, Indels: 8 0.83 0.09 0.07 Matches are distributed among these distances: 78 3 0.03 79 54 0.59 80 34 0.37 ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25 Consensus pattern (82 bp): CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG GATATAGTAACTTAGCA Found at i:80043352 original size:40 final size:40 Alignment explanation
Indices: 80043149--80043352 Score: 229 Period size: 40 Copynumber: 5.1 Consensus size: 40 80043139 CGGAATTTAA ** * 80043149 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC 1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC * * * 80043189 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC 1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC * 80043229 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC 1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC * * 80043268 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT 1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC * * * 80043308 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC 1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC 80043348 CCGGA 1 CCGGA 80043353 CATCATTCAA Statistics Matches: 139, Mismatches: 18, Indels: 14 0.81 0.11 0.08 Matches are distributed among these distances: 38 2 0.01 39 33 0.24 40 92 0.66 41 12 0.09 ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25 Consensus pattern (40 bp): CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC Found at i:80049746 original size:42 final size:42 Alignment explanation
Indices: 80049687--80049772 Score: 154 Period size: 42 Copynumber: 2.0 Consensus size: 42 80049677 TTCAAAATCG * 80049687 TTCCAAAATCATTTTCATTGCTAGAACTTACTCATGTCATTC 1 TTCCAAAATCATTTTCATTGCTAGAACTTAATCATGTCATTC * 80049729 TTCCAAGATCATTTTCATTGCTAGAACTTAATCATGTCATTC 1 TTCCAAAATCATTTTCATTGCTAGAACTTAATCATGTCATTC 80049771 TT 1 TT 80049773 ACCATCAAGG Statistics Matches: 42, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 42 42 1.00 ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42 Consensus pattern (42 bp): TTCCAAAATCATTTTCATTGCTAGAACTTAATCATGTCATTC Found at i:80053940 original size:50 final size:50 Alignment explanation
Indices: 80053825--80054102 Score: 226 Period size: 50 Copynumber: 5.5 Consensus size: 50 80053815 TGAGAACACA * * * * * 80053825 TGTGTAGTACTATGTGCAGGCTACTATGTGCTTA--AGATGGTTTTAGATCACG 1 TGTGTAGTACTAAGTGCAGGCTACTACGTG--TACCAGAT--ATTTAGGTCACT * * 80053877 TGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCGCT 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCACT * * * * * * * * * 80053927 TGTATAGTACTAAGTGCAGGCAACTATGCGTACCCGACAACTTCA-ATCACG 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TA-TTTAGGTCACT * * * ** 80053978 TGTGTAGTACTAAGTGCAAGCTACTACGTCTATCAGATGGTTAGGTCACT 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCACT * * * 80054028 TGTGTAGTACTAAGTGCAGGCCACTACATGTACCAGAT-TGTT-GGTCGCAT 1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAT-TTAGGTCAC-T 80054078 T-TGTAGTACTAAGTGCAGGCTACTA 1 TGTGTAGTACTAAGTGCAGGCTACTA 80054103 TACATACCAG Statistics Matches: 180, Mismatches: 39, Indels: 17 0.76 0.17 0.07 Matches are distributed among these distances: 49 30 0.17 50 83 0.46 51 33 0.18 52 34 0.19 ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31 Consensus pattern (50 bp): TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCACT Found at i:80054005 original size:101 final size:101 Alignment explanation
Indices: 80053871--80054053 Score: 285 Period size: 101 Copynumber: 1.8 Consensus size: 101 80053861 ATGGTTTTAG * * * * * 80053871 ATCACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCGCTTGTATAGTA 1 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTACCAGATAGTTAGGTCACTTGTATAGTA 80053936 CTAAGTGCAGGCAACTATGCGTACCCGACAACTTCA 66 CTAAGTGCAGGCAACTATGCGTACCCGACAACTTCA * * * 80053972 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTATCAGATGGTTAGGTCACTTGTGTAGTA 1 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTACCAGATAGTTAGGTCACTTGTATAGTA * 80054037 CTAAGTGCAGGCCACTA 66 CTAAGTGCAGGCAACTA 80054054 CATGTACCAG Statistics Matches: 73, Mismatches: 9, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 101 73 1.00 ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29 Consensus pattern (101 bp): ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTACCAGATAGTTAGGTCACTTGTATAGTA CTAAGTGCAGGCAACTATGCGTACCCGACAACTTCA Found at i:80054145 original size:150 final size:152 Alignment explanation
Indices: 80053828--80054145 Score: 340 Period size: 150 Copynumber: 2.1 Consensus size: 152 80053818 GAACACATGT * * * * 80053828 GTAGTACTATGTGCAGGCTACTATGTGCTTAAGATGGTTTTAGATCACGTGTTTAGTACTAAGTG 1 GTAGTAATATGTGCAAGCTACTACGTGCTTAAGATGG-TTTAGATCACGTGTGTAGTACTAAGTG * * * * 80053893 CAGGCTACTACGTGTACCAGATATTTAGGTCGCTTGTATAGTACTAAGTGCAGGCAACTATGCGT 65 CAGGCCACTACATGTACCAGATATTTAGGTCGCTTGTATAGTACTAAGTGCAGGCAACTATACAT * ** * 80053958 ACCCGACAACTTCAATCACGTGT 130 ACCAGACAACTTCAATCACAAGG * * * * * 80053981 GTAGTACTAAGTGCAAGCTACTACGT-CTATCAGATGG-TTAGGTCACTTGTGTAGTACTAAGTG 1 GTAGTAATATGTGCAAGCTACTACGTGCT-TAAGATGGTTTAGATCACGTGTGTAGTACTAAGTG * * 80054044 CAGGCCACTACATGTACCAGAT-TGTT-GGTCGCATT-TGTAGTACTAAGTGCAGGCTACTATAC 65 CAGGCCACTACATGTACCAGATAT-TTAGGTCGC-TTGTATAGTACTAAGTGCAGGCAACTATAC * * ** * 80054106 ATACCAGATAGCTTCGGTTACAAGG 128 ATACCAGACAACTTCAATCACAAGG * 80054131 GTGGTAATATGTGCA 1 GTAGTAATATGTGCA 80054146 GGCAACCGTG Statistics Matches: 137, Mismatches: 25, Indels: 9 0.80 0.15 0.05 Matches are distributed among these distances: 150 58 0.42 151 47 0.34 152 2 0.01 153 30 0.22 ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31 Consensus pattern (152 bp): GTAGTAATATGTGCAAGCTACTACGTGCTTAAGATGGTTTAGATCACGTGTGTAGTACTAAGTGC AGGCCACTACATGTACCAGATATTTAGGTCGCTTGTATAGTACTAAGTGCAGGCAACTATACATA CCAGACAACTTCAATCACAAGG Found at i:80055313 original size:20 final size:20 Alignment explanation
Indices: 80055288--80055344 Score: 105 Period size: 20 Copynumber: 2.9 Consensus size: 20 80055278 TTATGAATAC 80055288 ATCATGTGCATATCATACAT 1 ATCATGTGCATATCATACAT * 80055308 ATCATGTGCATATCGTACAT 1 ATCATGTGCATATCATACAT 80055328 ATCATGTGCATATCATA 1 ATCATGTGCATATCATA 80055345 TCATTATTGT Statistics Matches: 35, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 20 35 1.00 ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35 Consensus pattern (20 bp): ATCATGTGCATATCATACAT Found at i:80055319 original size:11 final size:11 Alignment explanation
Indices: 80055288--80055343 Score: 66 Period size: 11 Copynumber: 5.5 Consensus size: 11 80055278 TTATGAATAC 80055288 ATCATGTGCAT 1 ATCATGTGCAT * 80055299 ATCA--TACAT 1 ATCATGTGCAT 80055308 ATCATGTGCAT 1 ATCATGTGCAT * 80055319 ATC--GTACAT 1 ATCATGTGCAT 80055328 ATCATGTGCAT 1 ATCATGTGCAT 80055339 ATCAT 1 ATCAT 80055344 ATCATTATTG Statistics Matches: 37, Mismatches: 4, Indels: 8 0.76 0.08 0.16 Matches are distributed among these distances: 9 16 0.43 11 21 0.57 ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36 Consensus pattern (11 bp): ATCATGTGCAT Found at i:80055419 original size:25 final size:25 Alignment explanation
Indices: 80055391--80055438 Score: 69 Period size: 25 Copynumber: 1.9 Consensus size: 25 80055381 ATAATTAAAC * * * 80055391 CCTAGGGGTATAATGGTCATTTTTA 1 CCTAGGGGCAAAATAGTCATTTTTA 80055416 CCTAGGGGCAAAATAGTCATTTT 1 CCTAGGGGCAAAATAGTCATTTT 80055439 CATACTATAA Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35 Consensus pattern (25 bp): CCTAGGGGCAAAATAGTCATTTTTA Found at i:80057848 original size:18 final size:17 Alignment explanation
Indices: 80057820--80057857 Score: 51 Period size: 16 Copynumber: 2.2 Consensus size: 17 80057810 AATAATTTAG 80057820 TAACTATGACTCGAGAAAA 1 TAACTATGACT--AGAAAA 80057839 TAAC-ATGACTAGAAAA 1 TAACTATGACTAGAAAA 80057855 TAA 1 TAA 80057858 GTAAAAGTGT Statistics Matches: 19, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 16 9 0.47 18 6 0.32 19 4 0.21 ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21 Consensus pattern (17 bp): TAACTATGACTAGAAAA Found at i:80059145 original size:17 final size:17 Alignment explanation
Indices: 80059125--80059159 Score: 70 Period size: 17 Copynumber: 2.1 Consensus size: 17 80059115 TCTCAAAAGC 80059125 ACAAAAATTATCAAGAA 1 ACAAAAATTATCAAGAA 80059142 ACAAAAATTATCAAGAA 1 ACAAAAATTATCAAGAA 80059159 A 1 A 80059160 AGTCATCAAA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 18 1.00 ACGTcount: A:0.66, C:0.11, G:0.06, T:0.17 Consensus pattern (17 bp): ACAAAAATTATCAAGAA Found at i:80060106 original size:23 final size:24 Alignment explanation
Indices: 80060068--80060115 Score: 80 Period size: 23 Copynumber: 2.0 Consensus size: 24 80060058 CTAATTTGTG * 80060068 AGTAAAAGTTTTTAGTACTAAAGT 1 AGTAAAAGTTTTTAGTACAAAAGT 80060092 AGTAAAA-TTTTTAGTACAAAAGT 1 AGTAAAAGTTTTTAGTACAAAAGT 80060115 A 1 A 80060116 TTCTTTCTTT Statistics Matches: 23, Mismatches: 1, Indels: 1 0.92 0.04 0.04 Matches are distributed among these distances: 23 16 0.70 24 7 0.30 ACGTcount: A:0.46, C:0.04, G:0.15, T:0.35 Consensus pattern (24 bp): AGTAAAAGTTTTTAGTACAAAAGT Found at i:80060167 original size:21 final size:21 Alignment explanation
Indices: 80060128--80060180 Score: 63 Period size: 21 Copynumber: 2.4 Consensus size: 21 80060118 CTTTCTTTTT * 80060128 TATGATATATATTTAATTTGAGA 1 TATGATAT-TATTTAATTT-AAA 80060151 TATGATATTATTT-ATTTAAA 1 TATGATATTATTTAATTTAAA 80060171 TCATGATATT 1 T-ATGATATT 80060181 GGTAATCAGC Statistics Matches: 28, Mismatches: 1, Indels: 4 0.85 0.03 0.12 Matches are distributed among these distances: 20 3 0.11 21 12 0.43 22 5 0.18 23 8 0.29 ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51 Consensus pattern (21 bp): TATGATATTATTTAATTTAAA Found at i:80065073 original size:41 final size:41 Alignment explanation
Indices: 80065016--80065097 Score: 164 Period size: 41 Copynumber: 2.0 Consensus size: 41 80065006 CTGATACTTC 80065016 GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT 1 GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT 80065057 GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT 1 GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT 80065098 TGTTAAACAA Statistics Matches: 41, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 41 41 1.00 ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32 Consensus pattern (41 bp): GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT Found at i:80068242 original size:79 final size:81 Alignment explanation
Indices: 80068106--80068290 Score: 236 Period size: 79 Copynumber: 2.3 Consensus size: 81 80068096 TTGAATGATG * 80068106 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT 80068170 TGTGCGAGATACTA-A 66 TGTGCGAGATACTATA * * * ** 80068185 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA 1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA * 80068247 TTTGTGCGAGTTACTATA 64 TTTGTGCGAGATACTATA * * 80068265 ACCGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 80068291 AACGAGTAGC Statistics Matches: 92, Mismatches: 9, Indels: 8 0.84 0.08 0.07 Matches are distributed among these distances: 78 1 0.01 79 58 0.63 80 33 0.36 ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25 Consensus pattern (81 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT TGTGCGAGATACTATA Found at i:80068304 original size:40 final size:40 Alignment explanation
Indices: 80068107--80068290 Score: 216 Period size: 40 Copynumber: 4.6 Consensus size: 40 80068097 TGAATGATGT * * * * 80068107 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT 1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA * * * 80068147 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT 1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A 80068187 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA 1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA * 80068225 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA 1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA * 80068266 CCGGGCTATGTCCCGAAGGCATTTG 1 CCGGGCTAAGTCCCGAAGGCATTTG 80068291 AACGAGTAGC Statistics Matches: 126, Mismatches: 11, Indels: 14 0.83 0.07 0.09 Matches are distributed among these distances: 39 35 0.28 40 81 0.64 41 10 0.08 ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25 Consensus pattern (40 bp): CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA Found at i:80068312 original size:79 final size:79 Alignment explanation
Indices: 80068159--80068323 Score: 210 Period size: 79 Copynumber: 2.1 Consensus size: 79 80068149 GGACTAAGAT * ** 80068159 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA 1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA * 80068224 ATCCGGGTTAAGTC 66 ATCCGGGTTAAATC * * 80068238 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC 1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C * * 80068301 TATATCC-GGTTAAATT 63 TAAATCCGGGTTAAATC 80068317 CCGAAGG 1 CCGAAGG 80068324 TACGTGATTT Statistics Matches: 75, Mismatches: 8, Indels: 6 0.84 0.09 0.07 Matches are distributed among these distances: 78 2 0.03 79 48 0.64 80 25 0.33 ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25 Consensus pattern (79 bp): CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA ATCCGGGTTAAATC Found at i:80076159 original size:32 final size:33 Alignment explanation
Indices: 80076080--80076218 Score: 127 Period size: 32 Copynumber: 3.8 Consensus size: 33 80076070 AGATCCGAAG 80076080 GCATTTGTGCGAGATACTAATTCCGGGCTAAGCCGAA 1 GCATTTGTGCGAG-TACTAA-TCCGGGCTAAGCC--A 80076117 GGCATTTGTGCGAGTACTAATCCGGGCTAAGCC- 1 -GCATTTGTGCGAGTACTAATCCGGGCTAAGCCA * * 80076150 GCATTTGTGCGATTACTAAATCCGGGTTAAGTCCCGAA 1 GCATTTGTGCGAGTACT-AATCCGGGCTAAG--CC--A * 80076188 GGCATTTGTGCGAGTTACTATAACCGGGCTA 1 -GCATTTGTGCGAG-TACTA-ATCCGGGCTA 80076219 TGTCCCGAAG Statistics Matches: 87, Mismatches: 5, Indels: 16 0.81 0.05 0.15 Matches are distributed among these distances: 32 16 0.18 33 12 0.14 35 2 0.02 36 13 0.15 37 6 0.07 38 13 0.15 39 13 0.15 40 12 0.14 ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27 Consensus pattern (33 bp): GCATTTGTGCGAGTACTAATCCGGGCTAAGCCA Found at i:80076194 original size:71 final size:72 Alignment explanation
Indices: 80076080--80076218 Score: 203 Period size: 71 Copynumber: 1.9 Consensus size: 72 80076070 AGATCCGAAG * * 80076080 GCATTTGTGCGAGATACTAATTCCGGGCTAAGCCGAAGGCATTTGTGCGAG-TACTA-ATCCGGG 1 GCATTTGTGCGAGATACTAAATCCGGGCTAAGCCGAAGGCATTTGTGCGAGTTACTATAACCGGG 80076143 CTAAGCC 66 CTAAGCC * * 80076150 GCATTTGTGCGA-TTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG 1 GCATTTGTGCGAGATACTAAATCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTATAACCG 80076214 GGCTA 64 GGCTA 80076219 TGTCCCGAAG Statistics Matches: 61, Mismatches: 4, Indels: 5 0.87 0.06 0.07 Matches are distributed among these distances: 69 16 0.26 70 12 0.20 71 19 0.31 72 5 0.08 73 9 0.15 ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27 Consensus pattern (72 bp): GCATTTGTGCGAGATACTAAATCCGGGCTAAGCCGAAGGCATTTGTGCGAGTTACTATAACCGGG CTAAGCC Found at i:80076224 original size:40 final size:39 Alignment explanation
Indices: 80076022--80076235 Score: 193 Period size: 40 Copynumber: 5.7 Consensus size: 39 80076012 TTGAATGATG * * * * 80076022 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACCATA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GA-TTACTAAA * * * 80076061 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT 1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-TTACTAAA * 80076101 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTACT-AA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTACTAAA 80076137 TCCGGGCTAAG--CC----GCATTTGTGCGATTACTAAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTACTAAA * 80076170 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA 1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-TTACTA-AA * 80076211 -CCGGGCTATGTCCCGAAGGCATTTG 1 TCCGGGCTAAGTCCCGAAGGCATTTG 80076236 AACGAGTAGC Statistics Matches: 150, Mismatches: 14, Indels: 21 0.81 0.08 0.11 Matches are distributed among these distances: 32 16 0.11 33 12 0.08 35 2 0.01 36 14 0.09 37 4 0.03 38 18 0.12 39 22 0.15 40 53 0.35 41 9 0.06 ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26 Consensus pattern (39 bp): TCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTACTAAA Found at i:80081757 original size:25 final size:25 Alignment explanation
Indices: 80081729--80081777 Score: 62 Period size: 25 Copynumber: 2.0 Consensus size: 25 80081719 CCAGAGGACC * * 80081729 AATCATATAACTCATGATAATGATT 1 AATCACATAACTCATCATAATGATT * * 80081754 AATCACATAATTCTTCATAATGAT 1 AATCACATAACTCATCATAATGAT 80081778 AATAATAAAG Statistics Matches: 20, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 25 20 1.00 ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37 Consensus pattern (25 bp): AATCACATAACTCATCATAATGATT Found at i:80084401 original size:25 final size:25 Alignment explanation
Indices: 80084373--80084439 Score: 93 Period size: 25 Copynumber: 2.8 Consensus size: 25 80084363 GTTCCGACCC * 80084373 ACAGCTCGTGTGAGCATACTGATTT 1 ACAGCTCGTGTGAGCATACCGATTT * * 80084398 ACAGCTCGTGTAAACATACCGATTT 1 ACAGCTCGTGTGAGCATACCGATTT 80084423 ACAGCTC--GTGAGCATAC 1 ACAGCTCGTGTGAGCATAC 80084440 ATGTACAAGA Statistics Matches: 37, Mismatches: 5, Indels: 2 0.84 0.11 0.05 Matches are distributed among these distances: 23 8 0.22 25 29 0.78 ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27 Consensus pattern (25 bp): ACAGCTCGTGTGAGCATACCGATTT Found at i:80085956 original size:19 final size:19 Alignment explanation
Indices: 80085932--80085971 Score: 64 Period size: 19 Copynumber: 2.1 Consensus size: 19 80085922 AAACAGGGTC 80085932 ACACGCCCGTGTGCC-CAGG 1 ACACGCCCGTGT-CCTCAGG 80085951 ACACGCCCGTGTCCTCAGG 1 ACACGCCCGTGTCCTCAGG 80085970 AC 1 AC 80085972 GTGTAACTCT Statistics Matches: 20, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 18 2 0.10 19 18 0.90 ACGTcount: A:0.17, C:0.42, G:0.28, T:0.12 Consensus pattern (19 bp): ACACGCCCGTGTCCTCAGG Found at i:80086658 original size:14 final size:14 Alignment explanation
Indices: 80086635--80086673 Score: 60 Period size: 14 Copynumber: 2.8 Consensus size: 14 80086625 TTGTTCCACT 80086635 GAAAATGATTTTCG 1 GAAAATGATTTTCG * * 80086649 GAAAAAGATTTTTG 1 GAAAATGATTTTCG 80086663 GAAAATGATTT 1 GAAAATGATTT 80086674 ACTTTTCTGG Statistics Matches: 22, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 14 22 1.00 ACGTcount: A:0.41, C:0.03, G:0.21, T:0.36 Consensus pattern (14 bp): GAAAATGATTTTCG Found at i:80087148 original size:15 final size:15 Alignment explanation
Indices: 80087128--80087179 Score: 50 Period size: 15 Copynumber: 3.2 Consensus size: 15 80087118 ACTACAAAAC 80087128 ATTTATTATTAATAT 1 ATTTATTATTAATAT * 80087143 ATTTATAATTGTAATAAAT 1 ATTTATTA-T-TAAT--AT * 80087162 ATTTATTATTAACAT 1 ATTTATTATTAATAT 80087177 ATT 1 ATT 80087180 CAATATTGAA Statistics Matches: 30, Mismatches: 3, Indels: 8 0.73 0.07 0.20 Matches are distributed among these distances: 15 12 0.40 16 1 0.03 17 7 0.23 18 1 0.03 19 9 0.30 ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54 Consensus pattern (15 bp): ATTTATTATTAATAT Found at i:80087244 original size:16 final size:16 Alignment explanation
Indices: 80087213--80087249 Score: 58 Period size: 16 Copynumber: 2.3 Consensus size: 16 80087203 ATGTCAATAA 80087213 TATTATTTAAAATTAT 1 TATTATTTAAAATTAT 80087229 TATT-TTTAAAATTTAT 1 TATTATTTAAAA-TTAT 80087245 TATTA 1 TATTA 80087250 AAATAAAATT Statistics Matches: 19, Mismatches: 0, Indels: 3 0.86 0.00 0.14 Matches are distributed among these distances: 15 7 0.37 16 12 0.63 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (16 bp): TATTATTTAAAATTAT Found at i:80087301 original size:22 final size:22 Alignment explanation
Indices: 80087261--80087316 Score: 62 Period size: 22 Copynumber: 2.6 Consensus size: 22 80087251 AATAAAATTG * 80087261 AAATATTAAA-TA-ATTTATTA 1 AAATAATAAATTATATTTATTA 80087281 AAATAATAAATTATATTTATTA 1 AAATAATAAATTATATTTATTA * * * 80087303 TATTAATAATTTAT 1 AAATAATAAATTAT 80087317 TATAAGACTA Statistics Matches: 30, Mismatches: 4, Indels: 2 0.83 0.11 0.06 Matches are distributed among these distances: 20 9 0.30 21 2 0.07 22 19 0.63 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (22 bp): AAATAATAAATTATATTTATTA Found at i:80088721 original size:49 final size:48 Alignment explanation
Indices: 80088661--80088830 Score: 156 Period size: 49 Copynumber: 3.6 Consensus size: 48 80088651 CATTAAAGTT * 80088661 AATGTCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCC 1 AATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATA-CGAGGCC * * * * 80088710 AATGCCATGTCCCAGACAGGTCTTACACTGAC--ACACA-AC-AAGCT 1 AATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATACGAGGCC * * * 80088754 GACGCCATGTCCCAGACAGGTCTTACACT-AGCTTGT-ATATCCCGAGGCC 1 AATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATAT-ACGAGGCC * * * 80088803 GATG-TATGTCCCAGACATGTCTTACACT 1 AATGCCATGTCCCAGACAGGTCTTACACT 80088831 AGCTCTCGTC Statistics Matches: 99, Mismatches: 15, Indels: 15 0.77 0.12 0.12 Matches are distributed among these distances: 43 1 0.01 44 31 0.31 45 1 0.01 46 3 0.03 47 3 0.03 48 23 0.23 49 37 0.37 ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25 Consensus pattern (48 bp): AATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATACGAGGCC Found at i:80088910 original size:58 final size:57 Alignment explanation
Indices: 80088802--80088938 Score: 152 Period size: 58 Copynumber: 2.6 Consensus size: 57 80088792 ATCCCGAGGC * * 80088802 CGATGTATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTCGATGCATGTTT 1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAATGTCGATGCATGTTT * * 80088860 CGATGCATGTCCCAGACATTTCTTACACTGGCTCTC-AT-AATGT-G--GC------ 1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAATGTCGATGCATGTTT 80088906 CGATGCATGTCCCAGACATGTCTTACACTAGCT 1 CGATGCATGTCCCAGACATGTCTTACACTAGCT 80088939 TACATACCAC Statistics Matches: 73, Mismatches: 6, Indels: 12 0.80 0.07 0.13 Matches are distributed among these distances: 46 31 0.42 52 2 0.03 54 1 0.01 55 5 0.07 56 1 0.01 58 33 0.45 ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31 Consensus pattern (57 bp): CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAATGTCGATGCATGTTT Found at i:80090630 original size:39 final size:39 Alignment explanation
Indices: 80090485--80090706 Score: 245 Period size: 40 Copynumber: 5.6 Consensus size: 39 80090475 GCTACTCGTT * * 80090485 CAAATGCCTTCGGGACATAGCCCGGTTATT-GTAACTCGCA 1 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA * * * 80090525 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA * 80090565 CAAATGCCTTC-GGCTTAGCCCGGAATTAGTATCTCGCA 1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA * 80090603 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA 1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA * * * * * 80090642 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA 1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA * 80090683 CAAA-GCCTTCGGACTTAGCCCGGA 1 CAAATGCCTTCGGGCTTAGCCCGGA 80090707 CATCATTCAA Statistics Matches: 159, Mismatches: 17, Indels: 12 0.85 0.09 0.06 Matches are distributed among these distances: 38 33 0.21 39 55 0.35 40 63 0.40 41 8 0.05 ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26 Consensus pattern (39 bp): CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA Found at i:80090691 original size:117 final size:119 Alignment explanation
Indices: 80090485--80090706 Score: 292 Period size: 117 Copynumber: 1.9 Consensus size: 119 80090475 GCTACTCGTT * * 80090485 CAAATGCCTTCGGGACATAGCCCGGTTATTGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG 1 CAAATGCCTTCGGGACATAGCCCGGTAATTGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG * * 80090550 ATTTAGTAACTCGCACAAATGCCTTCGG-CTTAGCCCGGAATTAGTATCTCGCA 66 ATATAGTAACTAGCACAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA * * ** 80090603 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC 1 CAAATGCCTTCGGGACATAGCCCGGTAATT-GTAACTCGCACAAATGCCTTCGGGA-CTTAACCC * * 80090665 GGATATGGTCACTTAGCACAAA-GCCTTCGGACTTAGCCCGGA 64 GGATATAGTAAC-TAGCACAAATGCCTTCGGACTTAGCCCGGA 80090707 CATCATTCAA Statistics Matches: 90, Mismatches: 10, Indels: 8 0.83 0.09 0.07 Matches are distributed among these distances: 116 6 0.07 117 51 0.57 118 33 0.37 ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26 Consensus pattern (119 bp): CAAATGCCTTCGGGACATAGCCCGGTAATTGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG ATATAGTAACTAGCACAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA Found at i:80098611 original size:39 final size:40 Alignment explanation
Indices: 80098488--80098711 Score: 253 Period size: 40 Copynumber: 5.7 Consensus size: 40 80098478 GCTACTCGTT * * 80098488 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA * * * 80098528 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA * * * 80098568 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCT 1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA * 80098607 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA 1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA * * * * 80098646 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA 1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA 80098687 CAAA-GCCTTCGGGACTTAGCCCGGA 1 CAAATGCCTTCGGGACTTAGCCCGGA 80098712 CATCATTCAA Statistics Matches: 160, Mismatches: 17, Indels: 13 0.84 0.09 0.07 Matches are distributed among these distances: 38 2 0.01 39 70 0.44 40 75 0.47 41 13 0.08 ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25 Consensus pattern (40 bp): CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA Found at i:80098654 original size:78 final size:80 Alignment explanation
Indices: 80098488--80098711 Score: 242 Period size: 79 Copynumber: 2.8 Consensus size: 80 80098478 GCTACTCGTT ** * 80098488 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG 1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG * 80098553 ATTTAGTAACTCGCA 66 AATTAGTAACTCGCA * * * * 80098568 CAAATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCTCAAATGCCTTCGGG-CTTAGCCCG 1 CAAATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG * 80098630 GAATTAGTATCTCGCA 65 GAATTAGTAACTCGCA * * * * * * * 80098646 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC 1 CAAATGCCTTCGGGA-CATAGCCCGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC 80098709 GGA 64 GGA 80098712 CATCATTCAA Statistics Matches: 122, Mismatches: 16, Indels: 12 0.81 0.11 0.08 Matches are distributed among these distances: 77 2 0.02 78 34 0.28 79 53 0.43 80 33 0.27 ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25 Consensus pattern (80 bp): CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG AATTAGTAACTCGCA Found at i:80098671 original size:118 final size:120 Alignment explanation
Indices: 80098482--80098709 Score: 295 Period size: 118 Copynumber: 1.9 Consensus size: 120 80098472 GATATAGCTA * * * 80098482 CTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTA 1 CTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA * * 80098547 ACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGAAATTAGTAT 66 ACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGAAATTAGTAT * * 80098601 CTCGCTCAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCT 1 CTCGCTCAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CT ** * * 80098663 TAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG 64 TAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCG 80098710 GACATCATTC Statistics Matches: 94, Mismatches: 11, Indels: 8 0.83 0.10 0.07 Matches are distributed among these distances: 117 4 0.04 118 54 0.57 119 36 0.38 ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26 Consensus pattern (120 bp): CTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA ACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGAAATTAGTAT Found at i:80100933 original size:20 final size:18 Alignment explanation
Indices: 80100896--80100946 Score: 59 Period size: 20 Copynumber: 2.7 Consensus size: 18 80100886 CTATAGCAAC 80100896 TCACAATTT-CAATTATT 1 TCACAATTTACAATTATT 80100913 TCACACATTTACAACTTATT 1 TCACA-ATTTACAA-TTATT * 80100933 TTACAACTTTACAA 1 TCACAA-TTTACAA 80100947 AATAGCCCTT Statistics Matches: 29, Mismatches: 1, Indels: 5 0.83 0.03 0.14 Matches are distributed among these distances: 17 5 0.17 18 4 0.14 19 4 0.14 20 16 0.55 ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41 Consensus pattern (18 bp): TCACAATTTACAATTATT Found at i:80103326 original size:35 final size:35 Alignment explanation
Indices: 80103220--80103452 Score: 252 Period size: 35 Copynumber: 6.6 Consensus size: 35 80103210 CACATCGTAG * * * 80103220 GTCCAACC-ATAACACATCAGATGCTCATACGAGCAA 1 GTCCAACCGA-AACACACCA-ATGCTCATAAGAGCTA * ** * * * * 80103256 ATCCTTCCAAAACACATCAAATGCTCACAAAAGCTA 1 GTCCAACCGAAACACA-CCAATGCTCATAAGAGCTA * 80103292 GTCCAACCGTAACACACCAATGCTCATAAGAGCTA 1 GTCCAACCGAAACACACCAATGCTCATAAGAGCTA ** * * * 80103327 GTCCAATTGAAACACGCCAATGCTCACAAAAGCTA 1 GTCCAACCGAAACACACCAATGCTCATAAGAGCTA * 80103362 GTCCAACCGTAACACACCAATGCTCATAAGAGCTA 1 GTCCAACCGAAACACACCAATGCTCATAAGAGCTA ** * 80103397 GTCCAATTGAAACACGCCAATGCTCATAAGAGCTA 1 GTCCAACCGAAACACACCAATGCTCATAAGAGCTA 80103432 GTCCAACCGAAACACACCAAT 1 GTCCAACCGAAACACACCAAT 80103453 AGAGAGTATA Statistics Matches: 159, Mismatches: 36, Indels: 5 0.80 0.18 0.03 Matches are distributed among these distances: 35 123 0.77 36 34 0.21 37 2 0.01 ACGTcount: A:0.39, C:0.30, G:0.13, T:0.17 Consensus pattern (35 bp): GTCCAACCGAAACACACCAATGCTCATAAGAGCTA Found at i:80103359 original size:70 final size:70 Alignment explanation
Indices: 80103275--80103452 Score: 329 Period size: 70 Copynumber: 2.5 Consensus size: 70 80103265 AAACACATCA 80103275 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC 1 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC 80103340 ACGCC 66 ACGCC 80103345 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC 1 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC 80103410 ACGCC 66 ACGCC * * * 80103415 AATGCTCATAAGAGCTAGTCCAACCGAAACACACCAAT 1 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAAT 80103453 AGAGAGTATA Statistics Matches: 105, Mismatches: 3, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 70 105 1.00 ACGTcount: A:0.39, C:0.30, G:0.14, T:0.17 Consensus pattern (70 bp): AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC ACGCC Found at i:80115328 original size:63 final size:62 Alignment explanation
Indices: 80115229--80115346 Score: 218 Period size: 63 Copynumber: 1.9 Consensus size: 62 80115219 TCAGGAGTCT 80115229 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAATTGATA 1 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGG-AAAAATTAGTCATCAATAAAATAATTGATA * 80115292 CAACTCCAGTGGGGGTACTGAAGTCAAAAGGGAAAAATTAGTCATCAATAAAATA 1 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAATTAGTCATCAATAAAATA 80115347 GTTAATACTC Statistics Matches: 54, Mismatches: 1, Indels: 1 0.96 0.02 0.02 Matches are distributed among these distances: 62 23 0.43 63 31 0.57 ACGTcount: A:0.45, C:0.14, G:0.20, T:0.21 Consensus pattern (62 bp): CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAATTAGTCATCAATAAAATAATTGATA Found at i:80115554 original size:6 final size:6 Alignment explanation
Indices: 80115543--80115596 Score: 63 Period size: 6 Copynumber: 8.5 Consensus size: 6 80115533 CTTCAATCTG * * 80115543 CTCTTC CTCTTC CTCTTC CTCTTC TTCTTCTTC CTCCTC CTCCTC CTCTTC 1 CTCTTC CTCTTC CTCTTC CTCTTC --C-TCTTC CTCTTC CTCTTC CTCTTC 80115594 CTC 1 CTC 80115597 CAAATCACCC Statistics Matches: 43, Mismatches: 2, Indels: 6 0.84 0.04 0.12 Matches are distributed among these distances: 6 36 0.84 7 1 0.02 8 1 0.02 9 5 0.12 ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48 Consensus pattern (6 bp): CTCTTC Found at i:80115574 original size:15 final size:15 Alignment explanation
Indices: 80115544--80115596 Score: 52 Period size: 15 Copynumber: 3.5 Consensus size: 15 80115534 TTCAATCTGC 80115544 TCTTCCTCTTCCTCT 1 TCTTCCTCTTCCTCT * * * 80115559 TCCTCTTCTTCTTCT 1 TCTTCCTCTTCCTCT * * * 80115574 TCCTCCTCCTCCTCC 1 TCTTCCTCTTCCTCT 80115589 TCTTCCTC 1 TCTTCCTC 80115597 CAAATCACCC Statistics Matches: 30, Mismatches: 8, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 15 30 1.00 ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49 Consensus pattern (15 bp): TCTTCCTCTTCCTCT Found at i:80121886 original size:17 final size:17 Alignment explanation
Indices: 80121866--80121900 Score: 54 Period size: 17 Copynumber: 2.1 Consensus size: 17 80121856 CATAAAATTA 80121866 AATTAAAA-ATAATTAAT 1 AATTAAAATATAA-TAAT 80121883 AATTAAAATATAATAAT 1 AATTAAAATATAATAAT 80121900 A 1 A 80121901 TCTAACAACA Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 17 13 0.76 18 4 0.24 ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34 Consensus pattern (17 bp): AATTAAAATATAATAAT Found at i:80125211 original size:12 final size:12 Alignment explanation
Indices: 80125194--80125220 Score: 54 Period size: 12 Copynumber: 2.2 Consensus size: 12 80125184 AGAGAAATCC 80125194 CGGTTGAACTTT 1 CGGTTGAACTTT 80125206 CGGTTGAACTTT 1 CGGTTGAACTTT 80125218 CGG 1 CGG 80125221 AAGATTGAAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 15 1.00 ACGTcount: A:0.15, C:0.19, G:0.30, T:0.37 Consensus pattern (12 bp): CGGTTGAACTTT Found at i:80138941 original size:25 final size:25 Alignment explanation
Indices: 80138904--80138952 Score: 89 Period size: 25 Copynumber: 2.0 Consensus size: 25 80138894 ATAACACTTC 80138904 ACATACTTATGTTGTTACAAGAATT 1 ACATACTTATGTTGTTACAAGAATT * 80138929 ACATACTTGTGTTGTTACAAGAAT 1 ACATACTTATGTTGTTACAAGAAT 80138953 AATGGTGCAT Statistics Matches: 23, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 25 23 1.00 ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39 Consensus pattern (25 bp): ACATACTTATGTTGTTACAAGAATT Found at i:80142653 original size:97 final size:94 Alignment explanation
Indices: 80142478--80142655 Score: 234 Period size: 97 Copynumber: 1.9 Consensus size: 94 80142468 CATTTGTGCG * * 80142478 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATATTATGAGAGCCAATGTAAGACCATGTCT 1 CTAGTGCAAGACATGTCTGGGACATGCATCGGCGATATTATGAGAGCCAATGTAAGACCATGTCT * 80142543 AGGACATGGCGTCGACATTGAAAAGAGAA 66 AGGACATGACGTCGACATTGAAAAGAGAA * * * 80142572 CTAGTGCAAGACATGTCTGGGACATGGCATCGGCACGGATA-TGTGAGAGCTAGTGTAAGACCAT 1 CTAGTGCAAGACATGTCTGGGACAT-GCATCGG--C-GATATTATGAGAGCCAATGTAAGACCAT * 80142636 GTCT-GAGATATGACGTCGAC 62 GTCTAG-GACATGACGTCGAC 80142656 CTCGATTTCG Statistics Matches: 72, Mismatches: 7, Indels: 7 0.84 0.08 0.08 Matches are distributed among these distances: 94 24 0.33 95 7 0.10 96 1 0.01 97 37 0.51 98 3 0.04 ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23 Consensus pattern (94 bp): CTAGTGCAAGACATGTCTGGGACATGCATCGGCGATATTATGAGAGCCAATGTAAGACCATGTCT AGGACATGACGTCGACATTGAAAAGAGAA Found at i:80148239 original size:46 final size:45 Alignment explanation
Indices: 80148187--80148491 Score: 382 Period size: 46 Copynumber: 6.6 Consensus size: 45 80148177 GCTCTCTGAA * * * 80148187 ATGAAATATGTAAGACCATGGTTGAATGATACCATTGCAACATGAT 1 ATGAAATA-GTAAGACCATGGTTGAAAGATACCATGGCAACATGAC * 80148233 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC 1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC * 80148279 ATGAAA-AGAATAAGGCCATGGTTGAAAGATACCATGGCAACATGAC 1 ATGAAATAG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAC ** * * * 80148325 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC 1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC * * 80148371 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAACATGAC 1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC 80148417 ATGAAA-AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC 1 ATGAAATAG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAC * 80148463 A-GAAAATGAGTAAGACCATAGTTGAAAGA 1 ATG-AAAT-AGTAAGACCATGGTTGAAAGA 80148492 CACTATGACA Statistics Matches: 229, Mismatches: 20, Indels: 20 0.85 0.07 0.07 Matches are distributed among these distances: 44 2 0.01 45 1 0.00 46 223 0.97 48 3 0.01 ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20 Consensus pattern (45 bp): ATGAAATAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC Found at i:80148344 original size:92 final size:92 Alignment explanation
Indices: 80148197--80148491 Score: 439 Period size: 92 Copynumber: 3.2 Consensus size: 92 80148187 ATGAAATATG * * * ** 80148197 TAAGACCATGGTTGAATGATACCATTGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA 1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA 80148262 TACCATGGCAACATGACATGAAAAGAA 66 TACCATGGCAACATGACATGAAAAGAA * ** 80148289 TAAGGCCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGA 1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA * * * 80148354 TACCATGGCAGCGTGACATGAAATGAA 66 TACCATGGCAACATGACATGAAAAGAA * * 80148381 TAAGACCATGGTTGAAAGATACCATGGTAACATGACATGAAAAGAATAAGACCATGGTTGAAAGA 1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA * 80148446 TACCATGGCAACATGACA-GAAAATGAG 66 TACCATGGCAACATGACATGAAAA-GAA * 80148473 TAAGACCATAGTTGAAAGA 1 TAAGACCATGGTTGAAAGA 80148492 CACTATGACA Statistics Matches: 181, Mismatches: 21, Indels: 2 0.89 0.10 0.01 Matches are distributed among these distances: 91 4 0.02 92 177 0.98 ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20 Consensus pattern (92 bp): TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA TACCATGGCAACATGACATGAAAAGAA Found at i:80148437 original size:138 final size:138 Alignment explanation
Indices: 80148197--80148491 Score: 473 Period size: 138 Copynumber: 2.1 Consensus size: 138 80148187 ATGAAATATG * * * ** 80148197 TAAGACCATGGTTGAATGATACCATTGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA 1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA * * 80148262 TACCATGGCAACATGACATGAAAAGAATAAGGCCATGGTTGAAAGATACCATGGCAACATGACGG 66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG * 80148327 GAAATGAA 131 AAAATGAA * * 80148335 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA 1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA * 80148400 TACCATGGTAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG 66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG * 80148465 AAAATGAG 131 AAAATGAA * 80148473 TAAGACCATAGTTGAAAGA 1 TAAGACCATGGTTGAAAGA 80148492 CACTATGACA Statistics Matches: 144, Mismatches: 13, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 138 144 1.00 ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20 Consensus pattern (138 bp): TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG AAAATGAA Found at i:80152441 original size:21 final size:21 Alignment explanation
Indices: 80152411--80152461 Score: 61 Period size: 20 Copynumber: 2.5 Consensus size: 21 80152401 AAAGATAATA 80152411 AGTATCGATACTTTT-TAAATG 1 AGTATCGATA-TTTTCTAAATG * * 80152432 AGTATTGATATTTTCTAAA-A 1 AGTATCGATATTTTCTAAATG 80152452 AGTATCGATA 1 AGTATCGATA 80152462 AAATAGTACC Statistics Matches: 26, Mismatches: 3, Indels: 3 0.81 0.09 0.09 Matches are distributed among these distances: 20 13 0.50 21 13 0.50 ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41 Consensus pattern (21 bp): AGTATCGATATTTTCTAAATG Found at i:80152455 original size:20 final size:21 Alignment explanation
Indices: 80152407--80152461 Score: 69 Period size: 21 Copynumber: 2.7 Consensus size: 21 80152397 TTAAAAAGAT 80152407 AATAAGTATCGATACTTTTTA 1 AATAAGTATCGATACTTTTTA * * 80152428 AATGAGTATTGATA-TTTTCTA 1 AATAAGTATCGATACTTTT-TA 80152449 AA-AAGTATCGATA 1 AATAAGTATCGATA 80152462 AAATAGTACC Statistics Matches: 29, Mismatches: 4, Indels: 3 0.81 0.11 0.08 Matches are distributed among these distances: 20 13 0.45 21 16 0.55 ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40 Consensus pattern (21 bp): AATAAGTATCGATACTTTTTA Found at i:80152727 original size:20 final size:20 Alignment explanation
Indices: 80152683--80152727 Score: 56 Period size: 20 Copynumber: 2.2 Consensus size: 20 80152673 AGGCATTCAA 80152683 CAAAAATTAGACAAAATAAG 1 CAAAAATTAGACAAAATAAG * * 80152703 TAAAAATTAGAC-TAATAATG 1 CAAAAATTAGACAAAATAA-G 80152723 CAAAA 1 CAAAA 80152728 TCAACTGCCC Statistics Matches: 21, Mismatches: 3, Indels: 2 0.81 0.12 0.08 Matches are distributed among these distances: 19 5 0.24 20 16 0.76 ACGTcount: A:0.62, C:0.09, G:0.09, T:0.20 Consensus pattern (20 bp): CAAAAATTAGACAAAATAAG Found at i:80155317 original size:6 final size:6 Alignment explanation
Indices: 80155297--80155330 Score: 50 Period size: 6 Copynumber: 5.5 Consensus size: 6 80155287 ATGTGCCGAA * 80155297 TACTGT TACTGGT TACTGT TACCGT TACTGT TAC 1 TACTGT TACT-GT TACTGT TACTGT TACTGT TAC 80155331 CGATTTGGCA Statistics Matches: 25, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 6 19 0.76 7 6 0.24 ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44 Consensus pattern (6 bp): TACTGT Found at i:80155597 original size:17 final size:19 Alignment explanation
Indices: 80155554--80155604 Score: 70 Period size: 18 Copynumber: 2.8 Consensus size: 19 80155544 AAAGATCGAC 80155554 TGTTACTGAATAATTTAAT 1 TGTTACTGAATAATTTAAT * * 80155573 TGTTACTGTAT-ATTTGAT 1 TGTTACTGAATAATTTAAT 80155591 T-TTACTGAATAATT 1 TGTTACTGAATAATT 80155605 GACTGCTACT Statistics Matches: 28, Mismatches: 3, Indels: 3 0.82 0.09 0.09 Matches are distributed among these distances: 17 8 0.29 18 10 0.36 19 10 0.36 ACGTcount: A:0.31, C:0.06, G:0.12, T:0.51 Consensus pattern (19 bp): TGTTACTGAATAATTTAAT Found at i:80155606 original size:17 final size:18 Alignment explanation
Indices: 80155554--80155606 Score: 63 Period size: 17 Copynumber: 2.9 Consensus size: 18 80155544 AAAGATCGAC * 80155554 TGTTACTGAATAATTTAAT 1 TGTTACTGAATAA-TTGAT * * 80155573 TGTTACTGTATATTTGAT 1 TGTTACTGAATAATTGAT 80155591 T-TTACTGAATAATTGA 1 TGTTACTGAATAATTGA 80155607 CTGCTACTAG Statistics Matches: 29, Mismatches: 5, Indels: 2 0.81 0.14 0.06 Matches are distributed among these distances: 17 13 0.45 18 5 0.17 19 11 0.38 ACGTcount: A:0.32, C:0.06, G:0.13, T:0.49 Consensus pattern (18 bp): TGTTACTGAATAATTGAT Done.