Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 235 of 345
Found at i:79844854 original size:65 final size:65
Alignment explanation
Indices: 79844773--79844899 Score: 191
Period size: 65 Copynumber: 2.0 Consensus size: 65
79844763 TTGAAGATAA
*
79844773 CAGATCTGACATTCGTGAGTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCTATAG
1 CAGATCTGACATTCGTGAGTTTACATCAAAGAAGATCGAAGACGACAAACTTGGCGTCTCTATAG
* * * * * *
79844838 CAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCTA
1 CAGATCTGACATTCGTGAGTTTACATCAAAGAAGATCGAAGACGACAAACTTGGCGTCTCTA
79844900 AATTAGACGG
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (65 bp):
CAGATCTGACATTCGTGAGTTTACATCAAAGAAGATCGAAGACGACAAACTTGGCGTCTCTATAG
Found at i:79844964 original size:155 final size:155
Alignment explanation
Indices: 79844679--79844988 Score: 476
Period size: 155 Copynumber: 2.0 Consensus size: 155
79844669 CAGATCGAAG
* *
79844679 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGATAGATTTGGCGTCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT
** * *
79844744 GTATTAGACGAGGAGCAGATTGAAGATAACAGATCTGACATTCGTGAGTTTACATCAAAGAAGAT
66 AAATTAGACGAGGAGCAGATCGAAGATAACAGATCTAACATTCGTGAGTTTACATCAAAGAAGAT
79844809 CGAAGACGACAGACTTGGCGTCTCT
131 CGAAGACGACAGACTTGGCGTCTCT
*
79844834 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT
* * * * * *
79844899 AAATTAGACGGGGAGCAGATCGAAGATAGCAGATCTAACATTTGTGTGTTTACATCGAAGTAGAT
66 AAATTAGACGAGGAGCAGATCGAAGATAACAGATCTAACATTCGTGAGTTTACATCAAAGAAGAT
* * *
79844964 CGAAGATGATAGATTTGGCGTCTCT
131 CGAAGACGACAGACTTGGCGTCTCT
79844989 GAATTAGACG
Statistics
Matches: 139, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
155 139 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (155 bp):
ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT
AAATTAGACGAGGAGCAGATCGAAGATAACAGATCTAACATTCGTGAGTTTACATCAAAGAAGAT
CGAAGACGACAGACTTGGCGTCTCT
Found at i:79844987 original size:90 final size:90
Alignment explanation
Indices: 79844834--79845142 Score: 510
Period size: 90 Copynumber: 3.4 Consensus size: 90
79844824 TGGCGTCTCT
* *
79844834 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT
79844899 AAATTAGACGGGGAGCAGATCGAAG
66 AAATTAGACGGGGAGCAGATCGAAG
* * * *
79844924 ATAGCAGATCTAACATTTGTGTGTTTACATCGAAGTAGATCGAAGATGATAGATTTGGCGTCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT
* *
79844989 GAATTAGACGAGGAGCAGATCGAAG
66 AAATTAGACGGGGAGCAGATCGAAG
*
79845014 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT
* *
79845079 ATATTAGACGGGGAGCAGATCAAAG
66 AAATTAGACGGGGAGCAGATCGAAG
*
79845104 ATAGCAGATCTGACATTCGTGTGTTTACATCAAAGCAGA
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGA
79845143 CAGATTTGGC
Statistics
Matches: 200, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 200 1.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27
Consensus pattern (90 bp):
ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT
AAATTAGACGGGGAGCAGATCGAAG
Found at i:79845024 original size:245 final size:244
Alignment explanation
Indices: 79844590--79845081 Score: 806
Period size: 245 Copynumber: 2.0 Consensus size: 244
79844580 CAGATCGAAG
* *
79844590 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAGATTTGGCGTCTCTG
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAAATTTGGCGTCTCTA
* * * *
79844655 TATTATATGGAGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATC
66 AATTAGACGGAGAGCAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATC
* *
79844720 GAAGATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATTGAAGATAACAGATCTGACAT
131 GAAGATGATAGATTTGGCGTCTCTGAATTAGACGAGGAGCAGATCGAAGATAACAGATCTGACAT
79844785 TCGTGA-GTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCT
196 TCGT-ATGTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCT
*
79844834 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAAATTTGGCGTCTCT
1 ATAGCAGATCTGACATTCGTGTGTTTACATCGAAG-AGATCGAAGATGACAAATTTGGCGTCTCT
* * *
79844899 AAATTAGACGGGGAGCAGATCGAAGATAGCAGATCTAACATTTGTGTGTTTACATCGAAGTAGAT
65 AAATTAGACGGAGAGCAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGAT
*
79844964 CGAAGATGATAGATTTGGCGTCTCTGAATTAGACGAGGAGCAGATCGAAGATAGCAGATCTGACA
130 CGAAGATGATAGATTTGGCGTCTCTGAATTAGACGAGGAGCAGATCGAAGATAACAGATCTGACA
* * * *
79845029 TTCGTATGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCGTCTCT
195 TTCGTATGTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCT
79845079 ATA
1 ATA
79845082 TTAGACGGGG
Statistics
Matches: 229, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
244 35 0.15
245 194 0.85
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27
Consensus pattern (244 bp):
ATAGCAGATCTGACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAAATTTGGCGTCTCTA
AATTAGACGGAGAGCAGATCGAAGATAGCAGATCTAACATTCGTGTGTTTACATCGAAGCAGATC
GAAGATGATAGATTTGGCGTCTCTGAATTAGACGAGGAGCAGATCGAAGATAACAGATCTGACAT
TCGTATGTTTACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCT
Found at i:79845029 original size:335 final size:333
Alignment explanation
Indices: 79844534--79845138 Score: 996
Period size: 335 Copynumber: 1.8 Consensus size: 333
79844524 ATTGACAGGG
* **
79844534 AGCAGATCGAAGAAGCAGATTTGGAGTCTCTGTATTAGACGGAGAGCAGATCGAAGATAGCAGAT
1 AGCAGATCGAAGAAGCAAATTTGGAGTCTCTAAATTAGACGGAGAGCAGATCGAAGATAGCAGAT
* * * *
79844599 CTGACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAGATTTGGCGTCTCTGTATTATATG
66 CTAACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAGATTTGGCGTCTCTGAATTAGACG
* *
79844664 GAGAGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGAT
131 GAGAGCAGATCGAAGATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGATGAC
* **
79844729 AGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATTGAAGATAACAGATCTGACATTCGTGAGTT
196 AGATTTGGCGTCTCTATATTAGACGAGGAGCAGATCAAAGATAACAGATCTGACATTCGTGAGTT
79844794 TACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCTATAGCAGATTTGACATTCGTGTGTT
261 TACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCTATAGCAGATTTGACATTCGTGTGTT
79844859 TACATCGA
326 TACATCGA
* * *
79844867 AGCAGATCGAAGATGACAAATTTGGCGTCTCTAAATTAGACGGGGAGCAGATCGAAGATAGCAGA
1 AGCAGATCGAAGAAG-CAAATTTGGAGTCTCTAAATTAGACGGAGAGCAGATCGAAGATAGCAGA
* *
79844932 TCTAACATTTGTGTGTTTACATCGAAGTAGATCGAAGATGATAGATTTGGCGTCTCTGAATTAGA
65 TCTAACATTCGTGTGTTTACATCGAAG-AGATCGAAGATGACAGATTTGGCGTCTCTGAATTAGA
79844997 C-GAGGAGCAGATCGAAGATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGAT
129 CGGA-GAGCAGATCGAAGATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGAT
* * *
79845061 GACAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGACATTCGTGT
193 GACAGATTTGGCGTCTCTATATTAGACGAGGAGCAGATCAAAGATAACAGATCTGACATTCGTGA
79845126 GTTTACATCAAAG
258 GTTTACATCAAAG
79845139 CAGACAGATT
Statistics
Matches: 249, Mismatches: 20, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
333 14 0.06
334 71 0.29
335 164 0.66
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (333 bp):
AGCAGATCGAAGAAGCAAATTTGGAGTCTCTAAATTAGACGGAGAGCAGATCGAAGATAGCAGAT
CTAACATTCGTGTGTTTACATCGAAGAGATCGAAGATGACAGATTTGGCGTCTCTGAATTAGACG
GAGAGCAGATCGAAGATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAGATGAC
AGATTTGGCGTCTCTATATTAGACGAGGAGCAGATCAAAGATAACAGATCTGACATTCGTGAGTT
TACATCAAAGAAGATCGAAGACGACAGACTTGGCGTCTCTATAGCAGATTTGACATTCGTGTGTT
TACATCGA
Found at i:79845141 original size:45 final size:45
Alignment explanation
Indices: 79844834--79845142 Score: 156
Period size: 45 Copynumber: 6.9 Consensus size: 45
79844824 TGGCGTCTCT
* *
79844834 ATAGCAGATTTGACATTCGTGTGTTTACATCGAAGCAGATCGAAG
1 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG
* * * * ** * *
79844879 AT-GACAAATTTGGCGTCTC-TA-AATTAGA-CGGGGAGCAGATCGAAG
1 ATAG-CAGATCTGACAT-TCGTATGTTTACATC--GAAGCAGATCGAAG
* * * *
79844924 ATAGCAGATCTAACATTTGTGTGTTTACATCGAAGTAGATCGAAG
1 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG
* * * * * * *
79844969 AT-GATAGATTTGGC-GTC-TCTGAATTAGA-CGAGGAGCAGATCGAAG
1 ATAG-CAGATCTGACATTCGTATG-TTTACATCGA--AGCAGATCGAAG
79845014 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG
1 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG
* * * * * * *
79845059 AT-GACAGATTTGGCGTCTC-TAT-ATTAGA-CGGGGAGCAGATCAAAG
1 ATAG-CAGATCTGACAT-TCGTATGTTTACATC--GAAGCAGATCGAAG
* *
79845104 ATAGCAGATCTGACATTCGTGTGTTTACATCAAAGCAGA
1 ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGA
79845143 CAGATTTGGC
Statistics
Matches: 188, Mismatches: 52, Indels: 48
0.65 0.18 0.17
Matches are distributed among these distances:
43 8 0.04
44 19 0.10
45 132 0.70
46 21 0.11
47 8 0.04
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27
Consensus pattern (45 bp):
ATAGCAGATCTGACATTCGTATGTTTACATCGAAGCAGATCGAAG
Found at i:79846072 original size:8 final size:8
Alignment explanation
Indices: 79846059--79846084 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
79846049 AGTTGATGGC
79846059 GGCGCGTG
1 GGCGCGTG
79846067 GGCGCGTG
1 GGCGCGTG
79846075 GGCGCGTG
1 GGCGCGTG
79846083 GG
1 GG
79846085 AGCCTGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.65, T:0.12
Consensus pattern (8 bp):
GGCGCGTG
Found at i:79846621 original size:25 final size:25
Alignment explanation
Indices: 79846589--79846642 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
79846579 TTTTAATCCT
* *
79846589 TTTTAAATTTTTTATAATTTATTTA
1 TTTTAAATATTATATAATTTATTTA
79846614 TTTTAAATATTATATAATTTATTTA
1 TTTTAAATATTATATAATTTATTTA
79846639 TTTT
1 TTTT
79846643 TACTATAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
TTTTAAATATTATATAATTTATTTA
Found at i:79846707 original size:29 final size:29
Alignment explanation
Indices: 79846672--79846842 Score: 93
Period size: 29 Copynumber: 5.6 Consensus size: 29
79846662 GAACGTAGAA
79846672 ATTATTATATATATTATTTTTATTTTTAT
1 ATTATTATATATATTATTTTTATTTTTAT
**
79846701 ATTATTA-ATTATATTATTTACATTTTTAT
1 ATTATTATA-TATATTATTTTTATTTTTAT
* *
79846730 A-TATTATGATTTA-TACATTTTATTATATATCAT
1 ATTATTAT-ATATATTA-TTTTTATT-T-T-T-AT
* *
79846763 TTTATTATATACATTATTCATTATATTTTT-T
1 ATTATTATATATATTATT--TT-TATTTTTAT
*
79846794 ATT-TTATTATATATTATATAATTATTTATTAT
1 ATTATTA-TATATATTAT-T-TTTATTT-TTAT
*
79846826 -TTATTATTTATTATTAT
1 ATTATTATATA-TATTAT
79846843 GTATAATTTT
Statistics
Matches: 109, Mismatches: 14, Indels: 35
0.69 0.09 0.22
Matches are distributed among these distances:
28 8 0.07
29 34 0.31
30 10 0.09
31 22 0.20
32 12 0.11
33 7 0.06
34 9 0.08
35 3 0.03
36 4 0.04
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (29 bp):
ATTATTATATATATTATTTTTATTTTTAT
Found at i:79846796 original size:7 final size:7
Alignment explanation
Indices: 79846786--79846840 Score: 65
Period size: 7 Copynumber: 7.6 Consensus size: 7
79846776 TTATTCATTA
*
79846786 TATTTTT
1 TATTTAT
79846793 TATTTTAT
1 TA-TTTAT
*
79846801 TATATAT
1 TATTTAT
*
79846808 TATATAAT
1 TAT-TTAT
79846816 TATTTAT
1 TATTTAT
79846823 TATTTAT
1 TATTTAT
79846830 TATTTAT
1 TATTTAT
79846837 TATT
1 TATT
79846841 ATGTATAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
7 30 0.73
8 11 0.27
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TATTTAT
Found at i:79857396 original size:14 final size:15
Alignment explanation
Indices: 79857365--79857398 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
79857355 GTTTTTCTAT
*
79857365 TTTAATTTTTTGAAA
1 TTTAATCTTTTGAAA
79857380 TTTAATCTTTT-AAA
1 TTTAATCTTTTGAAA
79857394 TTTAA
1 TTTAA
79857399 AATTTTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (15 bp):
TTTAATCTTTTGAAA
Found at i:79868445 original size:19 final size:19
Alignment explanation
Indices: 79868421--79868472 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
79868411 CTTAGATCCA
79868421 TTTATTTTTATTT-CATTTT
1 TTTATTTTT-TTTCCATTTT
*
79868440 TTTATTTTTTTTCCATTTC
1 TTTATTTTTTTTCCATTTT
* *
79868459 CTTATTCTTTTTCC
1 TTTATTTTTTTTCC
79868473 CTTTCTTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 3 0.10
19 26 0.90
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (19 bp):
TTTATTTTTTTTCCATTTT
Found at i:79868480 original size:18 final size:19
Alignment explanation
Indices: 79868441--79868477 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
79868431 TTTCATTTTT
*
79868441 TTATTTTTTTTCCATTTCC
1 TTATTCTTTTTCCATTTCC
*
79868460 TTATTCTTTTTCCCTTTC
1 TTATTCTTTTTCCATTTC
79868478 TTACTTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTCTTTTTCCATTTCC
Found at i:79873380 original size:21 final size:21
Alignment explanation
Indices: 79873356--79873396 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79873346 TTTCCTATGA
79873356 TATGAATTGGACTAAATTGAG
1 TATGAATTGGACTAAATTGAG
* *
79873377 TATGAATTGTATTAAATTGA
1 TATGAATTGGACTAAATTGA
79873397 TGTTAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.02, G:0.20, T:0.39
Consensus pattern (21 bp):
TATGAATTGGACTAAATTGAG
Found at i:79874418 original size:17 final size:17
Alignment explanation
Indices: 79874396--79874435 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
79874386 TTGGTGGATT
79874396 TTGTGACTAGGAGAAGG
1 TTGTGACTAGGAGAAGG
79874413 TTGTGACTAGGAGAAGG
1 TTGTGACTAGGAGAAGG
79874430 TTGTGA
1 TTGTGA
79874436 TGCAGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.28, C:0.05, G:0.40, T:0.28
Consensus pattern (17 bp):
TTGTGACTAGGAGAAGG
Found at i:79875476 original size:16 final size:13
Alignment explanation
Indices: 79875439--79875467 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
79875429 AGACTTATGT
79875439 GGATCAGTGTGGC
1 GGATCAGTGTGGC
79875452 GGATCAGTGTGGC
1 GGATCAGTGTGGC
79875465 GGA
1 GGA
79875468 GACTCAGTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.14, G:0.48, T:0.21
Consensus pattern (13 bp):
GGATCAGTGTGGC
Found at i:79876137 original size:26 final size:26
Alignment explanation
Indices: 79876108--79876262 Score: 110
Period size: 26 Copynumber: 6.2 Consensus size: 26
79876098 TATCTAGAGA
79876108 TCCTGATTAAAGGCTCTTTGTGAGCT
1 TCCTGATTAAAGGCTCTTTGTGAGCT
* * * *
79876134 TCCTAATTAAAAGTTCTTTGTGAACT
1 TCCTGATTAAAGGCTCTTTGTGAGCT
* *
79876160 TCCTGATT-ATGGCT-TTTATGAGCT
1 TCCTGATTAAAGGCTCTTTGTGAGCT
**** *
79876184 TCCT-ATTATATA-GC-CCGAATAAGCT
1 TCCTGATTA-A-AGGCTCTTTGTGAGCT
79876209 TCCTGA-T--AGGCTCTTTGTGAGCT
1 TCCTGATTAAAGGCTCTTTGTGAGCT
* * *
79876232 TCCCGATTAATGCCTCTTTGTGAGCT
1 TCCTGATTAAAGGCTCTTTGTGAGCT
79876258 TCCTG
1 TCCTG
79876263 TTACATGGCT
Statistics
Matches: 95, Mismatches: 24, Indels: 20
0.68 0.17 0.14
Matches are distributed among these distances:
21 1 0.01
22 2 0.02
23 14 0.15
24 13 0.14
25 17 0.18
26 48 0.51
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (26 bp):
TCCTGATTAAAGGCTCTTTGTGAGCT
Found at i:79881444 original size:8 final size:8
Alignment explanation
Indices: 79881431--79881473 Score: 54
Period size: 8 Copynumber: 5.4 Consensus size: 8
79881421 AATTGAGTTC
79881431 AAAATATA
1 AAAATATA
79881439 AAAATATA
1 AAAATATA
79881447 AAAATAATA
1 AAAAT-ATA
79881456 ATAAA-ATA
1 A-AAATATA
79881464 AAAA-ATA
1 AAAATATA
79881471 AAA
1 AAA
79881474 TAAGATTCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
7 9 0.27
8 17 0.52
9 4 0.12
10 3 0.09
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAATATA
Found at i:79881464 original size:17 final size:19
Alignment explanation
Indices: 79881431--79881476 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 19
79881421 AATTGAGTTC
79881431 AAAAT-ATAA-AAATAT-A
1 AAAATAATAATAAATATAA
79881447 AAAATAATAATAAA-ATAA
1 AAAATAATAATAAATATAA
79881465 AAAATAA-AATAA
1 AAAATAATAATAA
79881477 GATTCAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 5 0.19
17 11 0.41
18 11 0.41
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAATAATAATAAATATAA
Found at i:79882533 original size:14 final size:14
Alignment explanation
Indices: 79882514--79882540 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
79882504 GGTAAAACTT
79882514 AATAAAATAAAAAG
1 AATAAAATAAAAAG
79882528 AATAAAATAAAAA
1 AATAAAATAAAAA
79882541 TAAGTAAGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (14 bp):
AATAAAATAAAAAG
Found at i:79886425 original size:40 final size:40
Alignment explanation
Indices: 79886345--79886515 Score: 166
Period size: 40 Copynumber: 4.3 Consensus size: 40
79886335 TCTTCGGAAT
* * * * **
79886345 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCAAGTC
1 TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC
* * * *
79886384 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAAGC-ACTAGCACAAATGCCTTCGGGTC
* * *
79886424 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC
* * * *
79886464 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGAGAC
1 TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC
79886504 TTAGCCCGGATA
1 TTAGCCCGGATA
79886516 TCATTCAAAT
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 5 0.05
40 103 0.93
41 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAAGCACTAGCACAAATGCCTTCGGGTC
Found at i:79907443 original size:14 final size:16
Alignment explanation
Indices: 79907411--79907449 Score: 55
Period size: 14 Copynumber: 2.5 Consensus size: 16
79907401 TAAATAATTA
79907411 TATTATTTATCATATAT
1 TATTATTTA-CATATAT
79907428 TATTATTTA-ATA-AT
1 TATTATTTACATATAT
79907442 TATTATTT
1 TATTATTT
79907450 TGGTTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.45
15 3 0.14
17 9 0.41
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATTTACATATAT
Found at i:79907759 original size:8 final size:9
Alignment explanation
Indices: 79907738--79907762 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
79907728 AATATTAAAT
79907738 TTTTTTATA
1 TTTTTTATA
79907747 TTTTTTATA
1 TTTTTTATA
79907756 TTTTTTA
1 TTTTTTA
79907763 ATGATGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTTTATA
Found at i:79907816 original size:26 final size:27
Alignment explanation
Indices: 79907783--79907846 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 27
79907773 TAAAAAAATC
* * *
79907783 TATTTTTA-ATAATTTTAATTTTTTTA
1 TATTTTTATAAAATTTAAAATTTTTTA
79907809 TATTTTTATTAAAATTTAAAATTTTTTA
1 TATTTTTA-TAAAATTTAAAATTTTTTA
*
79907837 TTTTTTTATA
1 TATTTTTATA
79907847 TTTTTTTCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.25
27 2 0.06
28 22 0.69
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (27 bp):
TATTTTTATAAAATTTAAAATTTTTTA
Found at i:79910134 original size:51 final size:51
Alignment explanation
Indices: 79910058--79910160 Score: 188
Period size: 51 Copynumber: 2.0 Consensus size: 51
79910048 TCTATGGTAG
*
79910058 AGATAATCTCTCATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA
1 AGATAATCTCTAATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA
*
79910109 AGATAATCTCTAATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGGCAA
1 AGATAATCTCTAATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA
79910160 A
1 A
79910161 CTCAACAATG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (51 bp):
AGATAATCTCTAATTCGAGGAAGTGAAGGGTCATCTGTTGAGAAAAGACAA
Found at i:79914247 original size:17 final size:17
Alignment explanation
Indices: 79914225--79914259 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
79914215 TAATCGTTTA
79914225 ATGGGTGTATTTTTTCT
1 ATGGGTGTATTTTTTCT
79914242 ATGGGTGTATTTTTTCT
1 ATGGGTGTATTTTTTCT
79914259 A
1 A
79914260 AGGTTGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.14, C:0.06, G:0.23, T:0.57
Consensus pattern (17 bp):
ATGGGTGTATTTTTTCT
Found at i:79914267 original size:17 final size:17
Alignment explanation
Indices: 79914227--79914267 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
79914217 ATCGTTTAAT
*
79914227 GGGTGTATTTTTTCTAT
1 GGGTGTATTTTTTCTAA
79914244 GGGTGTATTTTTTCTAA
1 GGGTGTATTTTTTCTAA
*
79914261 GGTTGTA
1 GGGTGTA
79914268 AAAGAATCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.15, C:0.05, G:0.27, T:0.54
Consensus pattern (17 bp):
GGGTGTATTTTTTCTAA
Found at i:79928555 original size:25 final size:25
Alignment explanation
Indices: 79928507--79928555 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
79928497 TTAATGCTTA
* * *
79928507 GTAAGTTCGTATATAAGCATTTAAT
1 GTAAGTTCATATAAAAGCAATTAAT
*
79928532 GTAAGTTCATATAAAAGGAATTAA
1 GTAAGTTCATATAAAAGCAATTAA
79928556 ACTTATCAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (25 bp):
GTAAGTTCATATAAAAGCAATTAAT
Found at i:79929203 original size:13 final size:13
Alignment explanation
Indices: 79929185--79929209 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79929175 TCGAGCACAC
79929185 GCCCGTGTCCCTG
1 GCCCGTGTCCCTG
79929198 GCCCGTGTCCCT
1 GCCCGTGTCCCT
79929210 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.48, G:0.28, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTG
Found at i:79929464 original size:31 final size:31
Alignment explanation
Indices: 79929426--79929486 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
79929416 GACACATGAC
79929426 TGAGCGACACGCCCAAAGGGTTGGCCGTGTA
1 TGAGCGACACGCCCAAAGGGTTGGCCGTGTA
79929457 TGAGCGACACGCCCAAAGGGTTGGCCGTGT
1 TGAGCGACACGCCCAAAGGGTTGGCCGTGT
79929487 GTCACACAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.21, C:0.26, G:0.36, T:0.16
Consensus pattern (31 bp):
TGAGCGACACGCCCAAAGGGTTGGCCGTGTA
Found at i:79929745 original size:33 final size:33
Alignment explanation
Indices: 79929699--79929765 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
79929689 GTATTTAGGA
79929699 TTACCACTCCAATAATCACATTTTATACTTGGC
1 TTACCACTCCAATAATCACATTTTATACTTGGC
*
79929732 TTACCACTTCAATAATCACATTTTATACTTGGC
1 TTACCACTCCAATAATCACATTTTATACTTGGC
79929765 T
1 T
79929766 CGTTTTATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.30, C:0.25, G:0.06, T:0.39
Consensus pattern (33 bp):
TTACCACTCCAATAATCACATTTTATACTTGGC
Found at i:79935225 original size:22 final size:22
Alignment explanation
Indices: 79935197--79935318 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
79935187 TTCCACATCC
79935197 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
79935219 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
79935243 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
79935266 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
79935290 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
79935313 ATCACA
1 ATCACA
79935319 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:79935394 original size:49 final size:47
Alignment explanation
Indices: 79935169--79935816 Score: 921
Period size: 47 Copynumber: 13.6 Consensus size: 47
79935159 CCCTTCGGGA
* * *
79935169 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79935216 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79935263 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
79935310 CTTATCACACATACACA-TGTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
79935357 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
79935406 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
79935453 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
79935500 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
79935549 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
79935596 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
79935643 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
79935692 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
79935741 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
79935790 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
79935817 TATTCAAATA
Statistics
Matches: 555, Mismatches: 34, Indels: 24
0.91 0.06 0.04
Matches are distributed among these distances:
46 3 0.01
47 328 0.59
49 221 0.40
50 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:79935425 original size:143 final size:143
Alignment explanation
Indices: 79935190--79935816 Score: 1059
Period size: 143 Copynumber: 4.4 Consensus size: 143
79935180 TATACACTTC
*
79935190 CACATCCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
79935253 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
66 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
79935318 ACATACACATGTT
131 ACATACACATGTT
*
79935331 CACATTCATCACATTGGTCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
*
79935396 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTTGGCCTTATCAC
66 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
79935461 ACATACACATGTT
131 ACATACACATGTT
79935474 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
79935539 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
66 GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
79935604 ACATACACATGTT
131 ACATACACATGTT
*
79935617 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
* * * *
79935682 GCCATTAGGCCTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTAGGCCTTAT
66 GCCATTCGGCCTTATCTC--ATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTAT
* *
79935746 CACATATATATACACT-TT
128 CAC--ACATACACA-TGTT
*
79935764 CACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATT
79935817 TATTCAAATA
Statistics
Matches: 465, Mismatches: 13, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
141 32 0.07
143 327 0.70
145 62 0.13
146 1 0.00
147 42 0.09
148 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.34
Consensus pattern (143 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCATCACATTG
GCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ACATACACATGTT
Found at i:79935719 original size:40 final size:42
Alignment explanation
Indices: 79935674--79935815 Score: 130
Period size: 49 Copynumber: 3.1 Consensus size: 42
79935664 TTCACATTCA
79935674 TCACAT-C-GGCCATTAGGCCTTATCACATATATATACACTT
1 TCACATACTGGCCATTAGGCCTTATCACATATATATACACTT
79935714 TCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTT
1 T--CA--CAT-AC--TGGCCATTAGGCCTTATCACATATATATACACTT
79935763 TCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACACTT
1 T--CA--CAT-AC--TGGCCATTAGGCCTTATCACATATATATACACTT
79935810 TCACAT
1 TCACAT
79935816 TTATTCAAAT
Statistics
Matches: 93, Mismatches: 0, Indels: 15
0.86 0.00 0.14
Matches are distributed among these distances:
40 1 0.01
42 2 0.02
43 3 0.03
44 3 0.03
45 2 0.02
46 1 0.01
47 13 0.14
49 68 0.73
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (42 bp):
TCACATACTGGCCATTAGGCCTTATCACATATATATACACTT
Found at i:79937325 original size:56 final size:56
Alignment explanation
Indices: 79937258--79937377 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
79937248 TATTAGTTTA
79937258 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
79937314 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
79937370 TTGCCCAT
1 TTGCCCAT
79937378 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:79940945 original size:37 final size:37
Alignment explanation
Indices: 79940890--79940997 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
79940880 TAGCTCGAAT
*
79940890 AATCCCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
79940927 AATCTCCACACGTAGTCATCGGGTCTTACTCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
79940964 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79940998 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:79941190 original size:48 final size:48
Alignment explanation
Indices: 79941138--79941283 Score: 238
Period size: 48 Copynumber: 3.0 Consensus size: 48
79941128 ATATATACAC
79941138 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
** * *
79941186 ATCTCATACATATTTCATGTTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
79941234 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
79941282 AT
1 AT
79941284 ATTTATCTTG
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 88 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:79944787 original size:58 final size:56
Alignment explanation
Indices: 79944676--79944862 Score: 240
Period size: 58 Copynumber: 3.3 Consensus size: 56
79944666 CCACTGACCG
* *
79944676 ATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATTACC
1 ATCTCGCACACATAATGCTCGGTT-AAGGAATTCGCACACACAGTGCCTCAATTACC
*
79944732 AATCTCGCACACATAATGCTCGGTTAATGGAATTCGCACACACAGTGCCTCAATTACTG
1 -ATCTCGCACACATAATGCTCGGTTAA-GGAATTCGCACACACAGTGCCTCAATTAC-C
* *
79944791 ATCTCGCACACATAGTGCTCGGTTAACGGAATTTGCACACACAGTGCCTCTAA-T--C
1 ATCTCGCACACATAATGCTCGGTTAA-GGAATTCGCACACACAGTGCCTC-AATTACC
79944846 AT-TCGCACACATAATGC
1 ATCTCGCACACATAATGC
79944863 CCATATTCAT
Statistics
Matches: 118, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
54 14 0.12
55 2 0.02
56 2 0.02
57 23 0.19
58 75 0.64
59 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24
Consensus pattern (56 bp):
ATCTCGCACACATAATGCTCGGTTAAGGAATTCGCACACACAGTGCCTCAATTACC
Found at i:79944828 original size:29 final size:29
Alignment explanation
Indices: 79944679--79944837 Score: 114
Period size: 29 Copynumber: 5.5 Consensus size: 29
79944669 CTGACCGATC
* *
79944679 TCGCACACATAGTGCTCGGTTGAA--GAAC
1 TCGCACACACAGTGCTCGGTT-AACGGAAT
** *
79944707 TCGCACACACAGTGCCTCAATT-AC-CAAT
1 TCGCACACACAGTG-CTCGGTTAACGGAAT
* * *
79944735 CTCGCACACATAATGCTCGGTTAATGGAAT
1 -TCGCACACACAGTGCTCGGTTAACGGAAT
** *
79944765 TCGCACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAACGGAAT
*
79944793 CTCGCACACATAGTGCTCGGTTAACGGAAT
1 -TCGCACACACAGTGCTCGGTTAACGGAAT
*
79944823 TTGCACACACAGTGC
1 TCGCACACACAGTGC
79944838 CTCTAATCAT
Statistics
Matches: 99, Mismatches: 23, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
27 1 0.01
28 27 0.27
29 61 0.62
30 10 0.10
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAACGGAAT
Found at i:79945055 original size:43 final size:43
Alignment explanation
Indices: 79944994--79945301 Score: 517
Period size: 43 Copynumber: 7.2 Consensus size: 43
79944984 CCTTGCTCGA
** *
79944994 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
79945037 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
79945080 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATATAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
79945123 ATCACCGGCACAAAGCCTGCTAGGCATGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
79945166 ATCACTGGCACGAAGCCTGCTAGGCACGAAAGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
*
79945209 ATCACCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
* *
79945252 ATTACCGGCACGAAGCCTGCTAGGCACGAAAGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
79945295 ATCACCG
1 ATCACCG
79945302 AGTTTCATGC
Statistics
Matches: 247, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 247 1.00
ACGTcount: A:0.32, C:0.31, G:0.23, T:0.14
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
Found at i:79947051 original size:37 final size:37
Alignment explanation
Indices: 79946996--79947103 Score: 189
Period size: 37 Copynumber: 2.9 Consensus size: 37
79946986 TAGCTCGAAT
*
79946996 AATCCCCACACGTAGTCATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
* *
79947033 AATCTCCACACGTAGTCATCGGGTCTTACTCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
79947070 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79947104 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:79947362 original size:48 final size:46
Alignment explanation
Indices: 79947244--79947385 Score: 230
Period size: 46 Copynumber: 3.0 Consensus size: 46
79947234 ATATATACAC
79947244 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT
**
79947290 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT--AT
* *
79947338 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT
79947384 AT
1 AT
79947386 ATTTATCTTG
Statistics
Matches: 88, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
46 46 0.52
48 42 0.48
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.36
Consensus pattern (46 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAT
Found at i:79951509 original size:42 final size:42
Alignment explanation
Indices: 79951379--79951520 Score: 135
Period size: 40 Copynumber: 3.4 Consensus size: 42
79951369 GCGATATCTT
* *** * * *
79951379 AGATATCGTCTTACATGTAATCTCGTATCGATGCCAATAGCCC
1 AGATATGGTCTTACACAAAATCTCATATAGATGCC-ATATCCC
* * * *
79951422 AGCTATGGCCTTACACAAAATCTTATATTGATGCC--ATCCC
1 AGATATGGTCTTACACAAAATCTCATATAGATGCCATATCCC
* * *
79951462 AGATATGGTCTTATACGAAGTCTCATATAGATGCCATATCCC
1 AGATATGGTCTTACACAAAATCTCATATAGATGCCATATCCC
79951504 AGATATGGTCTTACACA
1 AGATATGGTCTTACACA
79951521 TAGTTTTAGT
Statistics
Matches: 78, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
40 32 0.41
42 20 0.26
43 26 0.33
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.30
Consensus pattern (42 bp):
AGATATGGTCTTACACAAAATCTCATATAGATGCCATATCCC
Found at i:79951918 original size:51 final size:49
Alignment explanation
Indices: 79951844--79951942 Score: 171
Period size: 51 Copynumber: 2.0 Consensus size: 49
79951834 TCACATTATG
*
79951844 GAAAAATTATTTTTGCCCTTAAAGTTTCACATTTTTACATTTTAGTCCT
1 GAAAAATTATTTTTGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCCT
79951893 GAAAAATTATATTTTTGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCC
1 GAAAAA-T-TATTTTTGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCC
79951943 CTAGGCTTGT
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
49 6 0.13
50 1 0.02
51 40 0.85
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.45
Consensus pattern (49 bp):
GAAAAATTATTTTTGCCCTTAAAGTTTCACAGTTTTACATTTTAGTCCT
Found at i:79961327 original size:5 final size:5
Alignment explanation
Indices: 79961317--79961409 Score: 145
Period size: 5 Copynumber: 18.6 Consensus size: 5
79961307 AATAATTAAG
*
79961317 TATAT TATAT TATAT TATAT TATAT TATA- T-TCT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
79961365 TATAT TATAT TATAT TATAT TATAT TATAT TATTAT TATTAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TA-TAT TAT
79961410 TATATATAAA
Statistics
Matches: 83, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
3 1 0.01
4 2 0.02
5 69 0.83
6 11 0.13
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:79961410 original size:15 final size:15
Alignment explanation
Indices: 79961319--79961412 Score: 81
Period size: 13 Copynumber: 7.2 Consensus size: 15
79961309 TAATTAAGTA
79961319 TATTA-TATTA-TAT
1 TATTATTATTATTAT
79961332 TA-TATTA-TATTA-
1 TATTATTATTATTAT
*
79961344 TATTCTTA-TATTA-
1 TATTATTATTATTAT
79961357 TATTA-TATTA-TAT
1 TATTATTATTATTAT
79961370 TA-TATTA-TATTA-
1 TATTATTATTATTAT
79961382 TATTA-TATTA-TAT
1 TATTATTATTATTAT
79961395 TATTATTATTATTAT
1 TATTATTATTATTAT
79961410 TAT
1 TAT
79961413 ATATAAAAGA
Statistics
Matches: 67, Mismatches: 2, Indels: 22
0.74 0.02 0.24
Matches are distributed among these distances:
12 20 0.30
13 36 0.54
14 5 0.07
15 6 0.09
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTATTATTATTAT
Found at i:79962609 original size:6 final size:6
Alignment explanation
Indices: 79962598--79962622 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
79962588 TTGTGTACCG
79962598 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
79962623 CCGGCTTCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:79968635 original size:5 final size:5
Alignment explanation
Indices: 79968625--79968688 Score: 85
Period size: 5 Copynumber: 12.6 Consensus size: 5
79968615 AATAATTAAG
* *
79968625 TATAT TATAT TATAT TATAT TCT-T ATATTCT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT -TA-TAT TATAT TATAT TATAT TATAT
79968676 TATAT TATAT TAT
1 TATAT TATAT TAT
79968689 TATATATAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
4 1 0.02
5 48 0.91
6 3 0.06
7 1 0.02
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:79968691 original size:8 final size:8
Alignment explanation
Indices: 79968627--79968693 Score: 57
Period size: 8 Copynumber: 8.0 Consensus size: 8
79968617 TAATTAAGTA
79968627 TATTATATT
1 TATTATA-T
79968636 ATATTATAT
1 -TATTATAT
*
79968645 TCTTATAT
1 TATTATAT
*
79968653 TCTTATAT
1 TATTATAT
79968661 TA-TAT-T
1 TATTATAT
79968667 ATATTATATT
1 -TATTATA-T
79968677 ATATTATAT
1 -TATTATAT
79968686 TATTATAT
1 TATTATAT
79968694 ATAAAAGAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
6 1 0.02
7 5 0.10
8 27 0.53
9 2 0.04
10 16 0.31
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (8 bp):
TATTATAT
Found at i:79969831 original size:6 final size:6
Alignment explanation
Indices: 79969812--79969844 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
79969802 GTGTGTCGAA
*
79969812 TACTGT TACCGT TACTGT TACTGT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TAC
79969845 GGATTTGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (6 bp):
TACTGT
Found at i:79971064 original size:29 final size:29
Alignment explanation
Indices: 79971022--79971079 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
79971012 TCTAGTAAGA
*
79971022 TTGTTTCCCTTTCCCTTTTTGATGCAAAG
1 TTGTTTCCCTTTCCCCTTTTGATGCAAAG
79971051 TTGTTTCCCTTTCCCCTTTTGATGCAAAG
1 TTGTTTCCCTTTCCCCTTTTGATGCAAAG
79971080 CTATCTTGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.14, C:0.26, G:0.14, T:0.47
Consensus pattern (29 bp):
TTGTTTCCCTTTCCCCTTTTGATGCAAAG
Found at i:79976279 original size:29 final size:29
Alignment explanation
Indices: 79976237--79976295 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
79976227 AATCTCCGAT
*
79976237 AATAACCAGCTAGTCCCAAAAAACTTCAA
1 AATAACCAGCTAGTCCCAAAAAAATTCAA
*
79976266 AATAACTAGCTAGTCCCAAAAAAATTCAA
1 AATAACCAGCTAGTCCCAAAAAAATTCAA
79976295 A
1 A
79976296 CTTCTAACAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.51, C:0.24, G:0.07, T:0.19
Consensus pattern (29 bp):
AATAACCAGCTAGTCCCAAAAAAATTCAA
Found at i:79980935 original size:31 final size:31
Alignment explanation
Indices: 79980900--79980964 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
79980890 AGGCATTGGC
79980900 ACATACATGCATATATATAAAATATAAGCTT
1 ACATACATGCATATATATAAAATATAAGCTT
* *
79980931 ACATACATGCATATATATAACATATAATCTT
1 ACATACATGCATATATATAAAATATAAGCTT
79980962 ACA
1 ACA
79980965 ACCAAAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.15, G:0.05, T:0.32
Consensus pattern (31 bp):
ACATACATGCATATATATAAAATATAAGCTT
Found at i:79988668 original size:9 final size:9
Alignment explanation
Indices: 79988651--79988687 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
79988641 TTAATTTAGG
*
79988651 TTTATTTAA
1 TTTAATTAA
79988660 TTTAATTAA
1 TTTAATTAA
*
79988669 TTTAATTAG
1 TTTAATTAA
79988678 TTTAATTAA
1 TTTAATTAA
79988687 T
1 T
79988688 ACTTTAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTAATTAA
Found at i:79990127 original size:35 final size:35
Alignment explanation
Indices: 79990013--79990126 Score: 115
Period size: 36 Copynumber: 3.2 Consensus size: 35
79990003 ACATCATCAG
* * *
79990013 TCCAACCATAACACGCCAGATGCTCATACGAGCCAA
1 TCCAACCATAACACGCCA-AAGCTCATAAGAGCTAA
* * *
79990049 TCC--CTCATAAACACACCAAATGTTCACAAGAGCTAA
1 TCCAAC-CAT-AACACGCCAAA-GCTCATAAGAGCTAA
*
79990085 TCCAACCGTAACACGCCAAAGCTCATAAGAGCTAA
1 TCCAACCATAACACGCCAAAGCTCATAAGAGCTAA
79990120 TCCAACC
1 TCCAACC
79990127 GAAACACACC
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
34 1 0.02
35 24 0.38
36 35 0.56
37 2 0.03
38 1 0.02
ACGTcount: A:0.39, C:0.34, G:0.11, T:0.16
Consensus pattern (35 bp):
TCCAACCATAACACGCCAAAGCTCATAAGAGCTAA
Found at i:79992729 original size:22 final size:22
Alignment explanation
Indices: 79992701--79992745 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
79992691 TGAAAAAGAC
79992701 TGATTAATAAAACAAATTCATT
1 TGATTAATAAAACAAATTCATT
79992723 TGATTAATAAAACAAATTCATT
1 TGATTAATAAAACAAATTCATT
79992745 T
1 T
79992746 ACTACAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38
Consensus pattern (22 bp):
TGATTAATAAAACAAATTCATT
Found at i:80002185 original size:20 final size:20
Alignment explanation
Indices: 80002144--80002188 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
80002134 TTGGTATCAA
*
80002144 TATTGGTACTTAGAGGTAAG
1 TATTGGTACTTAGAGCTAAG
*
80002164 TATTGGTACTGTA-AGCTTAG
1 TATTGGTACT-TAGAGCTAAG
80002184 TATTG
1 TATTG
80002189 ATACCTTCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (20 bp):
TATTGGTACTTAGAGCTAAG
Found at i:80006729 original size:44 final size:44
Alignment explanation
Indices: 80006677--80006764 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
80006667 GAATGTTTCA
80006677 AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTTGT
1 AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTTGT
*
80006721 AATTATAAATGAAATTTTATGGCTTGGTTTGCATGATTGCTTGT
1 AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTTGT
80006765 GTTTTAGTCC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.44
Consensus pattern (44 bp):
AATTATAAATGAAATTTTATGGCTCGGTTTGCATGATTGCTTGT
Found at i:80008654 original size:55 final size:56
Alignment explanation
Indices: 80008564--80008714 Score: 241
Period size: 55 Copynumber: 2.7 Consensus size: 56
80008554 GAGATTGGCG
* * * *
80008564 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
80008621 CTAAGT-TGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
*
80008676 CTAAGTGTGCGAGTTTGATTATATAGCACTGAGTGTGCG
1 CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCG
80008715 GACTTAATAT
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
55 43 0.49
56 39 0.44
57 6 0.07
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:80008667 original size:28 final size:28
Alignment explanation
Indices: 80008564--80008714 Score: 241
Period size: 28 Copynumber: 5.4 Consensus size: 28
80008554 GAGATTGGCG
* * * *
80008564 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
80008593 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80008621 CTAAGT-TGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80008648 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80008676 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
80008704 CTGAGTGTGCG
1 CTAAGTGTGCG
80008715 GACTTAATAT
Statistics
Matches: 116, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
27 27 0.23
28 74 0.64
29 15 0.13
ACGTcount: A:0.27, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:80008726 original size:83 final size:84
Alignment explanation
Indices: 80008564--80008727 Score: 226
Period size: 83 Copynumber: 2.0 Consensus size: 84
80008554 GAGATTGGCG
* *
80008564 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTTG
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTTG
* *
80008629 CGAGTTTGATTATATAGCA
66 CGAGCTTGAATATATAGCA
* * *
80008648 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTTGATTATATAGCACTGAGTGT
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGT-T
80008712 GCG-GACTT-AATATATA
65 GCGAG-CTTGAATATATA
80008728 CTTTTGAATC
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
83 50 0.70
84 21 0.30
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35
Consensus pattern (84 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTTG
CGAGCTTGAATATATAGCA
Found at i:80016695 original size:28 final size:28
Alignment explanation
Indices: 80016591--80016713 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
80016581 GAGATTGGCG
* * * *
80016591 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
80016620 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
80016648 CTAAGTG-GCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
80016675 CTAAGTGTGCGAGTTTGATTACATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
80016703 CTGAGTGTGCG
1 CTAAGTGTGCG
80016714 GACTTAATAT
Statistics
Matches: 87, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
27 27 0.31
28 45 0.52
29 15 0.17
ACGTcount: A:0.27, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:80016725 original size:55 final size:55
Alignment explanation
Indices: 80016616--80016726 Score: 154
Period size: 55 Copynumber: 2.0 Consensus size: 55
80016606 TAAATTGTAC
* * *
80016616 AGCACTAAGTGTGCGAGTTTGATTATATAGCACTAAGTGGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTACATAGCACTAAGTGGCGAGCTTGAATATAT
*
80016671 AGCACTAAGTGTGCGAGTTTGATTACATAGCACTGAGTGTGCG-GACTT-AATATAT
1 AGCACTAAGTGTGCGAGTTTGATTACATAGCACTAAGTG-GCGAG-CTTGAATATAT
80016726 A
1 A
80016727 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
55 45 0.90
56 5 0.10
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTTGATTACATAGCACTAAGTGGCGAGCTTGAATATAT
Found at i:80032004 original size:43 final size:43
Alignment explanation
Indices: 80031943--80032030 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
80031933 TATCCTTATA
80031943 CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATAGTAG
1 CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATAGTAG
*
80031986 CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATGGTAG
1 CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATAGTAG
80032029 CA
1 CA
80032031 GGGAAAGTAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.30
Consensus pattern (43 bp):
CATTCTTCAACAAGCTTATGCTCACCTTGAGAAGTGATAGTAG
Found at i:80041427 original size:54 final size:53
Alignment explanation
Indices: 80041344--80041548 Score: 169
Period size: 54 Copynumber: 3.8 Consensus size: 53
80041334 TCCTTTTAAA
* * *
80041344 TTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAAC
1 TTACCAATG-CATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
* * * * * * * **
80041397 TCACCATTTGCAATGCCTTGGCATGGTCTTACATGGGATCTTTACCTTATCGTAGT
1 TTACCA-ATGC-ATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AAC
* * * * *
80041453 TTATCAATGCCATGCCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAAC
1 TTACCAATG-CATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
* * *
80041507 TTACCAATGTCATGCTTTGGCATGGTCTTACCTGGTATCCTT
1 TTACCAATG-CATGCCTTGACATGGTCTTACATGGTATCCTT
80041549 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 30, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
53 6 0.05
54 71 0.61
55 34 0.29
56 6 0.05
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (53 bp):
TTACCAATGCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAAC
Found at i:80041667 original size:13 final size:13
Alignment explanation
Indices: 80041649--80041673 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80041639 ATCATCAAGA
80041649 AATAAATTTATAT
1 AATAAATTTATAT
80041662 AATAAATTTATA
1 AATAAATTTATA
80041674 GATGCTGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATAAATTTATAT
Found at i:80043279 original size:79 final size:82
Alignment explanation
Indices: 80043168--80043352 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
80043158 GCTACTCGTT
* * *
80043168 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
80043231 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
80043248 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
80043311 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
80043328 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80043353 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:80043352 original size:40 final size:40
Alignment explanation
Indices: 80043149--80043352 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
80043139 CGGAATTTAA
** *
80043149 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
80043189 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
80043229 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
80043268 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
80043308 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
80043348 CCGGA
1 CCGGA
80043353 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:80049746 original size:42 final size:42
Alignment explanation
Indices: 80049687--80049772 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
80049677 TTCAAAATCG
*
80049687 TTCCAAAATCATTTTCATTGCTAGAACTTACTCATGTCATTC
1 TTCCAAAATCATTTTCATTGCTAGAACTTAATCATGTCATTC
*
80049729 TTCCAAGATCATTTTCATTGCTAGAACTTAATCATGTCATTC
1 TTCCAAAATCATTTTCATTGCTAGAACTTAATCATGTCATTC
80049771 TT
1 TT
80049773 ACCATCAAGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (42 bp):
TTCCAAAATCATTTTCATTGCTAGAACTTAATCATGTCATTC
Found at i:80053940 original size:50 final size:50
Alignment explanation
Indices: 80053825--80054102 Score: 226
Period size: 50 Copynumber: 5.5 Consensus size: 50
80053815 TGAGAACACA
* * * * *
80053825 TGTGTAGTACTATGTGCAGGCTACTATGTGCTTA--AGATGGTTTTAGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTG--TACCAGAT--ATTTAGGTCACT
* *
80053877 TGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCGCT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCACT
* * * * * * * * *
80053927 TGTATAGTACTAAGTGCAGGCAACTATGCGTACCCGACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TA-TTTAGGTCACT
* * * **
80053978 TGTGTAGTACTAAGTGCAAGCTACTACGTCTATCAGATGGTTAGGTCACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCACT
* * *
80054028 TGTGTAGTACTAAGTGCAGGCCACTACATGTACCAGAT-TGTT-GGTCGCAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAT-TTAGGTCAC-T
80054078 T-TGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
80054103 TACATACCAG
Statistics
Matches: 180, Mismatches: 39, Indels: 17
0.76 0.17 0.07
Matches are distributed among these distances:
49 30 0.17
50 83 0.46
51 33 0.18
52 34 0.19
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCACT
Found at i:80054005 original size:101 final size:101
Alignment explanation
Indices: 80053871--80054053 Score: 285
Period size: 101 Copynumber: 1.8 Consensus size: 101
80053861 ATGGTTTTAG
* * * * *
80053871 ATCACGTGTTTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATTTAGGTCGCTTGTATAGTA
1 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTACCAGATAGTTAGGTCACTTGTATAGTA
80053936 CTAAGTGCAGGCAACTATGCGTACCCGACAACTTCA
66 CTAAGTGCAGGCAACTATGCGTACCCGACAACTTCA
* * *
80053972 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTATCAGATGGTTAGGTCACTTGTGTAGTA
1 ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTACCAGATAGTTAGGTCACTTGTATAGTA
*
80054037 CTAAGTGCAGGCCACTA
66 CTAAGTGCAGGCAACTA
80054054 CATGTACCAG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (101 bp):
ATCACGTGTGTAGTACTAAGTGCAAGCTACTACGTCTACCAGATAGTTAGGTCACTTGTATAGTA
CTAAGTGCAGGCAACTATGCGTACCCGACAACTTCA
Found at i:80054145 original size:150 final size:152
Alignment explanation
Indices: 80053828--80054145 Score: 340
Period size: 150 Copynumber: 2.1 Consensus size: 152
80053818 GAACACATGT
* * * *
80053828 GTAGTACTATGTGCAGGCTACTATGTGCTTAAGATGGTTTTAGATCACGTGTTTAGTACTAAGTG
1 GTAGTAATATGTGCAAGCTACTACGTGCTTAAGATGG-TTTAGATCACGTGTGTAGTACTAAGTG
* * * *
80053893 CAGGCTACTACGTGTACCAGATATTTAGGTCGCTTGTATAGTACTAAGTGCAGGCAACTATGCGT
65 CAGGCCACTACATGTACCAGATATTTAGGTCGCTTGTATAGTACTAAGTGCAGGCAACTATACAT
* ** *
80053958 ACCCGACAACTTCAATCACGTGT
130 ACCAGACAACTTCAATCACAAGG
* * * * *
80053981 GTAGTACTAAGTGCAAGCTACTACGT-CTATCAGATGG-TTAGGTCACTTGTGTAGTACTAAGTG
1 GTAGTAATATGTGCAAGCTACTACGTGCT-TAAGATGGTTTAGATCACGTGTGTAGTACTAAGTG
* *
80054044 CAGGCCACTACATGTACCAGAT-TGTT-GGTCGCATT-TGTAGTACTAAGTGCAGGCTACTATAC
65 CAGGCCACTACATGTACCAGATAT-TTAGGTCGC-TTGTATAGTACTAAGTGCAGGCAACTATAC
* * ** *
80054106 ATACCAGATAGCTTCGGTTACAAGG
128 ATACCAGACAACTTCAATCACAAGG
*
80054131 GTGGTAATATGTGCA
1 GTAGTAATATGTGCA
80054146 GGCAACCGTG
Statistics
Matches: 137, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
150 58 0.42
151 47 0.34
152 2 0.01
153 30 0.22
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (152 bp):
GTAGTAATATGTGCAAGCTACTACGTGCTTAAGATGGTTTAGATCACGTGTGTAGTACTAAGTGC
AGGCCACTACATGTACCAGATATTTAGGTCGCTTGTATAGTACTAAGTGCAGGCAACTATACATA
CCAGACAACTTCAATCACAAGG
Found at i:80055313 original size:20 final size:20
Alignment explanation
Indices: 80055288--80055344 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
80055278 TTATGAATAC
80055288 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
80055308 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
80055328 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
80055345 TCATTATTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:80055319 original size:11 final size:11
Alignment explanation
Indices: 80055288--80055343 Score: 66
Period size: 11 Copynumber: 5.5 Consensus size: 11
80055278 TTATGAATAC
80055288 ATCATGTGCAT
1 ATCATGTGCAT
*
80055299 ATCA--TACAT
1 ATCATGTGCAT
80055308 ATCATGTGCAT
1 ATCATGTGCAT
*
80055319 ATC--GTACAT
1 ATCATGTGCAT
80055328 ATCATGTGCAT
1 ATCATGTGCAT
80055339 ATCAT
1 ATCAT
80055344 ATCATTATTG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:80055419 original size:25 final size:25
Alignment explanation
Indices: 80055391--80055438 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80055381 ATAATTAAAC
* * *
80055391 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
80055416 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
80055439 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:80057848 original size:18 final size:17
Alignment explanation
Indices: 80057820--80057857 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
80057810 AATAATTTAG
80057820 TAACTATGACTCGAGAAAA
1 TAACTATGACT--AGAAAA
80057839 TAAC-ATGACTAGAAAA
1 TAACTATGACTAGAAAA
80057855 TAA
1 TAA
80057858 GTAAAAGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 9 0.47
18 6 0.32
19 4 0.21
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (17 bp):
TAACTATGACTAGAAAA
Found at i:80059145 original size:17 final size:17
Alignment explanation
Indices: 80059125--80059159 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
80059115 TCTCAAAAGC
80059125 ACAAAAATTATCAAGAA
1 ACAAAAATTATCAAGAA
80059142 ACAAAAATTATCAAGAA
1 ACAAAAATTATCAAGAA
80059159 A
1 A
80059160 AGTCATCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.11, G:0.06, T:0.17
Consensus pattern (17 bp):
ACAAAAATTATCAAGAA
Found at i:80060106 original size:23 final size:24
Alignment explanation
Indices: 80060068--80060115 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
80060058 CTAATTTGTG
*
80060068 AGTAAAAGTTTTTAGTACTAAAGT
1 AGTAAAAGTTTTTAGTACAAAAGT
80060092 AGTAAAA-TTTTTAGTACAAAAGT
1 AGTAAAAGTTTTTAGTACAAAAGT
80060115 A
1 A
80060116 TTCTTTCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.46, C:0.04, G:0.15, T:0.35
Consensus pattern (24 bp):
AGTAAAAGTTTTTAGTACAAAAGT
Found at i:80060167 original size:21 final size:21
Alignment explanation
Indices: 80060128--80060180 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
80060118 CTTTCTTTTT
*
80060128 TATGATATATATTTAATTTGAGA
1 TATGATAT-TATTTAATTT-AAA
80060151 TATGATATTATTT-ATTTAAA
1 TATGATATTATTTAATTTAAA
80060171 TCATGATATT
1 T-ATGATATT
80060181 GGTAATCAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 3 0.11
21 12 0.43
22 5 0.18
23 8 0.29
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (21 bp):
TATGATATTATTTAATTTAAA
Found at i:80065073 original size:41 final size:41
Alignment explanation
Indices: 80065016--80065097 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
80065006 CTGATACTTC
80065016 GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT
1 GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT
80065057 GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT
1 GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT
80065098 TGTTAAACAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (41 bp):
GCATAATCGAATAATCCTAAAAAAATCTTACTTGGCTGGTT
Found at i:80068242 original size:79 final size:81
Alignment explanation
Indices: 80068106--80068290 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
80068096 TTGAATGATG
*
80068106 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
80068170 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
80068185 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
80068247 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
80068265 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80068291 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:80068304 original size:40 final size:40
Alignment explanation
Indices: 80068107--80068290 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
80068097 TGAATGATGT
* * * *
80068107 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
80068147 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
80068187 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80068225 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
80068266 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80068291 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:80068312 original size:79 final size:79
Alignment explanation
Indices: 80068159--80068323 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
80068149 GGACTAAGAT
* **
80068159 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
80068224 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
80068238 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
80068301 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
80068317 CCGAAGG
1 CCGAAGG
80068324 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:80076159 original size:32 final size:33
Alignment explanation
Indices: 80076080--80076218 Score: 127
Period size: 32 Copynumber: 3.8 Consensus size: 33
80076070 AGATCCGAAG
80076080 GCATTTGTGCGAGATACTAATTCCGGGCTAAGCCGAA
1 GCATTTGTGCGAG-TACTAA-TCCGGGCTAAGCC--A
80076117 GGCATTTGTGCGAGTACTAATCCGGGCTAAGCC-
1 -GCATTTGTGCGAGTACTAATCCGGGCTAAGCCA
* *
80076150 GCATTTGTGCGATTACTAAATCCGGGTTAAGTCCCGAA
1 GCATTTGTGCGAGTACT-AATCCGGGCTAAG--CC--A
*
80076188 GGCATTTGTGCGAGTTACTATAACCGGGCTA
1 -GCATTTGTGCGAG-TACTA-ATCCGGGCTA
80076219 TGTCCCGAAG
Statistics
Matches: 87, Mismatches: 5, Indels: 16
0.81 0.05 0.15
Matches are distributed among these distances:
32 16 0.18
33 12 0.14
35 2 0.02
36 13 0.15
37 6 0.07
38 13 0.15
39 13 0.15
40 12 0.14
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (33 bp):
GCATTTGTGCGAGTACTAATCCGGGCTAAGCCA
Found at i:80076194 original size:71 final size:72
Alignment explanation
Indices: 80076080--80076218 Score: 203
Period size: 71 Copynumber: 1.9 Consensus size: 72
80076070 AGATCCGAAG
* *
80076080 GCATTTGTGCGAGATACTAATTCCGGGCTAAGCCGAAGGCATTTGTGCGAG-TACTA-ATCCGGG
1 GCATTTGTGCGAGATACTAAATCCGGGCTAAGCCGAAGGCATTTGTGCGAGTTACTATAACCGGG
80076143 CTAAGCC
66 CTAAGCC
* *
80076150 GCATTTGTGCGA-TTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCG
1 GCATTTGTGCGAGATACTAAATCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTATAACCG
80076214 GGCTA
64 GGCTA
80076219 TGTCCCGAAG
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
69 16 0.26
70 12 0.20
71 19 0.31
72 5 0.08
73 9 0.15
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (72 bp):
GCATTTGTGCGAGATACTAAATCCGGGCTAAGCCGAAGGCATTTGTGCGAGTTACTATAACCGGG
CTAAGCC
Found at i:80076224 original size:40 final size:39
Alignment explanation
Indices: 80076022--80076235 Score: 193
Period size: 40 Copynumber: 5.7 Consensus size: 39
80076012 TTGAATGATG
* * * *
80076022 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GA-TTACTAAA
* * *
80076061 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-TTACTAAA
*
80076101 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGTACT-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTACTAAA
80076137 TCCGGGCTAAG--CC----GCATTTGTGCGATTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTACTAAA
*
80076170 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-TTACTA-AA
*
80076211 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
80076236 AACGAGTAGC
Statistics
Matches: 150, Mismatches: 14, Indels: 21
0.81 0.08 0.11
Matches are distributed among these distances:
32 16 0.11
33 12 0.08
35 2 0.01
36 14 0.09
37 4 0.03
38 18 0.12
39 22 0.15
40 53 0.35
41 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTACTAAA
Found at i:80081757 original size:25 final size:25
Alignment explanation
Indices: 80081729--80081777 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
80081719 CCAGAGGACC
* *
80081729 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
80081754 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
80081778 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:80084401 original size:25 final size:25
Alignment explanation
Indices: 80084373--80084439 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
80084363 GTTCCGACCC
*
80084373 ACAGCTCGTGTGAGCATACTGATTT
1 ACAGCTCGTGTGAGCATACCGATTT
* *
80084398 ACAGCTCGTGTAAACATACCGATTT
1 ACAGCTCGTGTGAGCATACCGATTT
80084423 ACAGCTC--GTGAGCATAC
1 ACAGCTCGTGTGAGCATAC
80084440 ATGTACAAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
23 8 0.22
25 29 0.78
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACCGATTT
Found at i:80085956 original size:19 final size:19
Alignment explanation
Indices: 80085932--80085971 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
80085922 AAACAGGGTC
80085932 ACACGCCCGTGTGCC-CAGG
1 ACACGCCCGTGT-CCTCAGG
80085951 ACACGCCCGTGTCCTCAGG
1 ACACGCCCGTGTCCTCAGG
80085970 AC
1 AC
80085972 GTGTAACTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.17, C:0.42, G:0.28, T:0.12
Consensus pattern (19 bp):
ACACGCCCGTGTCCTCAGG
Found at i:80086658 original size:14 final size:14
Alignment explanation
Indices: 80086635--80086673 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
80086625 TTGTTCCACT
80086635 GAAAATGATTTTCG
1 GAAAATGATTTTCG
* *
80086649 GAAAAAGATTTTTG
1 GAAAATGATTTTCG
80086663 GAAAATGATTT
1 GAAAATGATTT
80086674 ACTTTTCTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.36
Consensus pattern (14 bp):
GAAAATGATTTTCG
Found at i:80087148 original size:15 final size:15
Alignment explanation
Indices: 80087128--80087179 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
80087118 ACTACAAAAC
80087128 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
80087143 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
80087162 ATTTATTATTAACAT
1 ATTTATTATTAATAT
80087177 ATT
1 ATT
80087180 CAATATTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:80087244 original size:16 final size:16
Alignment explanation
Indices: 80087213--80087249 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
80087203 ATGTCAATAA
80087213 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
80087229 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
80087245 TATTA
1 TATTA
80087250 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:80087301 original size:22 final size:22
Alignment explanation
Indices: 80087261--80087316 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
80087251 AATAAAATTG
*
80087261 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
80087281 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
80087303 TATTAATAATTTAT
1 AAATAATAAATTAT
80087317 TATAAGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:80088721 original size:49 final size:48
Alignment explanation
Indices: 80088661--80088830 Score: 156
Period size: 49 Copynumber: 3.6 Consensus size: 48
80088651 CATTAAAGTT
*
80088661 AATGTCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCC
1 AATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATA-CGAGGCC
* * * *
80088710 AATGCCATGTCCCAGACAGGTCTTACACTGAC--ACACA-AC-AAGCT
1 AATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATACGAGGCC
* * *
80088754 GACGCCATGTCCCAGACAGGTCTTACACT-AGCTTGT-ATATCCCGAGGCC
1 AATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-TCATAT-ACGAGGCC
* * *
80088803 GATG-TATGTCCCAGACATGTCTTACACT
1 AATGCCATGTCCCAGACAGGTCTTACACT
80088831 AGCTCTCGTC
Statistics
Matches: 99, Mismatches: 15, Indels: 15
0.77 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 31 0.31
45 1 0.01
46 3 0.03
47 3 0.03
48 23 0.23
49 37 0.37
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
AATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATACGAGGCC
Found at i:80088910 original size:58 final size:57
Alignment explanation
Indices: 80088802--80088938 Score: 152
Period size: 58 Copynumber: 2.6 Consensus size: 57
80088792 ATCCCGAGGC
* *
80088802 CGATGTATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGTCGATGCATGTTT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAATGTCGATGCATGTTT
* *
80088860 CGATGCATGTCCCAGACATTTCTTACACTGGCTCTC-AT-AATGT-G--GC------
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAATGTCGATGCATGTTT
80088906 CGATGCATGTCCCAGACATGTCTTACACTAGCT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT
80088939 TACATACCAC
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
46 31 0.42
52 2 0.03
54 1 0.01
55 5 0.07
56 1 0.01
58 33 0.45
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (57 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAATGTCGATGCATGTTT
Found at i:80090630 original size:39 final size:39
Alignment explanation
Indices: 80090485--80090706 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 39
80090475 GCTACTCGTT
* *
80090485 CAAATGCCTTCGGGACATAGCCCGGTTATT-GTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTCGCA
* * *
80090525 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
*
80090565 CAAATGCCTTC-GGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
80090603 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * *
80090642 CAAATGCCTTCGGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAAT-TAGTAAC-TCGCA
*
80090683 CAAA-GCCTTCGGACTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGA
80090707 CATCATTCAA
Statistics
Matches: 159, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 33 0.21
39 55 0.35
40 63 0.40
41 8 0.05
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:80090691 original size:117 final size:119
Alignment explanation
Indices: 80090485--80090706 Score: 292
Period size: 117 Copynumber: 1.9 Consensus size: 119
80090475 GCTACTCGTT
* *
80090485 CAAATGCCTTCGGGACATAGCCCGGTTATTGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTAATTGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
80090550 ATTTAGTAACTCGCACAAATGCCTTCGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
80090603 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGTAATT-GTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
80090665 GGATATGGTCACTTAGCACAAA-GCCTTCGGACTTAGCCCGGA
64 GGATATAGTAAC-TAGCACAAATGCCTTCGGACTTAGCCCGGA
80090707 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
116 6 0.07
117 51 0.57
118 33 0.37
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCCGGTAATTGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:80098611 original size:39 final size:40
Alignment explanation
Indices: 80098488--80098711 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
80098478 GCTACTCGTT
* *
80098488 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
80098528 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
80098568 CAAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCT
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
80098607 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
80098646 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
80098687 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80098712 CATCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 70 0.44
40 75 0.47
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:80098654 original size:78 final size:80
Alignment explanation
Indices: 80098488--80098711 Score: 242
Period size: 79 Copynumber: 2.8 Consensus size: 80
80098478 GCTACTCGTT
** *
80098488 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
80098553 ATTTAGTAACTCGCA
66 AATTAGTAACTCGCA
* * * *
80098568 CAAATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCTCAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACATAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
80098630 GAATTAGTATCTCGCA
65 GAATTAGTAACTCGCA
* * * * * * *
80098646 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCC
80098709 GGA
64 GGA
80098712 CATCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
77 2 0.02
78 34 0.28
79 53 0.43
80 33 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:80098671 original size:118 final size:120
Alignment explanation
Indices: 80098482--80098709 Score: 295
Period size: 118 Copynumber: 1.9 Consensus size: 120
80098472 GATATAGCTA
* * *
80098482 CTCGTTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTA
1 CTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
* *
80098547 ACCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGAAATTAGTAT
66 ACCCGGATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGAAATTAGTAT
* *
80098601 CTCGCTCAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCT
1 CTCGCTCAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CT
** * *
80098663 TAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
64 TAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCG
80098710 GACATCATTC
Statistics
Matches: 94, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
117 4 0.04
118 54 0.57
119 36 0.38
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (120 bp):
CTCGCTCAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
ACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGAAATTAGTAT
Found at i:80100933 original size:20 final size:18
Alignment explanation
Indices: 80100896--80100946 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
80100886 CTATAGCAAC
80100896 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
80100913 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
80100933 TTACAACTTTACAA
1 TCACAA-TTTACAA
80100947 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:80103326 original size:35 final size:35
Alignment explanation
Indices: 80103220--80103452 Score: 252
Period size: 35 Copynumber: 6.6 Consensus size: 35
80103210 CACATCGTAG
* * *
80103220 GTCCAACC-ATAACACATCAGATGCTCATACGAGCAA
1 GTCCAACCGA-AACACACCA-ATGCTCATAAGAGCTA
* ** * * * *
80103256 ATCCTTCCAAAACACATCAAATGCTCACAAAAGCTA
1 GTCCAACCGAAACACA-CCAATGCTCATAAGAGCTA
*
80103292 GTCCAACCGTAACACACCAATGCTCATAAGAGCTA
1 GTCCAACCGAAACACACCAATGCTCATAAGAGCTA
** * * *
80103327 GTCCAATTGAAACACGCCAATGCTCACAAAAGCTA
1 GTCCAACCGAAACACACCAATGCTCATAAGAGCTA
*
80103362 GTCCAACCGTAACACACCAATGCTCATAAGAGCTA
1 GTCCAACCGAAACACACCAATGCTCATAAGAGCTA
** *
80103397 GTCCAATTGAAACACGCCAATGCTCATAAGAGCTA
1 GTCCAACCGAAACACACCAATGCTCATAAGAGCTA
80103432 GTCCAACCGAAACACACCAAT
1 GTCCAACCGAAACACACCAAT
80103453 AGAGAGTATA
Statistics
Matches: 159, Mismatches: 36, Indels: 5
0.80 0.18 0.03
Matches are distributed among these distances:
35 123 0.77
36 34 0.21
37 2 0.01
ACGTcount: A:0.39, C:0.30, G:0.13, T:0.17
Consensus pattern (35 bp):
GTCCAACCGAAACACACCAATGCTCATAAGAGCTA
Found at i:80103359 original size:70 final size:70
Alignment explanation
Indices: 80103275--80103452 Score: 329
Period size: 70 Copynumber: 2.5 Consensus size: 70
80103265 AAACACATCA
80103275 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC
1 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC
80103340 ACGCC
66 ACGCC
80103345 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC
1 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC
80103410 ACGCC
66 ACGCC
* * *
80103415 AATGCTCATAAGAGCTAGTCCAACCGAAACACACCAAT
1 AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAAT
80103453 AGAGAGTATA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 105 1.00
ACGTcount: A:0.39, C:0.30, G:0.14, T:0.17
Consensus pattern (70 bp):
AATGCTCACAAAAGCTAGTCCAACCGTAACACACCAATGCTCATAAGAGCTAGTCCAATTGAAAC
ACGCC
Found at i:80115328 original size:63 final size:62
Alignment explanation
Indices: 80115229--80115346 Score: 218
Period size: 63 Copynumber: 1.9 Consensus size: 62
80115219 TCAGGAGTCT
80115229 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAATTGATA
1 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGG-AAAAATTAGTCATCAATAAAATAATTGATA
*
80115292 CAACTCCAGTGGGGGTACTGAAGTCAAAAGGGAAAAATTAGTCATCAATAAAATA
1 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAATTAGTCATCAATAAAATA
80115347 GTTAATACTC
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
62 23 0.43
63 31 0.57
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.21
Consensus pattern (62 bp):
CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAATTAGTCATCAATAAAATAATTGATA
Found at i:80115554 original size:6 final size:6
Alignment explanation
Indices: 80115543--80115596 Score: 63
Period size: 6 Copynumber: 8.5 Consensus size: 6
80115533 CTTCAATCTG
* *
80115543 CTCTTC CTCTTC CTCTTC CTCTTC TTCTTCTTC CTCCTC CTCCTC CTCTTC
1 CTCTTC CTCTTC CTCTTC CTCTTC --C-TCTTC CTCTTC CTCTTC CTCTTC
80115594 CTC
1 CTC
80115597 CAAATCACCC
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
6 36 0.84
7 1 0.02
8 1 0.02
9 5 0.12
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
CTCTTC
Found at i:80115574 original size:15 final size:15
Alignment explanation
Indices: 80115544--80115596 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
80115534 TTCAATCTGC
80115544 TCTTCCTCTTCCTCT
1 TCTTCCTCTTCCTCT
* * *
80115559 TCCTCTTCTTCTTCT
1 TCTTCCTCTTCCTCT
* * *
80115574 TCCTCCTCCTCCTCC
1 TCTTCCTCTTCCTCT
80115589 TCTTCCTC
1 TCTTCCTC
80115597 CAAATCACCC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (15 bp):
TCTTCCTCTTCCTCT
Found at i:80121886 original size:17 final size:17
Alignment explanation
Indices: 80121866--80121900 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
80121856 CATAAAATTA
80121866 AATTAAAA-ATAATTAAT
1 AATTAAAATATAA-TAAT
80121883 AATTAAAATATAATAAT
1 AATTAAAATATAATAAT
80121900 A
1 A
80121901 TCTAACAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AATTAAAATATAATAAT
Found at i:80125211 original size:12 final size:12
Alignment explanation
Indices: 80125194--80125220 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
80125184 AGAGAAATCC
80125194 CGGTTGAACTTT
1 CGGTTGAACTTT
80125206 CGGTTGAACTTT
1 CGGTTGAACTTT
80125218 CGG
1 CGG
80125221 AAGATTGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.19, G:0.30, T:0.37
Consensus pattern (12 bp):
CGGTTGAACTTT
Found at i:80138941 original size:25 final size:25
Alignment explanation
Indices: 80138904--80138952 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
80138894 ATAACACTTC
80138904 ACATACTTATGTTGTTACAAGAATT
1 ACATACTTATGTTGTTACAAGAATT
*
80138929 ACATACTTGTGTTGTTACAAGAAT
1 ACATACTTATGTTGTTACAAGAAT
80138953 AATGGTGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (25 bp):
ACATACTTATGTTGTTACAAGAATT
Found at i:80142653 original size:97 final size:94
Alignment explanation
Indices: 80142478--80142655 Score: 234
Period size: 97 Copynumber: 1.9 Consensus size: 94
80142468 CATTTGTGCG
* *
80142478 CTAGTGTAAGACATGTCTGGGACATGCATCGGCTATATTATGAGAGCCAATGTAAGACCATGTCT
1 CTAGTGCAAGACATGTCTGGGACATGCATCGGCGATATTATGAGAGCCAATGTAAGACCATGTCT
*
80142543 AGGACATGGCGTCGACATTGAAAAGAGAA
66 AGGACATGACGTCGACATTGAAAAGAGAA
* * *
80142572 CTAGTGCAAGACATGTCTGGGACATGGCATCGGCACGGATA-TGTGAGAGCTAGTGTAAGACCAT
1 CTAGTGCAAGACATGTCTGGGACAT-GCATCGG--C-GATATTATGAGAGCCAATGTAAGACCAT
*
80142636 GTCT-GAGATATGACGTCGAC
62 GTCTAG-GACATGACGTCGAC
80142656 CTCGATTTCG
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
94 24 0.33
95 7 0.10
96 1 0.01
97 37 0.51
98 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (94 bp):
CTAGTGCAAGACATGTCTGGGACATGCATCGGCGATATTATGAGAGCCAATGTAAGACCATGTCT
AGGACATGACGTCGACATTGAAAAGAGAA
Found at i:80148239 original size:46 final size:45
Alignment explanation
Indices: 80148187--80148491 Score: 382
Period size: 46 Copynumber: 6.6 Consensus size: 45
80148177 GCTCTCTGAA
* * *
80148187 ATGAAATATGTAAGACCATGGTTGAATGATACCATTGCAACATGAT
1 ATGAAATA-GTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
80148233 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
80148279 ATGAAA-AGAATAAGGCCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATAG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
80148325 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
80148371 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGTAACATGAC
1 ATGAAAT-AGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
80148417 ATGAAA-AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATAG--TAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
80148463 A-GAAAATGAGTAAGACCATAGTTGAAAGA
1 ATG-AAAT-AGTAAGACCATGGTTGAAAGA
80148492 CACTATGACA
Statistics
Matches: 229, Mismatches: 20, Indels: 20
0.85 0.07 0.07
Matches are distributed among these distances:
44 2 0.01
45 1 0.00
46 223 0.97
48 3 0.01
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (45 bp):
ATGAAATAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:80148344 original size:92 final size:92
Alignment explanation
Indices: 80148197--80148491 Score: 439
Period size: 92 Copynumber: 3.2 Consensus size: 92
80148187 ATGAAATATG
* * * **
80148197 TAAGACCATGGTTGAATGATACCATTGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
80148262 TACCATGGCAACATGACATGAAAAGAA
66 TACCATGGCAACATGACATGAAAAGAA
* **
80148289 TAAGGCCATGGTTGAAAGATACCATGGCAACATGACGGGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
* * *
80148354 TACCATGGCAGCGTGACATGAAATGAA
66 TACCATGGCAACATGACATGAAAAGAA
* *
80148381 TAAGACCATGGTTGAAAGATACCATGGTAACATGACATGAAAAGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
*
80148446 TACCATGGCAACATGACA-GAAAATGAG
66 TACCATGGCAACATGACATGAAAA-GAA
*
80148473 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
80148492 CACTATGACA
Statistics
Matches: 181, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
91 4 0.02
92 177 0.98
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAAAGAA
Found at i:80148437 original size:138 final size:138
Alignment explanation
Indices: 80148197--80148491 Score: 473
Period size: 138 Copynumber: 2.1 Consensus size: 138
80148187 ATGAAATATG
* * * **
80148197 TAAGACCATGGTTGAATGATACCATTGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
* *
80148262 TACCATGGCAACATGACATGAAAAGAATAAGGCCATGGTTGAAAGATACCATGGCAACATGACGG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
80148327 GAAATGAA
131 AAAATGAA
* *
80148335 TAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
*
80148400 TACCATGGTAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
*
80148465 AAAATGAG
131 AAAATGAA
*
80148473 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
80148492 CACTATGACA
Statistics
Matches: 144, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
138 144 1.00
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAG
AAAATGAA
Found at i:80152441 original size:21 final size:21
Alignment explanation
Indices: 80152411--80152461 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
80152401 AAAGATAATA
80152411 AGTATCGATACTTTT-TAAATG
1 AGTATCGATA-TTTTCTAAATG
* *
80152432 AGTATTGATATTTTCTAAA-A
1 AGTATCGATATTTTCTAAATG
80152452 AGTATCGATA
1 AGTATCGATA
80152462 AAATAGTACC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (21 bp):
AGTATCGATATTTTCTAAATG
Found at i:80152455 original size:20 final size:21
Alignment explanation
Indices: 80152407--80152461 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
80152397 TTAAAAAGAT
80152407 AATAAGTATCGATACTTTTTA
1 AATAAGTATCGATACTTTTTA
* *
80152428 AATGAGTATTGATA-TTTTCTA
1 AATAAGTATCGATACTTTT-TA
80152449 AA-AAGTATCGATA
1 AATAAGTATCGATA
80152462 AAATAGTACC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (21 bp):
AATAAGTATCGATACTTTTTA
Found at i:80152727 original size:20 final size:20
Alignment explanation
Indices: 80152683--80152727 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
80152673 AGGCATTCAA
80152683 CAAAAATTAGACAAAATAAG
1 CAAAAATTAGACAAAATAAG
* *
80152703 TAAAAATTAGAC-TAATAATG
1 CAAAAATTAGACAAAATAA-G
80152723 CAAAA
1 CAAAA
80152728 TCAACTGCCC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.62, C:0.09, G:0.09, T:0.20
Consensus pattern (20 bp):
CAAAAATTAGACAAAATAAG
Found at i:80155317 original size:6 final size:6
Alignment explanation
Indices: 80155297--80155330 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
80155287 ATGTGCCGAA
*
80155297 TACTGT TACTGGT TACTGT TACCGT TACTGT TAC
1 TACTGT TACT-GT TACTGT TACTGT TACTGT TAC
80155331 CGATTTGGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (6 bp):
TACTGT
Found at i:80155597 original size:17 final size:19
Alignment explanation
Indices: 80155554--80155604 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 19
80155544 AAAGATCGAC
80155554 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAATTTAAT
* *
80155573 TGTTACTGTAT-ATTTGAT
1 TGTTACTGAATAATTTAAT
80155591 T-TTACTGAATAATT
1 TGTTACTGAATAATT
80155605 GACTGCTACT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 8 0.29
18 10 0.36
19 10 0.36
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.51
Consensus pattern (19 bp):
TGTTACTGAATAATTTAAT
Found at i:80155606 original size:17 final size:18
Alignment explanation
Indices: 80155554--80155606 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
80155544 AAAGATCGAC
*
80155554 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAA-TTGAT
* *
80155573 TGTTACTGTATATTTGAT
1 TGTTACTGAATAATTGAT
80155591 T-TTACTGAATAATTGA
1 TGTTACTGAATAATTGA
80155607 CTGCTACTAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
17 13 0.45
18 5 0.17
19 11 0.38
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.49
Consensus pattern (18 bp):
TGTTACTGAATAATTGAT
Done.