Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 236 of 345
Found at i:80160335 original size:17 final size:17
Alignment explanation
Indices: 80160281--80160339 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
80160271 TTATGCTAAA
*
80160281 AGAAAGTTAAAGACAAT
1 AGAAAGCTAAAGACAAT
* * * * *
80160298 AGAAAACCATAGAAAAA
1 AGAAAGCTAAAGACAAT
80160315 AGAAAGCTAAAGACAAT
1 AGAAAGCTAAAGACAAT
80160332 AG-AAGCTA
1 AGAAAGCTA
80160340 CAGAAAACTA
Statistics
Matches: 31, Mismatches: 11, Indels: 1
0.72 0.26 0.02
Matches are distributed among these distances:
16 6 0.19
17 25 0.81
ACGTcount: A:0.61, C:0.10, G:0.17, T:0.12
Consensus pattern (17 bp):
AGAAAGCTAAAGACAAT
Found at i:80160571 original size:13 final size:13
Alignment explanation
Indices: 80160553--80160577 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80160543 GTTTATAAGA
80160553 TTACATAATCAAT
1 TTACATAATCAAT
80160566 TTACATAATCAA
1 TTACATAATCAA
80160578 ATCCAATCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:80161032 original size:16 final size:17
Alignment explanation
Indices: 80160994--80161034 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
80160984 AGAGTAAACC
*
80160994 CTCTCTTTATTTATTTT
1 CTCTTTTTATTTATTTT
*
80161011 AT-TTTTTATTT-TTTT
1 CTCTTTTTATTTATTTT
80161026 CTCTTTTTA
1 CTCTTTTTA
80161035 AAATAAGCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
15 5 0.25
16 14 0.70
17 1 0.05
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (17 bp):
CTCTTTTTATTTATTTT
Found at i:80168686 original size:10 final size:10
Alignment explanation
Indices: 80168671--80168699 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
80168661 TTTAATAAAA
80168671 TTTTTTCAAT
1 TTTTTTCAAT
80168681 TTTTTTCAAT
1 TTTTTTCAAT
80168691 TTTTTTCAA
1 TTTTTTCAA
80168700 ACACTTACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTTCAAT
Found at i:80171741 original size:53 final size:53
Alignment explanation
Indices: 80171678--80171785 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
80171668 GGGATGTTTA
*
80171678 TATGAAAACTCATTGTCATACATGACCGAGTTTTGCATTTGCTAATTAAATGC
1 TATGAAAACTCATTGTCATACATGACCGAGTTTTGCATTTGCTAATTAAACGC
*
80171731 TATGAAAACTCATTGTCATACATGACCGAGTTTTGCATTTGCTGATTAAACGC
1 TATGAAAACTCATTGTCATACATGACCGAGTTTTGCATTTGCTAATTAAACGC
80171784 TA
1 TA
80171786 CTTCAACTTC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (53 bp):
TATGAAAACTCATTGTCATACATGACCGAGTTTTGCATTTGCTAATTAAACGC
Found at i:80172353 original size:21 final size:21
Alignment explanation
Indices: 80172320--80172365 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
80172310 TTTCTTTGTA
* *
80172320 CTCACTCTCTTTTTGCTCACT
1 CTCAATCTATTTTTGCTCACT
* *
80172341 CTCAATCTATTTTTTCTCTCT
1 CTCAATCTATTTTTGCTCACT
80172362 CTCA
1 CTCA
80172366 TTTTCTGATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.13, C:0.35, G:0.02, T:0.50
Consensus pattern (21 bp):
CTCAATCTATTTTTGCTCACT
Found at i:80174894 original size:45 final size:45
Alignment explanation
Indices: 80174787--80174894 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 45
80174777 TTTGATCTCA
*
80174787 TTGAGTTGGTCCGAGTTCGTGATATATGTGAGAAAACAAAACTTG
1 TTGAGTTGATCCGAGTTCGTGATATATGTGAGAAAACAAAACTTG
* * * * *
80174832 TTGAGTTGGA-CCAAGTTCGTGATATATGTGA-AGCATCCAAGCTTG
1 TTGAGTT-GATCCGAGTTCGTGATATATGTGAGA-AAACAAAACTTG
*
80174877 TTGACTTGATCCGAGTTC
1 TTGAGTTGATCCGAGTTC
80174895 ATTATGGATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
44 3 0.06
45 48 0.92
46 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (45 bp):
TTGAGTTGATCCGAGTTCGTGATATATGTGAGAAAACAAAACTTG
Found at i:80177022 original size:26 final size:26
Alignment explanation
Indices: 80176941--80177015 Score: 150
Period size: 26 Copynumber: 2.9 Consensus size: 26
80176931 TGATAAAAAT
80176941 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
80176967 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
80176993 TGATAATGGGTTAGGTAAATGTT
1 TGATAATGGGTTAGGTAAATGTT
80177016 CTATGATGGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.31, C:0.03, G:0.28, T:0.39
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:80178704 original size:27 final size:27
Alignment explanation
Indices: 80178603--80178705 Score: 129
Period size: 27 Copynumber: 3.8 Consensus size: 27
80178593 AGGAAACGTC
* *
80178603 CTGGTGGCTATGCCACAAATATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
80178630 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
80178657 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
80178685 CTGGTGACTCTGTCACATTAT
1 CTGGTGGCTCTGCCACATTAT
80178706 ATATTCTGGC
Statistics
Matches: 68, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
26 1 0.01
27 50 0.74
28 17 0.25
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:80178713 original size:54 final size:54
Alignment explanation
Indices: 80178603--80178714 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
80178593 AGGAAACGTC
* * *
80178603 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATATATT
* * * *
80178657 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATATATT
1 CTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATATATT
80178711 CTGG
1 CTGG
80178715 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATATATT
Found at i:80182937 original size:5 final size:5
Alignment explanation
Indices: 80182927--80182954 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
80182917 CTGTGTGTTC
80182927 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
80182955 TCACAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:80187345 original size:5 final size:5
Alignment explanation
Indices: 80187335--80187367 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
80187325 CTGTATGTTC
80187335 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
80187368 TCACAAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:80197302 original size:104 final size:104
Alignment explanation
Indices: 80197122--80197345 Score: 360
Period size: 104 Copynumber: 2.2 Consensus size: 104
80197112 TGTATATAAA
** * * *
80197122 AGGGGTTGCTGTGTGTTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
*
80197187 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGATGCTATGTGCTGATTCCCCCG
* *
80197226 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
80197290 TTGAAATGTGAAAGGGGGATGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGATGCTATGTGCTGATTCCCCCG
80197330 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
80197346 GATATCCATT
Statistics
Matches: 111, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
104 110 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGATGCTATGTGCTGATTCCCCCG
Found at i:80197398 original size:71 final size:72
Alignment explanation
Indices: 80197264--80197415 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
80197254 TCATTGGTGG
* *
80197264 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGATGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGATGCTATGTGCTGATTCCCCC
80197329 GAGGGGT
66 GAGGGGT
*** *
80197336 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGATGCTATGTGCTGATTCCCCC
80197400 GAGGGGT
66 GAGGGGT
80197407 TGCTAAGTG
1 TGCTAAGTG
80197416 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 44 0.59
72 30 0.41
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGATGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:80199721 original size:16 final size:16
Alignment explanation
Indices: 80199700--80199733 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
80199690 TCTATAGGTA
80199700 TAAATTCTTCCACTCT
1 TAAATTCTTCCACTCT
80199716 TAAATTCTTCCACTCT
1 TAAATTCTTCCACTCT
80199732 TA
1 TA
80199734 TTAAAATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.44
Consensus pattern (16 bp):
TAAATTCTTCCACTCT
Found at i:80205371 original size:48 final size:48
Alignment explanation
Indices: 80205309--80205632 Score: 231
Period size: 48 Copynumber: 6.8 Consensus size: 48
80205299 TGATATATGT
* * * *
80205309 GCCAGTGTTAGACCATGTCTAGGACATGGAATCGGCCACGATATGAGA
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGA
* * * * * * *
80205357 ACCAATGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGA
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGA
* * * * * **
80205405 GTCAATGTAAGACCATGCCTGGGACATGGCATC-GACATTGAGACAAGA
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGA
* * * * * *
80205453 GCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGA
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGA
* * * * * * *
80205501 GCCAGTGTAAAACCATGTTTGGGACATGGTATCGGCATTAAGACA--AGA
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGC--CACGATATGAGA
* * * * * *
80205549 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCGACATGTGA
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGA
* * * *
80205597 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
80205633 AATTCACTCT
Statistics
Matches: 218, Mismatches: 52, Indels: 12
0.77 0.18 0.04
Matches are distributed among these distances:
46 4 0.02
47 2 0.01
48 206 0.94
49 2 0.01
50 4 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGA
Found at i:80205576 original size:144 final size:144
Alignment explanation
Indices: 80205312--80205632 Score: 360
Period size: 144 Copynumber: 2.2 Consensus size: 144
80205302 TATATGTGCC
* * * * * *
80205312 AGTGTTAGACCATGTCTAGGACATGGAATCGGCCACGATATGAGAACCAATGTAAGACCATGTTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGACATGAGAACCAATGTAAAACCATGTTT
* ** *
80205377 GGAACATGGCATCGGCGATGTTGTGAGAGTCAATGTAAGACCATGCCTGGGACATGGCATCGACA
66 GGAACATGGCATCGGCGATGTAGCAAGAGTCAATGTAAGACCATGCCTGGAACATGGCATCGACA
* *
80205442 TTGAGACAAGAGCT
131 TCGACACAAGAGCT
* * * *
80205456 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAAACCATGTTT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGACATGAGAACCAATGTAAAACCATGTTT
* * * *
80205521 GGGACATGGTATCGGC-AT-TAAGACAAGAG-CTAGTGTAAGACCATGTCTGGAACATGGCATCG
66 GGAACATGGCATCGGCGATGT-AG-CAAGAGTC-AATGTAAGACCATGCCTGGAACATGGCATCG
* * ***
80205583 GCCTCGACATGTGAGCT
128 ACATCGACACAAGAGCT
*
80205600 AGTGTAAGACCATGTTTGGAACATGGCATCGGC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGC
80205633 AATTCACTCT
Statistics
Matches: 148, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
142 1 0.01
143 4 0.03
144 143 0.97
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (144 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGACATGAGAACCAATGTAAAACCATGTTT
GGAACATGGCATCGGCGATGTAGCAAGAGTCAATGTAAGACCATGCCTGGAACATGGCATCGACA
TCGACACAAGAGCT
Found at i:80205631 original size:96 final size:96
Alignment explanation
Indices: 80205362--80205633 Score: 370
Period size: 96 Copynumber: 2.8 Consensus size: 96
80205352 TGAGAACCAA
** * * **
80205362 TGTAAGACCATGTTTGGAACATGGCATCGG---CGATGTTGTGAGAGTCAATGTAAGACCATGCC
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCTCGA-CATGTGAG-CT-AGTGTAAGACCATGTT
* *
80205424 TGGGACATGGCATCGACATTGAGACAAGAGCTAG
63 TGGGACATGGCATCGGCATTAAGACAAGAGCTAG
* * *
80205458 TGTAAGACCATGTTTGGGACATGGCATCGGCCTCGACATGTGAGCCAGTGTAAAACCATGTTTGG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATGTTTGG
*
80205523 GACATGGTATCGGCATTAAGACAAGAGCTAG
66 GACATGGCATCGGCATTAAGACAAGAGCTAG
*
80205554 TGTAAGACCATGTCTGGAACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATGTTTGG
1 TGTAAGACCATGTTTGGAACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATGTTTGG
*
80205619 AACATGGCATCGGCA
66 GACATGGCATCGGCA
80205634 ATTCACTCTC
Statistics
Matches: 155, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
96 146 0.94
98 6 0.04
99 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (96 bp):
TGTAAGACCATGTTTGGAACATGGCATCGGCCTCGACATGTGAGCTAGTGTAAGACCATGTTTGG
GACATGGCATCGGCATTAAGACAAGAGCTAG
Found at i:80221427 original size:20 final size:20
Alignment explanation
Indices: 80221385--80221427 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
80221375 GGGAGCAGTT
* * *
80221385 TTTCAATTGATTTAGAAATG
1 TTTCAATTGAGTTAAAAAAG
80221405 TTTCAATTGAGTTAAAAAAG
1 TTTCAATTGAGTTAAAAAAG
80221425 TTT
1 TTT
80221428 AAACTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44
Consensus pattern (20 bp):
TTTCAATTGAGTTAAAAAAG
Found at i:80221472 original size:20 final size:21
Alignment explanation
Indices: 80221449--80221489 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
80221439 AAACTTTATC
80221449 CAAAA-ATTTTTCTAAG-TGTT
1 CAAAACATTTTT-TAAGATGTT
80221469 CAAAACATTTTTTAAGATGTT
1 CAAAACATTTTTTAAGATGTT
80221490 TGGAAGTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (21 bp):
CAAAACATTTTTTAAGATGTT
Found at i:80221561 original size:23 final size:24
Alignment explanation
Indices: 80221529--80221573 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
80221519 GAACTTTATA
80221529 ATTTCTTTAT-TCAAAAATATTTGT
1 ATTTCTTTATATC-AAAATATTTGT
80221553 ATTT-TTTATATCAAAATATTT
1 ATTTCTTTATATCAAAATATTT
80221574 CATCAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.56
Consensus pattern (24 bp):
ATTTCTTTATATCAAAATATTTGT
Found at i:80223864 original size:40 final size:40
Alignment explanation
Indices: 80223813--80224082 Score: 434
Period size: 40 Copynumber: 6.8 Consensus size: 40
80223803 GGATATAGCT
* *
80223813 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
**
80223853 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
80223893 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
80223933 ACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
80223973 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
80224013 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
80224053 ACTAGCACAAATGCCTTCGGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
80224083 CGTTATCATC
Statistics
Matches: 216, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.00
40 213 0.99
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:80232097 original size:93 final size:93
Alignment explanation
Indices: 80231938--80232257 Score: 317
Period size: 93 Copynumber: 3.4 Consensus size: 93
80231928 GTTATGTGAG
* * * *
80231938 AGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATAGAGATGAGAGCTAGTGTAAGACATG
*
80232003 TCTAGGACGTGCATC-GCCACATTATAAT
65 TCTAGGACATGCATCGGCCACATTATAAT
* * * * *
80232031 AGCCAGCGTAAGACCATGTCTGGGACATAGTATCGGCATAGAGATGAGCGCCAGTATAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATAGAGATGAGAGCTAGTGTAAGACATG
* ** * * *
80232096 TCTGGGACATGCATCGGTTA-AGTGTAGT
65 TCTAGGACATGCATCGGCCACATTATAAT
* * * *
80232124 -GCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCACGTACATATGAGAGCTAGTGTAAGACCA
1 AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCA--TAGAGATGAGAGCTAGTGTAAGA-CA
* *
80232187 TGTCTAGGACATGGCATCGGCCTCGATGA-AGAT
63 TGTCTAGGACAT-GCATCGGCCAC-ATTATA-AT
*
80232220 AGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCA
1 AGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCA
80232258 ACTTAACCCA
Statistics
Matches: 180, Mismatches: 36, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
90 7 0.04
91 14 0.08
92 28 0.16
93 87 0.48
94 9 0.05
95 1 0.01
96 2 0.01
97 11 0.06
98 14 0.08
99 7 0.04
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (93 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGCATCGGCATAGAGATGAGAGCTAGTGTAAGACATGT
CTAGGACATGCATCGGCCACATTATAAT
Found at i:80232198 original size:49 final size:48
Alignment explanation
Indices: 80231935--80232248 Score: 170
Period size: 48 Copynumber: 6.7 Consensus size: 48
80231925 TGGGTTATGT
* * * * * *
80231935 GAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GAC
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTCGATGAA
* * * * *
80231983 GAGGGCTAGTGTAAGA-CATGTCTAGGACGTGCATC-GCCAC-ATTATA
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGATGA-A
* * * * * * * *
80232029 -ATAGCCAGCGTAAGACCATGTCTGGGACATAGTATCGGCATAGA-GAT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTCGATGAA
* * * * **
80232076 GAGCGCCAGTATAAGA-CATGTCTGGGACATGCATC-G-GTTAAGTG--
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGA-TGAA
* * *
80232120 TAGTGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCACGTAC-AT-AT
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCAGC-C-T-CGATGAA
* *
80232168 GAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATGAA
1 GAGAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCAGCCTCGATGAA
* *
80232217 GATAGCCAGTGTAAGACCATGTCTGGGACATG
1 GAGAGCTAGTGTAAGACCATGTCTGGGACATG
80232249 GCATTGGCAA
Statistics
Matches: 202, Mismatches: 44, Indels: 40
0.71 0.15 0.14
Matches are distributed among these distances:
44 34 0.17
45 16 0.08
46 22 0.11
47 32 0.16
48 47 0.23
49 44 0.22
50 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (48 bp):
GAGAGCTAGTGTAAGACCATGTCTGGGACATGCATCAGCCTCGATGAA
Found at i:80232206 original size:140 final size:140
Alignment explanation
Indices: 80231935--80232248 Score: 350
Period size: 140 Copynumber: 2.2 Consensus size: 140
80231925 TGGGTTATGT
* * *
80231935 GAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGAC
1 GAGAGCCAGTATAAGACCATGTCTGGGACAT-GCATCGG-ATTAAGACGAGGGCTAGTGTAAGAC
* * * *
80232000 ATGTCTAGGACGTGCATCGCCACATTATAATAGCCAGCGTAAGACCATGTCTGGGACATAGTATC
64 ATGTCTAGGACATGCATCGCCACATTATAAGAGCCAGCGTAAGACCATGTCTAGGACATAGCATC
*
80232065 GGCATAGA-GAT
129 GGCATAGATGAA
* * *
80232076 GAGCGCCAGTATAAGA-CATGTCTGGGACATGCATCGG-TTAAG-TGTAGTGCTAGTGTAAGACA
1 GAGAGCCAGTATAAGACCATGTCTGGGACATGCATCGGATTAAGACG-AGGGCTAGTGTAAGACA
* * * * *
80232138 TGTCTGGGACATGCATCAGCACGTACA-TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGC
65 TGTCTAGGACATGCATC-GC-C--ACATTATAAGAGCCAGCGTAAGACCATGTCTAGGACATAGC
* *
80232202 ATCGGCCTCGATGAA
126 ATCGGCATAGATGAA
* *
80232217 GATAGCCAGTGTAAGACCATGTCTGGGACATG
1 GAGAGCCAGTATAAGACCATGTCTGGGACATG
80232249 GCATTGGCAA
Statistics
Matches: 145, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
136 1 0.01
137 35 0.24
138 2 0.01
139 8 0.06
140 53 0.37
141 31 0.21
142 15 0.10
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.22
Consensus pattern (140 bp):
GAGAGCCAGTATAAGACCATGTCTGGGACATGCATCGGATTAAGACGAGGGCTAGTGTAAGACAT
GTCTAGGACATGCATCGCCACATTATAAGAGCCAGCGTAAGACCATGTCTAGGACATAGCATCGG
CATAGATGAA
Found at i:80235849 original size:18 final size:18
Alignment explanation
Indices: 80235826--80235862 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
80235816 GCCTTCTTCC
80235826 AAATGATGAATGAACGGT
1 AAATGATGAATGAACGGT
*
80235844 AAATGATGAATGAAGGGT
1 AAATGATGAATGAACGGT
80235862 A
1 A
80235863 TTCTAAGTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.30, T:0.22
Consensus pattern (18 bp):
AAATGATGAATGAACGGT
Found at i:80236770 original size:31 final size:29
Alignment explanation
Indices: 80236735--80236801 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
80236725 ATCTCAAAAC
*
80236735 TATACATAAACTATGGTTTAATGTGCAATTG
1 TATACATAAACTATGATTT--TGTGCAATTG
* * *
80236766 TATACATGAACTTTGATTTTGTGCAATTT
1 TATACATAAACTATGATTTTGTGCAATTG
80236795 TATACAT
1 TATACAT
80236802 GAAATTTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (29 bp):
TATACATAAACTATGATTTTGTGCAATTG
Found at i:80236791 original size:29 final size:30
Alignment explanation
Indices: 80236756--80236814 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
80236746 TATGGTTTAA
80236756 TGTGCAATTGTATACATG-AACTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
* *
80236785 TGTGCAATTTTATACATGAAATTTTGATTT
1 TGTGCAATTGTATACATGAAACTTTGATTT
80236815 GATCCAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 17 0.63
30 10 0.37
ACGTcount: A:0.29, C:0.08, G:0.15, T:0.47
Consensus pattern (30 bp):
TGTGCAATTGTATACATGAAACTTTGATTT
Found at i:80236823 original size:30 final size:29
Alignment explanation
Indices: 80236760--80236823 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
80236750 GTTTAATGTG
*
80236760 CAATTGTATACATGAACTTTGATTTTGTG
1 CAATTGTATACATGAACTTTGATTTTGTC
* *
80236789 CAATTTTATACATGAAATTTTGA-TTTGATC
1 CAATTGTATACATG-AACTTTGATTTTG-TC
80236819 CAATT
1 CAATT
80236824 CTTGTAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.45
Consensus pattern (29 bp):
CAATTGTATACATGAACTTTGATTTTGTC
Found at i:80237030 original size:29 final size:30
Alignment explanation
Indices: 80236958--80237043 Score: 93
Period size: 31 Copynumber: 2.9 Consensus size: 30
80236948 TAAGTAAAAT
* * * *
80236958 TTAAAGTTTCAAGTATACATTTGAACCTCAA
1 TTAAAGTTTCATGTATACAATTGCACC-GAA
* * *
80236989 TTAGAGTTTCATGTTTATAATTGCACCGAA
1 TTAAAGTTTCATGTATACAATTGCACCGAA
80237019 TTAAAG-TTCATGTATACAATTGCAC
1 TTAAAGTTTCATGTATACAATTGCAC
80237044 AATAAATCAA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
29 17 0.38
30 7 0.16
31 21 0.47
ACGTcount: A:0.35, C:0.15, G:0.13, T:0.37
Consensus pattern (30 bp):
TTAAAGTTTCATGTATACAATTGCACCGAA
Found at i:80238860 original size:40 final size:37
Alignment explanation
Indices: 80238756--80238854 Score: 135
Period size: 37 Copynumber: 2.6 Consensus size: 37
80238746 CAATTTCCTC
* *
80238756 AAATCAAACCCTCAAATTCATTCTTCTTCAAAAATCCCT
1 AAATTAAACCCTC-CATTC-TTCTTCTTCAAAAATCCCT
* *
80238795 AAATTAAATCCTCCATTCTTCTTCTTCAAAAATCTCT
1 AAATTAAACCCTCCATTCTTCTTCTTCAAAAATCCCT
*
80238832 AAATTAAACCCTCCATTTTTCTT
1 AAATTAAACCCTCCATTCTTCTT
80238855 TTTCTTCGTC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
37 39 0.72
38 4 0.07
39 11 0.20
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.37
Consensus pattern (37 bp):
AAATTAAACCCTCCATTCTTCTTCTTCAAAAATCCCT
Found at i:80240076 original size:19 final size:20
Alignment explanation
Indices: 80240032--80240078 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
80240022 TTGAAATGTG
80240032 TAAAAAATATATATAAAAAT
1 TAAAAAATATATATAAAAAT
* **
80240052 T-CAAAATATAT-TAAATTT
1 TAAAAAATATATATAAAAAT
80240070 TAAAAAATA
1 TAAAAAATA
80240079 AAAATATTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
18 6 0.27
19 15 0.68
20 1 0.05
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
TAAAAAATATATATAAAAAT
Found at i:80249413 original size:43 final size:42
Alignment explanation
Indices: 80249333--80249414 Score: 121
Period size: 45 Copynumber: 1.9 Consensus size: 42
80249323 AATTCTATCT
80249333 AAAAATATCATAGATGTTTGAAAATATATTGTATGAGATTTAA
1 AAAAATATCATAGATGTTTGAAAATATATTG-ATGAGATTTAA
*
80249376 AAAAATTATCAATAGATGTTTGAAAATATCTTG-TGAGAT
1 AAAAA-TATC-ATAGATGTTTGAAAATATATTGATGAGAT
80249415 CTTCAGAATC
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
43 11 0.31
44 4 0.11
45 21 0.58
ACGTcount: A:0.45, C:0.04, G:0.15, T:0.37
Consensus pattern (42 bp):
AAAAATATCATAGATGTTTGAAAATATATTGATGAGATTTAA
Found at i:80259370 original size:28 final size:26
Alignment explanation
Indices: 80259324--80259375 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
80259314 ATTATAATGA
* *
80259324 AAAATTGACATGTAGTAAAGTATATT
1 AAAAGTGACATGTAGTAAAATATATT
80259350 AAAAGTGACATGTCATGTAAAATATA
1 AAAAGTGACATGT-A-GTAAAATATA
80259376 AAATATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.55
27 1 0.05
28 9 0.41
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.31
Consensus pattern (26 bp):
AAAAGTGACATGTAGTAAAATATATT
Found at i:80266663 original size:16 final size:15
Alignment explanation
Indices: 80266628--80266663 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
80266618 ACCCTTTTAA
80266628 AAAAAACCTTAAATT
1 AAAAAACCTTAAATT
*
80266643 CAAAAACCTTAAACTT
1 AAAAAACCTTAAA-TT
80266659 AAAAA
1 AAAAA
80266664 TATTAAAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.61, C:0.17, G:0.00, T:0.22
Consensus pattern (15 bp):
AAAAAACCTTAAATT
Found at i:80266679 original size:24 final size:24
Alignment explanation
Indices: 80266644--80266706 Score: 108
Period size: 24 Copynumber: 2.6 Consensus size: 24
80266634 CCTTAAATTC
*
80266644 AAAAACCTTAAACTTAAAAATATT
1 AAAAACCCTAAACTTAAAAATATT
*
80266668 AAAACCCCTAAACTTAAAAATATT
1 AAAAACCCTAAACTTAAAAATATT
80266692 AAAAACCCTAAACTT
1 AAAAACCCTAAACTT
80266707 GGGAGAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.56, C:0.19, G:0.00, T:0.25
Consensus pattern (24 bp):
AAAAACCCTAAACTTAAAAATATT
Found at i:80280602 original size:37 final size:37
Alignment explanation
Indices: 80280561--80280634 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
80280551 TCCTTTACAC
*
80280561 ATAGG-CTCAGAATATGGGCATTTGTTCTTGTGTTTGT
1 ATAGGCCT-AGAATATAGGCATTTGTTCTTGTGTTTGT
80280598 ATAGGCCTAGAATATAGGCATTTGTTCTTGTGTTTGT
1 ATAGGCCTAGAATATAGGCATTTGTTCTTGTGTTTGT
80280635 GCCAAGTCTG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 33 0.94
38 2 0.06
ACGTcount: A:0.20, C:0.11, G:0.26, T:0.43
Consensus pattern (37 bp):
ATAGGCCTAGAATATAGGCATTTGTTCTTGTGTTTGT
Found at i:80301258 original size:43 final size:42
Alignment explanation
Indices: 80301165--80301321 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 42
80301155 GGTTATCGAG
*
80301165 ATGTGATTACATGA-AAGACCATGTCTGGGACATTGGCATTGT
1 ATGTGATTACAT-ATAAGACCATGTCTGGGACATTGGCATCGT
* *
80301207 ATTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTT
1 A-TGTGATTACATATAAGACCATGTCTGGGACATTGGCATCG-T
* * * * * * *
80301251 ATATGATTTCGTATAAGACCCTGTCTAGGAAAGTGGCATCGAT
1 ATGTGATTACATATAAGACCATGTCTGGGACATTGGCATCG-T
* *
80301294 ATGTGATAACATATAAGACCATATCTGG
1 ATGTGATTACATATAAGACCATGTCTGG
80301322 CATTGTATTG
Statistics
Matches: 94, Mismatches: 18, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
42 1 0.01
43 91 0.97
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
ATGTGATTACATATAAGACCATGTCTGGGACATTGGCATCGT
Found at i:80310998 original size:25 final size:25
Alignment explanation
Indices: 80310970--80311029 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
80310960 AACCAAATCG
* *
80310970 AGCCTTTGTGGCGAGTTA-CTTGTAA
1 AGCCTTTGTGGAGAGTTATC-TATAA
*
80310995 AGCCTTTATGGAGAGTTATCTATAA
1 AGCCTTTGTGGAGAGTTATCTATAA
80311020 AGCCTTTGTG
1 AGCCTTTGTG
80311030 ACGAATTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 29 0.97
26 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (25 bp):
AGCCTTTGTGGAGAGTTATCTATAA
Found at i:80311038 original size:25 final size:26
Alignment explanation
Indices: 80310970--80311038 Score: 72
Period size: 25 Copynumber: 2.7 Consensus size: 26
80310960 AACCAAATCG
* *
80310970 AGCCTTTGTGGCGAGTTA-CTTGTAA
1 AGCCTTTGTGACGAGTTATCTTATAA
*
80310995 AGCCTTTATGGA-GAGTTATC-TATAA
1 AGCCTTTGT-GACGAGTTATCTTATAA
*
80311020 AGCCTTTGTGACGAATTAT
1 AGCCTTTGTGACGAGTTAT
80311039 TTGAAAAGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
24 2 0.06
25 32 0.89
26 2 0.06
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.36
Consensus pattern (26 bp):
AGCCTTTGTGACGAGTTATCTTATAA
Found at i:80311046 original size:25 final size:25
Alignment explanation
Indices: 80310970--80311046 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
80310960 AACCAAATCG
* * *
80310970 AGCCTTTGTGGCGAGTTACTTGTAA
1 AGCCTTTGTGACGAGTTATTTGAAA
* *
80310995 AGCCTTTATGGA-GAGTTATCT-ATAA
1 AGCCTTTGT-GACGAGTTATTTGA-AA
*
80311020 AGCCTTTGTGACGAATTATTTGAAA
1 AGCCTTTGTGACGAGTTATTTGAAA
80311045 AG
1 AG
80311047 ACAGTGTGGC
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
24 2 0.05
25 36 0.90
26 2 0.05
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (25 bp):
AGCCTTTGTGACGAGTTATTTGAAA
Found at i:80314728 original size:46 final size:48
Alignment explanation
Indices: 80314672--80314796 Score: 184
Period size: 48 Copynumber: 2.6 Consensus size: 48
80314662 TATATGTGCT
80314672 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-ATA-TGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATATTGA-AGCC
* * *
80314718 AGTGTAAGACATGTCAGGGACATGCATCGGCCTCGAGATATTTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATATTGAAGCC
*
80314766 AGTGTAAGACATGTCTCGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
80314797 ATTGAGACGA
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
46 32 0.45
47 1 0.01
48 36 0.51
49 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATATTGAAGCC
Found at i:80314864 original size:94 final size:94
Alignment explanation
Indices: 80314669--80314888 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 94
80314659 TGATATATGT
* *
80314669 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAATATGAGAGCCAGTGTAAGACATGTCA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACATGTCA
* ***
80314734 GGGACATGCATCGGCCTCGAGATATTTAA
66 GGGACATGCATCCGCCTCGAGATAGACAA
* * ** * *
80314763 GCCAGTGTAAGACATGTCTCGGACATGCATCGG-CATTGAGACGAGAGCTAG-GATAAGACATTT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CAAGACGAGAGCCAGTG-TAAGACATGT
*
80314826 CTA-GGACATGCATCCGCCTCGCA-ATGGACAA
64 C-AGGGACATGCATCCGCCTCG-AGATAGACAA
*
80314857 GCTAGTGTAAGACCTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
80314889 AGCTTGTTGC
Statistics
Matches: 105, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
93 3 0.03
94 95 0.90
95 7 0.07
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACATGTCA
GGGACATGCATCCGCCTCGAGATAGACAA
Found at i:80314869 original size:48 final size:47
Alignment explanation
Indices: 80314669--80314888 Score: 134
Period size: 48 Copynumber: 4.7 Consensus size: 47
80314659 TGATATATGT
* * * * *
80314669 GCTAGTGTAAGACATGTCTGGGACATGCAT-CGGCCACAATATGA-GA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCCGCCCGCAAT-GGACAA
* * ****
80314715 GCCAGTGTAAGACATGTC-AGGGACATGCATCGGCCTCG-AGATATTTAA
1 GCTAGTGTAAGACATGTCTA-GGACATGCATCCGCC-CGCA-ATGGACAA
* * *
80314763 GCCAGTGTAAGACATGTCTCGGACATGCAT-CG---GCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCCGCCCGCAATG-GAC-A-A
*
80314809 GCTAG-GATAAGACATTTCTAGGACATGCATCCGCCTCGCAATGGACAA
1 GCTAGTG-TAAGACATGTCTAGGACATGCATCCGCC-CGCAATGGACAA
* *
80314857 GCTAGTGTAAGACCTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTAGGACAT-GCATC
80314889 AGCTTGTTGC
Statistics
Matches: 133, Mismatches: 23, Indels: 33
0.70 0.12 0.17
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 2 0.02
46 53 0.40
47 6 0.05
48 54 0.41
49 7 0.05
50 3 0.02
51 5 0.04
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.22
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCCGCCCGCAATGGACAA
Found at i:80314916 original size:44 final size:44
Alignment explanation
Indices: 80314860--80314976 Score: 216
Period size: 44 Copynumber: 2.7 Consensus size: 44
80314850 TGGACAAGCT
80314860 AGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGTTGCGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGTTGCGTGTC
* *
80314904 AGTGTAAGACCTGTCTAGGACATGGCGTCAGCTTGTTGCGTGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGTTGCGTGTC
80314948 AGTGTAAGACCTGTCTGGGACATGGCATC
1 AGTGTAAGACCTGTCTGGGACATGGCATC
80314977 GACACTGATA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.20, C:0.21, G:0.32, T:0.28
Consensus pattern (44 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCTTGTTGCGTGTC
Found at i:80316243 original size:20 final size:21
Alignment explanation
Indices: 80316199--80316243 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
80316189 AGGCATTTTT
80316199 CCCTTCCACACGGGCGTGTTG
1 CCCTTCCACACGGGCGTGTTG
*
80316220 CCCTTCCACACGGGTGTG-TG
1 CCCTTCCACACGGGCGTGTTG
80316240 CCCT
1 CCCT
80316244 GTTTCAAGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.09, C:0.40, G:0.27, T:0.24
Consensus pattern (21 bp):
CCCTTCCACACGGGCGTGTTG
Found at i:80321879 original size:128 final size:126
Alignment explanation
Indices: 80321622--80321945 Score: 411
Period size: 128 Copynumber: 2.6 Consensus size: 126
80321612 GAAACTCCTC
* * *
80321622 AAAACAAGGCAATATTATGTGTTTGGAAATTCGAGAAATTGTGCCCTAACGTGCTGGGTTTCGAT
1 AAAACAAGGCAATATTTTGTGTTTGGAAATTCGAGAAATCGTGCCCTAACATGCTGGGTTTCGAT
* * * * * *
80321687 TTTCCGTTTGACCAAATAACTAAGTATCCTTTTAAAATTTCGTCTATGTTTTCTTAAATTAA
66 TTTTCGTTTGACCAAACAACCAAATACCCTTTTAAAATTTCGTATATGTTTTCTTAAA-TAA
*
80321749 AAAACAAGGCAATATTTTGTGTTTTGGAAATTCGAGAAATCGTGCCCTAACATGCTGGGTTTTGA
1 AAAACAAGGCAATATTTTGTG-TTTGGAAATTCGAGAAATCGTGCCCTAACATGCTGGGTTTCGA
* * *
80321814 TTTTTCGTTTGACCAAACGACCAAATACCCTTTTTAAAATCTT-GTATGTGTTTTCTT-CATAA
65 TTTTTCGTTTGACCAAACAACCAAATACCC-TTTTAAAAT-TTCGTATATGTTTTCTTAAATAA
** * * * *
80321876 AAAA-GGGCGCAATATTTCGTGTTTGGAAATTCGAGAAATCGTGCCCTAACTTACTGGGTTTCAA
1 AAAACAAG-GCAATATTTTGTGTTTGGAAATTCGAGAAATCGTGCCCTAACATGCTGGGTTTCGA
80321940 TTTTTC
65 TTTTTC
80321946 TTGTTTAACC
Statistics
Matches: 173, Mismatches: 20, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
126 46 0.27
127 39 0.23
128 65 0.38
129 21 0.12
130 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (126 bp):
AAAACAAGGCAATATTTTGTGTTTGGAAATTCGAGAAATCGTGCCCTAACATGCTGGGTTTCGAT
TTTTCGTTTGACCAAACAACCAAATACCCTTTTAAAATTTCGTATATGTTTTCTTAAATAA
Found at i:80324668 original size:111 final size:110
Alignment explanation
Indices: 80324544--80324772 Score: 422
Period size: 111 Copynumber: 2.1 Consensus size: 110
80324534 AAAAGGCTAT
*
80324544 CATTTTTTTAAAAAAAAAGATTAAGCTAATTTTTTGTTAAGGTTTTATTTTTCTTATTTTCTTTT
1 CATTTTTTAAAAAAAAAAGATTAAGCTAATTTTTTGTTAAGGTTTTATTTTTCTTATTTTCTTTT
80324609 TCACTCTTCCTCCTTTCTTTGTCGTCCCTTATTTGTTTTCCCTCAC
66 TCACTCTTCCTCCTTTCTTTGTCGTCCCTTATTT-TTTTCCCTCAC
*
80324655 CATTTTTTAAAAAAAAAAGATTAAGTTAATTTTTTGTTAAGGTTTTATTTTTCTTATTTTCTTTT
1 CATTTTTTAAAAAAAAAAGATTAAGCTAATTTTTTGTTAAGGTTTTATTTTTCTTATTTTCTTTT
80324720 TCACTCTTCCTCCTTTCTTTGTCGTCCCTTATTTTTTTCCCTCAC
66 TCACTCTTCCTCCTTTCTTTGTCGTCCCTTATTTTTTTCCCTCAC
*
80324765 CTTTTTTT
1 CATTTTTT
80324773 TTCTCTCCAT
Statistics
Matches: 115, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
110 18 0.16
111 97 0.84
ACGTcount: A:0.20, C:0.18, G:0.07, T:0.55
Consensus pattern (110 bp):
CATTTTTTAAAAAAAAAAGATTAAGCTAATTTTTTGTTAAGGTTTTATTTTTCTTATTTTCTTTT
TCACTCTTCCTCCTTTCTTTGTCGTCCCTTATTTTTTTCCCTCAC
Found at i:80324788 original size:17 final size:18
Alignment explanation
Indices: 80324748--80324789 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
80324738 TTGTCGTCCC
*
80324748 TTATTTTTTTCCCTCACC
1 TTATTTTTTTCCCTCACA
*
80324766 TT-TTTTTTTCTCTC-CA
1 TTATTTTTTTCCCTCACA
80324782 TTATTTTT
1 TTATTTTT
80324790 CATTCATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 3 0.14
17 16 0.76
18 2 0.10
ACGTcount: A:0.10, C:0.24, G:0.00, T:0.67
Consensus pattern (18 bp):
TTATTTTTTTCCCTCACA
Found at i:80330455 original size:37 final size:35
Alignment explanation
Indices: 80330412--80330517 Score: 122
Period size: 37 Copynumber: 2.9 Consensus size: 35
80330402 GGATCTATAA
80330412 CTCTTCGGAGCATTTGGCGTGTTATCAGTTGGATTAG
1 CTCTTCGGAGCATTTGGCGTGTT-TC-GTTGGATTAG
* * *
80330449 CTCTTCGGAGAATTTGGTGTGTTGTCGATTCGATTAG
1 CTCTTCGGAGCATTTGGCGTGTT-TCG-TTGGATTAG
**
80330486 CTCTTATGAGCATTTGGCGTGTTTCGGTTGGA
1 CTCTTCGGAGCATTTGGCGTGTTTC-GTTGGA
80330518 CTAATTGTGT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
36 7 0.12
37 51 0.88
ACGTcount: A:0.15, C:0.15, G:0.30, T:0.40
Consensus pattern (35 bp):
CTCTTCGGAGCATTTGGCGTGTTTCGTTGGATTAG
Found at i:80331536 original size:54 final size:54
Alignment explanation
Indices: 80331419--80331538 Score: 125
Period size: 54 Copynumber: 2.2 Consensus size: 54
80331409 CGGTTTGAGG
* * * *
80331419 CACGGCCGTGTGTATTAAGTCAGTGTGTTACACAGCCTAGCACATGGCCTACGA
1 CACGGCCGTGTGTATCAAGTCAGAGAGTTACACAGCCTAGCACACGGCCTACGA
** * * * * *
80331473 CGTGACCGTGTGTCA-CAAGTTAGAGAGTTACACGGTCTAGCACACGGCCTGCGA
1 CACGGCCGTGTGT-ATCAAGTCAGAGAGTTACACAGCCTAGCACACGGCCTACGA
80331527 CACGGCCGTGTG
1 CACGGCCGTGTG
80331539 GCCCAACTCA
Statistics
Matches: 51, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
54 50 0.98
55 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.22
Consensus pattern (54 bp):
CACGGCCGTGTGTATCAAGTCAGAGAGTTACACAGCCTAGCACACGGCCTACGA
Found at i:80332802 original size:55 final size:55
Alignment explanation
Indices: 80332735--80332844 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 55
80332725 AAACATAGGC
* *
80332735 AAAATTATAAAAT-TAAAATATAGAGGCAAAACTATAAAATTCAAAAAATAGGGGA
1 AAAATTATAAAATCTAAAAAATAG-GGCAAAACTATAAAATTCAAAAAATAAGGGA
* * * *
80332790 AAAATTATAAAATCTAAAAAATAGGGGAAAATTATAAATTTTAAAAAATAAGGGA
1 AAAATTATAAAATCTAAAAAATAGGGCAAAACTATAAAATTCAAAAAATAAGGGA
80332845 CACGCAATCG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
55 39 0.81
56 9 0.19
ACGTcount: A:0.60, C:0.04, G:0.13, T:0.24
Consensus pattern (55 bp):
AAAATTATAAAATCTAAAAAATAGGGCAAAACTATAAAATTCAAAAAATAAGGGA
Found at i:80332844 original size:27 final size:27
Alignment explanation
Indices: 80332681--80332844 Score: 136
Period size: 27 Copynumber: 6.0 Consensus size: 27
80332671 AGAAGGGGAA
* * *
80332681 AAAATAATAAAATTTGGAAAAA-AAGGA
1 AAAATTATAAAATTT-AAAAAATAAGGG
* * * *
80332708 AAAACTGTAAAATTTGAAAACAT-AGGC
1 AAAATTATAAAATTT-AAAAAATAAGGG
* *
80332735 AAAATTATAAAA-TTAAAATATAGAGGC
1 AAAATTATAAAATTTAAAAAATA-AGGG
* * *
80332762 AAAACTATAAAATTCAAAAAATAGGGG
1 AAAATTATAAAATTTAAAAAATAAGGG
* *
80332789 AAAAATTATAAAATCTAAAAAATAGGGG
1 -AAAATTATAAAATTTAAAAAATAAGGG
*
80332817 AAAATTATAAATTTTAAAAAATAAGGG
1 AAAATTATAAAATTTAAAAAATAAGGG
80332844 A
1 A
80332845 CACGCAATCG
Statistics
Matches: 112, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
25 6 0.05
26 2 0.02
27 72 0.64
28 32 0.29
ACGTcount: A:0.60, C:0.04, G:0.13, T:0.23
Consensus pattern (27 bp):
AAAATTATAAAATTTAAAAAATAAGGG
Found at i:80336564 original size:45 final size:44
Alignment explanation
Indices: 80336496--80336665 Score: 234
Period size: 45 Copynumber: 3.8 Consensus size: 44
80336486 TTGGCATGAA
* * *
80336496 AAATGAATAAGACCATATTTGAAGGACATTATGGCAATATACTGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAATATAC-GG
* * *
80336541 AAACGAATAAAACCATAGTTG-AAGACACTATGGCACTATACCGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAATATA-CGG
*
80336585 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGACGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAATAT-ACGG
*
80336630 AAATGAATAAGACCATAGTTTAAAGACACTATGGCA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCA
80336666 TCATATTAGA
Statistics
Matches: 111, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
44 37 0.33
45 73 0.66
46 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.21
Consensus pattern (44 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCAATATACGG
Found at i:80336647 original size:89 final size:90
Alignment explanation
Indices: 80336496--80336665 Score: 254
Period size: 89 Copynumber: 1.9 Consensus size: 90
80336486 TTGGCATGAA
* * * *
80336496 AAATGAATAAGACCATATTTGAAGGACATTATGGCAATATACTGGAAACGAATAAAACCATAG-T
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATACTGGAAACGAATAAAACCATAGTT
*
80336560 TGAAGACACTATGGCACTATACCGG
66 TAAAGACACTATGGCACTATACCGG
* *
80336585 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGAC-GGAAATGAATAAGACCATAGT
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACAT-ACTGGAAACGAATAAAACCATAGT
80336649 TTAAAGACACTATGGCA
65 TTAAAGACACTATGGCA
80336666 TCATATTAGA
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
89 54 0.75
90 18 0.25
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.21
Consensus pattern (90 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATACTGGAAACGAATAAAACCATAGTT
TAAAGACACTATGGCACTATACCGG
Found at i:80336678 original size:45 final size:45
Alignment explanation
Indices: 80336496--80336688 Score: 207
Period size: 45 Copynumber: 4.3 Consensus size: 45
80336486 TTGGCATGAA
* * *
80336496 AAATGAATAAGACCATA-TTTGAAGGACATTATGGCAAT-ATACTGG
1 AAATGAATAAGACCATAGTTT-AAAGACACTATGGC-ATCATACCGG
* * *
80336541 AAACGAATAAAACCATAG-TTGAAGACACTATGGCA-CTATACCGG
1 AAATGAATAAGACCATAGTTTAAAGACACTATGGCATC-ATACCGG
* *
80336585 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAACATGA-CGG
1 AAATGAATAAGACCATAGTTTAAAGACACTATGGCATCAT-ACCGG
***
80336630 AAATGAATAAGACCATAGTTTAAAGACACTATGGCATCATATTAG
1 AAATGAATAAGACCATAGTTTAAAGACACTATGGCATCATACCGG
*
80336675 AAATAAATAAGACC
1 AAATGAATAAGACC
80336689 GGGGCTAAAA
Statistics
Matches: 126, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
43 1 0.01
44 34 0.27
45 89 0.71
46 2 0.02
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTTAAAGACACTATGGCATCATACCGG
Found at i:80336700 original size:90 final size:89
Alignment explanation
Indices: 80336520--80336710 Score: 206
Period size: 90 Copynumber: 2.1 Consensus size: 89
80336510 ATATTTGAAG
* * * *
80336520 GACATTATGGCAATATACTGGAAACGAATAAAACCATAGTTGAAGACACTATGGCACTATACCGG
1 GACACTATGGCAACATACTGGAAACGAATAAAACCATAGTTAAAGACACTATGGCACTATACCAG
* * * *
80336585 AAATGAATAAGACCATAGTTGAAA
66 AAATAAATAAGACCAGAGCTAAAA
* * *
80336609 GACACTATGGCAACATGAC-GGAAATGAATAAGACCATAGTTTAAAGACACTATGGCA-TCATAT
1 GACACTATGGCAACAT-ACTGGAAACGAATAAAACCATAG-TTAAAGACACTATGGCACT-ATAC
* * *
80336672 TAGAAATAAATAAGACCGGGGCTAAAA
63 CAGAAATAAATAAGACCAGAGCTAAAA
*
80336699 GACGCTATGGCA
1 GACACTATGGCA
80336711 TCCTTAAGCA
Statistics
Matches: 84, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
89 33 0.39
90 51 0.61
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.20
Consensus pattern (89 bp):
GACACTATGGCAACATACTGGAAACGAATAAAACCATAGTTAAAGACACTATGGCACTATACCAG
AAATAAATAAGACCAGAGCTAAAA
Found at i:80339159 original size:25 final size:24
Alignment explanation
Indices: 80339123--80339192 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
80339113 CTCTTTTAAT
*
80339123 AACTAGGGCAAAGCCCTTTTTGATA
1 AACT-GGGCAAAGCCCTTTTCGATA
*
80339148 AACTGGGTCAAAGCCCTTTTCGGTA
1 AACTGGG-CAAAGCCCTTTTCGATA
*
80339173 AACTGGGGCATAGCCCTTTT
1 AACT-GGGCAAAGCCCTTTT
80339193 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
24 3 0.08
25 34 0.85
26 3 0.08
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
AACTGGGCAAAGCCCTTTTCGATA
Found at i:80339611 original size:27 final size:27
Alignment explanation
Indices: 80339397--80339610 Score: 286
Period size: 27 Copynumber: 7.9 Consensus size: 27
80339387 GGAAAAATGC
* * * *
80339397 TAATTTTACCCCACAAGGGTATCTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
80339424 TAATTCTACCCTACAAGTGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
80339451 TATTTCTACCCTACAAGGGTATTTC-G
1 TAATTCTACCCTACAGGGGTATTTCAG
*
80339477 ATAATTCTACCTTACAGGGGTATTTCAG
1 -TAATTCTACCCTACAGGGGTATTTCAG
* *
80339505 TAATTCTACCTTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
80339532 TAATTCTACCCTACAGGGTTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
80339559 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
80339586 TAATTCTGCCCTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
80339611 GATATTTTAC
Statistics
Matches: 169, Mismatches: 16, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 167 0.99
28 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:80339731 original size:81 final size:80
Alignment explanation
Indices: 80339599--80339753 Score: 222
Period size: 81 Copynumber: 1.9 Consensus size: 80
80339589 TTCTGCCCTA
* * *
80339599 CAGGGGTATTTCGATATTTTACAAATCGAGAGTATTTTGATAATTTCACAAATCAGGGGTATTTT
1 CAGGGGTATTTCGATATTTTACAAACCGAGAGTATTTTAATAATTTCACAAACCAGGGGTATTTT
80339664 GGTAATTTTACAAGC
66 GGTAATTTTACAAGC
* * * *
80339679 CAGGGGTATTTTGGTAATTTTACAAACC-AGGGGTATTTTAATAATTTTACAAACCAGGGGTATT
1 CAGGGGTATTTCGAT-ATTTTACAAACCGA-GAGTATTTTAATAATTTCACAAACCAGGGGTATT
80339743 TTGGTAATTTT
64 TTGGTAATTTT
80339754 GCTAATCGAG
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
80 14 0.21
81 52 0.79
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (80 bp):
CAGGGGTATTTCGATATTTTACAAACCGAGAGTATTTTAATAATTTCACAAACCAGGGGTATTTT
GGTAATTTTACAAGC
Found at i:80339753 original size:54 final size:54
Alignment explanation
Indices: 80339599--80339753 Score: 206
Period size: 54 Copynumber: 2.9 Consensus size: 54
80339589 TTCTGCCCTA
* * * * * *
80339599 CAGGGGTATTTCGAT-ATTTTACAAATC-GAGAGTATTTTGATAATTTCACAAAT
1 CAGGGGTATTTTGATAATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAAC
* *
80339652 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC
*
80339706 CAGGGGTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTT
1 CAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTT
80339754 GCTAATCGAG
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
53 13 0.15
54 75 0.84
55 1 0.01
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (54 bp):
CAGGGGTATTTTGATAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC
Found at i:80339767 original size:27 final size:27
Alignment explanation
Indices: 80339491--80339753 Score: 172
Period size: 27 Copynumber: 9.8 Consensus size: 27
80339481 TTCTACCTTA
** * ** *
80339491 CAGGGGTATTTCAGTAATTCTACCTTA
1 CAGGGGTATTTTGGTAATTTTACAATC
* * ** *
80339518 CAGGGGTATTTCGGTAATTCTACCCTA
1 CAGGGGTATTTTGGTAATTTTACAATC
* ** * ** *
80339545 CAGGGTTATTTCAGTAATTCTACCCTA
1 CAGGGGTATTTTGGTAATTTTACAATC
* * * ** *
80339572 CAGGGGTATTTCGGTAATTCTGCCCTA
1 CAGGGGTATTTTGGTAATTTTACAATC
* *
80339599 CAGGGGTATTTCGAT-ATTTTACAAATC
1 CAGGGGTATTTTGGTAATTTTAC-AATC
* * * *
80339626 GA-GAGTATTTTGATAATTTCACAAAT-
1 CAGGGGTATTTTGGTAATTTTAC-AATC
*
80339652 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGGGTATTTTGGTAATTTTACAATC
*
80339679 CAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAATC
** *
80339706 CAGGGGTATTTTAATAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAATC
80339733 CAGGGGTATTTTGGTAATTTT
1 CAGGGGTATTTTGGTAATTTT
80339754 GCTAATCGAG
Statistics
Matches: 205, Mismatches: 27, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
26 18 0.09
27 187 0.91
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAATC
Found at i:80339776 original size:81 final size:81
Alignment explanation
Indices: 80339630--80339778 Score: 192
Period size: 81 Copynumber: 1.8 Consensus size: 81
80339620 CAAATCGAGA
* * ****
80339630 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTA
1 GTATTTTAATAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTAAAACGGTA
80339695 ATTTTACAAACCAGGG
66 ATTTTACAAACCAGGG
* * * *
80339711 GTATTTTAATAATTTTACAAACCAGGGGTATTTTGGTAATTTTGCTAATCGA-GGGTAAAACGGT
1 GTATTTTAATAATTTCACAAACCAGGGGTATTTTGGTAATTTTAC-AAGCCAGGGGTAAAACGGT
80339775 AATT
65 AATT
80339779 CTATAAATCG
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 53 0.93
82 4 0.07
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (81 bp):
GTATTTTAATAATTTCACAAACCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTAAAACGGTA
ATTTTACAAACCAGGG
Found at i:80339778 original size:54 final size:54
Alignment explanation
Indices: 80339630--80339805 Score: 131
Period size: 54 Copynumber: 3.3 Consensus size: 54
80339620 CAAATCGAGA
* * * **** *
80339630 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGGGTAAAACGGTAATTTTACAAACCAGGG
******
80339684 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAATAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGGGTAAAACGGTAATTTTACAAACCAGGG
* * * * * * *
80339738 GTATTTTGGTAATTTTGCTAATC-GAGGGTAAAACGGTAATTCTATAAATC-GAG
1 GTATTTTGGTAATTTTACAAACCAG-GGGTAAAACGGTAATTTTACAAACCAGGG
*
80339791 GTACTTTGGTAATTT
1 GTATTTTGGTAATTT
80339806 GGTAAATTAA
Statistics
Matches: 101, Mismatches: 20, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
53 17 0.17
54 84 0.83
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAACCAGGGGTAAAACGGTAATTTTACAAACCAGGG
Found at i:80340894 original size:27 final size:26
Alignment explanation
Indices: 80340857--80340968 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
80340847 AGCATGGCTG
* *
80340857 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
80340883 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
80340911 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
80340938 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
80340965 CCAG
1 CCAG
80340969 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:80340916 original size:54 final size:54
Alignment explanation
Indices: 80340857--80340968 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
80340847 AGCATGGCTG
*
80340857 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
80340911 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
80340965 CCAG
1 CCAG
80340969 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:80345223 original size:24 final size:25
Alignment explanation
Indices: 80345196--80345247 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
80345186 GCCTAGCCTC
80345196 TTTTAAT-AACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
* *
80345220 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
80345245 TTT
1 TTT
80345248 CGGTAAACTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:80345237 original size:25 final size:25
Alignment explanation
Indices: 80345203--80345272 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
80345193 CTCTTTTAAT
* *
80345203 AACTAGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
80345228 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
80345253 AACTGGGGCATAA-CCCTTTT
1 AACTGGGGCA-AAGCCCTTTT
80345273 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
25 39 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:80345504 original size:27 final size:27
Alignment explanation
Indices: 80345474--80345717 Score: 326
Period size: 27 Copynumber: 9.0 Consensus size: 27
80345464 GGGGAAAAAT
* * * *
80345474 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80345501 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80345528 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80345555 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80345582 AGTAATTCTACACTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
80345609 GATAATTTTACCCTACAGGGTTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
80345636 AATAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80345663 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80345690 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80345717 G
1 G
80345718 ATATTTTACA
Statistics
Matches: 189, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 189 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80345757 original size:27 final size:27
Alignment explanation
Indices: 80345705--80345858 Score: 129
Period size: 27 Copynumber: 5.8 Consensus size: 27
80345695 TTCTACCCTA
* *
80345705 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGAGTATTTTGATAATTTTACAAAT
*
80345731 C-GAGAGTATTTTGATAATTTCACAAAT
1 CAG-GAGTATTTTGATAATTTTACAAAT
* * **
80345758 CAGGGGTATTTTGGTAATTTTACAAGC
1 CAGGAGTATTTTGATAATTTTACAAAT
* * * *
80345785 CAGGGGTATTTTGGTAATTTTACAGAC
1 CAGGAGTATTTTGATAATTTTACAAAT
80345812 CAGG-GTATTTT-AGTAATTTTACAAA-
1 CAGGAGTATTTTGA-TAATTTTACAAAT
* *
80345837 CTAGGGGTATTTTGGTAATTTT
1 C-AGGAGTATTTTGATAATTTT
80345859 GCTAATCGAA
Statistics
Matches: 108, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
25 2 0.02
26 32 0.30
27 73 0.68
28 1 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAGGAGTATTTTGATAATTTTACAAAT
Found at i:80345818 original size:53 final size:54
Alignment explanation
Indices: 80345651--80345858 Score: 176
Period size: 53 Copynumber: 3.9 Consensus size: 54
80345641 TTCTACCCTA
* * ** * * **
80345651 CAGGGGTGTTTCAGTAATTTTACCCTA-CAGGGGTATTTCGGTAATTCTACCCTA-
1 CAGGGGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTA-CAAAC
* * * * * *
80345705 CAGGGGTA-TTTCG-ATATTTTACAAATC-GAGAGTATTTTGATAATTTCACAAAT
1 CAGGGGTATTTTAGTA-ATTTTACAAACCAG-GGGTATTTTGGTAATTTTACAAAC
* * *
80345758 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAGAC
1 CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC
*
80345812 CA-GGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTT
1 CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTT
80345859 GCTAATCGAA
Statistics
Matches: 124, Mismatches: 23, Indels: 15
0.77 0.14 0.09
Matches are distributed among these distances:
52 6 0.05
53 74 0.60
54 42 0.34
55 2 0.02
ACGTcount: A:0.27, C:0.12, G:0.22, T:0.38
Consensus pattern (54 bp):
CAGGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAAC
Found at i:80345857 original size:80 final size:80
Alignment explanation
Indices: 80345678--80345858 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
80345668 TTTTACCCTA
* * **** *
80345678 CAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATATTTTACAAATCGAGAGTATTTT
1 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTCGATATTTTACAAATCCAGAGTATTTT
80345743 GATAATTTCACAAAT
66 GATAATTTCACAAAT
* * * *
80345758 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTTTACAGA-CCAGGGTATTT
1 CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTCGAT-ATTTTACAAATCCAGAGTATTT
*
80345822 T-AGTAATTTTACAAA-
65 TGA-TAATTTCACAAAT
80345837 CTAGGGGTATTTTGGTAATTTT
1 C-AGGGGTATTTTGGTAATTTT
80345859 GCTAATCGAA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
79 2 0.02
80 75 0.87
81 9 0.10
ACGTcount: A:0.28, C:0.12, G:0.22, T:0.39
Consensus pattern (80 bp):
CAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTCGATATTTTACAAATCCAGAGTATTTT
GATAATTTCACAAAT
Found at i:80345880 original size:80 final size:80
Alignment explanation
Indices: 80345736--80345883 Score: 176
Period size: 80 Copynumber: 1.9 Consensus size: 80
80345726 CAAATCGAGA
* ***
80345736 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTA
1 GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAGAGGTAAAATGGTA
80345801 ATTTTACAGACCAGG
66 ATTTTACAGACCAGG
* * * *
80345816 GTATTTT-AGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTGCTAATCGA-AGGTAAAATG
1 GTATTTTGA-TAATTTCACAAATC-AGGGGTATTTTGGTAATTTTAC-AAGCCAGAGGTAAAATG
80345878 GTAATT
63 GTAATT
80345884 CTGTAAATCG
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
79 2 0.04
80 51 0.89
81 4 0.07
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.39
Consensus pattern (80 bp):
GTATTTTGATAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAGCCAGAGGTAAAATGGTA
ATTTTACAGACCAGG
Found at i:80347036 original size:21 final size:21
Alignment explanation
Indices: 80347024--80347063 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
80347014 ATACTTAAGT
80347024 ATAATATAATAATATAATATA
1 ATAATATAATAATATAATATA
80347045 ATAATATAATAATATAATA
1 ATAATATAATAATATAATA
80347064 ATACATAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
ATAATATAATAATATAATATA
Found at i:80347037 original size:8 final size:8
Alignment explanation
Indices: 80347024--80347066 Score: 65
Period size: 8 Copynumber: 5.8 Consensus size: 8
80347014 ATACTTAAGT
80347024 ATAATATA
1 ATAATATA
80347032 AT-A-AT-
1 ATAATATA
80347037 ATAATATA
1 ATAATATA
80347045 ATAATATA
1 ATAATATA
80347053 ATAATATA
1 ATAATATA
80347061 ATAATA
1 ATAATA
80347067 CATAAAGTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 2 0.06
6 3 0.09
7 3 0.09
8 24 0.75
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:80347050 original size:16 final size:17
Alignment explanation
Indices: 80347029--80347071 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
80347019 TAAGTATAAT
80347029 ATAATAAT-ATAATATA
1 ATAATAATAATAATATA
80347045 ATAAT-ATAATAATATA
1 ATAATAATAATAATATA
80347061 ATAATACATAA
1 ATAATA-ATAA
80347072 AGTAAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 2 0.08
16 18 0.75
18 4 0.17
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAATAATAATAATATA
Found at i:80347063 original size:13 final size:13
Alignment explanation
Indices: 80347023--80347055 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
80347013 AATACTTAAG
80347023 TATAATATAATAA
1 TATAATATAATAA
80347036 TATAATATAATAA
1 TATAATATAATAA
80347049 TATAATA
1 TATAATA
80347056 ATATAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:80347982 original size:27 final size:26
Alignment explanation
Indices: 80347952--80348211 Score: 232
Period size: 27 Copynumber: 9.7 Consensus size: 26
80347942 GTTGTGCGTG
**
80347952 AAAATTACCAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCC-TGGTTTGT
80347979 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGT
* ** *
80348006 AAAATTACTAAAATACCCTTTATTTAT
1 AAAATTACCAAAATACCC-TGGTTTGT
80348033 AAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACC-CTGGTTTGT
*
80348060 AAAATTACCAAAATACCCCTGGTTTTT
1 AAAATTACCAAAATA-CCCTGGTTTGT
* *
80348087 AAAATTATCAAAATACCCCGAGTTTGT
1 AAAATTACCAAAATACCCTG-GTTTGT
*
80348114 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATA-CCCTGGTTTGT
* * ** * *
80348141 GAAATTGCTGAAATACCCTCAGTTTGC
1 AAAATTACCAAAATACCCT-GGTTTGT
*** ** *
80348168 AAAATTATTGAAATTTCCTCGATTTGT
1 AAAATTACCAAAATACCCT-GGTTTGT
*
80348195 AAAATTACCAAAGTACC
1 AAAATTACCAAAATACC
80348212 ATTGATTTAC
Statistics
Matches: 188, Mismatches: 38, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
26 11 0.06
27 167 0.89
28 10 0.05
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTGGTTTGT
Found at i:80348019 original size:54 final size:54
Alignment explanation
Indices: 80347952--80348131 Score: 272
Period size: 54 Copynumber: 3.3 Consensus size: 54
80347942 GTTGTGCGTG
*
80347952 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGT
* ** *
80348006 AAAATTACTAAAATACCCTTTATTTATAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGT
* * *
80348060 AAAATTACCAAAATACCCCTGGTTTTTAAAATTATCAAAATACCCC-GAGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTG-GTTTGT
80348114 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
80348132 CTGATTTGTG
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 112 0.99
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAATACCCCTGGTTTGT
Found at i:80348146 original size:54 final size:53
Alignment explanation
Indices: 80347952--80348174 Score: 257
Period size: 54 Copynumber: 4.1 Consensus size: 53
80347942 GTTGTGCGTG
* * *
80347952 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCC-GGTTTGT
* * * *
80348006 AAAATTACTAAAATACCCTTTATTTATAAAATTACCAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACC-CCGGTTTGT
* * *
80348060 AAAATTACCAAAATACCCCTGGTTTTTAAAATTATCAAAATACCCCGAGTTTGT
1 AAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCCG-GTTTGT
* * * ** * *
80348114 AAAATTACCAAAATACCCCTGATTTGTGAAATTGCTGAAATACCCTCAGTTTGC
1 AAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCC-CGGTTTGT
80348168 AAAATTA
1 AAAATTA
80348175 TTGAAATTTC
Statistics
Matches: 145, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
53 2 0.01
54 141 0.97
55 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCCGGTTTGT
Found at i:80348155 original size:81 final size:80
Alignment explanation
Indices: 80347952--80348211 Score: 281
Period size: 81 Copynumber: 3.2 Consensus size: 80
80347942 GTTGTGCGTG
* **
80347952 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-CTA
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATC-A
** *
80348016 AAATACCCTTTATTTAT
65 AAATACCC-CGATTTGT
* *
80348033 AAAATTACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCCTGGTTTTTAAAATTATCAA
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAA
80348098 AATACCCCGAGTTTGT
66 AATACCCCGA-TTTGT
* * * ** * * *
80348114 AAAATTACCAAAATACCCCTGATTTGTGAAATTGCTGAAATA-CCCTCAGTTTGCAAAATTATTG
1 AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCT-GGTTTGTAAAATTA-TC
* * *
80348178 AAATTTCCTCGATTTGT
64 AAAATACCCCGATTTGT
*
80348195 AAAATTACCAAAGTACC
1 AAAATTACCAAAATACC
80348212 ATTGATTTAC
Statistics
Matches: 153, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
80 5 0.03
81 137 0.90
82 11 0.07
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (80 bp):
AAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAA
AATACCCCGATTTGT
Found at i:80348281 original size:27 final size:27
Alignment explanation
Indices: 80348251--80348500 Score: 313
Period size: 27 Copynumber: 9.3 Consensus size: 27
80348241 CGATTTACAA
* ** *
80348251 AATTACCGAAACAATCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80348278 AATTACCAAAATACCCCTGTAGGGCAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80348305 AATTATCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80348332 AATTACCAAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80348359 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80348386 AATTATCGAAATACCCCTCTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
80348413 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
80348440 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
80348467 AATTACCGAGATA-CCCTCGTGGGGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
80348494 AATTACC
1 AATTACC
80348501 ATTTTGCCCC
Statistics
Matches: 191, Mismatches: 31, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 4 0.02
27 187 0.98
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:80348834 original size:22 final size:22
Alignment explanation
Indices: 80348801--80348859 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
80348791 CACGTTATCG
80348801 ATGGC-TCTGTGCCAACCTAAAT
1 ATGGCTTC-GTGCCAACCTAAAT
* * * *
80348823 ATGGCTTCGTGCCATCTTGACT
1 ATGGCTTCGTGCCAACCTAAAT
80348845 ATGGCTTCGTGCCAA
1 ATGGCTTCGTGCCAA
80348860 ACGTATTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (22 bp):
ATGGCTTCGTGCCAACCTAAAT
Found at i:80349047 original size:27 final size:26
Alignment explanation
Indices: 80349017--80349124 Score: 117
Period size: 27 Copynumber: 4.0 Consensus size: 26
80349007 ATTCTGTTAA
* *
80349017 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
80349044 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* *
80349071 GTGGCTCTGCCAAAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * **
80349098 GTGACTCTATCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
80349124 G
1 G
80349125 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
26 14 0.20
27 50 0.70
28 7 0.10
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:80349290 original size:31 final size:31
Alignment explanation
Indices: 80349246--80349320 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
80349236 ATTCACATTC
* *
80349246 TGATTTTGATTCTGTTACCTGATACTGATTT
1 TGATTCTGATTCTGTCACCTGATACTGATTT
* * *
80349277 TGATTCTGGTTCTGTCACCTGATTCTGATTC
1 TGATTCTGATTCTGTCACCTGATACTGATTT
* *
80349308 TAATTCTAATTCT
1 TGATTCTGATTCT
80349321 AGTTCTGATA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
TGATTCTGATTCTGTCACCTGATACTGATTT
Found at i:80351343 original size:32 final size:32
Alignment explanation
Indices: 80351305--80351369 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
80351295 ATAGATTATG
*
80351305 AAGGTTTATTGATAGATTTATTAGTTTTGTAA
1 AAGGTTTATTGATAGATTTACTAGTTTTGTAA
80351337 AAGGTTTATTGATAGATTTACTAGTTTTGTAA
1 AAGGTTTATTGATAGATTTACTAGTTTTGTAA
80351369 A
1 A
80351370 GTGATTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (32 bp):
AAGGTTTATTGATAGATTTACTAGTTTTGTAA
Found at i:80352242 original size:20 final size:19
Alignment explanation
Indices: 80352196--80352250 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
80352186 ATTCTGTTAA
*
80352196 CGATTATACGAATGAATTC
1 CGATTATATGAATGAATTC
* *
80352215 CTGGTTATATAAATGAATTC
1 C-GATTATATGAATGAATTC
80352235 TCGATTATATGAATGA
1 -CGATTATATGAATGA
80352251 GAAGGAATTG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 1 0.03
20 27 0.93
21 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
CGATTATATGAATGAATTC
Found at i:80353063 original size:30 final size:30
Alignment explanation
Indices: 80353027--80353094 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
80353017 TGTGTCTCGA
80353027 CCGTGTGTGATTCACA-G-TCATGTTATACGG
1 CCGTGTGTGA--CACACGATCATGTTATACGG
*
80353057 CCGTGTGTGACATACGATCATGTTATACGG
1 CCGTGTGTGACACACGATCATGTTATACGG
*
80353087 CTGTGTGT
1 CCGTGTGT
80353095 CCCTTGGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
28 3 0.09
29 1 0.03
30 30 0.88
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.34
Consensus pattern (30 bp):
CCGTGTGTGACACACGATCATGTTATACGG
Found at i:80362056 original size:38 final size:38
Alignment explanation
Indices: 80362014--80362221 Score: 240
Period size: 38 Copynumber: 5.5 Consensus size: 38
80362004 GCAAGCTATA
* * *
80362014 TGCTGG-AATTATATTCGGGCTAAATCCCGCAGGCTTTG
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTAG
* * *
80362052 TGCTGGTAATATATCCGAGTTAAATCCCGCAGGTTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTAG
*
80362090 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCGTAG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTAG
* * * *
80362128 TGCT-GCAATATATCCGGGTTAAACCCCGCAAGCTTCG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTAG
* * *
80362165 TGCTGGTAATATATCTGGGTTAAATCCCACAGGCCTAG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTAG
* * *
80362203 TGTTGGTATTATATTCGGG
1 TGCTGGTAATATATCCGGG
80362222 CCTTCGTGCC
Statistics
Matches: 143, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
37 32 0.22
38 109 0.76
39 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (38 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTAG
Found at i:80362169 original size:75 final size:76
Alignment explanation
Indices: 80362014--80362204 Score: 251
Period size: 75 Copynumber: 2.5 Consensus size: 76
80362004 GCAAGCTATA
* * * * * *
80362014 TGCTGG-AATTATATTCGGGCTAAATCCCGCAGGCTTTGTGCTGGTAATATATCCGAGTTAAATC
1 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGCAATATATCCGAGTTAAACC
* *
80362078 CCGCAGGTTTCG
65 CCGCAAGCTTCG
* *
80362090 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCGTAGTGCT-GCAATATATCCGGGTTAAACCC
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGCAATATATCCGAGTTAAACCC
80362154 CGCAAGCTTCG
66 CGCAAGCTTCG
* *
80362165 TGCTGGTAATATATCTGGGTTAAATCCCACAGGCCTAGTG
1 TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCTAGTG
80362205 TTGGTATTAT
Statistics
Matches: 102, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
75 65 0.64
76 35 0.34
77 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (76 bp):
TGCTGGTAATATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGCAATATATCCGAGTTAAACCC
CGCAAGCTTCG
Found at i:80362275 original size:43 final size:43
Alignment explanation
Indices: 80362214--80362368 Score: 256
Period size: 43 Copynumber: 3.6 Consensus size: 43
80362204 GTTGGTATTA
* *
80362214 TATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
80362257 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
80362300 TATTCGGGCTTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
80362343 TATTCGGGCCTTCGTGTCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
80362369 GTAATGCCGG
Statistics
Matches: 104, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 104 1.00
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:80364030 original size:48 final size:48
Alignment explanation
Indices: 80363936--80364039 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
80363926 TGTGCTAAGC
* * *
80363936 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
**
80363984 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
80364032 ATAAGACC
1 GTAAGACC
80364040 ATAGTTGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 8 0.17
48 40 0.83
ACGTcount: A:0.30, C:0.22, G:0.31, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:80367704 original size:37 final size:37
Alignment explanation
Indices: 80367560--80367779 Score: 289
Period size: 38 Copynumber: 5.8 Consensus size: 37
80367550 GGCCTAAAGA
* * *
80367560 CCCGCAGGCTAT-ATGCTGGAATTATATCCGAGTTAAAT
1 CCCGCAGGCT-TCGTGCTGTAA-TATATCCGGGTTAAAT
80367598 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCT-GTAATATATCCGGGTTAAAT
*
80367636 CCCGCAGGCTTCGTACTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCT-GTAATATATCCGGGTTAAAT
*
80367674 CCCGTAGGCTTCGTGCTGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGTAATATATCCGGGTTAAAT
*
80367711 CCTGCAGGCTTCGTGCTGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGTAATATATCCGGGTTAAAT
* * * * *
80367748 CCTGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCT-GTAATATATCCGGG
80367780 CCTTCGTGCC
Statistics
Matches: 167, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
37 71 0.43
38 93 0.56
39 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (37 bp):
CCCGCAGGCTTCGTGCTGTAATATATCCGGGTTAAAT
Found at i:80367723 original size:75 final size:75
Alignment explanation
Indices: 80367582--80367779 Score: 299
Period size: 75 Copynumber: 2.6 Consensus size: 75
80367572 ATGCTGGAAT
*
80367582 TATATCCGAGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
80367647 CGTACTGGTAA
66 CGTACT-GTAA
* *
80367658 TATATCCGGGTTAAATCCCGTAGGCTTCGTGCT-GTAATATATCCGGGTTAAATCCTGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
*
80367722 CGTGCTGTAA
66 CGTACTGTAA
* * * * *
80367732 TATATCCGGGTTAAATCCTGCAGGCCTAGTGCTGGTATTATATTCGGG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGG
80367780 CCTTCGTGCC
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
74 33 0.30
75 47 0.42
76 31 0.28
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (75 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
CGTACTGTAA
Found at i:80367833 original size:43 final size:43
Alignment explanation
Indices: 80367772--80368012 Score: 405
Period size: 43 Copynumber: 5.6 Consensus size: 43
80367762 GCTGGTATTA
*
80367772 TATTCGGGCCTTCGTGCCTAGCAAGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
80367815 TATTCGAGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
80367858 TATTCGAGCCTTCGTGCCTAGCAGGCTTCGTGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
* *
80367901 TATTCGGGCCTTAGTGCCTAGTAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
80367944 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
80367987 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
80368013 GTAATGCCGG
Statistics
Matches: 188, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
42 2 0.01
43 185 0.98
44 1 0.01
ACGTcount: A:0.13, C:0.25, G:0.31, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
Found at i:80368407 original size:44 final size:45
Alignment explanation
Indices: 80368338--80368423 Score: 131
Period size: 44 Copynumber: 1.9 Consensus size: 45
80368328 ACTTGTTGAT
* *
80368338 ATGATTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTAAA
1 ATGATTATTCGGGCCTTCGAGCCTAGCAGGCGA-AATGCCGGTAAA
80368384 ATGATTA-TCGGGCC-TCGAGCCTAGCAGGCGAAATGCCGGT
1 ATGATTATTCGGGCCTTCGAGCCTAGCAGGCGAAATGCCGGT
80368424 GATTTGAGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
43 9 0.24
44 15 0.39
45 7 0.18
46 7 0.18
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (45 bp):
ATGATTATTCGGGCCTTCGAGCCTAGCAGGCGAAATGCCGGTAAA
Found at i:80374152 original size:66 final size:69
Alignment explanation
Indices: 80374062--80374191 Score: 176
Period size: 66 Copynumber: 1.9 Consensus size: 69
80374052 ACATGGTGAA
* * *
80374062 CACTTAGTACCACTCATGCGACCTAGCCA-ATTTGT-CT-CGTAGCTCTCTTGTCTACATGGTGT
1 CACTTAGAACCACGCATGCGACCTAGCCACATTTATCCTCCGTAGCTCTCTTGTCTACATGGTGT
80374124 CCTT
66 CCTT
* *
80374128 CACTTAGAATCACGCATGCGACCTAGCTACATTTATCCCTCCCGTAGCTCTCTTGTCTACATGG
1 CACTTAGAACCACGCATGCGACCTAGCCACATTTAT-CCT-CCGTAGCTCTCTTGTCTACATGG
80374192 GATACATCCC
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
66 25 0.46
67 5 0.09
69 2 0.04
71 22 0.41
ACGTcount: A:0.20, C:0.32, G:0.16, T:0.32
Consensus pattern (69 bp):
CACTTAGAACCACGCATGCGACCTAGCCACATTTATCCTCCGTAGCTCTCTTGTCTACATGGTGT
CCTT
Found at i:80383546 original size:37 final size:38
Alignment explanation
Indices: 80383401--80383583 Score: 273
Period size: 38 Copynumber: 4.8 Consensus size: 38
80383391 GGCCTAAAGA
*
80383401 CCCGCAGGCTAT-ATGCTGG-AATTATATCCGGGTTAAAT
1 CCCGCAGGCT-TCGTGCTGGTAA-TATATCCGGGTTAAAT
80383439 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
80383477 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
*
80383515 CCCGCAGGCTTCGTGCT-ATAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* * * *
80383552 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGG
80383584 CCTTCGTGCC
Statistics
Matches: 135, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
37 35 0.26
38 98 0.73
39 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
Found at i:80383571 original size:75 final size:76
Alignment explanation
Indices: 80383401--80383583 Score: 273
Period size: 75 Copynumber: 2.4 Consensus size: 76
80383391 GGCCTAAAGA
* *
80383401 CCCGCAGG-CTATATGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATAT
1 CCCGCAGGCCTA-GTGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAATAT
80383464 ATCCGGGTTAAAT
64 ATCCGGGTTAAAT
* *
80383477 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCT-ATAATATAT
1 CCCGCAGGCCTAGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAATATAT
80383541 CCGGGTTAAAT
66 CCGGGTTAAAT
* *
80383552 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCCTAGTGCTGGTAATATATCCGGG
80383584 CCTTCGTGCC
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
75 47 0.48
76 47 0.48
77 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (76 bp):
CCCGCAGGCCTAGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGATAATATAT
CCGGGTTAAAT
Found at i:80383629 original size:43 final size:43
Alignment explanation
Indices: 80383576--80383902 Score: 480
Period size: 43 Copynumber: 7.6 Consensus size: 43
80383566 GCTGGTATTA
* *
80383576 TATTCGGGCCTTCGTGCCTAACAGGCTTCGTACCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
* *
80383619 TATTCAGGCCTTCATGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
80383662 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
* *
80383705 TATTCGGACCTTCATGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
* * *
80383748 TATTCGGGCATTCGTGCCTAGTAGGCTTCATGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
* * *
80383791 TATTCAGACCTTCATGCCTAGCAGGCTTCGTGCCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
*
80383834 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCC-AGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGA-TGATGTG
*
80383877 TATTCAGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
80383903 GTAATACCGG
Statistics
Matches: 254, Mismatches: 25, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
42 3 0.01
43 249 0.98
44 2 0.01
ACGTcount: A:0.15, C:0.25, G:0.29, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGATGATGTG
Found at i:80383721 original size:86 final size:86
Alignment explanation
Indices: 80383576--80383902 Score: 550
Period size: 86 Copynumber: 3.8 Consensus size: 86
80383566 GCTGGTATTA
* *
80383576 TATTCGGGCCTTCGTGCCTAACAGGCTTCGTACC-GATGATGTGTATTCAGGCCTTCATGCCTAG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAG-TGATGTGTATTCAGGCCTTCATGCCTAG
80383640 CAGGCTTCGTGCCGATGATGTG
65 CAGGCTTCGTGCCGATGATGTG
80383662 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTC-GGACCTTCATGCCTAG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGG-CCTTCATGCCTAG
80383726 CAGGCTTCGTGCCGATGATGTG
65 CAGGCTTCGTGCCGATGATGTG
* * * *
80383748 TATTCGGGCATTCGTGCCTAGTAGGCTTCATGCCAGTGATGTGTATTCAGACCTTCATGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGGCCTTCATGCCTAGC
80383813 AGGCTTCGTGCCGATGATGTG
66 AGGCTTCGTGCCGATGATGTG
* *
80383834 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGGCCTTCATGCCTAGC
80383899 AGGC
66 AGGC
80383903 GTAATACCGG
Statistics
Matches: 226, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
85 2 0.01
86 222 0.98
87 2 0.01
ACGTcount: A:0.15, C:0.25, G:0.29, T:0.31
Consensus pattern (86 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGGCCTTCATGCCTAGC
AGGCTTCGTGCCGATGATGTG
Found at i:80390373 original size:40 final size:40
Alignment explanation
Indices: 80390175--80390377 Score: 197
Period size: 40 Copynumber: 5.1 Consensus size: 40
80390165 TCGAATGATG
*
80390175 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* * *
80390215 TCCGGACTAAGAT-CCGAAGGCATTTGTTCGAGTTACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATAA
*
80390255 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATAA
* *
80390294 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* **
80390335 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTATAA
80390374 TCCG
1 TCCG
80390378 ATTAAATTCC
Statistics
Matches: 136, Mismatches: 16, Indels: 22
0.78 0.09 0.13
Matches are distributed among these distances:
38 1 0.01
39 35 0.26
40 89 0.65
41 11 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:80390390 original size:79 final size:80
Alignment explanation
Indices: 80390176--80390392 Score: 223
Period size: 79 Copynumber: 2.7 Consensus size: 80
80390166 CGAATGATGT
* *
80390176 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGA-TCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGGATTAA-ATTCCGAAGGCAT
* * *
80390238 TTGTTCGAGTTACTAATT
63 TTGTGCAAGTTACTAATA
* * * * *
80390256 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTCA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-AGCTATATCCGGATTAAATTCCGAAGGCATTT
80390319 GTGCAAGTTACT-ATAA
65 GTGCAAGTTACTAAT-A
* **
80390335 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCC-GATTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGATTAAATTCCGAAGG
80390393 TACGTGATTC
Statistics
Matches: 112, Mismatches: 18, Indels: 15
0.77 0.12 0.10
Matches are distributed among these distances:
78 2 0.02
79 69 0.62
80 41 0.37
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGATTAAATTCCGAAGGCATTTG
TGCAAGTTACTAATA
Found at i:80391927 original size:46 final size:46
Alignment explanation
Indices: 80391774--80391899 Score: 139
Period size: 46 Copynumber: 2.7 Consensus size: 46
80391764 ATATTATGAG
* * * * *
80391774 AGCCTGTGTAAGACCATGTCTAGGACATGGCATCAGCATCGAGAC--A
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTAGCCTCAAGACGTA
*
80391820 AGTGCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCAAGACGTA
1 A--GCCAGTGTAAGACATGTCTGGGACATGCATTAGCCTCAAGACGTA
*
80391868 AGCCAGTGTAAGACATGTTTGGGACATGCATT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATT
80391900 GGCTGAGAGA
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
46 43 0.63
47 13 0.19
48 12 0.18
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATTAGCCTCAAGACGTA
Found at i:80393963 original size:41 final size:41
Alignment explanation
Indices: 80393918--80394085 Score: 273
Period size: 41 Copynumber: 4.1 Consensus size: 41
80393908 ATTTTAGTAA
80393918 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTATTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTATTGGC
* * *
80393959 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTAGA
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTATTGGC
*
80394000 AAAATGCCGCTAAAAACCAGAGCATTAGCGGCGCTATTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTATTGGC
* * *
80394041 AAAACGCCGCTAAAAACTAGAGCATTAGCTGCGCTTTTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTATTGGC
80394082 AAAA
1 AAAA
80394086 TAACCCCTAA
Statistics
Matches: 116, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 116 1.00
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTATTGGC
Found at i:80394003 original size:82 final size:83
Alignment explanation
Indices: 80393877--80394078 Score: 302
Period size: 82 Copynumber: 2.5 Consensus size: 83
80393867 CGTTTTACCA
* * * * *
80393877 AAAATGCCACTAAAAA-CAGAGCAATAACGGC-ATTTTAGTAAAAAACGCCGCTAAAAACCAGAG
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTAG-AAAAAACGCCGCTAAAAACCAGAG
80393940 CATTAGCGGCGCTATTGGC
65 CATTAGCGGCGCTATTGGC
*
80393959 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTAG-AAAAATGCCGCTAAAAACCAGAGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTAGAAAAAACGCCGCTAAAAACCAGAGC
80394023 ATTAGCGGCGCTATTGGC
66 ATTAGCGGCGCTATTGGC
* *
80394041 AAAACGCCGCTAAAAACTAGAGCATTAGCTGCGCTTTT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTT
80394079 GGCAAAATAA
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
82 91 0.83
83 13 0.12
84 6 0.05
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (83 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTAGAAAAAACGCCGCTAAAAACCAGAGC
ATTAGCGGCGCTATTGGC
Found at i:80394319 original size:46 final size:46
Alignment explanation
Indices: 80394251--80394344 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
80394241 GTTTATGGTT
*
80394251 TATGGTGTAAGATATATAGTTTAGGGTTTAAGATTTTTGAGTTAAC
1 TATGGTGTAAGATATATAGTTTAGGGTTTAAGATTTATGAGTTAAC
* * *
80394297 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTGTAAGATATATAGTTTAGGGTTTAAGATTTATGAGTTAAC
80394343 TA
1 TA
80394345 GTATTTGAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (46 bp):
TATGGTGTAAGATATATAGTTTAGGGTTTAAGATTTATGAGTTAAC
Found at i:80394326 original size:21 final size:21
Alignment explanation
Indices: 80394244--80394328 Score: 80
Period size: 21 Copynumber: 3.9 Consensus size: 21
80394234 CATTATAGTT
* *
80394244 TATGGTTTATGGTGTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
80394265 TATAGTTTAGGGTTTAAGATT
1 TATGGTTTAGGGTTTAAGATA
* *
80394286 TTTGAGTTAACTATGGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
80394311 TATGGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
80394329 GTTTATGAGT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
21 29 0.58
22 3 0.06
24 3 0.06
25 15 0.30
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:80394971 original size:23 final size:23
Alignment explanation
Indices: 80394910--80394972 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
80394900 TAATATCCTA
*
80394910 TATATGTAATTGTATTTAAATTT
1 TATATGTAATTGTATTAAAATTT
*
80394933 T-TAATTTATATT-TATTAAAATTT
1 TAT-ATGTA-ATTGTATTAAAATTT
80394956 TATATGTAATTGTATTA
1 TATATGTAATTGTATTA
80394973 GCATTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
22 4 0.12
23 25 0.76
24 4 0.12
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (23 bp):
TATATGTAATTGTATTAAAATTT
Found at i:80399304 original size:43 final size:43
Alignment explanation
Indices: 80399236--80399338 Score: 161
Period size: 43 Copynumber: 2.4 Consensus size: 43
80399226 TTAATTTTTA
* * * **
80399236 TGACATTTAGCGGCGTTTTTTGGAAAAGTGCCGCTAAAGGTCC
1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCC
80399279 TGACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCC
1 TGACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCC
80399322 TGACCTTTAGCGGCGTT
1 TGACCTTTAGCGGCGTT
80399339 GTTTTCAAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (43 bp):
TGACCTTTAGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCC
Found at i:80406288 original size:32 final size:32
Alignment explanation
Indices: 80406247--80406312 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
80406237 ATTTTCTTAT
80406247 CAAAATTTTCATATGACATTCCTATTACAATG
1 CAAAATTTTCATATGACATTCCTATTACAATG
80406279 CAAAATTTTCATATGACATTCCTATTACAATG
1 CAAAATTTTCATATGACATTCCTATTACAATG
80406311 CA
1 CA
80406313 TACCATACAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (32 bp):
CAAAATTTTCATATGACATTCCTATTACAATG
Found at i:80408128 original size:48 final size:48
Alignment explanation
Indices: 80408026--80408347 Score: 280
Period size: 48 Copynumber: 6.7 Consensus size: 48
80408016 GTGTATGTGT
* **
80408026 GCTAGT-TAAAACCATGTCTGGGACATGGCATCAACCACTT--TATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC--GGACTTGATATGAGA
* ** * *
80408073 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATATGAGA
* * * * ***
80408121 GCTAGTGTAAAACCATGTCTAGGAGATGGCATC-AACCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGA-TATGAGA
***
80408169 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACCACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGA-TATGAGA
* * * *
80408217 GAC-AGTGTAAGACCATGTCTGGGACATGGCACCAG-CATTGACACGAGA
1 G-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGAC-TTGATATGAGA
* * * * * *
80408265 GCTAGTGTAAGACCATATCTGGGACAAGGCATCGGCCTCGACATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATATGAGA
*
80408313 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
80408348 TAATTTACCC
Statistics
Matches: 226, Mismatches: 40, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
46 2 0.01
47 7 0.03
48 213 0.94
49 4 0.02
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTTGATATGAGA
Found at i:80408224 original size:96 final size:94
Alignment explanation
Indices: 80408019--80408345 Score: 349
Period size: 96 Copynumber: 3.4 Consensus size: 94
80408009 CAATTGGGTG
* * *
80408019 TATGTGTGCTAGT-TAAAACCATGTCTGGGACATGGCATCAACCACTTTATGAGAGCCAGTGTAA
1 TATGTGAGC-AGTGTAAAACCATGTCTGGGACATGGCATCAACCACATTATGAGAGCTAGTGTAA
*** *
80408083 GACCATGTCTGGGACATGGCATCGGTGTTGA
65 GACCATGTCTGGGACATGGCATC-GACCTCA
* * *
80408114 TATGTGTGCTAGTGTAAAACCATGTCTAGGAGATGGCATCAACCACATTATGAGAGCTAGTGTAA
1 TATGTGAGC-AGTGTAAAACCATGTCTGGGACATGGCATCAACCACATTATGAGAGCTAGTGTAA
*
80408179 GACCATGTCTGGGACATGGCATCGACCACA
65 GACCATGTCTGGGACATGGCATCGACCTCA
* * *
80408209 TTATGAGAGACAGTGTAAGACCATGTCTGGGACATGG---C-ACCAGCATTGACACGAGAGCTAG
1 -TATGTGAG-CAGTGTAAAACCATGTCTGGGACATGGCATCAACCA-CATT---ATGAGAGCTAG
* * *
80408270 TGTAAGACCATATCTGGGACAAGGCATCGGCCTCGA
60 TGTAAGACCATGTCTGGGACATGGCATCGACCTC-A
* *
80408306 CATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TATGTGAG-CAGTGTAAAACCATGTCTGGGACATGGCATC
80408346 GGTAATTTAC
Statistics
Matches: 199, Mismatches: 22, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
92 4 0.02
93 5 0.03
95 15 0.08
96 172 0.86
97 2 0.01
99 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
TATGTGAGCAGTGTAAAACCATGTCTGGGACATGGCATCAACCACATTATGAGAGCTAGTGTAAG
ACCATGTCTGGGACATGGCATCGACCTCA
Found at i:80408296 original size:144 final size:144
Alignment explanation
Indices: 80408026--80408346 Score: 412
Period size: 144 Copynumber: 2.2 Consensus size: 144
80408016 GTGTATGTGT
* * * *
80408026 GCTAGT-TAAAACCATGTCTGGGACATGGCATCAACCACTTTATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATG
* * ** * * * * * * *
80408090 TCTGGGACATGGCATCGGTGTTGATATGTGTGCTAGTGTAAAACCATGTCTAGGAGATGGCATCA
66 TCTGGGACATGGCACCAGCATTGACACGAGAGCTAGTGTAAAACCATATCTAGGACAAGGCATCA
*
80408155 ACCAC-ATTATGAGA
131 ACCACGA-CATGAGA
80408169 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATG
* * *
80408234 TCTGGGACATGGCACCAGCATTGACACGAGAGCTAGTGTAAGACCATATCTGGGACAAGGCATCG
66 TCTGGGACATGGCACCAGCATTGACACGAGAGCTAGTGTAAAACCATATCTAGGACAAGGCATCA
* * *
80408299 GCCTCGACATGTGA
131 ACCACGACATGAGA
*
80408313 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
80408347 GTAATTTACC
Statistics
Matches: 153, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
143 6 0.04
144 146 0.95
145 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.23
Consensus pattern (144 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGACAGTGTAAGACCATG
TCTGGGACATGGCACCAGCATTGACACGAGAGCTAGTGTAAAACCATATCTAGGACAAGGCATCA
ACCACGACATGAGA
Found at i:80422264 original size:85 final size:85
Alignment explanation
Indices: 80422121--80422287 Score: 237
Period size: 85 Copynumber: 2.0 Consensus size: 85
80422111 TCAAGTCTAT
*
80422121 TTTGACACAAGCTCCTATTTTAGTTCAATCAGAATCAGGTCAGGAGTTTGTGGTATACAGTGATG
1 TTTGACACAAGCTCCTATTTTAGTTCAATCAGAATCAGGTCAGGAGTTTGTGGCATACAGTGATG
*
80422186 TATCACACGCCAGGTTAAGA
66 CATCACACGCCAGGTTAAGA
* * * **
80422206 TTTGACACAAGCTCTTGTTTTAGTTCAA-CTGAAATTGGGTCAGGAGTTTGTGGCATACAGTGAT
1 TTTGACACAAGCTCCTATTTTAGTTCAATCAG-AATCAGGTCAGGAGTTTGTGGCATACAGTGAT
* *
80422270 GCATCATATGCCAGGTTA
65 GCATCACACGCCAGGTTA
80422288 GGATGTGTTC
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
84 2 0.03
85 70 0.97
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (85 bp):
TTTGACACAAGCTCCTATTTTAGTTCAATCAGAATCAGGTCAGGAGTTTGTGGCATACAGTGATG
CATCACACGCCAGGTTAAGA
Found at i:80430512 original size:40 final size:40
Alignment explanation
Indices: 80430457--80430685 Score: 302
Period size: 40 Copynumber: 5.7 Consensus size: 40
80430447 ATGATAACGA
*
80430457 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCG
* *
80430497 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCG
*
80430537 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCG
* * * *
80430577 GGCTAAGTCCCGAAAGCATTTGTACGATTTACT-ATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCG
* * *
80430617 GGCTAAGTCTCAAAGGCATTTGTGCGAACT-ACTACA-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCG-AGTGACTA-ATTCCG
*
80430657 GGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT
80430686 AGCCATATCC
Statistics
Matches: 169, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
39 4 0.02
40 162 0.96
41 2 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCG
Found at i:80430590 original size:80 final size:80
Alignment explanation
Indices: 80430457--80430711 Score: 304
Period size: 80 Copynumber: 3.2 Consensus size: 80
80430447 ATGATAACGA
* * *
80430457 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTAC
* *
80430522 TAGTGACTA-ATTTCG
66 GAGTGACTATA-TCCG
*
80430537 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAAGCATTTGTAC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTAC
* *
80430602 GATTTACTATATCCG
66 GAGTGACTATATCCG
* * **
80430617 GGCTAAGTCTCAAAGGCATTTGTGCGAACTACTACA-TCCGGGCTAAGTCCCGAAGGCATTTG-A
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGCTAAGTCCCGAAGGCATTTGTA
*
80430680 GCGAGT-AGCCATATCC-
65 -CGAGTGA-CTATATCCG
* *
80430696 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
80430712 TACTTGGTTT
Statistics
Matches: 152, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
79 14 0.09
80 136 0.89
81 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTAC
GAGTGACTATATCCG
Found at i:80430696 original size:40 final size:40
Alignment explanation
Indices: 80430457--80430711 Score: 245
Period size: 40 Copynumber: 6.4 Consensus size: 40
80430447 ATGATAACGA
* *
80430457 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACCATATTCCG
* * *
80430497 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTTCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACCATATTCCG
*
80430537 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAG-TACCATATTCCG
* * * *
80430577 GGCTAAGTCCCGAAAGCATTTGTACGATTTACTATA-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGA-GTACCATATTCCG
* * * * *
80430617 GGCTAAGTCTCAAAGGCATTTGTGCGAACTACTACA-TCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCG-AGTACCATATTCCG
*
80430657 GGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCCATA-TCC-
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CCATATTCCG
* *
80430696 GGTTAAATCCCGAAGG
1 GGCTAAGTCCCGAAGG
80430712 TACTTGGTTT
Statistics
Matches: 190, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 17 0.09
40 170 0.89
41 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTACCATATTCCG
Found at i:80434391 original size:16 final size:16
Alignment explanation
Indices: 80434360--80434398 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
80434350 TAATTTTATA
80434360 AAAATAATATTTTTTG
1 AAAATAATATTTTTTG
*
80434376 TAAAT-ATATATTTTTG
1 AAAATAATAT-TTTTTG
80434392 AAAATAA
1 AAAATAA
80434399 ATAAGAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
15 4 0.21
16 14 0.74
17 1 0.05
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (16 bp):
AAAATAATATTTTTTG
Found at i:80436638 original size:35 final size:35
Alignment explanation
Indices: 80436594--80436679 Score: 154
Period size: 35 Copynumber: 2.5 Consensus size: 35
80436584 AATGATATAT
80436594 AATCTTAGATATGATACAATCTTAAATATGATTGC
1 AATCTTAGATATGATACAATCTTAAATATGATTGC
* *
80436629 AATTTTAGATATGATACAATCTTAGATATGATTGC
1 AATCTTAGATATGATACAATCTTAAATATGATTGC
80436664 AATCTTAGATATGATA
1 AATCTTAGATATGATA
80436680 TACAATTTTA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (35 bp):
AATCTTAGATATGATACAATCTTAAATATGATTGC
Done.