Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 239 of 345
Found at i:81049024 original size:15 final size:15
Alignment explanation
Indices: 81048970--81049042 Score: 56
Period size: 15 Copynumber: 4.8 Consensus size: 15
81048960 TTAAGAATGT
* *
81048970 TATTAAATTATATTA
1 TATTATATTAAATTA
81048985 TATTATATTAAATTA
1 TATTATATTAAATTA
* **
81049000 TATTTTATTTTATTA
1 TATTATATTAAATTA
* * *
81049015 AATTATATTTAATAA
1 TATTATATTAAATTA
*
81049030 TAATTATGTTAAA
1 T-ATTATATTAAA
81049043 ATATGGTTAA
Statistics
Matches: 45, Mismatches: 12, Indels: 1
0.78 0.21 0.02
Matches are distributed among these distances:
15 36 0.80
16 9 0.20
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (15 bp):
TATTATATTAAATTA
Found at i:81049024 original size:20 final size:20
Alignment explanation
Indices: 81048969--81049024 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
81048959 ATTAAGAATG
*
81048969 TTATTAAATTATATTATATT
1 TTATTAAATTATATTTTATT
*
81048989 ATATTAAATTATATTTTATT
1 TTATTAAATTATATTTTATT
81049009 TTATTAAATTATATTT
1 TTATTAAATTATATTT
81049025 AATAATAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TTATTAAATTATATTTTATT
Found at i:81051167 original size:19 final size:21
Alignment explanation
Indices: 81051145--81051189 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
81051135 AAATTTCACA
*
81051145 TTTAAT-TATT-TTTATAATT
1 TTTAATATATTATTAATAATT
*
81051164 TTT-ATATATTATTAATGATT
1 TTTAATATATTATTAATAATT
81051184 TTTAAT
1 TTTAAT
81051190 GTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
18 2 0.10
19 7 0.33
20 10 0.48
21 2 0.10
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTAATATATTATTAATAATT
Found at i:81061684 original size:13 final size:13
Alignment explanation
Indices: 81061653--81061690 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
81061643 AATAAAGGAT
* *
81061653 TAAGTAAAGAATA
1 TAAGTAAATAAAA
81061666 -AAGTAAATAAAA
1 TAAGTAAATAAAA
81061678 TAAGTAAATAAAA
1 TAAGTAAATAAAA
81061691 ATAAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (13 bp):
TAAGTAAATAAAA
Found at i:81063215 original size:43 final size:43
Alignment explanation
Indices: 81063147--81063301 Score: 249
Period size: 43 Copynumber: 3.6 Consensus size: 43
81063137 CCGGCATTAC
* *
81063147 GCCTGCTAGGCACGAAGGCCTGAATACACATCACTAGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
* *
81063190 GCCTGCTAGGCACGAAGGTCCGAATACACATCA-TCGGCATGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACT-GGCACGAA
*
81063233 GCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAA
1 GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
81063276 GCCTGCTAGGCACGAAGGCCCGAATA
1 GCCTGCTAGGCACGAAGGCCCGAATA
81063302 TAATACCAAC
Statistics
Matches: 103, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
42 1 0.01
43 102 0.99
ACGTcount: A:0.30, C:0.31, G:0.26, T:0.13
Consensus pattern (43 bp):
GCCTGCTAGGCACGAAGGCCCGAATACACATCACTGGCACGAA
Found at i:81063283 original size:86 final size:86
Alignment explanation
Indices: 81063138--81063301 Score: 274
Period size: 86 Copynumber: 1.9 Consensus size: 86
81063128 ATCATTTCAC
* * * *
81063138 CGGCATTACGCCTGCTAGGCACGAAGGCCTGAATACACATCACTAGCACGAAGCCTGCTAGGCAC
1 CGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCAC
*
81063203 GAAGGTCCGAATACACATCAT
66 GAAGGCCCGAATACACATCAT
*
81063224 CGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCAC
1 CGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCAC
81063289 GAAGGCCCGAATA
66 GAAGGCCCGAATA
81063302 TAATACCAAC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 72 1.00
ACGTcount: A:0.30, C:0.31, G:0.26, T:0.13
Consensus pattern (86 bp):
CGGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCAC
GAAGGCCCGAATACACATCAT
Found at i:81063455 original size:75 final size:75
Alignment explanation
Indices: 81063294--81063614 Score: 527
Period size: 75 Copynumber: 4.3 Consensus size: 75
81063284 GGCACGAAGG
* * * * * *
81063294 CCCGAATATAATACCAACACTAGGCCTGCGGGATTTAACCTGGATATATTACTAGCACGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTAC-AGCACGAAGCCT
81063359 GCGGGATTTAA
65 GCGGGATTTAA
*
81063370 CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAAGCCTG
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAAGCCTG
81063435 CGGGATTTAA
66 CGGGATTTAA
81063445 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAAGCCTG
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAAGCCTG
81063510 CGGGATTTAA
66 CGGGATTTAA
* *
81063520 CCCGGATATATTATCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCATGAAGCCT
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTA-CAGCACGAAGCCT
81063585 GCGGGATTTAA
65 GCGGGATTTAA
81063596 CCCGGATATAATT-CCAGCA
1 CCCGGATAT-ATTACCAGCA
81063615 TATAGCCTGC
Statistics
Matches: 232, Mismatches: 11, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
75 147 0.63
76 82 0.35
77 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (75 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAAGCCTG
CGGGATTTAA
Found at i:81063538 original size:113 final size:112
Alignment explanation
Indices: 81063317--81063614 Score: 524
Period size: 113 Copynumber: 2.6 Consensus size: 112
81063307 CCAACACTAG
* * *
81063317 GCCTGCGGGATTTAACCTGGATATATTACTAGCACGAAGCCTGCGGGATTTAACTCGGATATATT
1 GCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
81063382 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAA
66 A-CAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAA
81063430 GCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 GCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
81063495 ACAGCACGAAGCCTGCGGGATTTAACCCGGATATATTATCAGCACGAA
66 ACAGCACGAAGCCTGCGGGATTTAACCCGGATATATTA-CAGCACGAA
*
81063543 GCCTGCGGGATTTAACCCGGATATATTACCAGCATGAAGCCTGCGGGATTTAACCCGGATATAAT
1 GCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATAT-AT
*
81063608 TCCAGCA
65 TACAGCA
81063615 TATAGCCTGC
Statistics
Matches: 178, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
112 37 0.21
113 133 0.75
114 8 0.04
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (112 bp):
GCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
ACAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACAGCACGAA
Found at i:81063624 original size:38 final size:38
Alignment explanation
Indices: 81063294--81063614 Score: 522
Period size: 38 Copynumber: 8.5 Consensus size: 38
81063284 GGCACGAAGG
* * * * *
81063294 CCCGAATATAATACCAACACTAGGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
* *
81063332 CCTGGATATATTACTAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
81063370 CTCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
81063408 CCCGGATATATTA-CAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
81063445 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
81063483 CCCGGATATATTA-CAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
81063520 CCCGGATATATTATCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
*
81063558 CCCGGATATATTACCAGCATGAAGCCTGCGGGATTTAA
1 CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
81063596 CCCGGATATAATT-CCAGCA
1 CCCGGATAT-ATTACCAGCA
81063615 TATAGCCTGC
Statistics
Matches: 267, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
37 74 0.28
38 190 0.71
39 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.23
Consensus pattern (38 bp):
CCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAA
Found at i:81078018 original size:21 final size:21
Alignment explanation
Indices: 81077992--81078032 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81077982 ATCTGCTCAA
* *
81077992 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
81078013 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
81078033 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:81091773 original size:63 final size:62
Alignment explanation
Indices: 81091669--81091796 Score: 211
Period size: 63 Copynumber: 2.0 Consensus size: 62
81091659 AAAGTTGTTT
* * *
81091669 TAGGGCAGCTCTTACTTGGGTAACCAGACAAATTAGGTAATTAAGTTTGTTTCATTGTTCTTG
1 TAGGCCAGCTCTTAATTGGGTAACCACACAAATTAGGTAATTAAGTTTG-TTCATTGTTCTTG
*
81091732 TAGGCCAGCTCTTAATTGGGTAACCACACAAATTAGGTAATTAAGTTTGTTCATTGTTTTTG
1 TAGGCCAGCTCTTAATTGGGTAACCACACAAATTAGGTAATTAAGTTTGTTCATTGTTCTTG
81091794 TAG
1 TAG
81091797 TCTCCCACAT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
62 15 0.25
63 46 0.75
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (62 bp):
TAGGCCAGCTCTTAATTGGGTAACCACACAAATTAGGTAATTAAGTTTGTTCATTGTTCTTG
Found at i:81091861 original size:21 final size:21
Alignment explanation
Indices: 81091837--81091880 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
81091827 GAGAAACTAC
81091837 TAAATC-ACTCTTATATTTTTA
1 TAAATCTACT-TTATATTTTTA
81091858 TAAATCTACTTTATATTTTTA
1 TAAATCTACTTTATATTTTTA
81091879 TA
1 TA
81091881 TTATTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (21 bp):
TAAATCTACTTTATATTTTTA
Found at i:81103488 original size:2 final size:2
Alignment explanation
Indices: 81103481--81103506 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
81103471 TGTTGTCCGG
81103481 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
81103507 GAATTTAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81112797 original size:47 final size:47
Alignment explanation
Indices: 81112743--81112872 Score: 188
Period size: 47 Copynumber: 2.8 Consensus size: 47
81112733 ACAATCGATA
*
81112743 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCCCGG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCGG
* * * *
81112790 AGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCGG
* * *
81112837 AATACCTATACCATGGCCCCTAGCTAAATCAAGGTA
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTA
81112873 TTATTCGCAC
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 75 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCCGG
Found at i:81115579 original size:487 final size:487
Alignment explanation
Indices: 81114666--81115643 Score: 1769
Period size: 487 Copynumber: 2.0 Consensus size: 487
81114656 GGGAATGCAT
* *
81114666 CTACTCAGGGAAGTTATAATCTAAGACAAGGAAATTATACTCAAGAACAGTAGAATTATAGTCAG
1 CTACTCAGGGAAGTTATAATCTAAGACAAGGAAATTATACTCAAAAACAGTAGAATTACAGTCAG
* *
81114731 CATCTTCAAAGGTATCAACAATAAGGTTAGACACAATCTCATCAAAATTAGATGCAACCACAACA
66 CATCTTCAAAGGTATCAACAACAAGGTTAGACACAATCTCATCAAAATCAGATGCAACCACAACA
* *
81114796 TTTTTTAATGATGATACAGAATATCCAAGGATAGTGACAACAACAGTATACACAAACTTCTATTT
131 TTTTTCAATGATGATACAGAATATCCAAGGATAGTGACAACAACAGTATACACAAACTTATATTT
81114861 CTGACCCATTGATTGCTCTTGAGGCGTTAATACGAGAGCATATTACTTGCACAAAAGCTATTGTT
196 CTGACCCATTGATTGCTCTTGAGGCGTTAATACGAGAGCATATTACTTGCACAAAAGCTATTGTT
* *
81114926 TAAGAAAATTCATCTTCCATTCGAGCATTGGAGGCAGAATTGGGACAACTTGCTTCATATCTGAA
261 TAAGAAAATCCATCTTCCATTCGAGCATTGGAGGCAGAATTAGGACAACTTGCTTCATATCTGAA
*
81114991 TATTAGACCACAAGGTGTAACACCTCACATCCGTACCCTATGCTGGGACGGAATACAAGGCATTA
326 TACTAGACCACAAGGTGTAACACCTCACATCCGTACCCTATGCTGGGACGGAATACAAGGCATTA
* *
81115056 CTTAACTTGAACACATACACTCACACGGTTCCCAGTCACCATAATTAGTACAAATTTAAAACTTT
391 CTTAACTTGAACACATACACTCACACGGCTCCCAGTCACCATAATTAGGACAAATTTAAAACTTT
81115121 TCCGATCTTTATCAAAACTCCATAATAAATGC
456 TCCGATCTTTATCAAAACTCCATAATAAATGC
*
81115153 CTACTCAGGGCAA-TTATAATCTAAGACAAGGAAATTATACTCAAAAACAGTAGAATTACAGTTA
1 CTACTCAGGG-AAGTTATAATCTAAGACAAGGAAATTATACTCAAAAACAGTAGAATTACAGTCA
*
81115217 GCATCTTCAAAGGTATCAACAACAAGGTTAGACACAATCTCATCAAAATCAGATGCTACCACAAC
65 GCATCTTCAAAGGTATCAACAACAAGGTTAGACACAATCTCATCAAAATCAGATGCAACCACAAC
* *
81115282 ATTTTTCAATGATGATATAGAATATCCAAGGATAGTGACAACAATAGTATACACAAACTTATATT
130 ATTTTTCAATGATGATACAGAATATCCAAGGATAGTGACAACAACAGTATACACAAACTTATATT
81115347 TCTGACCCATTGATTGCTCTTGAGGCGTTAATACGAGAGCATATTACTTGCACAAAAGCTATTGT
195 TCTGACCCATTGATTGCTCTTGAGGCGTTAATACGAGAGCATATTACTTGCACAAAAGCTATTGT
*
81115412 TTAAGAAAATCCATCTTCCATTCGAGCATTGGAGGCTGAATTAGGACAACTTGCTTCATATCTGA
260 TTAAGAAAATCCATCTTCCATTCGAGCATTGGAGGCAGAATTAGGACAACTTGCTTCATATCTGA
*
81115477 ATACTAGACCACAAGGTGTAACACCTCACATCCGTGCCCTATGCTGGGACGGAATACAAGGCATT
325 ATACTAGACCACAAGGTGTAACACCTCACATCCGTACCCTATGCTGGGACGGAATACAAGGCATT
81115542 ACTTAACTTGAACACATACACTCACACGGCTCCCAGTCACCATAATTAGGACAAATTTAAAACTT
390 ACTTAACTTGAACACATACACTCACACGGCTCCCAGTCACCATAATTAGGACAAATTTAAAACTT
**
81115607 TTCCGATCTTTATCAAAACTTTATAATAAATGC
455 TTCCGATCTTTATCAAAACTCCATAATAAATGC
81115640 CTAC
1 CTAC
81115644 GAGGATTTAA
Statistics
Matches: 471, Mismatches: 19, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
487 469 1.00
488 2 0.00
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (487 bp):
CTACTCAGGGAAGTTATAATCTAAGACAAGGAAATTATACTCAAAAACAGTAGAATTACAGTCAG
CATCTTCAAAGGTATCAACAACAAGGTTAGACACAATCTCATCAAAATCAGATGCAACCACAACA
TTTTTCAATGATGATACAGAATATCCAAGGATAGTGACAACAACAGTATACACAAACTTATATTT
CTGACCCATTGATTGCTCTTGAGGCGTTAATACGAGAGCATATTACTTGCACAAAAGCTATTGTT
TAAGAAAATCCATCTTCCATTCGAGCATTGGAGGCAGAATTAGGACAACTTGCTTCATATCTGAA
TACTAGACCACAAGGTGTAACACCTCACATCCGTACCCTATGCTGGGACGGAATACAAGGCATTA
CTTAACTTGAACACATACACTCACACGGCTCCCAGTCACCATAATTAGGACAAATTTAAAACTTT
TCCGATCTTTATCAAAACTCCATAATAAATGC
Found at i:81115919 original size:13 final size:13
Alignment explanation
Indices: 81115901--81115925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81115891 CTTGGCACAT
81115901 GCCCGTGTCCTTG
1 GCCCGTGTCCTTG
81115914 GCCCGTGTCCTT
1 GCCCGTGTCCTT
81115926 CACACGGCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.28, T:0.32
Consensus pattern (13 bp):
GCCCGTGTCCTTG
Found at i:81116983 original size:46 final size:44
Alignment explanation
Indices: 81116897--81117016 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 44
81116887 GTAGGATGCT
*
81116897 GATGCCATGACCTAGACATGGTCTTACACTGGTTCATCTCGTA-ACC
1 GATG-CATGTCCTAGACAT-GTCTTACACTGGTTCATCTCG-AGACC
*
81116943 GATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCTAGACATGTCTTACACTGG-TT-CATCTCGAGACC
*
81116989 GATGCATGTGCTAGACATGTCTTACACT
1 GATGCATGTCCTAGACATGTCTTACACT
81117017 AGCTCTTGTC
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
44 12 0.18
45 16 0.24
46 40 0.59
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCTAGACATGTCTTACACTGGTTCATCTCGAGACC
Found at i:81117036 original size:46 final size:46
Alignment explanation
Indices: 81116897--81117114 Score: 144
Period size: 46 Copynumber: 4.7 Consensus size: 46
81116887 GTAGGATGCT
* *
81116897 GATGCCATGACCTAGACATGGTCTTACACT-GGTT-CATCTCGTAA--CC
1 GATG-CATGTCCTAGACAT-GTCTTACACTAGCTTACATCTC--AAGGCC
* *
81116943 GATGCATGTCCTAGACATGTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCTAGACATGTCTTACACTAGCTTACATCTCAAGGCC
* ** *
81116989 GATGCATGTGCTAGACATGTCTTACACTAGCTCT-TGTCTCAATGCC
1 GATGCATGTCCTAGACATGTCTTACACTAGCT-TACATCTCAAGGCC
* * * * * ** *
81117035 GATGCCATATCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTGGCT
1 GATG-CATGTCCTAGACAT-GTCTTACACTAGCT-TACAT-CTCAAGGCC
* *
81117083 GATGCATGTCCCAGAGATGTCTTACACTAGCT
1 GATGCATGTCCTAGACATGTCTTACACTAGCT
81117115 CACAATAACC
Statistics
Matches: 139, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 67 0.48
47 22 0.16
48 22 0.16
49 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCTAGACATGTCTTACACTAGCTTACATCTCAAGGCC
Found at i:81121745 original size:328 final size:328
Alignment explanation
Indices: 81121148--81121805 Score: 1244
Period size: 328 Copynumber: 2.0 Consensus size: 328
81121138 TCTTCGTGAC
81121148 GTAGTGAATTACCATTGGAACAAGTCGAATTTATTCAAGGTATGCAATAACAACATCATTCGTTG
1 GTAGTGAATTACCATTGGAACAAGTCGAATTTATTCAAGGTATGCAATAACAACATCATTCGTTG
81121213 TTGTGTTTTAGAAGAAGAGATGCTTTCAATCCTGAAGCACTATCATGATGCTCCTTATGGAGGCC
66 TTGTGTTTTAGAAGAAGAGATGCTTTCAATCCTGAAGCACTATCATGATGCTCCTTATGGAGGCC
81121278 ATTTCGGTGGTATGAGAACTGCTGCTAAGGTTCTATAATCAGGATTCTACTGGCCATCATTGTTC
131 ATTTCGGTGGTATGAGAACTGCTGCTAAGGTTCTATAATCAGGATTCTACTGGCCATCATTGTTC
*
81121343 AAAGATTCTCATAATTTTATGAATCAATGCAATAAATGTCAGCACAACGGTTCTATTTCCCGACA
196 AAAGATTCTCATAATTTTATGAATCAATACAATAAATGTCAGCACAACGGTTCTATTTCCCGACA
* *
81121408 TAATGAAATGTTGCAACTGCCAATTATGGAAGTTGAATTGTTTGATGTTTGGGGACTGGATTTTA
261 TAATGAAATGTTGCAACTGCCAATTATGGAAGTTGAATTGTTTGATGTTTAGGGAATGGATTTTA
81121473 TGG
326 TGG
* *
81121476 GTAGTGAATTACCATTGGAACGAGTCGAATTTATTCAAGGTATGCAATAACAACATCATTTGTTG
1 GTAGTGAATTACCATTGGAACAAGTCGAATTTATTCAAGGTATGCAATAACAACATCATTCGTTG
* *
81121541 TTGTGTTTTGGAAGAAGAGATGCTTTCAATCCTGAAGCACTGTCATGATGCTCCTTATGGAGGCC
66 TTGTGTTTTAGAAGAAGAGATGCTTTCAATCCTGAAGCACTATCATGATGCTCCTTATGGAGGCC
81121606 ATTTCGGTGGTATGAGAACTGCTGCTAAGGTTCTATAATCAGGATTCTACTGGCCATCATTGTTC
131 ATTTCGGTGGTATGAGAACTGCTGCTAAGGTTCTATAATCAGGATTCTACTGGCCATCATTGTTC
*
81121671 AAAGATTCTCATAATTTTGTGAATCAATACAATAAATGTCAGCACAACGGTTCTATTTCCCGACA
196 AAAGATTCTCATAATTTTATGAATCAATACAATAAATGTCAGCACAACGGTTCTATTTCCCGACA
81121736 TAATGAAATGTTGCAACTGCCAATTATGGAAGTTGAATTGTTTGATGTTTAGGGAATGGATTTTA
261 TAATGAAATGTTGCAACTGCCAATTATGGAAGTTGAATTGTTTGATGTTTAGGGAATGGATTTTA
81121801 TGG
326 TGG
81121804 GT
1 GT
81121806 CCGTTTCCAA
Statistics
Matches: 322, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
328 322 1.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (328 bp):
GTAGTGAATTACCATTGGAACAAGTCGAATTTATTCAAGGTATGCAATAACAACATCATTCGTTG
TTGTGTTTTAGAAGAAGAGATGCTTTCAATCCTGAAGCACTATCATGATGCTCCTTATGGAGGCC
ATTTCGGTGGTATGAGAACTGCTGCTAAGGTTCTATAATCAGGATTCTACTGGCCATCATTGTTC
AAAGATTCTCATAATTTTATGAATCAATACAATAAATGTCAGCACAACGGTTCTATTTCCCGACA
TAATGAAATGTTGCAACTGCCAATTATGGAAGTTGAATTGTTTGATGTTTAGGGAATGGATTTTA
TGG
Found at i:81130216 original size:6 final size:6
Alignment explanation
Indices: 81130202--81130239 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
81130192 TATCAACTAC
*
81130202 ATCTTT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT AT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT AT
81130240 ACATACACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.53
Consensus pattern (6 bp):
ATCTAT
Found at i:81131077 original size:24 final size:25
Alignment explanation
Indices: 81131048--81131105 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 25
81131038 ATTCCATATC
81131048 ACATTC-ACCTCAATTAACTACTAA
1 ACATTCTACCTCAATTAACTACTAA
81131072 ACATTCCTTGACCTCAATTAACTACTAA
1 ACATT-C-T-ACCTCAATTAACTACTAA
81131100 ACATTC
1 ACATTC
81131106 CTTGATTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 5 0.17
25 1 0.03
27 1 0.03
28 23 0.77
ACGTcount: A:0.38, C:0.29, G:0.02, T:0.31
Consensus pattern (25 bp):
ACATTCTACCTCAATTAACTACTAA
Found at i:81131094 original size:28 final size:28
Alignment explanation
Indices: 81131054--81131110 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
81131044 TATCACATTC
81131054 ACCTCAATTAACTACTAAACATTCCTTG
1 ACCTCAATTAACTACTAAACATTCCTTG
81131082 ACCTCAATTAACTACTAAACATTCCTTG
1 ACCTCAATTAACTACTAAACATTCCTTG
81131110 A
1 A
81131111 TTAATTCCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.32
Consensus pattern (28 bp):
ACCTCAATTAACTACTAAACATTCCTTG
Found at i:81133673 original size:21 final size:21
Alignment explanation
Indices: 81133649--81133689 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81133639 ATCTTTTCTA
*
81133649 AAGTTAAAAGTCAAAACTATT
1 AAGTTAAAAGGCAAAACTATT
*
81133670 AAGTTGAAAGGCAAAACTAT
1 AAGTTAAAAGGCAAAACTAT
81133690 GTCGTTTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.24
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATT
Found at i:81135679 original size:7 final size:7
Alignment explanation
Indices: 81135667--81135700 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
81135657 AATTAATTAG
81135667 AATTTTA
1 AATTTTA
81135674 AATTTTA
1 AATTTTA
81135681 AATTTTA
1 AATTTTA
*
81135688 AATTTTG
1 AATTTTA
81135695 AATTTT
1 AATTTT
81135701 TAATAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (7 bp):
AATTTTA
Found at i:81143782 original size:34 final size:34
Alignment explanation
Indices: 81143715--81143784 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
81143705 AAGTTGTCAT
* *
81143715 CAAGCTAACTAAACAAGTCATTCAGCTATCTAAA
1 CAAGCTAACTAAACAAGTCATTCAACTACCTAAA
*
81143749 CAAGCTAACTAAACAAGTCATTCAATTACCTAAA
1 CAAGCTAACTAAACAAGTCATTCAACTACCTAAA
81143783 CA
1 CA
81143785 CATCAAGCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.46, C:0.24, G:0.07, T:0.23
Consensus pattern (34 bp):
CAAGCTAACTAAACAAGTCATTCAACTACCTAAA
Found at i:81153521 original size:48 final size:48
Alignment explanation
Indices: 81153465--81153563 Score: 171
Period size: 48 Copynumber: 2.1 Consensus size: 48
81153455 TACTTTTACA
*
81153465 AGTACGTCCTCTATAATACCCTTAGGATATTTAACAGATCAATCAGCT
1 AGTACGTCCTCTATAATACCCCTAGGATATTTAACAGATCAATCAGCT
* *
81153513 AGTACGTCCTTTATAATACCCCTAGGATATTTAACAGATCAATTAGCT
1 AGTACGTCCTCTATAATACCCCTAGGATATTTAACAGATCAATCAGCT
81153561 AGT
1 AGT
81153564 TGAATACTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.32
Consensus pattern (48 bp):
AGTACGTCCTCTATAATACCCCTAGGATATTTAACAGATCAATCAGCT
Found at i:81158832 original size:21 final size:20
Alignment explanation
Indices: 81158803--81158842 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
81158793 CTTTGACATA
81158803 GGGCACACGCCCGTGTGGAT
1 GGGCACACGCCCGTGTGGAT
*
81158823 GGGCAACACGCTCGTGTGGA
1 GGGC-ACACGCCCGTGTGGA
81158843 ACTTGAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.17, C:0.28, G:0.40, T:0.15
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAT
Found at i:81164795 original size:96 final size:96
Alignment explanation
Indices: 81164630--81165025 Score: 305
Period size: 96 Copynumber: 4.1 Consensus size: 96
81164620 ATTGAATGGT
* * * *
81164630 AACATGGCATCAGCCTCGATATGTGTCAGTGTAAGACCAAGTCTGGGACATGCCATCGGCGCCGA
1 AACATGGCATCAACCTCGATATGTGTCAGTGTAAGACCAAGTCTAGGACATGACATCGGCACCGA
** * *
81164695 TTTATGAGAGTTAGTGTGAGACCATGTTTGG
66 TTTATGAGAGCCAGTGTAAGAACATGTTTGG
* * * * * *
81164726 GACATGGCATCAACCTCGATATGTGTCAGTGTAAGACTATGTCTAGGACATGACATCGGTACTGG
1 AACATGGCATCAACCTCGATATGTGTCAGTGTAAGACCAAGTCTAGGACATGACATCGGCACCGA
81164791 TTTATGAGAGCCAGTGTAAGAACATGTTTGG
66 TTTATGAGAGCCAGTGTAAGAACATGTTTGG
*** * * * * * * * * *
81164822 AACATGGCATTGGCATTGTTATGTGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCAGC-CT
1 AACATGGCATCAACCTCGATATGT--GTCAGTGTAAGACCAAGTCTAGGACATGACATCGGCAC-
* * *
81164886 C-A-ATAT-ACGAGCTAGTGTAAGACCATGTTTGG
63 CGATTTATGA-GAGCCAGTGTAAGAACATGTTTGG
* **** * * * * * *
81164918 AACTTGGCATCGGTATTGTTATATGTGTCATTGTAAGACCATGTCTGGGCCATGGCATCGGCACC
1 AACATGGCATCAACCTCG--ATATGTGTCAGTGTAAGACCAAGTCTAGGACATGACATCGGCACC
* * * *
81164983 GATGTATGAGAGCTAGTGTAAGACCATGTTCGG
64 GATTTATGAGAGCCAGTGTAAGAACATGTTTGG
*
81165016 GACATGGCAT
1 AACATGGCAT
81165026 TGGCATTTTA
Statistics
Matches: 244, Mismatches: 46, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
95 1 0.00
96 171 0.70
97 3 0.01
98 68 0.28
99 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (96 bp):
AACATGGCATCAACCTCGATATGTGTCAGTGTAAGACCAAGTCTAGGACATGACATCGGCACCGA
TTTATGAGAGCCAGTGTAAGAACATGTTTGG
Found at i:81164808 original size:50 final size:48
Alignment explanation
Indices: 81164752--81164867 Score: 119
Period size: 50 Copynumber: 2.4 Consensus size: 48
81164742 CGATATGTGT
*
81164752 CAGTGTAAGACTATGTCTAGG-ACATGACATCGGTACTGGTTTATGAGAGC
1 CAGTGTAAGAC-ATGTCTAGGAACATGACATCGGCA-TGG-TTATGAGAGC
* * * * *
81164802 CAGTGTAAGAACATGT-TTGGAACATGGCATTGGCATTGTTATGTGAGC
1 CAGTGTAAG-ACATGTCTAGGAACATGACATCGGCATGGTTATGAGAGC
81164850 CAGTGTAAGACCATGTCT
1 CAGTGTAAGA-CATGTCT
81164868 GGGATATGGC
Statistics
Matches: 56, Mismatches: 6, Indels: 9
0.79 0.08 0.13
Matches are distributed among these distances:
47 1 0.02
48 23 0.41
49 6 0.11
50 24 0.43
51 2 0.04
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (48 bp):
CAGTGTAAGACATGTCTAGGAACATGACATCGGCATGGTTATGAGAGC
Found at i:81164855 original size:48 final size:48
Alignment explanation
Indices: 81164656--81165032 Score: 231
Period size: 48 Copynumber: 7.8 Consensus size: 48
81164646 CGATATGTGT
* * * *** *
81164656 CAGTGTAAGACCAAGTCTGGGACATGCCATCGGCGCCGATTTATGAGAGT
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG--TTATGAGAGC
* * ** * * * * *
81164706 TAGTGTGAGACCATGTTTGGGACATGGCATCAACCTCGATAT--GTGT
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGAGAGC
* * * * * *
81164752 CAGTGTAAGACTATGTCTAGGACATGACATCGGTACTGGTTTATGAGAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TTG-TTATGAGAGC
* * * *
81164802 CAGTGTAAGAACATGTTTGGAACATGGCATTGGCATTGTTATGTGAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGAGAGC
* * * * ***
81164850 CAGTGTAAGACCATGTCTGGGATATGGCATCAGCCTCAATAT-ACGAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGA-GAGC
* * * * * *
81164898 TAGTGTAAGACCATGTTTGGAACTTGGCATCGGTATTGTTAT-ATGTGT
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGA-GAGC
* * * **
81164946 CATTGTAAGACCATGTCTGGGCCATGGCATCGGCACCGATGTATGAGAGC
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG-T-TATGAGAGC
* * *
81164996 TAGTGTAAGACCATGTTCGGGACATGGCATTGGCATT
1 CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATT
81165033 TTACCTTTTT
Statistics
Matches: 240, Mismatches: 79, Indels: 16
0.72 0.24 0.05
Matches are distributed among these distances:
46 28 0.12
47 2 0.01
48 114 0.47
49 3 0.01
50 92 0.38
51 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
CAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTATGAGAGC
Found at i:81170015 original size:57 final size:57
Alignment explanation
Indices: 81169897--81170267 Score: 290
Period size: 57 Copynumber: 6.5 Consensus size: 57
81169887 TTCCTTTTTT
* * *** * * *
81169897 AGAGGTT-GCCATAAACGCTTTCCTTTATGGAGGTTTTCCACAAAGGCATTCCTTTT
1 AGAGGTTCGCCACAAAGGCTTTCCTTTGCAGAGGTTTTCCACAAAGACTTTCCTTTC
* * * * *
81169953 GGAGGTTCACCACAAAGGCTTACCTTTGTAGAGGTTTTCCACAAAGACTTTCCGTTC
1 AGAGGTTCGCCACAAAGGCTTTCCTTTGCAGAGGTTTTCCACAAAGACTTTCCTTTC
* * * * * *
81170010 AGAGGTTCGCCATAACA-GTTTTCCTTTACAAAGGTTTGCCACAAA-ATTTTTCCTTTC
1 AGAGGTTCGCCACAA-AGGCTTTCCTTTGCAGAGGTTTTCCACAAAGA-CTTTCCTTTC
* * * * * *
81170067 AGAGGTTTGCCACAAATGCTTTTCGTTATG--GAGGTTTTCCATAAAGGCTTACCTTTC
1 AGAGGTTCGCCACAAAGGC-TTTCCTT-TGCAGAGGTTTTCCACAAAGACTTTCCTTTC
* * *
81170124 AGAGGTTTGCCACAAAGGCTATCCTTTGCAGAGG-TTTCCACAAAGGCTTTCCTTTC
1 AGAGGTTCGCCACAAAGGCTTTCCTTTGCAGAGGTTTTCCACAAAGACTTTCCTTTC
* * * * * **
81170180 AAAGGATT-TCCACAAAGGTTTTCTTTTGCAGAGGTTTGT-CATAAAGACTTTCCTTAA
1 AGAGG-TTCGCCACAAAGGCTTTCCTTTGCAGAGGTTT-TCCACAAAGACTTTCCTTTC
* * *
81170237 AAAGGTTTGCCATAAAGGCTTTCCTTTGCAG
1 AGAGGTTCGCCACAAAGGCTTTCCTTTGCAG
81170268 TTATGATCTT
Statistics
Matches: 251, Mismatches: 51, Indels: 25
0.77 0.16 0.08
Matches are distributed among these distances:
55 2 0.01
56 61 0.24
57 179 0.71
58 8 0.03
59 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (57 bp):
AGAGGTTCGCCACAAAGGCTTTCCTTTGCAGAGGTTTTCCACAAAGACTTTCCTTTC
Found at i:81170212 original size:85 final size:85
Alignment explanation
Indices: 81169897--81170263 Score: 268
Period size: 85 Copynumber: 4.3 Consensus size: 85
81169887 TTCCTTTTTT
* * **
81169897 AGAGG-TTGCCATAAACGCTTTCCTTT-ATGGAGGTTTTCCACAAAGGCATTCCTTTTG--GAGG
1 AGAGGTTTGCCACAAAGGCTTTCCTTTCA--GAGG-TTTCCACAAAGGTTTTCC-TTTGCAGAGG
** * *
81169958 TTCACCACAAAGGCTTACCTTTGT
62 TTTGCCACAAAGGCTTTCCTTTGC
* * * * * * *
81169982 AGAGGTTTTCCACAAAGACTTTCCGTTCAGAGGTTCGCCATAACA-GTTTTCCTTTACAAAGGTT
1 AGAGGTTTGCCACAAAGGCTTTCCTTTCAGAGGTT-TCCACAA-AGGTTTTCCTTTGCAGAGGTT
***
81170046 TGCCACAAAATTTTTCCTTT-C
64 TGCCACAAAGGCTTTCCTTTGC
* * * * * *
81170067 AGAGGTTTGCCACAAATGCTTTTCGTTAT-GGAGGTTTTCCATAAAGGCTTACCTTT-CAGAGGT
1 AGAGGTTTGCCACAAAGGC-TTTCCTT-TCAGAGG-TTTCCACAAAGGTTTTCCTTTGCAGAGGT
*
81170130 TTGCCACAAAGGCTATCCTTTGC
63 TTGCCACAAAGGCTTTCCTTTGC
* *
81170153 AGAGGTTT-CCACAAAGGCTTTCCTTTCAAAGGATTTCCACAAAGGTTTTCTTTTGCAGAGGTTT
1 AGAGGTTTGCCACAAAGGCTTTCCTTTCAGAGG-TTTCCACAAAGGTTTTCCTTTGCAGAGGTTT
* * * **
81170217 GTCATAAAGACTTTCC-TTAA
65 GCCACAAAGGCTTTCCTTTGC
* *
81170237 AAAGGTTTGCCATAAAGGCTTTCCTTT
1 AGAGGTTTGCCACAAAGGCTTTCCTTT
81170264 GCAGTTATGA
Statistics
Matches: 219, Mismatches: 49, Indels: 28
0.74 0.17 0.09
Matches are distributed among these distances:
83 1 0.00
84 40 0.18
85 106 0.48
86 68 0.31
87 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (85 bp):
AGAGGTTTGCCACAAAGGCTTTCCTTTCAGAGGTTTCCACAAAGGTTTTCCTTTGCAGAGGTTTG
CCACAAAGGCTTTCCTTTGC
Found at i:81170225 original size:29 final size:27
Alignment explanation
Indices: 81169897--81170263 Score: 227
Period size: 28 Copynumber: 13.0 Consensus size: 27
81169887 TTCCTTTTTT
* * *
81169897 AGAGGTTGCCATAAACGCTTTCCTTT-
1 AGAGGTTTCCACAAAGGCTTTCCTTTC
* *
81169923 ATGGAGGTTTTCCACAAAGGCATTCCTTTT
1 A--GAGG-TTTCCACAAAGGCTTTCCTTTC
* * * *
81169953 GGAGGTTCACCACAAAGGCTTACCTTTGT
1 AGAGGTT-TCCACAAAGGCTTTCCTTT-C
* *
81169982 AGAGGTTTTCCACAAAGACTTTCCGTTC
1 AGAGG-TTTCCACAAAGGCTTTCCTTTC
* * *
81170010 AGAGGTTCGCCATAACA-GTTTTCCTTTAC
1 AGAGGTT-TCCACAA-AGGCTTTCCTTT-C
* ***
81170039 AAAGGTTTGCCACAAAATTTTTCCTTTC
1 AGAGGTTT-CCACAAAGGCTTTCCTTTC
* *
81170067 AGAGGTTTGCCACAAATGCTTTTCGTTAT-
1 AGAGGTTT-CCACAAAGGC-TTTCCTT-TC
* * *
81170096 GGAGGTTTTCCATAAAGGCTTACCTTTC
1 AGAGG-TTTCCACAAAGGCTTTCCTTTC
*
81170124 AGAGGTTTGCCACAAAGGCTATCCTTTGC
1 AGAGGTTT-CCACAAAGGCTTTCCTTT-C
81170153 AGAGGTTTCCACAAAGGCTTTCCTTTC
1 AGAGGTTTCCACAAAGGCTTTCCTTTC
* * *
81170180 AAAGGATTTCCACAAAGGTTTTCTTTTGC
1 AGAGG-TTTCCACAAAGGCTTTCCTTT-C
* * * **
81170209 AGAGGTTTGTCATAAAGACTTTCCTTAA
1 AGAGGTTT-CCACAAAGGCTTTCCTTTC
* *
81170237 AAAGGTTTGCCATAAAGGCTTTCCTTT
1 AGAGGTTT-CCACAAAGGCTTTCCTTT
81170264 GCAGTTATGA
Statistics
Matches: 267, Mismatches: 53, Indels: 40
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.00
27 13 0.05
28 144 0.54
29 103 0.39
30 6 0.02
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
AGAGGTTTCCACAAAGGCTTTCCTTTC
Found at i:81173051 original size:28 final size:28
Alignment explanation
Indices: 81172989--81173291 Score: 299
Period size: 28 Copynumber: 10.8 Consensus size: 28
81172979 ATTCCAGAGA
* *
81172989 TTGCCAC-AAGGCTATCTTTTTCAGAGG-
1 TTGCCACAAAGGCTTTCCTTTT-AGAGGT
*
81173016 TTGCCACAAATGCTTTCCTTTTAGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* * *
81173044 TTTCCACAAAGGCTTTCATTTAAGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* * *
81173072 TTGCCACAAAGGCCTTCCTTTACAAAGGT
1 TTGCCACAAAGGCTTTCCTTT-TAGAGGT
*
81173101 TTGCCACAAAGGTTTTCCTTTTAGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* *
81173129 TCGCCATAAAGGCTTT-CTTTTACAGAGGT
1 TTGCCACAAAGGCTTTCCTTTT--AGAGGT
81173158 TTGCCACAAAGGCTTTCCTTTTAGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
** * * *
81173186 TCACCATAAAGGTTTTCC-TTTACGGAGTT
1 TTGCCACAAAGGCTTTCCTTTTA--GAGGT
* * *
81173215 TTTCCACAGAGGCTTTCCTTTTAAAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
* * * *
81173243 TTGCCATAAAGGTTTTCCTTTCAGAGGC
1 TTGCCACAAAGGCTTTCCTTTTAGAGGT
*
81173271 TCGCCACAAAGGCTTTCCTTT
1 TTGCCACAAAGGCTTTCCTTT
81173292 CTCTAGGGCG
Statistics
Matches: 224, Mismatches: 43, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
27 21 0.09
28 133 0.59
29 61 0.27
30 9 0.04
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (28 bp):
TTGCCACAAAGGCTTTCCTTTTAGAGGT
Found at i:81173118 original size:85 final size:84
Alignment explanation
Indices: 81172989--81173291 Score: 344
Period size: 85 Copynumber: 3.6 Consensus size: 84
81172979 ATTCCAGAGA
* * *
81172989 TTGCCAC-AAGGCTATCTTTTTCAGAGGTT-GCCACAAATGCTTTCCTTTTAGAGGTTTTCCACA
1 TTGCCACAAAGGCTTTC-CTTTCAGAGGTTCGCCACAAAGGCTTTCCTTTTAGAGGTTTTCCACA
*
81173052 AAGGCTTTCATTTAAGAGGT
65 AAGGCTTTCTTTTAAGAGGT
* * * * ** *
81173072 TTGCCACAAAGGCCTTCCTTTACAAAGGTTTGCCACAAAGGTTTTCCTTTTAGAGGTTCGCCATA
1 TTGCCACAAAGGCTTTCCTTT-CAGAGGTTCGCCACAAAGGCTTTCCTTTTAGAGGTTTTCCACA
81173137 AAGGCTTTCTTTTACAGAGGT
65 AAGGCTTTCTTTTA-AGAGGT
* * * * *
81173158 TTGCCACAAAGGCTTTCCTTTTAGAGGTTCACCATAAAGGTTTTCC-TTTACGGAGTTTTTCCAC
1 TTGCCACAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTTCCTTTTA--GAGGTTTTCCAC
*
81173222 AGAGGCTTTCCTTTTAA-AGGT
64 AAAGGCTTT-CTTTTAAGAGGT
* * *
81173243 TTGCCATAAAGGTTTTCCTTTCAGAGGCTCGCCACAAAGGCTTTCCTTT
1 TTGCCACAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTTCCTTT
81173292 CTCTAGGGCG
Statistics
Matches: 184, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
83 10 0.05
84 18 0.10
85 105 0.57
86 45 0.24
87 6 0.03
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (84 bp):
TTGCCACAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTTCCTTTTAGAGGTTTTCCACAA
AGGCTTTCTTTTAAGAGGT
Found at i:81173127 original size:57 final size:57
Alignment explanation
Indices: 81172989--81173291 Score: 344
Period size: 57 Copynumber: 5.4 Consensus size: 57
81172979 ATTCCAGAGA
* * * * *
81172989 TTGCCAC-AAGGCTATCTTTTTCAGAGG-TTGCCACAAATGCTTTCCTTT-TAGAGGT
1 TTGCCACAAAGGCTTTCCTTTT-AGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
* * * * * *
81173044 TTTCCACAAAGGCTTTCATTTAAGAGGTTTGCCACAAAGGCCTTCCTTTACAAAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
* * *
81173101 TTGCCACAAAGGTTTTCCTTTTAGAGGTTCGCCATAAAGGCTTTCTTTTACAGAGGT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
** * * *
81173158 TTGCCACAAAGGCTTTCCTTTTAGAGGTTCACCATAAAGGTTTTCCTTTACGGAGTT
1 TTGCCACAAAGGCTTTCCTTTTAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
* * * * *
81173215 TTTCCACAGAGGCTTTCCTTTTAAAGGTTTGCCATAAAGGTTTTCCTTT-CAGAGGC
1 TTGCCACAAAGGCTTTCCTTTTAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
*
81173271 TCGCCACAAAGGCTTTCCTTT
1 TTGCCACAAAGGCTTTCCTTT
81173292 CTCTAGGGCG
Statistics
Matches: 211, Mismatches: 34, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
55 11 0.05
56 52 0.25
57 148 0.70
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (57 bp):
TTGCCACAAAGGCTTTCCTTTTAGAGGTTTGCCATAAAGGCTTTCCTTTACAGAGGT
Found at i:81174107 original size:22 final size:22
Alignment explanation
Indices: 81174061--81174110 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
81174051 ATACCGCTGA
81174061 ACCACCATACCACCACCCTAAC
1 ACCACCATACCACCACCCTAAC
* * **
81174083 ACCACTATATCACCACCCTTGC
1 ACCACCATACCACCACCCTAAC
81174105 ACCACC
1 ACCACC
81174111 TTGAAATACC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.32, C:0.52, G:0.02, T:0.14
Consensus pattern (22 bp):
ACCACCATACCACCACCCTAAC
Found at i:81180183 original size:22 final size:21
Alignment explanation
Indices: 81180131--81180184 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
81180121 TCCAAGGTTG
*
81180131 CACGGGCGTGTCCCAAGGTCA
1 CACGGGCGTGTCCCAAGGCCA
* * **
81180152 CAAGGCCGTGTCCCTTGGACCA
1 CACGGGCGTGTCCCAAGG-CCA
81180174 CACGGGCGTGT
1 CACGGGCGTGT
81180185 GAGCCCTGTA
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.17, C:0.33, G:0.33, T:0.17
Consensus pattern (21 bp):
CACGGGCGTGTCCCAAGGCCA
Found at i:81181361 original size:20 final size:22
Alignment explanation
Indices: 81181319--81181361 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
81181309 GCTTTTGACT
* *
81181319 CTTACAATTTTTTTTTGTGTTG
1 CTTACAATTTTTTATTCTGTTG
81181341 CTTAC-ATTTTTTATTCT-TTG
1 CTTACAATTTTTTATTCTGTTG
81181361 C
1 C
81181362 ACATTTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 10 0.53
22 5 0.26
ACGTcount: A:0.14, C:0.14, G:0.09, T:0.63
Consensus pattern (22 bp):
CTTACAATTTTTTATTCTGTTG
Found at i:81185504 original size:13 final size:13
Alignment explanation
Indices: 81185486--81185510 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81185476 TTCAACAAAA
81185486 ACTATATTAATTG
1 ACTATATTAATTG
81185499 ACTATATTAATT
1 ACTATATTAATT
81185511 ATAAATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48
Consensus pattern (13 bp):
ACTATATTAATTG
Found at i:81190122 original size:10 final size:10
Alignment explanation
Indices: 81190095--81190137 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
81190085 TTAAATTTTA
81190095 AAAGATAAAT
1 AAAGATAAAT
*
81190105 ACAA-ATAATT
1 A-AAGATAAAT
*
81190115 AAAGATAATT
1 AAAGATAAAT
81190125 AAAGATAAAT
1 AAAGATAAAT
81190135 AAA
1 AAA
81190138 ATTAAATCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 2 0.07
10 25 0.86
11 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:81190194 original size:14 final size:13
Alignment explanation
Indices: 81190158--81190195 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
81190148 AAAATTAAAT
81190158 CTAAATAATTATC
1 CTAAATAATTATC
*
81190171 CTTAATAATTATC
1 CTAAATAATTATC
81190184 CTAATATAATTA
1 CTAA-ATAATTA
81190196 AACATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:81195830 original size:16 final size:16
Alignment explanation
Indices: 81195805--81195835 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81195795 TCGGTTTAGC
*
81195805 TGTTTGTTTATTTTAT
1 TGTTTATTTATTTTAT
81195821 TGTTTATTTATTTTA
1 TGTTTATTTATTTTA
81195836 ATTATTTAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.74
Consensus pattern (16 bp):
TGTTTATTTATTTTAT
Found at i:81202924 original size:13 final size:13
Alignment explanation
Indices: 81202908--81202934 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81202898 ATATTCTCAG
81202908 AGTATAATGACAA
1 AGTATAATGACAA
81202921 AGTATAATGACAA
1 AGTATAATGACAA
81202934 A
1 A
81202935 TGTAAGTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (13 bp):
AGTATAATGACAA
Found at i:81203198 original size:38 final size:38
Alignment explanation
Indices: 81203147--81203260 Score: 228
Period size: 38 Copynumber: 3.0 Consensus size: 38
81203137 CTAAAAAGAC
81203147 CATTATATTTAGTTGTAATTTCTATTTTGTGTTTTATA
1 CATTATATTTAGTTGTAATTTCTATTTTGTGTTTTATA
81203185 CATTATATTTAGTTGTAATTTCTATTTTGTGTTTTATA
1 CATTATATTTAGTTGTAATTTCTATTTTGTGTTTTATA
81203223 CATTATATTTAGTTGTAATTTCTATTTTGTGTTTTATA
1 CATTATATTTAGTTGTAATTTCTATTTTGTGTTTTATA
81203261 AAGATTCTTA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 76 1.00
ACGTcount: A:0.24, C:0.05, G:0.11, T:0.61
Consensus pattern (38 bp):
CATTATATTTAGTTGTAATTTCTATTTTGTGTTTTATA
Found at i:81207100 original size:39 final size:39
Alignment explanation
Indices: 81207046--81207434 Score: 652
Period size: 39 Copynumber: 10.0 Consensus size: 39
81207036 AAGACACTGA
81207046 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
81207085 AAATGTATCCGGGCTAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
81207124 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
81207163 AAATGTATCCGCGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
81207202 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
81207241 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
81207280 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
81207319 AAATGTATCCGGCCCAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
81207358 AAATGTATCCGGGCCAAAGTCCCACAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
81207397 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
81207435 ATAATATAAT
Statistics
Matches: 330, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 330 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:81212567 original size:47 final size:47
Alignment explanation
Indices: 81212501--81212972 Score: 788
Period size: 47 Copynumber: 10.1 Consensus size: 47
81212491 GAAATGATAG
81212501 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
81212548 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
81212595 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
81212642 TAAGGCCTAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
81212690 TAAGGCCTAAT-ACCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
81212736 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
81212782 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
81212829 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
81212876 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
81212922 TAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
81212969 TAAG
1 TAAG
81212973 TCCCGAAGGG
Statistics
Matches: 405, Mismatches: 16, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
46 130 0.32
47 228 0.56
48 47 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:81212808 original size:93 final size:94
Alignment explanation
Indices: 81212501--81212972 Score: 788
Period size: 93 Copynumber: 5.0 Consensus size: 94
81212491 GAAATGATAG
*
81212501 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
81212566 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*
81212595 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAATGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATGGCCGA
*
81212660 TGTGATGAATGTGAAAGTGTATATGTGTGA
65 TGTGATGAATGTGAAAGTGTATATATGTGA
* *
81212690 TAAGGCCTAAT-ACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
81212754 GTGATGAATGTGAAAGTGTATATATGT-A
66 GTGATGAATGTGAAAGTGTATATATGTGA
81212782 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
81212847 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * * * *
81212876 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * *
81212940 GTGATGGATGTGAAAGTGCATAAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
81212969 TAAG
1 TAAG
81212973 TCCCGAAGGG
Statistics
Matches: 359, Mismatches: 16, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
92 12 0.03
93 181 0.50
94 117 0.33
95 49 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:81217360 original size:38 final size:39
Alignment explanation
Indices: 81217287--81217589 Score: 489
Period size: 37 Copynumber: 8.0 Consensus size: 39
81217277 GCAAGACACT
81217287 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
81217326 GAAATGTATCCGGGCTAAAGT-CCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
81217364 GAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
81217403 GAAA--TATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
81217440 GAAATATAT-C-GGCCAAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
81217477 GAAATGTAT-CGGGC-AAAGTCCCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
*
81217514 GAAATGTATCCGGGCCAAAGT-CCGCAGGCTTCGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
* *
81217552 GAAATGTATCC-GGTTAAAGTCCCGCAGGCTTTGTGCTG
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
81217590 ATAATATAAT
Statistics
Matches: 251, Mismatches: 6, Indels: 15
0.92 0.02 0.06
Matches are distributed among these distances:
37 111 0.44
38 90 0.36
39 50 0.20
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
Found at i:81220714 original size:17 final size:17
Alignment explanation
Indices: 81220694--81220726 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
81220684 ATTAAGAATG
81220694 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
81220711 TTATTAAATTATATTT
1 TTATTAAATTATATTT
81220727 ATTAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:81220729 original size:14 final size:15
Alignment explanation
Indices: 81220694--81220731 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
81220684 ATTAAGAATG
81220694 TTATTAAATTATATTTT
1 TTATTAAATTATA--TT
81220711 TTATTAAATTATA-T
1 TTATTAAATTATATT
81220725 TTATTAA
1 TTATTAA
81220732 TATTTATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
17 13 0.62
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTATTAAATTATATT
Found at i:81220995 original size:16 final size:16
Alignment explanation
Indices: 81220974--81221012 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81220964 TGAATAACTT
* *
81220974 ATTACAGCTCTATTTC
1 ATTACAGCACTATTCC
*
81220990 ATTACAACACTATTCC
1 ATTACAGCACTATTCC
81221006 ATTACAG
1 ATTACAG
81221013 TAAACCAAAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCACTATTCC
Found at i:81225743 original size:3 final size:3
Alignment explanation
Indices: 81225730--81225759 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
81225720 TAAAAACACA
81225730 AAT ACAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AA
81225760 CAACGCTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:81226892 original size:22 final size:22
Alignment explanation
Indices: 81226867--81226911 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
81226857 TGACCTAATT
** *
81226867 AATATAATTTTAATAGTTTAAA
1 AATATAATTAGAATAATTTAAA
81226889 AATATAATTAGAATAATTTAAA
1 AATATAATTAGAATAATTTAAA
81226911 A
1 A
81226912 CTACCAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (22 bp):
AATATAATTAGAATAATTTAAA
Found at i:81227353 original size:20 final size:20
Alignment explanation
Indices: 81227328--81227385 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
81227318 CAATAAAAGC
81227328 AATAAAAATTATTAAATATT
1 AATAAAAATTATTAAATATT
*
81227348 AATAAAAATT-TCAAATATT
1 AATAAAAATTATTAAATATT
* *
81227367 -A-AAAATTTATTAAAAATT
1 AATAAAAATTATTAAATATT
81227385 A
1 A
81227386 GAAAAAATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
17 6 0.19
18 8 0.25
19 8 0.25
20 10 0.31
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
AATAAAAATTATTAAATATT
Found at i:81227363 original size:19 final size:20
Alignment explanation
Indices: 81227328--81227368 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
81227318 CAATAAAAGC
*
81227328 AATAAAAATTATTAAATATT
1 AATAAAAATTATCAAATATT
81227348 AATAAAAATT-TCAAATATT
1 AATAAAAATTATCAAATATT
81227367 AA
1 AA
81227369 AAATTTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
AATAAAAATTATCAAATATT
Found at i:81227410 original size:19 final size:19
Alignment explanation
Indices: 81227378--81227459 Score: 58
Period size: 19 Copynumber: 4.3 Consensus size: 19
81227368 AAAATTTATT
*
81227378 AAAAATTAGAAAAAATATAA
1 AAAAATT-GTAAAAATATAA
* * *
81227398 AAAAATTGTAAAATTCTAT
1 AAAAATTGTAAAAATATAA
* *
81227417 AAAGATTGTAAAAGAT-TAT
1 AAAAATTGTAAAA-ATATAA
* * *
81227436 AAAATTTATAGAAATATAA
1 AAAAATTGTAAAAATATAA
81227455 AAAAA
1 AAAAA
81227460 ATTATAAATT
Statistics
Matches: 48, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
18 2 0.04
19 38 0.79
20 8 0.17
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.28
Consensus pattern (19 bp):
AAAAATTGTAAAAATATAA
Found at i:81227458 original size:29 final size:28
Alignment explanation
Indices: 81227389--81227467 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
81227379 AAAATTAGAA
*
81227389 AAAATATAAAAAAATTGTAAAATTCTAT
1 AAAATATAAAAAAATTATAAAATTCTAT
* *
81227417 AAAGAT-TGTAAAAGATTATAAAATT-TAT
1 AAA-ATAT-AAAAAAATTATAAAATTCTAT
81227445 AGAAATATAAAAAAAATTATAAA
1 A-AAATAT-AAAAAAATTATAAA
81227468 TTTTTAAAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
28 10 0.24
29 31 0.76
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.30
Consensus pattern (28 bp):
AAAATATAAAAAAATTATAAAATTCTAT
Found at i:81227826 original size:85 final size:87
Alignment explanation
Indices: 81227733--81227900 Score: 232
Period size: 86 Copynumber: 2.0 Consensus size: 87
81227723 ATAAGAGCAG
* * ** * *
81227733 GGGCTTAATTG-CTTTTTTGAAAAATTTTGAGGGTCTTTTTGATGTATTTTGAAAGTTCAAGTAC
1 GGGCTTAATTGACTTTTTTGAAAAAGTTCGAGGACCTTTTTGATGCATTTTAAAAGTTCAAGTAC
81227797 CCAATTGAGTG-AAAAAATCAA
66 CCAATTGAGTGTAAAAAATCAA
* * *
81227818 GGGCTTAATTGATTTTTTTGAAAAAGTTCGAGGACCTTTTTGATGCATTTTAAAAGTTGAAGTGC
1 GGGCTTAATTGACTTTTTTGAAAAAGTTCGAGGACCTTTTTGATGCATTTTAAAAGTTCAAGTAC
*
81227883 TCAATTGAGTGTAAAAAA
66 CCAATTGAGTGTAAAAAA
81227901 ATATGAGGTG
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 11 0.15
86 54 0.76
87 6 0.08
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (87 bp):
GGGCTTAATTGACTTTTTTGAAAAAGTTCGAGGACCTTTTTGATGCATTTTAAAAGTTCAAGTAC
CCAATTGAGTGTAAAAAATCAA
Found at i:81228593 original size:10 final size:10
Alignment explanation
Indices: 81228580--81228664 Score: 50
Period size: 10 Copynumber: 8.5 Consensus size: 10
81228570 ATTTTTATGG
81228580 TTTTTAATAA
1 TTTTTAATAA
81228590 TTTTTTAAT-A
1 -TTTTTAATAA
*
81228600 TATTTT-ATGA
1 T-TTTTAATAA
81228610 TTTTTAAATAA
1 TTTTT-AATAA
*
81228621 TTTCTAATAA
1 TTTTTAATAA
*
81228631 ATTTT-ATAA
1 TTTTTAATAA
* *
81228640 ATTTTAGTAA
1 TTTTTAATAA
** *
81228650 ACTTTAATGA
1 TTTTTAATAA
81228660 TTTTT
1 TTTTT
81228665 TTATTTTTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
9 16 0.27
10 28 0.47
11 15 0.25
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:81228629 original size:30 final size:30
Alignment explanation
Indices: 81228562--81228637 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
81228552 AAAAATCTTT
*
81228562 TTTTCTAA-AT-TTTTATGGTTTTTAATAA
1 TTTTCTAATATATTTTATGATTTTTAATAA
*
81228590 TTTTTTAATATATTTTATGATTTTTAAATAA
1 TTTTCTAATATATTTTATGATTTTT-AATAA
*
81228621 -TTTCTAATAAATTTTAT
1 TTTTCTAATATATTTTAT
81228638 AAATTTTAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 7 0.17
29 2 0.05
30 27 0.66
31 5 0.12
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.61
Consensus pattern (30 bp):
TTTTCTAATATATTTTATGATTTTTAATAA
Found at i:81228645 original size:30 final size:31
Alignment explanation
Indices: 81228580--81228645 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
81228570 ATTTTTATGG
* * * * *
81228580 TTTTTAATAATTTTTTAATATATTTTATGAT
1 TTTTAAATAATTTTCTAATAAATTTTATAAA
81228611 TTTTAAATAA-TTTCTAATAAATTTTATAAA
1 TTTTAAATAATTTTCTAATAAATTTTATAAA
81228641 TTTTA
1 TTTTA
81228646 GTAAACTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (31 bp):
TTTTAAATAATTTTCTAATAAATTTTATAAA
Found at i:81245765 original size:2 final size:2
Alignment explanation
Indices: 81245758--81245807 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
81245748 ATGTGCCAGC
81245758 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81245800 AT AT AT AT
1 AT AT AT AT
81245808 GGTGCCGACT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81248633 original size:21 final size:21
Alignment explanation
Indices: 81248608--81248651 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
81248598 CGTTCTCTCA
81248608 CACCACCAGAGTCAAGACACT
1 CACCACCAGAGTCAAGACACT
* * *
81248629 CACCACTAGATTCAGGACACT
1 CACCACCAGAGTCAAGACACT
81248650 CA
1 CA
81248652 TCACACTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.36, G:0.14, T:0.14
Consensus pattern (21 bp):
CACCACCAGAGTCAAGACACT
Found at i:81255339 original size:14 final size:15
Alignment explanation
Indices: 81255311--81255339 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81255301 TCACCTAATT
81255311 CATCCCAATTCCAAA
1 CATCCCAATTCCAAA
81255326 CATCCCAA-TCCAAA
1 CATCCCAATTCCAAA
81255340 TTACAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.17
Consensus pattern (15 bp):
CATCCCAATTCCAAA
Found at i:81257868 original size:20 final size:20
Alignment explanation
Indices: 81257835--81257884 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
81257825 TATCGATCTA
* * *
81257835 GTATCGATACATTTCTTAAG
1 GTATCAATATATTTCCTAAG
*
81257855 GTATTAATATATTTCCTAAG
1 GTATCAATATATTTCCTAAG
81257875 GTATCAATAT
1 GTATCAATAT
81257885 TCCTGCTCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (20 bp):
GTATCAATATATTTCCTAAG
Found at i:81264655 original size:48 final size:47
Alignment explanation
Indices: 81264489--81264713 Score: 157
Period size: 48 Copynumber: 4.9 Consensus size: 47
81264479 TACATAGTAA
* *
81264489 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATG-CATATCCTAGATATGGTCTTACACGAGATCACATATC
* * * *
81264537 GATG-C--TG-ATAGCCCA-ACTATAGTCTTACACGATG-TCTCATATC
1 GATGCCAATGCATATCCTAGA-TATGGTCTTACACGA-GATCACATATC
* * *
81264580 GATGCC-ATG--T-TCC-AGACATGGTATTACACGAAATCACATATC
1 GATGCCAATGCATATCCTAGATATGGTCTTACACGAGATCACATATC
* * * *
81264622 GATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCGCATATT
1 GATGCCAATG-CATATCCTAGATATGGTCTTACACGAGATCACATATC
* * * * * *
81264670 GATGCCAATGCTATGTCCTAAACATGTTCTTACATGGGATCACA
1 GATGCCAATGC-ATATCCTAGATATGGTCTTACACGAGATCACA
81264714 CATAACCCTA
Statistics
Matches: 140, Mismatches: 24, Indels: 26
0.74 0.13 0.14
Matches are distributed among these distances:
42 28 0.20
43 36 0.26
44 3 0.02
45 4 0.03
46 1 0.01
47 5 0.04
48 63 0.45
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (47 bp):
GATGCCAATGCATATCCTAGATATGGTCTTACACGAGATCACATATC
Found at i:81267320 original size:15 final size:15
Alignment explanation
Indices: 81267300--81267332 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
81267290 TGAGCCATGA
81267300 AAGGAAATCCAAGAT
1 AAGGAAATCCAAGAT
81267315 AAGGAAATCCAAGAT
1 AAGGAAATCCAAGAT
81267330 AAG
1 AAG
81267333 ATACCATACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.55, C:0.12, G:0.21, T:0.12
Consensus pattern (15 bp):
AAGGAAATCCAAGAT
Found at i:81271094 original size:50 final size:49
Alignment explanation
Indices: 81271020--81271115 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 49
81271010 AATTCTCATA
* *
81271020 TACATAGTAAGGTGCCAATGCCATATCCTAGATATGGTCTTACATGTCT
1 TACATAGTAAGATACCAATGCCATATCCTAGATATGGTCTTACATGTCT
81271069 TACATGAGTAAGATACCAATGCCATATCCTAGATATGGTCTTACATG
1 TACAT-AGTAAGATACCAATGCCATATCCTAGATATGGTCTTACATG
81271116 GGATCACATA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
49 5 0.11
50 39 0.89
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (49 bp):
TACATAGTAAGATACCAATGCCATATCCTAGATATGGTCTTACATGTCT
Found at i:81272026 original size:48 final size:48
Alignment explanation
Indices: 81271862--81272057 Score: 184
Period size: 48 Copynumber: 4.3 Consensus size: 48
81271852 ATACATATTA
* *
81271862 CGATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCACATA-
1 CGATGCCAATGCCATATCCCAGATATGGTCTTACATGAGATCACATAT
* * * *
81271909 C--TG---ATGCCGATAGCCCAGCTATTGTCTTACATGATG-TCTCATAT
1 CGATGCCAATGCC-ATATCCCAGATATGGTCTTACATGA-GATCACATAT
* *
81271953 CGATGCC-ATG-----TCCCAGACATGGTCTTACATGAAATCACATAT
1 CGATGCCAATGCCATATCCCAGATATGGTCTTACATGAGATCACATAT
* * *
81271995 CGATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCGCATAT
1 CGATGCCAATGCCATATCCCAGATATGGTCTTACATGAGATCACATAT
81272043 CGATGCCAATGCCAT
1 CGATGCCAATGCCAT
81272058 GTCTCAGGCA
Statistics
Matches: 118, Mismatches: 17, Indels: 27
0.73 0.10 0.17
Matches are distributed among these distances:
42 37 0.31
43 29 0.25
44 2 0.02
45 2 0.02
46 2 0.02
47 1 0.01
48 45 0.38
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCAATGCCATATCCCAGATATGGTCTTACATGAGATCACATAT
Found at i:81272079 original size:48 final size:47
Alignment explanation
Indices: 81271862--81272087 Score: 170
Period size: 48 Copynumber: 4.9 Consensus size: 47
81271852 ATACATATTA
* *
81271862 CGATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCACATA-
1 CGATGCCAATGCCATGTCC-AGACATGGTCTTACATGGGATCACATAT
* * * * *
81271909 CTGATGCCGAT---A-GCCCAG-CTATTGTCTTACATGATG-TCTCATAT
1 C-GATGCCAATGCCATGTCCAGAC-ATGGTCTTACATG-GGATCACATAT
* **
81271953 CGATGCC-ATG---T-CCCAGACATGGTCTTACATGAAATCACATAT
1 CGATGCCAATGCCATGTCCAGACATGGTCTTACATGGGATCACATAT
* * *
81271995 CGATGCCAATGCCATATCCTAGATATGGTCTTACATGGGATCGCATAT
1 CGATGCCAATGCCATGTCC-AGACATGGTCTTACATGGGATCACATAT
* * *
81272043 CGATGCCAATGCCATGTCTCAGGCATGTTCTCACATGGGATCACA
1 CGATGCCAATGCCATGTC-CAGACATGGTCTTACATGGGATCACA
81272088 CATAACCCTA
Statistics
Matches: 142, Mismatches: 22, Indels: 29
0.74 0.11 0.15
Matches are distributed among these distances:
42 33 0.23
43 30 0.21
44 4 0.03
45 1 0.01
46 1 0.01
47 3 0.02
48 69 0.49
49 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (47 bp):
CGATGCCAATGCCATGTCCAGACATGGTCTTACATGGGATCACATAT
Found at i:81273256 original size:33 final size:32
Alignment explanation
Indices: 81273219--81273282 Score: 110
Period size: 33 Copynumber: 2.0 Consensus size: 32
81273209 ACCTTTATGC
*
81273219 CTTAAATTGAAAATGATTTTTATATAAGGGGAG
1 CTTAAATTGAAAATGACTTTTAT-TAAGGGGAG
81273252 CTTAAATTGAAAATGACTTTTATTAAGGGGA
1 CTTAAATTGAAAATGACTTTTATTAAGGGGA
81273283 AGCAATCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 8 0.27
33 22 0.73
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.36
Consensus pattern (32 bp):
CTTAAATTGAAAATGACTTTTATTAAGGGGAG
Found at i:81273684 original size:20 final size:20
Alignment explanation
Indices: 81273636--81273684 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
81273626 ATTGATCCAA
* *
81273636 TATCGATATTTTTCTTAAGG
1 TATCGATATATTTCCTAAGG
*
81273656 TATCAATATATTTCCTAAGG
1 TATCGATATATTTCCTAAGG
*
81273676 TATTGATAT
1 TATCGATAT
81273685 TCCTGCTCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (20 bp):
TATCGATATATTTCCTAAGG
Found at i:81274788 original size:23 final size:23
Alignment explanation
Indices: 81274756--81274815 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
81274746 GGTTATGCCT
81274756 CACACGCCCGTGTGGAGACAAAG
1 CACACGCCCGTGTGGAGACAAAG
* *
81274779 CACACACCCGTGTGGAGGCAAAG
1 CACACGCCCGTGTGGAGACAAAG
*
81274802 CACATGCCCGTGTG
1 CACACGCCCGTGTG
81274816 CTTAGGGACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.27, C:0.32, G:0.30, T:0.12
Consensus pattern (23 bp):
CACACGCCCGTGTGGAGACAAAG
Found at i:81281654 original size:15 final size:15
Alignment explanation
Indices: 81281634--81281662 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
81281624 AATTACTCTC
81281634 GGTTTTGTTCTTCTT
1 GGTTTTGTTCTTCTT
81281649 GGTTTTGTTCTTCT
1 GGTTTTGTTCTTCT
81281663 CGCAGTGTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.14, G:0.21, T:0.66
Consensus pattern (15 bp):
GGTTTTGTTCTTCTT
Found at i:81281747 original size:22 final size:20
Alignment explanation
Indices: 81281705--81281755 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
81281695 GTGTAATTCT
* *
81281705 ATCAAAAATAACCAAATTTA
1 ATCAAAATTAACCAAAATTA
81281725 ATCAAAATTAACTACAAAATTA
1 ATCAAAATTAAC--CAAAATTA
*
81281747 ATTAAAATT
1 ATCAAAATT
81281756 CATAATGTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.42
22 15 0.58
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (20 bp):
ATCAAAATTAACCAAAATTA
Found at i:81281811 original size:19 final size:20
Alignment explanation
Indices: 81281767--81281811 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
81281757 ATAATGTTCA
*
81281767 TATTTTTAACATAATTTAAT
1 TATTTTTAACATAATTTAAC
81281787 TA-TTTTATA-AT-ATTTAAC
1 TATTTTTA-ACATAATTTAAC
81281805 TATTTTT
1 TATTTTT
81281812 TTGACAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 8 0.36
19 11 0.50
20 3 0.14
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTTTTAACATAATTTAAC
Found at i:81281861 original size:21 final size:20
Alignment explanation
Indices: 81281819--81281862 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
81281809 TTTTTGACAA
* *
81281819 GAATTTAATCGAATTTGCAT
1 GAATTTAATAGAATTAGCAT
*
81281839 GAATTTAAGTAGAATTAGTAT
1 GAATTTAA-TAGAATTAGCAT
81281860 GAA
1 GAA
81281863 AAAGTATATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (20 bp):
GAATTTAATAGAATTAGCAT
Found at i:81291177 original size:17 final size:17
Alignment explanation
Indices: 81291149--81291189 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
81291139 TCATCAGCAA
81291149 CAAGGATAGGATTTTGAG
1 CAAGG-TAGGATTTTGAG
81291167 CAAGGTAGGATTTTGAG
1 CAAGGTAGGATTTTGAG
81291184 CAAGGT
1 CAAGGT
81291190 TTGCTCTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (17 bp):
CAAGGTAGGATTTTGAG
Found at i:81295020 original size:43 final size:43
Alignment explanation
Indices: 81294959--81295046 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
81294949 ACACTTTTAC
*
81294959 AATTTAGTCCTAAAACTCGTATAATGAAATGCATGAAATTTCT
1 AATTTAGTCCTAAAACTCGTATAAGGAAATGCATGAAATTTCT
*
81295002 AATTTAGTCCTAAGACTCGTATAAGGAAATGCATGAAATTTCT
1 AATTTAGTCCTAAAACTCGTATAAGGAAATGCATGAAATTTCT
81295045 AA
1 AA
81295047 GTTACCCAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (43 bp):
AATTTAGTCCTAAAACTCGTATAAGGAAATGCATGAAATTTCT
Found at i:81297372 original size:44 final size:44
Alignment explanation
Indices: 81297321--81297407 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
81297311 TTCGGTTATG
* *
81297321 TATTGGCACTTGGTGTGTGAAATTGAAATAGCT-TCGGCTATATT
1 TATTGGCACTTAGTGTGCGAAATTGAAATAGCTCT-GGCTATATT
** *
81297365 TATTGGCACTTAGTGTGCGTGATTGAGATAGCTCTGGCTATAT
1 TATTGGCACTTAGTGTGCGAAATTGAAATAGCTCTGGCTATAT
81297408 ATATAGATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
44 36 0.97
45 1 0.03
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38
Consensus pattern (44 bp):
TATTGGCACTTAGTGTGCGAAATTGAAATAGCTCTGGCTATATT
Found at i:81299895 original size:5 final size:5
Alignment explanation
Indices: 81299866--81299920 Score: 67
Period size: 5 Copynumber: 11.0 Consensus size: 5
81299856 TATAAATTTA
* * *
81299866 ATTAT GTTAA ATTAT AATA- ATTAT ATTAT AATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT -ATTAT ATTAT ATTAT ATTAT
81299916 ATTAT
1 ATTAT
81299921 GATATAAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
4 3 0.07
5 34 0.81
6 5 0.12
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATTAT
Found at i:81300032 original size:21 final size:21
Alignment explanation
Indices: 81300006--81300045 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81299996 ATACATATAT
81300006 TTATTATTAAATAGATATTTA
1 TTATTATTAAATAGATATTTA
* *
81300027 TTATTATTTAATTGATATT
1 TTATTATTAAATAGATATT
81300046 AAATTATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
TTATTATTAAATAGATATTTA
Found at i:81301194 original size:11 final size:11
Alignment explanation
Indices: 81301163--81301200 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
81301153 TATTGGTTGA
*
81301163 AATTGAAAGTG
1 AATTGAAATTG
*
81301174 -ATTCAAATTG
1 AATTGAAATTG
81301184 AATTGAAATTG
1 AATTGAAATTG
81301195 AATTGA
1 AATTGA
81301201 GCAATTGAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.45, C:0.03, G:0.18, T:0.34
Consensus pattern (11 bp):
AATTGAAATTG
Found at i:81301306 original size:77 final size:78
Alignment explanation
Indices: 81301233--81301377 Score: 172
Period size: 78 Copynumber: 1.9 Consensus size: 78
81301223 TGAAAGTGAA
* * * *
81301233 AAGTCATTTGAATTAAA-T-AATTGAATTATG-AATTATGTGAATATTTGAAGA-TATATTGATT
1 AAGTCAATTGAATCAAATTGAATTGAATGATGAAAATATGTGAATATTTGAA-ATTATATTGATT
81301294 GGAAATTAAAAGTG
65 GGAAATTAAAAGTG
** * *
81301308 ATTTGAATTGAATCAAATTGAATTGAATGATGAAAATATGTGATTATTTGAAATTTATATTGATT
1 AAGTCAATTGAATCAAATTGAATTGAATGATGAAAATATGTGAATATTTGAAA-TTATATTGATT
81301373 GGAAA
65 GGAAA
81301378 GTGAATAGTG
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
75 12 0.21
76 1 0.02
77 12 0.21
78 17 0.30
79 15 0.26
ACGTcount: A:0.42, C:0.01, G:0.17, T:0.39
Consensus pattern (78 bp):
AAGTCAATTGAATCAAATTGAATTGAATGATGAAAATATGTGAATATTTGAAATTATATTGATTG
GAAATTAAAAGTG
Found at i:81301346 original size:70 final size:71
Alignment explanation
Indices: 81301214--81301346 Score: 164
Period size: 70 Copynumber: 1.9 Consensus size: 71
81301204 ATTGAGATGC
* * **
81301214 ATATTGATTTGAAAGTGAAAAGTCATTTGAATTAAATAATTGAATTATGAATTATGTGAATATTT
1 ATATTGATTGGAAAGTGAAAAGTCATTTGAATTAAATAATTGAATTATGAATGATGAAAATATTT
81301279 GAAGAT
66 GAAGAT
* * *
81301285 ATATTGATTGGAAA-TTAAAAGTGATTTGAATTGAATCAAATTGAA-T-TGAATGATGAAAATAT
1 ATATTGATTGGAAAGTGAAAAGTCATTTGAATTAAAT--AATTGAATTATGAATGATGAAAATAT
81301347 GTGATTATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
70 32 0.60
71 14 0.26
72 7 0.13
ACGTcount: A:0.44, C:0.02, G:0.17, T:0.38
Consensus pattern (71 bp):
ATATTGATTGGAAAGTGAAAAGTCATTTGAATTAAATAATTGAATTATGAATGATGAAAATATTT
GAAGAT
Found at i:81301394 original size:75 final size:71
Alignment explanation
Indices: 81301214--81301395 Score: 177
Period size: 75 Copynumber: 2.5 Consensus size: 71
81301204 ATTGAGATGC
* * * * * * *
81301214 ATATTGATTTGAAAGTGAAAAGTCATTTGAATTAAATAATTGAATTATGAATTATGTGAATATTT
1 ATATTGATTGGAAAGTGAATAGTGAATTGAATCAAATAATTGAATGATGAAATATGTGAATATTT
81301279 GAAGAT
66 GAAGAT
* * *
81301285 ATATTGATTGGAAATTAAAAGTGATTTGAATTGAATCAAATTGAATTGAATGATGAAAATATGTG
1 ATATTGATTGGAAAGT-GAA-T-A-GTGAATTGAATCAAA-T-AATTGAATGATG-AAATATGTG
*
81301350 ATTATTTGAA-ATTT
59 AATATTTGAAGA--T
81301364 ATATTGATTGGAAAGTGAATAGTGAATTGAAT
1 ATATTGATTGGAAAGTGAATAGTGAATTGAAT
81301396 TTGATTGAAA
Statistics
Matches: 88, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
71 14 0.16
72 2 0.02
74 1 0.01
75 21 0.24
76 2 0.02
77 13 0.15
78 19 0.22
79 16 0.18
ACGTcount: A:0.42, C:0.01, G:0.19, T:0.38
Consensus pattern (71 bp):
ATATTGATTGGAAAGTGAATAGTGAATTGAATCAAATAATTGAATGATGAAATATGTGAATATTT
GAAGAT
Found at i:81301423 original size:29 final size:29
Alignment explanation
Indices: 81301367--81301424 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
81301357 GAAATTTATA
* *
81301367 TTGATTGGAAAGTGAATAGTGAATTGAAT
1 TTGATTGGAAAGTGAATAGAGAAGTGAAT
*
81301396 TTGATT-GAAAGTGAATTGAGAAAGTGAAT
1 TTGATTGGAAAGTGAATAGAG-AAGTGAAT
81301425 CGAATACCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.33
Consensus pattern (29 bp):
TTGATTGGAAAGTGAATAGAGAAGTGAAT
Found at i:81301790 original size:18 final size:19
Alignment explanation
Indices: 81301769--81301809 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
81301759 AATGAAATGA
81301769 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
81301787 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
81301806 GAAA
1 GAAA
81301810 GCATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:81303534 original size:21 final size:21
Alignment explanation
Indices: 81303510--81303560 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 21
81303500 TCTAAACAAG
*
81303510 AACCCAAAATCCTAAACTTTT
1 AACCCAAAATCCTAAACTTTA
* *
81303531 AACCCATAACTCTTAAACTTTA
1 AACCCA-AAATCCTAAACTTTA
81303553 AACCCAAA
1 AACCCAAA
81303561 CCTCAAACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 8 0.31
22 18 0.69
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.25
Consensus pattern (21 bp):
AACCCAAAATCCTAAACTTTA
Found at i:81304604 original size:22 final size:21
Alignment explanation
Indices: 81304576--81304630 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
81304566 TTTTAAATTA
* * *
81304576 TTTAAATCGAATTAACTTGAAT
1 TTTAAATCAAATAAAATT-AAT
81304598 TTTAAATTCAAATAAAATTAAT
1 TTTAAA-TCAAATAAAATTAAT
81304620 TTTAAAT-AAAT
1 TTTAAATCAAAT
81304631 CAATTACTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 4 0.14
21 1 0.03
22 15 0.52
23 9 0.31
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (21 bp):
TTTAAATCAAATAAAATTAAT
Found at i:81305172 original size:19 final size:19
Alignment explanation
Indices: 81305150--81305195 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
81305140 CAAAATTAAT
*
81305150 TACGGTGGACAAATTTGAC
1 TACGATGGACAAATTTGAC
81305169 TACGATGGACAAATTTGAC
1 TACGATGGACAAATTTGAC
81305188 TACGATGG
1 TACGATGG
81305196 GTGATTGTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (19 bp):
TACGATGGACAAATTTGAC
Found at i:81305272 original size:11 final size:11
Alignment explanation
Indices: 81305256--81305282 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
81305246 AAATATATTC
81305256 AATTCGATTTG
1 AATTCGATTTG
81305267 AATTCGATTTG
1 AATTCGATTTG
81305278 AATTC
1 AATTC
81305283 CATCTCACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (11 bp):
AATTCGATTTG
Found at i:81305669 original size:14 final size:14
Alignment explanation
Indices: 81305650--81305680 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
81305640 TAAAAAATCT
*
81305650 AATAAATATATAAA
1 AATAAATAAATAAA
81305664 AATAAATAAATAAA
1 AATAAATAAATAAA
81305678 AAT
1 AAT
81305681 TAAGAATTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAAATAAATAAA
Found at i:81306450 original size:15 final size:14
Alignment explanation
Indices: 81306408--81306463 Score: 55
Period size: 14 Copynumber: 4.1 Consensus size: 14
81306398 TCCTAAATTC
81306408 TCAATCCTTA-ATTT
1 TCAAT-CTTATATTT
81306422 TCAATCATTAT-TTT
1 TCAATC-TTATATTT
* *
81306436 CCAATTTTATATTT
1 TCAATCTTATATTT
81306450 TCAATCTTA-ATTT
1 TCAATCTTATATTT
81306463 T
1 T
81306464 TAATTTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
13 10 0.29
14 25 0.71
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (14 bp):
TCAATCTTATATTT
Found at i:81306454 original size:14 final size:14
Alignment explanation
Indices: 81306430--81306480 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
81306420 TTTCAATCAT
81306430 TATTTTCCAATTTTA
1 TATTTT-CAATTTTA
*
81306445 TATTTTCAATCTTA
1 TATTTTCAATTTTA
*
81306459 -ATTTTTAATTTT-
1 TATTTTCAATTTTA
81306471 TAATTTTCAA
1 T-ATTTTCAA
81306481 GCCTCCGTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
13 10 0.33
14 14 0.47
15 6 0.20
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (14 bp):
TATTTTCAATTTTA
Found at i:81306476 original size:27 final size:27
Alignment explanation
Indices: 81306415--81306480 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
81306405 TTCTCAATCC
81306415 TTAATTTTCAATCATTATTTTCCAATT
1 TTAATTTTCAATCATTATTTTCCAATT
*
81306442 TTATATTTTCAATC-TTAATTTT-TAATTT
1 TTA-ATTTTCAATCATT-ATTTTCCAA-TT
81306470 TTAATTTTCAA
1 TTAATTTTCAA
81306481 GCCTCCGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
27 15 0.43
28 20 0.57
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.59
Consensus pattern (27 bp):
TTAATTTTCAATCATTATTTTCCAATT
Found at i:81309182 original size:20 final size:20
Alignment explanation
Indices: 81309157--81309196 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
81309147 TCATCTTAAG
81309157 TTGACTTTGATAAAGTCTAA
1 TTGACTTTGATAAAGTCTAA
*
81309177 TTGACTTTGATGAAGTCTAA
1 TTGACTTTGATAAAGTCTAA
81309197 CTTCTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (20 bp):
TTGACTTTGATAAAGTCTAA
Found at i:81311809 original size:72 final size:72
Alignment explanation
Indices: 81311692--81311835 Score: 198
Period size: 72 Copynumber: 2.0 Consensus size: 72
81311682 TCCATATCCG
* * * * ** *
81311692 GCAAAGTTGAAGAAATATCGCATGGACGAACAATTTGGTAAATTTCTTGAACTTTTTAAACAATT
1 GCAAAGTTGAAGAAAGACCACATGAACGAACAATTTGACAAATTTCTTAAACTTTTTAAACAATT
81311757 AAATATT
66 AAATATT
* *
81311764 GCAAAGTTTAAGAAAGACCACATGAATGAACAATTTGACAAATTTCTTAAACTTTTTAAACAATT
1 GCAAAGTTGAAGAAAGACCACATGAACGAACAATTTGACAAATTTCTTAAACTTTTTAAACAATT
*
81311829 ACATATT
66 AAATATT
81311836 AACTTTCCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.33
Consensus pattern (72 bp):
GCAAAGTTGAAGAAAGACCACATGAACGAACAATTTGACAAATTTCTTAAACTTTTTAAACAATT
AAATATT
Found at i:81312941 original size:30 final size:30
Alignment explanation
Indices: 81312905--81312965 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
81312895 CACGGCTTGG
** *
81312905 CACATGGGCGTGTGGTCTGCCCGTATGGAT
1 CACATGGGCGTGTGCCCAGCCCGTATGGAT
81312935 CACATGGGCGTGTGCCCAGCCCGTATGGAT
1 CACATGGGCGTGTGCCCAGCCCGTATGGAT
81312965 C
1 C
81312966 TTGAAAACTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.15, C:0.28, G:0.34, T:0.23
Consensus pattern (30 bp):
CACATGGGCGTGTGCCCAGCCCGTATGGAT
Found at i:81325241 original size:14 final size:14
Alignment explanation
Indices: 81325220--81325254 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
81325210 AAAAAGGAAG
81325220 ATAA-AAAAAAATA
1 ATAATAAAAAAATA
*
81325233 ATAATAAAATAATA
1 ATAATAAAAAAATA
81325247 ATAATAAA
1 ATAATAAA
81325255 CTCAATGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
ATAATAAAAAAATA
Found at i:81325316 original size:19 final size:17
Alignment explanation
Indices: 81325294--81325345 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 17
81325284 TTGTAATGAC
81325294 AAAAGTAAAAAAAATACGA
1 AAAAG-AAAAAAAATA-GA
81325313 AAAAGAAAAAAAATAGA
1 AAAAGAAAAAAAATAGA
*
81325330 AATAGCAAAATAAAAT
1 AAAAG-AAAA-AAAAT
81325346 TAAAATTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 6 0.20
18 14 0.47
19 10 0.33
ACGTcount: A:0.75, C:0.04, G:0.10, T:0.12
Consensus pattern (17 bp):
AAAAGAAAAAAAATAGA
Found at i:81325366 original size:26 final size:28
Alignment explanation
Indices: 81325337--81325390 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
81325327 AGAAATAGCA
*
81325337 AAATA-AAATTAAAATTAAAAA-ATAAG
1 AAATATAAATAAAAATTAAAAATATAAG
*
81325363 AAATATATATAAAAATTAAAAATATAAG
1 AAATATAAATAAAAATTAAAAATATAAG
81325391 TATAAGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.21
27 14 0.58
28 5 0.21
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (28 bp):
AAATATAAATAAAAATTAAAAATATAAG
Found at i:81325394 original size:21 final size:20
Alignment explanation
Indices: 81325352--81325402 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
81325342 AAATTAAAAT
*
81325352 TAAAAAATAAGAAATATATA
1 TAAAAATTAAGAAATATATA
81325372 TAAAAATTAA-AAATATAAGTA
1 TAAAAATTAAGAAATAT-A-TA
*
81325393 TAAGAATTAA
1 TAAAAATTAA
81325403 TTAATTAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 6 0.22
20 10 0.37
21 11 0.41
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (20 bp):
TAAAAATTAAGAAATATATA
Found at i:81330632 original size:26 final size:26
Alignment explanation
Indices: 81330602--81330709 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
81330592 TGAAATTCCC
81330602 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81330628 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
81330654 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81330680 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81330706 ATCA
1 ATCA
81330710 ATTTGTACCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81337202 original size:204 final size:204
Alignment explanation
Indices: 81336844--81337247 Score: 646
Period size: 204 Copynumber: 2.0 Consensus size: 204
81336834 AACCCGAATG
81336844 TTTTTTATATTACTTTATTTTATTTTCATTTAATTATGTTGCACGCTTATTACATTTATTTTTAT
1 TTTTTTATATTACTTTATTTTATTTTCATTTAATTATGTTGCACGCTTATTACATTTATTTTTAT
**
81336909 CACTTAAAAAAATAGAGACCACATGGTTAAGGGTAAACCACACGACCATGTCATCTACACGGCTT
66 CACTTAAAAAAATAGAGACCACAAAGTTAAGGGTAAACCACACGACCATGTCATCTACACGGCTT
* * *
81336974 GGGCACATGCCCGTGTATACTTGGGCATAAAAAAATTTTTGAAGCCAAAAGGCCGTGTAACCCAC
131 GGGCACACGCCCGTGCACACTTGGGCATAAAAAAATTTTTGAAGCCAAAAGGCCGTGTAACCCAC
81337039 ACACCTCAT
196 ACACCTCAT
*
81337048 TTTTTTATATTATTTTATTTTATTTTCATTTAATTATGTTGCACGCTTATTACATTTATTTTTAT
1 TTTTTTATATTACTTTATTTTATTTTCATTTAATTATGTTGCACGCTTATTACATTTATTTTTAT
** * ** * *
81337113 CACTTGGAAAAATAGAGACCACAAAGTTAGGGGTGGACCATACGACCATGTCATCTACATGGCTT
66 CACTTAAAAAAATAGAGACCACAAAGTTAAGGGTAAACCACACGACCATGTCATCTACACGGCTT
* ** * *
81337178 GGGCACACGCCTGTGCACACTTGGGCATAAAAATTTTTTTGGAGCCAAACGGCCGTGTAACCCAC
131 GGGCACACGCCCGTGCACACTTGGGCATAAAAAAATTTTTGAAGCCAAAAGGCCGTGTAACCCAC
81337243 ACACC
196 ACACC
81337248 CCATGGCACG
Statistics
Matches: 182, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
204 182 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (204 bp):
TTTTTTATATTACTTTATTTTATTTTCATTTAATTATGTTGCACGCTTATTACATTTATTTTTAT
CACTTAAAAAAATAGAGACCACAAAGTTAAGGGTAAACCACACGACCATGTCATCTACACGGCTT
GGGCACACGCCCGTGCACACTTGGGCATAAAAAAATTTTTGAAGCCAAAAGGCCGTGTAACCCAC
ACACCTCAT
Found at i:81339423 original size:19 final size:19
Alignment explanation
Indices: 81339399--81339439 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
81339389 TACCATAGCC
81339399 TAATTCATATAGTTTATAG
1 TAATTCATATAGTTTATAG
81339418 TAATTCATATAGTTTATAG
1 TAATTCATATAGTTTATAG
81339437 TAA
1 TAA
81339440 CAGCTTAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (19 bp):
TAATTCATATAGTTTATAG
Found at i:81341217 original size:6 final size:6
Alignment explanation
Indices: 81341181--81341263 Score: 68
Period size: 6 Copynumber: 14.5 Consensus size: 6
81341171 ACTGAGCTCA
* * * * *
81341181 TTTAGT TTTATAT TTTA-- TTTATT TTTCTT TTTATT TTTAGT TGTACT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
81341228 TTTATT TTTATT TTTA-- TTTGTT TTTA-T TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
81341264 CAAAATTATA
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
4 7 0.11
5 5 0.08
6 44 0.72
7 5 0.08
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:81341253 original size:16 final size:15
Alignment explanation
Indices: 81341232--81341261 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
81341222 TGTACTTTTA
81341232 TTTTTATTTTTATTTG
1 TTTTTA-TTTTATTTG
81341248 TTTTTATTTTATTT
1 TTTTTATTTTATTT
81341262 TTCAAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (15 bp):
TTTTTATTTTATTTG
Found at i:81345703 original size:80 final size:82
Alignment explanation
Indices: 81345589--81345774 Score: 238
Period size: 80 Copynumber: 2.3 Consensus size: 82
81345579 GCTACTCGTT
* * *
81345589 CAAATGCCTTCGGGACATAGCCC-GCTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATGCCTTC-GGATCTTAACCC
* *
81345652 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
81345669 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATGCCTTCGGATCTTAACCCG
* *
81345733 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
81345750 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81345775 CATCATTCAA
Statistics
Matches: 92, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
79 3 0.03
80 78 0.85
81 11 0.12
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCACACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:81345734 original size:40 final size:40
Alignment explanation
Indices: 81345589--81345774 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
81345579 GCTACTCGTT
* * * *
81345589 CAAATGCCTTCGGGACATAGCCC-GCTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACA
*
81345629 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
81345669 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
** * * * *
81345709 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CA
*
81345750 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
81345775 CATCATTCAA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.89
41 12 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
Found at i:81362088 original size:9 final size:9
Alignment explanation
Indices: 81362082--81362132 Score: 56
Period size: 8 Copynumber: 6.0 Consensus size: 9
81362072 TTATTTTTTG
81362082 AATTTTTAT
1 AATTTTTAT
81362091 AATTTTTAT
1 AATTTTTAT
*
81362100 --TTTGTAT
1 AATTTTTAT
81362107 -ATTTTTAT
1 AATTTTTAT
81362115 AA-TTTTAT
1 AATTTTTAT
81362123 AATTATTTAT
1 AATT-TTTAT
81362133 TGACGTAGCA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
7 6 0.17
8 14 0.39
9 11 0.31
10 5 0.14
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
AATTTTTAT
Found at i:81362911 original size:7 final size:7
Alignment explanation
Indices: 81362895--81362926 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
81362885 GAAAATTTGG
81362895 TTTT-AT
1 TTTTAAT
81362901 TTTTAAT
1 TTTTAAT
81362908 TTTTAAT
1 TTTTAAT
81362915 TTTTAAT
1 TTTTAAT
81362922 TTTTA
1 TTTTA
81362927 GTAATGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.16
7 21 0.84
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (7 bp):
TTTTAAT
Found at i:81367248 original size:18 final size:18
Alignment explanation
Indices: 81367225--81367260 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81367215 AACTATTCTC
81367225 ACAACCACCACTTTCGGA
1 ACAACCACCACTTTCGGA
81367243 ACAACCACCACTTTCGGA
1 ACAACCACCACTTTCGGA
81367261 GATAACAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.39, G:0.11, T:0.17
Consensus pattern (18 bp):
ACAACCACCACTTTCGGA
Found at i:81368523 original size:20 final size:19
Alignment explanation
Indices: 81368498--81368543 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
81368488 GGATATATGT
*
81368498 ATTTGTTTTTATATAAATTA
1 ATTTGTTTTTATA-AAATAA
81368518 ATTTG-TTTTATAAAATAA
1 ATTTGTTTTTATAAAATAA
81368536 ATATTGTT
1 AT-TTGTT
81368544 AAAAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.30
19 10 0.43
20 6 0.26
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57
Consensus pattern (19 bp):
ATTTGTTTTTATAAAATAA
Found at i:81373801 original size:14 final size:13
Alignment explanation
Indices: 81373759--81373813 Score: 51
Period size: 13 Copynumber: 4.3 Consensus size: 13
81373749 GTAAAAAAGG
81373759 ATAAAA-AAATAA
1 ATAAAATAAATAA
* *
81373771 AT-GAATGAATAA
1 ATAAAATAAATAA
81373783 ATAAAAGTAAATAA
1 ATAAAA-TAAATAA
* *
81373797 GTAAAATAAATAT
1 ATAAAATAAATAA
81373810 ATAA
1 ATAA
81373814 TATTAAATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
11 2 0.06
12 9 0.27
13 11 0.33
14 11 0.33
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (13 bp):
ATAAAATAAATAA
Found at i:81374811 original size:18 final size:19
Alignment explanation
Indices: 81374788--81374823 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
81374778 TATATGGAAA
81374788 TAAAAAAAACTA-AAATAG
1 TAAAAAAAACTAGAAATAG
*
81374806 TAAAAATAACTAGAAATA
1 TAAAAAAAACTAGAAATA
81374824 AAAAAAATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (19 bp):
TAAAAAAAACTAGAAATAG
Found at i:81374828 original size:18 final size:17
Alignment explanation
Indices: 81374784--81374830 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
81374774 TTCGTATATG
81374784 GAAAT-AAAAAAAACTA
1 GAAATAAAAAAAAACTA
*
81374800 -AAATAGTAAAAATAACTA
1 GAAATA--AAAAAAAACTA
81374818 GAAATAAAAAAAA
1 GAAATAAAAAAAA
81374831 TGAAAATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
15 4 0.16
17 6 0.24
18 10 0.40
19 5 0.20
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.15
Consensus pattern (17 bp):
GAAATAAAAAAAAACTA
Found at i:81374829 original size:19 final size:18
Alignment explanation
Indices: 81374789--81374831 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
81374779 ATATGGAAAT
*
81374789 AAAAAA-AACTAAAATAG
1 AAAAAATAACTAAAATAA
*
81374806 TAAAAATAACTAGAAATAA
1 AAAAAATAACTA-AAATAA
81374825 AAAAAAT
1 AAAAAAT
81374832 GAAAATCACC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 5 0.24
18 5 0.24
19 11 0.52
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (18 bp):
AAAAAATAACTAAAATAA
Found at i:81375030 original size:16 final size:17
Alignment explanation
Indices: 81375006--81375039 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
81374996 TTACTGCTAC
*
81375006 TGTTCTTTTTC-TCTTT
1 TGTTATTTTTCTTCTTT
81375022 TGTTATTTTTCTTCTTT
1 TGTTATTTTTCTTCTTT
81375039 T
1 T
81375040 CTCCTCTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.03, C:0.15, G:0.06, T:0.76
Consensus pattern (17 bp):
TGTTATTTTTCTTCTTT
Done.