Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 240 of 345
Found at i:81376009 original size:140 final size:134
Alignment explanation
Indices: 81375798--81376050 Score: 285
Period size: 140 Copynumber: 1.8 Consensus size: 134
81375788 CCCGTCTTCA
* * * * * * * *
81375798 ATCTGCTTCACTGCAATTTCAAGAAGATAAGGTTTATAGATTTAATCTGCCTAGCTGCCACTTTA
1 ATCTGCTCCACTGCAAATTCAAGAAGATAAGATCTACAGATTCAATCTGCCCAGCTGCCACTTCA
* *
81375863 GAGAGATAAAATCTATGACTTATAGCTTCAATCTGTTCCATTATAACTTCAGGGAAATAAGATTC
66 GAGAGATAAAAT-T-TG-C-TAT--CTTCAATCTGCTCCACTATAACTTCAGGGAAATAAGATTC
81375928 ATTGTTTTTT
125 ATTGTTTTTT
* *
81375938 ATCTGCTCCACTGCAAATTCAAGGAGATAAGATCTACA-ACTTCAATCTGCTCCA-CTGCTACTT
1 ATCTGCTCCACTGCAAATTCAAGAAGATAAGATCTACAGA-TTCAATCTGC-CCAGCTGCCACTT
* * *
81376001 CAGGGAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATAACTTCAGGG
64 CAGAGAGATAAAATTTGCTATCTTCAATCTGCTCCACTATAACTTCAGGG
81376051 GGATAAGGCT
Statistics
Matches: 96, Mismatches: 15, Indels: 10
0.79 0.12 0.08
Matches are distributed among these distances:
134 27 0.28
136 2 0.02
137 1 0.01
138 2 0.02
139 2 0.02
140 60 0.62
141 2 0.02
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.34
Consensus pattern (134 bp):
ATCTGCTCCACTGCAAATTCAAGAAGATAAGATCTACAGATTCAATCTGCCCAGCTGCCACTTCA
GAGAGATAAAATTTGCTATCTTCAATCTGCTCCACTATAACTTCAGGGAAATAAGATTCATTGTT
TTTT
Found at i:81376046 original size:45 final size:45
Alignment explanation
Indices: 81375888--81376105 Score: 156
Period size: 44 Copynumber: 4.9 Consensus size: 45
81375878 TGACTTATAG
* * * * *
81375888 CTTCAATCTGTTCCATTATAACTTCAGGGAAATAAGATTCATTGT
1 CTTCAATCTGCTCCACTATAACTTCAGGGAGATAAGATTTACTGT
* ** ** * * * **
81375933 TTTTTATCTGCTCCACTGCAAATTCAAGGAGATAAGATCTAC-AA
1 CTTCAATCTGCTCCACTATAACTTCAGGGAGATAAGATTTACTGT
* *
81375977 CTTCAATCTGCTCCACTGCT-ACTTCAGGGAGATAAGATTTGCTGT
1 CTTCAATCTGCTCCACT-ATAACTTCAGGGAGATAAGATTTACTGT
* ** *
81376022 CTTCAATCTGCTCCACTATAACTTCAGGGGGATAAG-GCT-CGTGG
1 CTTCAATCTGCTCCACTATAACTTCAGGGAGATAAGATTTAC-TGT
* ** * *
81376066 CTTCAATCTTCTCCACTGCAACTTTAGGGAGATACGATTT
1 CTTCAATCTGCTCCACTATAACTTCAGGGAGATAAGATTT
81376106 TCCATAATTT
Statistics
Matches: 129, Mismatches: 39, Indels: 10
0.72 0.22 0.06
Matches are distributed among these distances:
43 1 0.01
44 66 0.51
45 62 0.48
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTATAACTTCAGGGAGATAAGATTTACTGT
Found at i:81376056 original size:89 final size:88
Alignment explanation
Indices: 81375888--81376105 Score: 195
Period size: 89 Copynumber: 2.5 Consensus size: 88
81375878 TGACTTATAG
* * ** * *** * ** *
81375888 CTTCAATCTGTTCCATTATAACTTCAGGGAAATAAGATTCATTGTTTTTTATCTGCTCCACTGCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTGTCTTCAATCTGCTCCACTACA
*
81375953 AATTCAAGGAGATAAGATCTAC-AA
66 AATTCAAGGAGATAAG-GCT-CGAA
* *
81375977 CTTCAATCTGCTCCACTGCTACTTCAGGGAGATAAGATTTGCTGTCTTCAATCTGCTCCACTATA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTGTCTTCAATCTGCTCCACTACA
* * * **
81376042 ACTTCAGGGGGATAAGGCTCGTGG
66 AATTCAAGGAGATAAGGCTCG-AA
* * *
81376066 CTTCAATCTTCTCCACTGCAACTTTAGGGAGATACGATTT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTT
81376106 TCCATAATTT
Statistics
Matches: 103, Mismatches: 24, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
87 1 0.01
88 2 0.02
89 100 0.97
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.33
Consensus pattern (88 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCTGTCTTCAATCTGCTCCACTACA
AATTCAAGGAGATAAGGCTCGAA
Found at i:81376089 original size:44 final size:45
Alignment explanation
Indices: 81375938--81376099 Score: 159
Period size: 44 Copynumber: 3.6 Consensus size: 45
81375928 ATTGTTTTTT
* * * **
81375938 ATCTGCTCCACTGCAAATTCAAGGAGATAAGA-TCTAC-AACTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTC-GCTGGCTTCA
* * * *
81375982 ATCTGCTCCACTGCTACTTCAGGGAGATAAGATTTGCTGTCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTGGCTTCA
** * *
81376027 ATCTGCTCCACTATAACTTCAGGGGGATAAGGCTCG-TGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTGGCTTCA
* *
81376071 ATCTTCTCCACTGCAACTTTAGGGAGATA
1 ATCTGCTCCACTGCAACTTCAGGGAGATA
81376100 CGATTTTCCA
Statistics
Matches: 96, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
44 61 0.64
45 35 0.36
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (45 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGCTGGCTTCA
Found at i:81376441 original size:255 final size:255
Alignment explanation
Indices: 81375951--81376455 Score: 622
Period size: 255 Copynumber: 2.0 Consensus size: 255
81375941 TGCTCCACTG
*
81375951 CAAATTCAAGGAGATAAGATCTACAACTTCAATCTGCTCCACTGCTACTTCAGGGAGATAAGATT
1 CAAATTCAAGGAGATAAGATCTACAACTTCAATATGCTCCACTGCTACTTCAGGGAGATAAGATT
* * * * * * *
81376016 TGCTGTCTTCAATCTGCTCCACTATAACTTCAGGGGGATAAGGCTCGTGGCTTCAATCTTCTCCA
66 TACTATATTCAATCTACTCCACTACAACTTCAGGGGGATAAAGCTCGTGGCTTCAATCTACTCCA
* * * ** * * * * *
81376081 CTGCAACTTTAGGGAGATACGATTTTCCATAATTTGTAACTTTAATTTGATCCGCTGCAACGTTA
131 CTGCAACTTCAGGAAGATAAGATTCGCCATAATTTGTAACTTTAATCTGATCCACAGCAACATCA
* * *
81376146 GGGAAATAAGATTCGCTATCTTCGATCTGTTCCACTGCAACTTCAAGGAGATAAGATCTA
196 AGGAAATAAGATTCGCTATCTTCGATCTGCTCCACTGCAACTACAAGGAGATAAGATCTA
* *
81376206 CAAATTTAAGGAGATAAGATCTACAACTTCAATATGCTCCACTGCTACTTCAGGGAGATGAGATT
1 CAAATTCAAGGAGATAAGATCTACAACTTCAATATGCTCCACTGCTACTTCAGGGAGATAAGATT
* ** * * *
81376271 TACTATATTCAGTCTACTCTGCTACAACTTTAGGGAGG-TAAAGC-CGCTGGCTTCAGTCTACTT
66 TACTATATTCAATCTACTCCACTACAACTTCAGGG-GGATAAAGCTCG-TGGCTTCAATCTACTC
*
81376334 CACTGCAACTTCAGGAAGATAAGATTCGCCATAATTTGTAGCTTTAATCT-ATTCCACAGCAACA
129 CACTGCAACTTCAGGAAGATAAGATTCGCCATAATTTGTAACTTTAATCTGA-TCCACAGCAACA
* * * * * *
81376398 TCAAGGAAGTATGATTTGCTGTCTTC-AGTCTGCTCCGCTGCAACTACAGGGAGATAAG
193 TCAAGGAAATAAGATTCGCTATCTTCGA-TCTGCTCCACTGCAACTACAAGGAGATAAG
81376456 GCTGGTGGCT
Statistics
Matches: 210, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
254 4 0.02
255 204 0.97
256 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (255 bp):
CAAATTCAAGGAGATAAGATCTACAACTTCAATATGCTCCACTGCTACTTCAGGGAGATAAGATT
TACTATATTCAATCTACTCCACTACAACTTCAGGGGGATAAAGCTCGTGGCTTCAATCTACTCCA
CTGCAACTTCAGGAAGATAAGATTCGCCATAATTTGTAACTTTAATCTGATCCACAGCAACATCA
AGGAAATAAGATTCGCTATCTTCGATCTGCTCCACTGCAACTACAAGGAGATAAGATCTA
Found at i:81383137 original size:37 final size:37
Alignment explanation
Indices: 81383087--81383161 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
81383077 AGTGACTATG
81383087 ACTCGTGTGGACAGTTTGATGTGAGCATTTATTAGTA
1 ACTCGTGTGGACAGTTTGATGTGAGCATTTATTAGTA
81383124 ACTCGTGTGGACAGTTTGATGTGAGCATTTATTAGTA
1 ACTCGTGTGGACAGTTTGATGTGAGCATTTATTAGTA
81383161 A
1 A
81383162 ATTGTGAAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.11, G:0.27, T:0.37
Consensus pattern (37 bp):
ACTCGTGTGGACAGTTTGATGTGAGCATTTATTAGTA
Found at i:81386562 original size:14 final size:13
Alignment explanation
Indices: 81386532--81386575 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
81386522 AAGGATAAAC
*
81386532 AAATAAAT-GAAT
1 AAATAAATAAAAT
81386544 AAATAAATAAAAGT
1 AAATAAATAAAA-T
*
81386558 AAATAAGTAAAAT
1 AAATAAATAAAAT
81386571 AAATA
1 AAATA
81386576 TATATAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 8 0.29
13 8 0.29
14 12 0.43
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:81388887 original size:89 final size:88
Alignment explanation
Indices: 81388730--81388933 Score: 207
Period size: 89 Copynumber: 2.3 Consensus size: 88
81388720 TGACTTATAG
* * * * * ** * *
81388730 CTTCAATCTGTTCCATTGCAAATTCA-GGAAAATAAGATTCACTGTCTTCGATCTGCTCGACTGC
1 CTTCAATCTGCTCCACTGCAACTTCATGG-AGATGAGATTTGCTGTCTTCGATCTGCTCCACTAC
*
81388794 AACTTCAAGGAGATAAGATCTACA-A
65 AACTTCAAGGAGATAAG-GCT-CAGA
* *
81388819 CTTCAATTTGCTCCACTGCTACTTCATGGAGATGAGATTTGCTGTCTTC-AGTCTGCTCCACTAC
1 CTTCAATCTGCTCCACTGCAACTTCATGGAGATGAGATTTGCTGTCTTCGA-TCTGCTCCACTAC
* * *
81388883 AACTTTAGGGAGATAAGGCTCATGG
65 AACTTCAAGGAGATAAGGCTCA-GA
81388908 CTTCAATCTGCTCCACTGCAACTTCA
1 CTTCAATCTGCTCCACTGCAACTTCA
81388934 GGGCGATACG
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
87 2 0.02
88 3 0.03
89 87 0.93
90 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (88 bp):
CTTCAATCTGCTCCACTGCAACTTCATGGAGATGAGATTTGCTGTCTTCGATCTGCTCCACTACA
ACTTCAAGGAGATAAGGCTCAGA
Found at i:81389066 original size:23 final size:23
Alignment explanation
Indices: 81389035--81389079 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
81389025 TAACCCTAAT
*
81389035 GAGATAAGATATACAACTTCAAA
1 GAGAAAAGATATACAACTTCAAA
* *
81389058 GAGAAAAGATCTTCAACTTCAA
1 GAGAAAAGATATACAACTTCAA
81389080 CCTGCTCCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.49, C:0.16, G:0.13, T:0.22
Consensus pattern (23 bp):
GAGAAAAGATATACAACTTCAAA
Found at i:81389244 original size:255 final size:255
Alignment explanation
Indices: 81388793--81389256 Score: 635
Period size: 255 Copynumber: 1.8 Consensus size: 255
81388783 TGCTCGACTG
* * ** ** *
81388793 CAACTTCAAGGAGATAAGATCTACAACTTCAATTTGCTCCACTGCTACTTCATGGAGATGAGATT
1 CAACTTCAAAGAGAAAAGATCTACAACTTCAACCTGCTCCACAACTACTTCATGAAGATGAGATT
* *
81388858 TGCTGTCTTCAGTCTGCTCCACTACAACTTTAGGGAGATAAGGCTCATGGCTTCAATCTGCTCCA
66 TGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTCATGGCTTCAATCTGCTCCA
**** * * *
81388923 CTGCAACTTCAGGGCGATACGATTCGCCATAATTTGTTGCTTTAATCTGTTCCACTATAACGTCA
131 CTGCAACTTCAGAAAAATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCA
81388988 GGGAAATAAAATTTGCTATCTTCGATCTGTTCCACTGTAACCCTAATGAGATAAGATATA
196 GGGAAATAAAATTTGCTATCTTCGATCTGTTCCACTGTAACCCTAATGAGATAAGATATA
*
81389048 CAACTTCAAAGAGAAAAGATCTTCAACTTCAACCTGCTCCACAACTACTTCA-GTAAGATGAGAT
1 CAACTTCAAAGAGAAAAGATCTACAACTTCAACCTGCTCCACAACTACTTCATG-AAGATGAGAT
* * * * * *
81389112 TTGCTATCTTCAGTTTGCTCCGCTGCAACTTCAGGGAGATAAGGC-CGGTGGCTTCAATTTGCTT
65 TTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTC-ATGGCTTCAATCTGCTC
* * * *
81389176 CACTGTAACTTCAGAAAAATAAGATTCGTCATAATTTGTAGCTTTAATTTGTTCCACTGCAACGT
129 CACTGCAACTTCAGAAAAATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGT
* *
81389241 CAGGGAAGTAAGATTT
194 CAGGGAAATAAAATTT
81389257 TCTGTCTACA
Statistics
Matches: 178, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
254 2 0.01
255 176 0.99
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (255 bp):
CAACTTCAAAGAGAAAAGATCTACAACTTCAACCTGCTCCACAACTACTTCATGAAGATGAGATT
TGCTATCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGGCTCATGGCTTCAATCTGCTCCA
CTGCAACTTCAGAAAAATAAGATTCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACGTCA
GGGAAATAAAATTTGCTATCTTCGATCTGTTCCACTGTAACCCTAATGAGATAAGATATA
Found at i:81389370 original size:45 final size:43
Alignment explanation
Indices: 81389306--81389432 Score: 155
Period size: 45 Copynumber: 2.9 Consensus size: 43
81389296 AGGCTGGTGG
*
81389306 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCA
1 CTTCAATCTGCTCCACTGCAACTTCAGG-AGATAAGATCCACCA
* * * *
81389350 TCTTCTATCTACTCCACTGCAACTTCAAGGAGATAAGATCTACGA
1 -CTTCAATCTGCTCCACTGCAACTTC-AGGAGATAAGATCCACCA
* *
81389395 CTTCAATCTGCTCCACTGCTACTTCAAGGAGATGAGAT
1 CTTCAATCTGCTCCACTGCAACTTC-AGGAGATAAGAT
81389433 TTATGGATTC
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
44 34 0.47
45 35 0.49
46 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (43 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGAGATAAGATCCACCA
Found at i:81391908 original size:13 final size:13
Alignment explanation
Indices: 81391890--81391914 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81391880 TTCGTGCAAT
81391890 CAAAATCCAAATC
1 CAAAATCCAAATC
81391903 CAAAATCCAAAT
1 CAAAATCCAAAT
81391915 TACTAGTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16
Consensus pattern (13 bp):
CAAAATCCAAATC
Found at i:81396593 original size:46 final size:45
Alignment explanation
Indices: 81396489--81396663 Score: 156
Period size: 47 Copynumber: 3.8 Consensus size: 45
81396479 CAAGACAAGT
* *
81396489 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTTGAGATGTAA
* * *
81396535 GCCAATGCAAGACATGAT-TGGGACATGCATCGGCTATGAGATG-ATA
1 GCTAGTGTAAGACATG-TCTGGGACATGCATCGGCT-TGAGATGTA-A
* * * *
81396581 GTTAGTGTAAGACCATGTCTGAGACATGGCATCGGCTTGAGATATGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTTGAGATGTAA
* * *
81396628 GCTAATGTGAGACCATGTCTGGGACCTAGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
81396664 ACCTTACCCC
Statistics
Matches: 104, Mismatches: 18, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
45 3 0.03
46 43 0.41
47 49 0.47
48 9 0.09
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTTGAGATGTAA
Found at i:81404240 original size:46 final size:46
Alignment explanation
Indices: 81404083--81404304 Score: 193
Period size: 46 Copynumber: 4.7 Consensus size: 46
81404073 GGGTGATTGT
* * * *
81404083 GAGCTAGTGTAAGACGTGTTTGGGACATGCATCGGCCAC-ATTATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGA
* * * * *
81404129 GAGCCAGTGTAAGATCATGTCTGGGACATGGAATTGGCATCAAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGA
* * *
81404177 -ATGCTAGTATAAGACATGTCTGGGACATGTATCGGCCTCGAGACGTA
1 GA-GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-A
* *
81404224 -AGCTAGTGTAAGACATGTCTAGGACATGCATCGG-CTACGAGATAA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGA
*
81404269 TAGTCT-GTGTAAGACCATGTCTGGGACATGGCATCG
1 GAG-CTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
81404305 ACACCTTACC
Statistics
Matches: 145, Mismatches: 21, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
45 3 0.02
46 70 0.48
47 44 0.30
48 27 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
Found at i:81406522 original size:14 final size:13
Alignment explanation
Indices: 81406492--81406535 Score: 54
Period size: 14 Copynumber: 3.4 Consensus size: 13
81406482 AAGGATAAAC
*
81406492 AAATAAAT-GAAT
1 AAATAAATAAAAT
81406504 AAATAAATAAAAGT
1 AAATAAATAAAA-T
*
81406518 AAATAAGTAAAAT
1 AAATAAATAAAAT
81406531 AAATA
1 AAATA
81406536 TATATAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 8 0.29
13 8 0.29
14 12 0.43
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:81406800 original size:21 final size:22
Alignment explanation
Indices: 81406767--81406809 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
81406757 AACAAATATA
81406767 AAAGGATGAAATT-AATTGAAT
1 AAAGGATGAAATTAAATTGAAT
81406788 AAAGGACTG-AATTGAAATTGAA
1 AAAGGA-TGAAATT-AAATTGAA
81406810 ACGGAATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 10 0.53
22 2 0.11
23 7 0.37
ACGTcount: A:0.51, C:0.02, G:0.21, T:0.26
Consensus pattern (22 bp):
AAAGGATGAAATTAAATTGAAT
Found at i:81406972 original size:19 final size:19
Alignment explanation
Indices: 81406948--81406985 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
81406938 CTCAGAGGAC
81406948 TAAAATGAATTAAAAACAA
1 TAAAATGAATTAAAAACAA
81406967 TAAAATGAATTAAAAACAA
1 TAAAATGAATTAAAAACAA
81406986 AATTATATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21
Consensus pattern (19 bp):
TAAAATGAATTAAAAACAA
Found at i:81407655 original size:50 final size:50
Alignment explanation
Indices: 81407580--81407679 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
81407570 AAACGAAAAT
*
81407580 CACCTTTAGGATATTTTATATATTAGATCTTTTTTTTGTTTCGTATTCAA
1 CACCTTTAGGATATTTTATATATTAGATCTCTTTTTTGTTTCGTATTCAA
*
81407630 CACCTTTAGGATATTTTATATATTAGATCTCTTTTTTGTTTTGTATTCAA
1 CACCTTTAGGATATTTTATATATTAGATCTCTTTTTTGTTTCGTATTCAA
81407680 TCTTGTTTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.24, C:0.12, G:0.10, T:0.54
Consensus pattern (50 bp):
CACCTTTAGGATATTTTATATATTAGATCTCTTTTTTGTTTCGTATTCAA
Found at i:81408593 original size:46 final size:45
Alignment explanation
Indices: 81408517--81408964 Score: 160
Period size: 44 Copynumber: 9.9 Consensus size: 45
81408507 CTGCAGCTTG
* * * * *
81408517 ATCTATTCCACTGCAACTTCAGGGAAATAAGATTCGTCCGTCTTCA
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTC-ACCATCTTCA
* * *
81408563 ATCTGCTCCACTGCAATTTTAGGGAGATAAGATTCACTATCTTCA
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTCACCATCTTCA
* * *
81408608 GTCTACTCCATTGCAACTTTAGGGAGATAAGACTTGTA--A-CTTCA
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGA-TT-CACCATCTTCA
* * * * *** * * * * *
81408652 ACCAATTCCATTGCAA-TTTCAAAAAGATAAGGTTTA-TAGCTTTA
1 ATCTACTCCACTGCAACTTT-AGGGAGATAAGATTCACCATCTTCA
* * * * *
81408696 ATTTAC-CCTACTGCAACTTCAGAGAGATAAGATCTGTGACTTATAGCTTCA
1 ATCTACTCC-ACTGCAACTTTAGGGAGATAAGA--T-TCAC-CAT--CTTCA
* * * ** *
81408747 ATCT-GTCCCACTGCAACTTTAGGGACATAAGATTCGCTGTCTTCG
1 ATCTACT-CCACTGCAACTTTAGGGAGATAAGATTCACCATCTTCA
* * * * * * *
81408792 ATTTATTCCACTTCAACCTCAAGGAGATAAGA-TCTA-CAACTTCA
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTC-ACCATCTTCA
** * ** **
81408836 ATCTACTCCACTGTTACTTTAGGGAGATGAGATTTTCTTTCTTCA
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTCACCATCTTCA
* * * ** ****
81408881 GTCTGCTCCTCTGCAACTTTAGGGAGATAAGGCTC-GTGGCTTCA
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTCACCATCTTCA
** * *
81408925 ATCTGTTCCACTGCAACTTCAGGGAGATAAGATTCGCCAT
1 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTCACCAT
81408965 AATTTGTAGC
Statistics
Matches: 290, Mismatches: 91, Indels: 43
0.68 0.21 0.10
Matches are distributed among these distances:
42 2 0.01
43 8 0.03
44 110 0.38
45 97 0.33
46 34 0.12
47 5 0.02
48 2 0.01
49 3 0.01
51 27 0.09
52 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (45 bp):
ATCTACTCCACTGCAACTTTAGGGAGATAAGATTCACCATCTTCA
Found at i:81409053 original size:231 final size:232
Alignment explanation
Indices: 81408736--81409244 Score: 700
Period size: 231 Copynumber: 2.2 Consensus size: 232
81408726 GATCTGTGAC
* * * * * * * *
81408736 TTATAGCTTCAATCTGTCCCACTGCAACTTTAGGGACATAAGATTCGCTGTCTTCGATTTATTCC
1 TTATAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTTGCTATCTTCGATCTATTCC
* *
81408801 ACTTCAACCTCAAGGAGATAAGATCTACAACTTCAATCTACTCCACTGTTACTTTAGGGAGATGA
66 ACTGCAACCTCAAGGAGATAAGATCTACAACTTCAATCTACTCCACTGTTACTTTAGGGAGATAA
* * **
81408866 GATTT-TCTTTCTTCAGTCTGCTCCTCTGCAACTTTAGGGAGATAAGGCTCGTGGCTTCAATCTG
131 GATTTGT-TGTCTTCAGTCTGCTCCGCTGCAACTCCAGGGAGATAAGGCTCGTGGCTTCAATCTG
* *
81408930 -TTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAAT
195 CTT-CACTACAACTTCAGGAAGATAAGATTCGCCATAAT
* * *
81408968 TTGTAGCTTTAATCTGTTCCACTGCAACGTCA-GGAAATAAGATTTGTTATCTTCGATCTGTTCC
1 TTATAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTTGCTATCTTCGATCTATTCC
* * * * *
81409032 ACTGCAACTTGAAGGAGATAAGATCTACAACTTCAATCTGCTTCATTGTTACTTTAGGGAGATAA
66 ACTGCAACCTCAAGGAGATAAGATCTACAACTTCAATCTACTCCACTGTTACTTTAGGGAGATAA
* *
81409097 GATTTGTTGTCTTCAGTCTGCTCCGCTGTAACTCCAGGGAGATAAGGCTGGTGGCTTCAATCTGC
131 GATTTGTTGTCTTCAGTCTGCTCCGCTGCAACTCCAGGGAGATAAGGCTCGTGGCTTCAATCTGC
* *
81409162 TTCACTATAACTTCAGGAAGATAAGATTCTCCATAAT
196 TTCACTACAACTTCAGGAAGATAAGATTCGCCATAAT
* * *
81409199 TTATAGCTTTAATTTGTTCCACTGCAATGTCAGGGAAGTAAGATTT
1 TTATAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTT
81409245 TCTGTCTTTA
Statistics
Matches: 242, Mismatches: 32, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
231 200 0.83
232 42 0.17
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (232 bp):
TTATAGCTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTTGCTATCTTCGATCTATTCC
ACTGCAACCTCAAGGAGATAAGATCTACAACTTCAATCTACTCCACTGTTACTTTAGGGAGATAA
GATTTGTTGTCTTCAGTCTGCTCCGCTGCAACTCCAGGGAGATAAGGCTCGTGGCTTCAATCTGC
TTCACTACAACTTCAGGAAGATAAGATTCGCCATAAT
Found at i:81409071 original size:44 final size:44
Alignment explanation
Indices: 81408978--81409071 Score: 100
Period size: 44 Copynumber: 2.1 Consensus size: 44
81408968 TTGTAGCTTT
* * ** *
81408978 AATCTGTTCCACTGCAACGTCAGGAAATAAGATTTGTTATCTTC
1 AATCTGTTCCACTGCAACGTAAGGAAATAAGATCTGACAACTTC
* * *
81409022 GATCTGTTCCACTGCAACTTGAAGGAGATAAGATCT-ACAACTTC
1 AATCTGTTCCACTGCAACGT-AAGGAAATAAGATCTGACAACTTC
81409066 AATCTG
1 AATCTG
81409072 CTTCATTGTT
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
44 28 0.70
45 12 0.30
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (44 bp):
AATCTGTTCCACTGCAACGTAAGGAAATAAGATCTGACAACTTC
Found at i:81409173 original size:44 final size:45
Alignment explanation
Indices: 81409062--81409187 Score: 128
Period size: 44 Copynumber: 2.8 Consensus size: 45
81409052 AGATCTACAA
* * * ** * *
81409062 CTTCAATCTGCTTCATTGTTACTTTAGGGAGATAAGATTTGTTGT
1 CTTCAATCTGCTTCACTGTAACTTCAGGGAGATAAGAGCTGGTGG
* * * *
81409107 CTTCAGTCTGCTCCGCTGTAACTCCAGGGAGATAAG-GCTGGTGG
1 CTTCAATCTGCTTCACTGTAACTTCAGGGAGATAAGAGCTGGTGG
* *
81409151 CTTCAATCTGCTTCACTATAACTTCAGGAAGATAAGA
1 CTTCAATCTGCTTCACTGTAACTTCAGGGAGATAAGA
81409188 TTCTCCATAA
Statistics
Matches: 63, Mismatches: 17, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
44 34 0.54
45 29 0.46
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (45 bp):
CTTCAATCTGCTTCACTGTAACTTCAGGGAGATAAGAGCTGGTGG
Found at i:81423481 original size:81 final size:81
Alignment explanation
Indices: 81423321--81423528 Score: 229
Period size: 81 Copynumber: 2.6 Consensus size: 81
81423311 GCGTTTTACA
**** **
81423321 AAAAACACCGCTAAAAACAGAGCAATAGCGGCGTTTTACAAAAAATGCCGCTAAAAACAGAGCAA
1 AAAAACACCGCTAAAAACAGAGCAATAGCGGCGTTTTTGGTAAAACACCGCTAAAAACAGAGCAA
** * *
81423386 TAGCGGTGTTTTTTGT
66 TAGCGACGTCTTTTGG
* *
81423402 TAAAACACCGCTAAAAACAGAGCAATAGTGGCGTTTTTGGTAAAACACCGCTAAAAACCAGAGCA
1 AAAAACACCGCTAAAAACAGAGCAATAGCGGCGTTTTTGGTAAAACACCGCTAAAAA-CAGAGCA
*
81423467 TTAGCGACG-CTTTTGG
65 ATAGCGACGTCTTTTGG
*** * *
81423483 AAAAATGTCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAA
1 AAAAACACCGCTAAAAA-CAGAGCAATAGCGGCGTTTTTGGTAAAA
81423529 GAATTATGGA
Statistics
Matches: 105, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
81 67 0.64
82 38 0.36
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (81 bp):
AAAAACACCGCTAAAAACAGAGCAATAGCGGCGTTTTTGGTAAAACACCGCTAAAAACAGAGCAA
TAGCGACGTCTTTTGG
Found at i:81423522 original size:41 final size:40
Alignment explanation
Indices: 81423291--81423528 Score: 221
Period size: 41 Copynumber: 5.8 Consensus size: 40
81423281 GCAAAAATTA
* ***
81423291 TAAAACACGGAGCAATAGCGGCG-TTTTACAAAAAACACCGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTT-GGTAAAACACCGC
** *
81423332 TAAAAACAGAGCAATAGCGGCG-TTTT-ACAAAAAATGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACA--CCGC
* * *
81423372 TAAAAACAGAGCAATAGCGGTGTTTTTTGTTAAAACACCGC
1 TAAAAACAGAGCAATAGCGGCG-CTTTTGGTAAAACACCGC
* *
81423413 TAAAAACAGAGCAATAGTGGCGTTTTTGGTAAAACACCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACACCGC
* * * ***
81423453 TAAAAACCAGAGCATTAGCGACGCTTTTGGAAAAATGTCGC
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGGTAAAACACCGC
*
81423494 TAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAA
1 TAAAAA-CAGAGCAATAGCGGCGCTTTTGGTAAAA
81423529 GAATTATGGA
Statistics
Matches: 171, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
38 6 0.04
40 68 0.40
41 88 0.51
42 4 0.02
43 5 0.03
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACACCGC
Found at i:81427516 original size:14 final size:15
Alignment explanation
Indices: 81427480--81427516 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
81427470 CAAACATTTG
81427480 TCAACATTAATTATT
1 TCAACATTAATTATT
*
81427495 T-AATATTAATTATT
1 TCAACATTAATTATT
81427509 TCAA-ATTA
1 TCAACATTA
81427517 CATTTTATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 17 0.85
15 3 0.15
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (15 bp):
TCAACATTAATTATT
Found at i:81427597 original size:61 final size:61
Alignment explanation
Indices: 81427531--81427718 Score: 181
Period size: 61 Copynumber: 3.1 Consensus size: 61
81427521 TTATAGTATC
81427531 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
* * * * * * ** * *
81427592 ATATATTTTAATTATAATATATTTA-ATAATAATTATGTTAA--ATT-A-TCTTTTA-TAGTATC
1 ATATATTATGATTTTAATAAATTCATATAAGAA-TA--TTAATTATTAAGAATTTTATTA-AATT
* * *
81427651 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
81427712 ATATATT
1 ATATATT
81427719 TTAATTATAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
57 3 0.03
58 2 0.02
59 30 0.32
60 14 0.15
61 39 0.41
62 2 0.02
63 4 0.04
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
Found at i:81427613 original size:16 final size:16
Alignment explanation
Indices: 81427592--81427637 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
81427582 TTATTAAATT
81427592 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
81427608 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
81427623 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
81427638 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:81427704 original size:120 final size:120
Alignment explanation
Indices: 81427487--81427755 Score: 454
Period size: 120 Copynumber: 2.2 Consensus size: 120
81427477 TTGTCAACAT
* *
81427487 TAAT-TATTTAATATTAATTAT-TTCAAATTACATTTTATAGTATCATATATTATGATTTTAATA
1 TAATATATTTAATAATAATTATGTT-AAATTACATTTTATAGTATCATATATTATGATTTGAATA
81427550 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
65 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
*
81427606 TAATATATTTAATAATAATTATGTTAAATTATC-TTTTATAGTATCATATATTATGATTTGAGTA
1 TAATATATTTAATAATAATTATGTTAAATTA-CATTTTATAGTATCATATATTATGATTTGAATA
*
81427670 AATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATATTTTAATTA
65 AATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
81427726 TAATATATTTAATAATAATTATGTTTAAAT
1 TAATATATTTAATAATAATTATG-TTAAAT
81427756 ATGATTAAAT
Statistics
Matches: 142, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
119 4 0.03
120 129 0.91
121 9 0.06
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.50
Consensus pattern (120 bp):
TAATATATTTAATAATAATTATGTTAAATTACATTTTATAGTATCATATATTATGATTTGAATAA
ATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
Found at i:81427715 original size:59 final size:58
Alignment explanation
Indices: 81427532--81427715 Score: 139
Period size: 57 Copynumber: 3.1 Consensus size: 58
81427522 TATAGTATCA
*
81427532 TATATTATGATTTTAATAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TATATTATGATTTAAATAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
* * * * *
81427591 TATA-TAT--TTTAATTATAATAT-ATTTAATAATAATTA-TGTTAA-ATTATCTTT-TATAGTA
1 TATATTATGATTTAAATA-AAT-TCATATAAGAAT-ATTATTATTAAGA--AT-TTTAT-TA-AA
81427649 T
58 T
* *
81427650 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAATAAATTCATATAAGAATATT-ATTATTAAGAATTTTATTAAAT
81427711 TATAT
1 TATAT
81427716 ATTTTAATTA
Statistics
Matches: 95, Mismatches: 12, Indels: 36
0.66 0.08 0.25
Matches are distributed among these distances:
55 1 0.01
56 11 0.12
57 15 0.16
58 12 0.13
59 11 0.12
61 6 0.06
62 12 0.13
63 15 0.16
64 11 0.12
65 1 0.01
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (58 bp):
TATATTATGATTTAAATAAATTCATATAAGAATATTATTATTAAGAATTTTATTAAAT
Found at i:81427733 original size:16 final size:16
Alignment explanation
Indices: 81427712--81427753 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
81427702 TTATTAAATT
*
81427712 ATATATTTTAATTATA
1 ATATATTTTAATAATA
81427728 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
81427743 AT-TATGTTTAA
1 ATATAT-TTTAA
81427754 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:81427738 original size:15 final size:15
Alignment explanation
Indices: 81427703--81427744 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
81427693 TTAAGAATTT
*
81427703 TATTAAATTAT-ATA
1 TATTTAATTATAATA
81427717 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
81427731 TATTTAATAATAAT
1 TATTTAATTATAAT
81427745 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:81427979 original size:45 final size:43
Alignment explanation
Indices: 81427879--81427988 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
81427869 TTTTCCATTA
81427879 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
81427918 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
81427963 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
81427989 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:81427990 original size:16 final size:16
Alignment explanation
Indices: 81427969--81428036 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
81427959 GATTTGCTAT
*
81427969 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
81427985 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
81428001 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
81428017 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
81428033 TACA
1 TACA
81428037 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:81432592 original size:43 final size:42
Alignment explanation
Indices: 81432482--81432627 Score: 186
Period size: 43 Copynumber: 3.4 Consensus size: 42
81432472 ATATATATGG
* * *
81432482 TCTTTAGTGGCATTTTTGGGGAAAGCGTCGCTAAAGATCATG-
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAG-TCATGA
* * *
81432524 TCTTTTGTGGCGTTTTTGGGAAAAGCGCCGCTAAATGTCATGA
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAA-GTCATGA
* *
81432567 CCTTTAGCGGTGTTTTTGGGGAAAGCGCCGCTAAAGGTCATGA
1 TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAA-GTCATGA
81432610 TCTTTAGCGGCGTTTTTG
1 TCTTTAGCGGCGTTTTTG
81432628 AGAAAAAAAG
Statistics
Matches: 90, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
42 36 0.40
43 54 0.60
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.34
Consensus pattern (42 bp):
TCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGTCATGA
Found at i:81434113 original size:20 final size:20
Alignment explanation
Indices: 81434088--81434126 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81434078 TGTATTAATA
* *
81434088 AAATTTTAGAATTTTTCATC
1 AAATTTTACAACTTTTCATC
81434108 AAATTTTACAACTTTTCAT
1 AAATTTTACAACTTTTCAT
81434127 TTTAGTCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (20 bp):
AAATTTTACAACTTTTCATC
Found at i:81434828 original size:42 final size:43
Alignment explanation
Indices: 81434778--81434874 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 43
81434768 TTATGAAAAT
* *
81434778 AACGCCGCTATAGAACATGATCTTTAGCAACGTTTTTCCCA-A
1 AACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTTCCCACA
* **
81434820 AATGCCGCTAAAGAACATGATCTTTAGCAGTGCTTTTCCCACA
1 AACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTTCCCACA
81434863 AACGCCGCTAAA
1 AACGCCGCTAAA
81434875 ACGCCGCTAA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 36 0.75
43 12 0.25
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (43 bp):
AACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTTCCCACA
Found at i:81434909 original size:54 final size:54
Alignment explanation
Indices: 81434818--81434922 Score: 142
Period size: 54 Copynumber: 1.9 Consensus size: 54
81434808 CGTTTTTCCC
* *
81434818 AAAATGCCGCTAAAGAACATGATCTTTAGCAGTGCTTTTCCCACAAACGCCGCT
1 AAAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTTTCCCACAAACGCCGCT
**
81434872 AAAACGCCGCTAAAGAACATGA-CTTTTAGC-GACGCTTTTCCTGCAAACGCC
1 AAAACGCCGCTAAAGAACATGATC-TTTAGCAG-CGCTTTTCCCACAAACGCC
81434923 ACTATAGAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
53 2 0.04
54 43 0.96
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (54 bp):
AAAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTTTCCCACAAACGCCGCT
Found at i:81434942 original size:96 final size:96
Alignment explanation
Indices: 81434778--81434964 Score: 227
Period size: 96 Copynumber: 1.9 Consensus size: 96
81434768 TTATGAAAAT
* * * * *
81434778 AACGCCGCTATAGAACATGATCTTTAGCAACGTTTTTCCCAAAATGCCGCTAAAGAACATGATCT
1 AACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTTCCCAAAACGCCACTAAAGAACATGACCT
*
81434843 TTAGCAGTGCTTTTCCCACAAACGCCGCTAA
66 TTAGCAGCGCTTTTCCCACAAACGCCGCTAA
* * *
81434874 AACGCCGCTAAAGAACATGA-CTTTTAGCGACGCTTTTCCTGC-AAACGCCACTATAGAATA-GA
1 AACGCCGCTAAAGAACATGATC-TTTAGCAACGCTTTTCC--CAAAACGCCACTAAAGAACATGA
* *
81434936 CCTTTAGCGGCGCTTTTGCCACAAACGCC
63 CCTTTAGCAGCGCTTTTCCCACAAACGCC
81434965 ACTATAAAAT
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
95 1 0.01
96 61 0.79
97 14 0.18
98 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (96 bp):
AACGCCGCTAAAGAACATGATCTTTAGCAACGCTTTTCCCAAAACGCCACTAAAGAACATGACCT
TTAGCAGCGCTTTTCCCACAAACGCCGCTAA
Found at i:81434944 original size:42 final size:43
Alignment explanation
Indices: 81434873--81435023 Score: 152
Period size: 42 Copynumber: 3.6 Consensus size: 43
81434863 AACGCCGCTA
* * * *
81434873 AAACGCCGCTAAAGAACATGACTTTTAGCGACGCTTTTCCTGC
1 AAACGCCACTAAAGAATATGACCTTTAGCGACGCTTTTCCTAC
* *
81434916 AAACGCCACTATAGAATA-GACCTTTAGCGGCGCTTTTGCC-AC
1 AAACGCCACTAAAGAATATGACCTTTAGCGACGCTTTT-CCTAC
*
81434958 AAACGCCACTATAA-AATA-GACCTTT-G-GTAGCGCTTTTCTTAC
1 AAACGCCACTA-AAGAATATGACCTTTAGCG-A-CGCTTTTCCTAC
*
81435000 AAACGCCGCTAAAGAATATGACCT
1 AAACGCCACTAAAGAATATGACCT
81435024 GTAAAAAAAT
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
40 1 0.01
41 4 0.04
42 63 0.69
43 23 0.25
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
AAACGCCACTAAAGAATATGACCTTTAGCGACGCTTTTCCTAC
Found at i:81435058 original size:21 final size:21
Alignment explanation
Indices: 81435034--81435090 Score: 53
Period size: 22 Copynumber: 2.6 Consensus size: 21
81435024 GTAAAAAAAT
81435034 TATTTTATTTTAATTAAATAA
1 TATTTTATTTTAATTAAATAA
* *
81435055 TA-TTTATTTCTATGTTAAATAT
1 TATTTTATTT-TA-ATTAAATAA
*
81435077 TATATTATCTTTAA
1 TATTTTAT-TTTAA
81435091 ACTATATACT
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
20 7 0.25
21 4 0.14
22 9 0.32
23 6 0.21
24 2 0.07
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (21 bp):
TATTTTATTTTAATTAAATAA
Found at i:81439785 original size:93 final size:93
Alignment explanation
Indices: 81439673--81439844 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
81439663 CGCCCATAAG
* *
81439673 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
81439738 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
81439766 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
81439831 ACGAGTTCGGATGC
66 ACGAGCTCGGATGC
81439845 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:81439841 original size:46 final size:46
Alignment explanation
Indices: 81439666--81439841 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
81439656 TGTAACCCGC
* *
81439666 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
81439712 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* *
81439762 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
81439805 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
81439842 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:81447400 original size:92 final size:92
Alignment explanation
Indices: 81447243--81447413 Score: 288
Period size: 92 Copynumber: 1.9 Consensus size: 92
81447233 CGCCCATAAG
* * * *
81447243 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGGGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAGGAACTCGGACTCAACTCA
81447308 ACGAGTTCGGATGCCTAGTTACATTCA
66 ACGAGTTCGGATGCCTAGTTACATTCA
* *
81447335 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAGGAACTCGGACTCAACTCA
81447400 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
81447414 TCAACCATCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAAGGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATTCA
Found at i:81447410 original size:46 final size:46
Alignment explanation
Indices: 81447236--81447410 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
81447226 TGTAACCCGC
* * * * *
81447236 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
** *
81447282 CCATAAGGGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* **
81447328 ACATTCACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
81447374 CCATAAATGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAACGAACTCGGACTCAACTCAACGAGTTCGGA
81447411 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 99 0.92
48 4 0.04
49 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAACGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:81449610 original size:22 final size:22
Alignment explanation
Indices: 81449584--81449643 Score: 70
Period size: 21 Copynumber: 2.7 Consensus size: 22
81449574 TTAAATATTA
81449584 AAATTTTAAGTTTTTAATTTTTT
1 AAATTTTAAGTTTTTAA-TTTTT
*
81449607 AATTTTTTAA--TTTTAATTTTT
1 AA-ATTTTAAGTTTTTAATTTTT
81449628 AAATTTTAAAGTTTTT
1 AAATTTT-AAGTTTTT
81449644 TGAAGATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
20 4 0.13
21 9 0.29
22 6 0.19
23 6 0.19
24 6 0.19
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (22 bp):
AAATTTTAAGTTTTTAATTTTT
Found at i:81449642 original size:8 final size:8
Alignment explanation
Indices: 81449581--81449668 Score: 67
Period size: 8 Copynumber: 10.9 Consensus size: 8
81449571 ATATTAAATA
*
81449581 TTAAAATT
1 TTAAATTT
*
81449589 TTAAGTTT
1 TTAAATTT
81449597 TT-AATTT
1 TTAAATTT
*
81449604 TTTAATTT
1 TTAAATTT
*
81449612 TTTAA-TT
1 TTAAATTT
81449619 TT-AATTT
1 TTAAATTT
81449626 TTAAA-TT
1 TTAAATTT
81449633 TTAAAGTTTT
1 TTAAA--TTT
81449643 TTGAAGATTT
1 TT-AA-ATTT
81449653 TTATAATTT
1 TTA-AATTT
81449662 TTAAATT
1 TTAAATT
81449669 AACATATAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 18
0.76 0.03 0.20
Matches are distributed among these distances:
6 2 0.03
7 21 0.31
8 24 0.35
9 8 0.12
10 10 0.15
11 2 0.03
12 1 0.01
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (8 bp):
TTAAATTT
Found at i:81450445 original size:50 final size:50
Alignment explanation
Indices: 81450369--81450470 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
81450359 AAGGGACAAG
81450369 TAATTAAAAAAGAATCTTATTACTTACCTAAACCCTAAAACAAATTAGTT
1 TAATTAAAAAAGAATCTTATTACTTACCTAAACCCTAAAACAAATTAGTT
* *
81450419 TAATTAAAAAAGAATCTTATTGCTTACCTAAACTCTAAAACAAATTAGTT
1 TAATTAAAAAAGAATCTTATTACTTACCTAAACCCTAAAACAAATTAGTT
81450469 TA
1 TA
81450471 TTGTCATTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.47, C:0.15, G:0.05, T:0.33
Consensus pattern (50 bp):
TAATTAAAAAAGAATCTTATTACTTACCTAAACCCTAAAACAAATTAGTT
Found at i:81451001 original size:40 final size:39
Alignment explanation
Indices: 81450938--81451065 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
81450928 ACTTTTTGTG
* * * * *
81450938 GCGTTTTTCAGAAAGAGCTGCTAATGGTCAACCTATAGC
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGC
* * *
81450977 AGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGTG
1 -GCGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAG-C
* *
81451018 GCGTTTTTCAAAAAGCGCCGCCAATGCTCTATCTATAGC
1 GCGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGC
81451057 GCTGTTTTT
1 GC-GTTTTT
81451066 TTATCCAAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.03
40 72 0.97
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (39 bp):
GCGTTTTTCAAAAAGCGCCGCTAATGCTCAATCTATAGC
Found at i:81451026 original size:154 final size:152
Alignment explanation
Indices: 81450671--81451044 Score: 489
Period size: 154 Copynumber: 2.4 Consensus size: 152
81450661 ATTTTTTGCG
*
81450671 GCGTTTTTAAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGTGCCGCTAAT
1 GCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGTGCCGCTAAT
* ** * * *
81450736 GCCACTAAAGATCAACATAGAACGTGACATTGTGGTTAATTTTTTACGGTGTTTTTCAGAAAGCA
66 GCCACTAAAGATCAACATAAAACGACACATTGTGCTTAACTTTTTACGGCGTTTTTCAGAAAGCA
* * *
81450801 CCGCGAATGGTCGATCTGTAGC
131 CCGCGAATGGTCAACCTATAGC
* * * * *
81450823 GACATTTTTTAAAAAGCGCAGCTAATGCTCGATCTATAGCGGTGATTTTCAAAAAGTTCCGCTAA
1 G-CGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGTGCCGCTAA
* * **
81450888 TGCCACTAAAGCTCAACATAAAACGACAGCGTTGTGCTTAACTTTTTGTGGCGTTTTTCAGAAAG
65 TGCCACTAAAGATCAACATAAAACGACA-CATTGTGCTTAACTTTTTACGGCGTTTTTCAGAAAG
* *
81450953 -AGCTGCTAATGGTCAACCTATAGC
129 CA-CCGCGAATGGTCAACCTATAGC
* * *
81450977 AGCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGTGGCGTTTTTCAAAAAGCGCCGCCAA
1 -GCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGTGCCGCTAA
81451042 TGC
65 TGC
81451045 TCTATCTATA
Statistics
Matches: 189, Mismatches: 29, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
152 1 0.01
153 82 0.43
154 105 0.56
155 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (152 bp):
GCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGTGCCGCTAAT
GCCACTAAAGATCAACATAAAACGACACATTGTGCTTAACTTTTTACGGCGTTTTTCAGAAAGCA
CCGCGAATGGTCAACCTATAGC
Found at i:81451460 original size:27 final size:27
Alignment explanation
Indices: 81451425--81451481 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
81451415 TAAAAGCCTA
*
81451425 TTGTCTCAAATTTTAGTAAAATTAGTT
1 TTGTATCAAATTTTAGTAAAATTAGTT
81451452 TTGTATCAAATTTTAGTAAAATTAGTT
1 TTGTATCAAATTTTAGTAAAATTAGTT
81451479 TTG
1 TTG
81451482 GTCCTAACTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.49
Consensus pattern (27 bp):
TTGTATCAAATTTTAGTAAAATTAGTT
Found at i:81451616 original size:43 final size:43
Alignment explanation
Indices: 81451568--81451653 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
81451558 TGTTTGTATA
81451568 CTTGTAATTTTTTCGAACAGATTGGTTTAATAAAATTATTCAT
1 CTTGTAATTTTTTCGAACAGATTGGTTTAATAAAATTATTCAT
81451611 CTTGTAATTTTTTCGAACAGATTGGTTTAATAAAATTATTCAT
1 CTTGTAATTTTTTCGAACAGATTGGTTTAATAAAATTATTCAT
81451654 GAATTATATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.47
Consensus pattern (43 bp):
CTTGTAATTTTTTCGAACAGATTGGTTTAATAAAATTATTCAT
Found at i:81456047 original size:20 final size:20
Alignment explanation
Indices: 81456010--81456047 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81456000 TGTTGTTTGG
*
81456010 CCCATCTTTCTTTTCTCTTA
1 CCCATCTTTCTTTCCTCTTA
81456030 CCCATCTTAT-TTTCCTCT
1 CCCATCTT-TCTTTCCTCT
81456048 CTTGTATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 15 0.94
21 1 0.06
ACGTcount: A:0.11, C:0.37, G:0.00, T:0.53
Consensus pattern (20 bp):
CCCATCTTTCTTTCCTCTTA
Found at i:81456977 original size:10 final size:10
Alignment explanation
Indices: 81456964--81456994 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
81456954 AAAAAAACTT
81456964 AAAATTTAAA
1 AAAATTTAAA
81456974 AAAATTT-AA
1 AAAATTTAAA
81456983 AAAATTTAAA
1 AAAATTTAAA
81456993 AA
1 AA
81456995 TTTATCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:81457004 original size:10 final size:9
Alignment explanation
Indices: 81456964--81456998 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
81456954 AAAAAAACTT
81456964 AAAATTTAAA
1 AAAATTT-AA
81456974 AAAATTTAA
1 AAAATTTAA
81456983 AAAATTT-A
1 AAAATTTAA
81456991 AAAATTTA
1 AAAATTTA
81456999 TCAAAAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 8 0.33
9 9 0.38
10 7 0.29
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (9 bp):
AAAATTTAA
Found at i:81457076 original size:22 final size:23
Alignment explanation
Indices: 81457033--81457084 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
81457023 ACCCAAAAAA
*
81457033 TTTAAAAACTTAGAAAATCTATT
1 TTTAAAAAATTAGAAAATCTATT
81457056 TTTAAAAAATT-GTAAAA-CTATT
1 TTTAAAAAATTAG-AAAATCTATT
81457078 TTTAAAA
1 TTTAAAA
81457085 TTAAAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 13 0.48
23 14 0.52
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (23 bp):
TTTAAAAAATTAGAAAATCTATT
Found at i:81460265 original size:33 final size:33
Alignment explanation
Indices: 81460205--81460321 Score: 137
Period size: 33 Copynumber: 3.5 Consensus size: 33
81460195 AGTACATCAT
*
81460205 CAATCCAACCAAACACACCAGATGCTCACT-AGAGC
1 CAATCCAACC-ATCACACCA-ATGCTCA-TAAGAGC
* *
81460240 CAATCCATCCATCGCACCAATGCTCATAAGAGC
1 CAATCCAACCATCACACCAATGCTCATAAGAGC
* *
81460273 TAATCCAACCATCACACCAATGCTCATAAAAGC
1 CAATCCAACCATCACACCAATGCTCATAAGAGC
* *
81460306 TAAACCAACCATCACA
1 CAATCCAACCATCACA
81460322 TCAAATAGAG
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
32 1 0.01
33 56 0.77
34 7 0.10
35 9 0.12
ACGTcount: A:0.40, C:0.36, G:0.09, T:0.15
Consensus pattern (33 bp):
CAATCCAACCATCACACCAATGCTCATAAGAGC
Found at i:81472966 original size:50 final size:49
Alignment explanation
Indices: 81472871--81472972 Score: 134
Period size: 49 Copynumber: 2.1 Consensus size: 49
81472861 TAAGACCATG
* *
81472871 CCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGA
1 CCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGA
* **
81472920 CCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCCCATGTAAGA
1 CCAAGACATGGCATTGATAAGTT-CTATAAGGC-AAGGAAACCATGTAAGA
81472970 CCA
1 CCA
81472973 TGCCAAGGCA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
49 21 0.46
50 21 0.46
51 4 0.09
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.22
Consensus pattern (49 bp):
CCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGA
Found at i:81472983 original size:50 final size:49
Alignment explanation
Indices: 81472849--81472983 Score: 128
Period size: 50 Copynumber: 2.6 Consensus size: 49
81472839 GCACTAAGAA
*
81472849 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGAAACCATGTAAGACCATGCC-A---A-GGCATTGATAAGTTCTATAAGGC
* * * * *
81472903 AAGGAAATCATGTAAGACCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGAAACCATGTAAGACCATGCCAAGGCATTGATAAGTT-CTATAAGGC
**
81472953 AAAGG-TCCCATGTAAGACCATGCCAAGGCAT
1 -AAGGAAACCATGTAAGACCATGCCAAGGCAT
81472984 GACATTGGTG
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
49 13 0.19
50 29 0.43
51 4 0.06
53 1 0.01
54 20 0.30
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (49 bp):
AAGGAAACCATGTAAGACCATGCCAAGGCATTGATAAGTTCTATAAGGC
Found at i:81473027 original size:53 final size:54
Alignment explanation
Indices: 81472849--81473040 Score: 218
Period size: 53 Copynumber: 3.6 Consensus size: 54
81472839 GCACTAAGAA
* *
81472849 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
81472903 AAGGAAATCATGTAAG---A--CCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
81472953 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGACATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
81473006 AAGGATACCACGTAAGGCCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
81473041 ATGGCAAGTT
Statistics
Matches: 114, Mismatches: 16, Indels: 17
0.78 0.11 0.12
Matches are distributed among these distances:
49 21 0.18
50 17 0.15
51 5 0.04
52 4 0.04
53 32 0.28
54 15 0.13
55 20 0.18
ACGTcount: A:0.36, C:0.19, G:0.25, T:0.20
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:81489543 original size:43 final size:43
Alignment explanation
Indices: 81489475--81489649 Score: 185
Period size: 43 Copynumber: 4.1 Consensus size: 43
81489465 AAAGCTTGTA
* * *
81489475 CAATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATAT
* *
81489518 CAATGCCACTGTCCCAGACAG-GGTCTTACACGGAATCAAATA-
1 CAATGCCAATGTCCCAGAC-GTGGTCTTACACGTAATCAAATAT
* * * * *
81489560 CGATGCCAATGTCCCAGACATAGTATTACACGTAAATCTCAA-AT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGT-AATC-AAATAT
* * *
81489604 CGATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACATAT
1 CAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATAT
81489647 CAA
1 CAA
81489650 AATCCTATGT
Statistics
Matches: 107, Mismatches: 19, Indels: 12
0.78 0.14 0.09
Matches are distributed among these distances:
42 27 0.25
43 48 0.45
44 32 0.30
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATAT
Found at i:81496139 original size:2 final size:2
Alignment explanation
Indices: 81496127--81496163 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
81496117 ACAAGGAAAT
* *
81496127 GA GA TA GA GA GA GA GA GA GA GA GA GA GA GG GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
81496164 GGGGTCGGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.51, T:0.03
Consensus pattern (2 bp):
GA
Found at i:81510384 original size:49 final size:50
Alignment explanation
Indices: 81510311--81510455 Score: 181
Period size: 49 Copynumber: 3.0 Consensus size: 50
81510301 CCTGACTTTT
**
81510311 ATATATCGAGGCCGATACCATGTCCCAGATAGGTCTTACACTAGCTCT-C
1 ATATATCGAGGCCGATGTCATGTCCCAGATAGGTCTTACACTAGCTCTGC
* * *
81510360 ATCTATCG-GTGTCGATGTCATGTCCCAGATAGGTCTTACACTAGCT-TGT
1 ATATATCGAG-GCCGATGTCATGTCCCAGATAGGTCTTACACTAGCTCTGC
* * *
81510409 ATATCTCGAGGCCGATGT-ATGTCCCAGACATGTCTTACACTAGCTCT
1 ATATATCGAGGCCGATGTCATGTCCCAGATAGGTCTTACACTAGCTCT
81510456 TGTCTCAATG
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
48 27 0.33
49 54 0.66
50 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.30
Consensus pattern (50 bp):
ATATATCGAGGCCGATGTCATGTCCCAGATAGGTCTTACACTAGCTCTGC
Found at i:81510394 original size:97 final size:97
Alignment explanation
Indices: 81510273--81510455 Score: 246
Period size: 97 Copynumber: 1.9 Consensus size: 97
81510263 GCACATTAAA
*
81510273 GTCGATGCCATGTCCCGAACAGGTCTTAC-CT-GACTTTTATATATCGAGGCCGATACCATGTCC
1 GTCGATGCCATGTCCCGAACAGGTCTTACACTAG-CTTGTATATATCGAGGCCGAT-CCATGTCC
*
81510336 CAGATAGGTCTTACACTAGCTCTCATCTATCGGT
64 CAGACAGGTCTTACACTAGCTCTCATCTATCGGT
* * * **
81510370 GTCGATGTCATGTCCC-AGATAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGTATGTCCC
1 GTCGATGCCATGTCCCGA-ACAGGTCTTACACTAGCTTGTATATATCGAGGCCGATCCATGTCCC
*
81510434 AGACATGTCTTACACTAGCTCT
65 AGACAGGTCTTACACTAGCTCT
81510456 TGTCTCAATG
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
96 1 0.01
97 52 0.69
98 21 0.28
99 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (97 bp):
GTCGATGCCATGTCCCGAACAGGTCTTACACTAGCTTGTATATATCGAGGCCGATCCATGTCCCA
GACAGGTCTTACACTAGCTCTCATCTATCGGT
Found at i:81510450 original size:48 final size:47
Alignment explanation
Indices: 81510275--81510592 Score: 209
Period size: 48 Copynumber: 6.7 Consensus size: 47
81510265 ACATTAAAGT
*
81510275 CGATGCCATGTCCC-GAACAGGTCTTAC-CT-GACTTTTATATATCGAGGC
1 CGATG-CATGTCCCAG-ACATGTCTTACACTAG-C-TTTATATATCGAGGC
* * * * * *
81510323 CGATACCATGTCCCAGATAGGTCTTACACTAGCTCTCATCTATCG-GTGT
1 CGAT-GCATGTCCCAGACATGTCTTACACTAGCT-TTATATATCGAG-GC
* * *
81510372 CGATGTCATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTT-TATATATCGAGGC
* * * * * * *
81510421 CGATGTATGTCCCAGACATGTCTTACACTAGCTCT-TGTCTCAATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTTATATATCGAGGC
* * * * * * * *
81510467 TGATACATGTCCTAGACATGTCTTACATTGGCTTGTATATCTTGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT-TATATATCGAGGC
* * * * *
81510515 CGATGCATGTCCAAGACATGTCTTGCACTGGCTCTCATA-AT-GTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TTATATATCGAGGC
*
81510561 CGATGCATGTCCCAGACAAGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
81510593 ACACATATCA
Statistics
Matches: 216, Mismatches: 42, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
46 65 0.30
47 3 0.01
48 88 0.41
49 58 0.27
50 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (47 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTTATATATCGAGGC
Found at i:81510507 original size:94 final size:96
Alignment explanation
Indices: 81510233--81510592 Score: 296
Period size: 94 Copynumber: 3.8 Consensus size: 96
81510223 ATGCCGACGC
* * * *
81510233 CATGTCCCAGACATGGTCTTACACTGGCTAGC-A-C-ATTAAAGTCGATGCCATGTCCC-GAACA
1 CATGTCCCAGACAT-GTCTTACACTAGCT--CTATCTATCAATGTCGATGACATGTCCCAG-ACA
* * *
81510294 GGTCTTAC-CT-GACTTTTATATATCGAGGCCGATAC
62 GGTCTTACACTAG-CTTGTATATCTCGAGGCCGAT-G
* * ** * *
81510329 CATGTCCCAGATAGGTCTTACACTAGCTCTCATCTATCGGTGTCGATGTCATGTCCCAGATAGGT
1 CATGTCCCAGACATGTCTTACACTAGCTCT-ATCTATCAATGTCGATGACATGTCCCAGACAGGT
81510394 CTTACACTAGCTTGTATATCTCGAGGCCGATG
65 CTTACACTAGCTTGTATATCTCGAGGCCGATG
* * * * * *
81510426 TATGTCCCAGACATGTCTTACACTAGCTCT-TGTCTCAATGTTGAT-ACATGTCCTAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTCTATCTATCAATGTCGATGACATGTCCCAGACAGGTC
* * * *
81510489 TTACATTGGCTTGTATATCTTGAGGTCGATG
66 TTACACTAGCTTGTATATCTCGAGGCCGATG
* * * *
81510520 CATGTCCAAGACATGTCTTGCACTGGCTC--TC-AT-AATGTGGCCGATG-CATGTCCCAGACAA
1 CATGTCCCAGACATGTCTTACACTAGCTCTATCTATCAATGT---CGATGACATGTCCCAGACAG
81510580 GTCTTACACTAGC
63 GTCTTACACTAGC
81510593 ACACATATCA
Statistics
Matches: 214, Mismatches: 39, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
91 5 0.02
92 1 0.00
93 2 0.01
94 92 0.43
95 24 0.11
96 13 0.06
97 54 0.25
98 22 0.10
99 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.31
Consensus pattern (96 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTATCTATCAATGTCGATGACATGTCCCAGACAGGTC
TTACACTAGCTTGTATATCTCGAGGCCGATG
Found at i:81516034 original size:46 final size:46
Alignment explanation
Indices: 81515967--81516092 Score: 234
Period size: 46 Copynumber: 2.7 Consensus size: 46
81515957 AACCCGCCCC
* *
81515967 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
81516013 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
81516059 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81516093 TGCTCAACCA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
46 78 1.00
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:81516549 original size:30 final size:30
Alignment explanation
Indices: 81516515--81516574 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81516505 ATTTAATACG
81516515 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
81516545 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
81516575 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:81519700 original size:49 final size:49
Alignment explanation
Indices: 81519638--81519774 Score: 143
Period size: 49 Copynumber: 2.8 Consensus size: 49
81519628 TAGTTAGGAC
* * * * *
81519638 ATCAAAGTCAATGCCATGTCCCACACAGGTCTTACATTGACTTTTATAT
1 ATCAAAGTTAATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATAT
* * * * *
81519687 ATCAAGGTTAATGCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATTT
1 ATCAAAGTTAATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATAT
* * *
81519736 ATCGATGTTGATGCCATGTCCCAGACAGG--TTACACTGAC
1 ATCAAAGTTAATGCCATGTCCCAGACAGGTCTTACACTGAC
81519775 ACGTAACAAG
Statistics
Matches: 72, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
47 9 0.12
49 63 0.88
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (49 bp):
ATCAAAGTTAATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATAT
Found at i:81519850 original size:48 final size:48
Alignment explanation
Indices: 81519792--81519963 Score: 208
Period size: 48 Copynumber: 3.6 Consensus size: 48
81519782 AAGCTAACAC
* *
81519792 CATGTTCCAGACAGGTCTTACACTAGCTTGTATATCTTGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTTGAGGCTGATG
*
81519840 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT-TCTGA---TGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-T-GTAT--ATCT-TGAGGCTGATG
* **
81519889 CATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCCAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTTGAGGCTGATG
*
81519937 CATGTCCCAGACATGTCTTACATTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
81519964 ACACACATCA
Statistics
Matches: 106, Mismatches: 9, Indels: 18
0.80 0.07 0.14
Matches are distributed among these distances:
45 3 0.03
46 1 0.01
47 3 0.03
48 57 0.54
49 33 0.31
50 3 0.03
51 1 0.01
52 5 0.05
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTTGAGGCTGATG
Found at i:81526123 original size:40 final size:40
Alignment explanation
Indices: 81526068--81526291 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
81526058 TATTCGGATG
81526068 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
81526108 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
81526151 ATACCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * ** * *
81526191 ATGTCAGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
81526231 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
81526271 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
81526292 ATACTTGGGT
Statistics
Matches: 159, Mismatches: 22, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
39 13 0.08
40 109 0.69
41 1 0.01
43 36 0.23
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:81526211 original size:83 final size:80
Alignment explanation
Indices: 81526072--81526291 Score: 266
Period size: 83 Copynumber: 2.7 Consensus size: 80
81526062 CGGATGATAT
* * **
81526072 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCAGGGCTAAGTCCCGAAGGCATTCA
81526137 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
* * *
81526155 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTATGTCAGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCAGGGCTAAGTCCCGAAGGCATTCA
*
81526220 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
81526235 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATC-CGGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCAGGGCTAAGTCCCGAAG
81526292 ATACTTGGGT
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
79 16 0.13
80 42 0.35
81 2 0.02
83 61 0.50
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCAGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:81527200 original size:21 final size:21
Alignment explanation
Indices: 81527170--81527258 Score: 90
Period size: 21 Copynumber: 4.1 Consensus size: 21
81527160 CTCACAAAGA
* *
81527170 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
81527190 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
81527211 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
*
81527232 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
81527256 AAA
1 AAA
81527259 TCTTTTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 6 0.10
21 36 0.62
23 1 0.02
24 15 0.26
ACGTcount: A:0.54, C:0.10, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:81527251 original size:24 final size:21
Alignment explanation
Indices: 81527170--81527238 Score: 95
Period size: 21 Copynumber: 3.3 Consensus size: 21
81527160 CTCACAAAGA
* * *
81527170 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTGGAC
*
81527190 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
81527211 AAAAAGAGAAGTAACTTGGAC
1 AAAAAGAGAAGTAACTTGGAC
81527232 AAAAAGA
1 AAAAAGA
81527239 AACGAAGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
20 6 0.14
21 37 0.86
ACGTcount: A:0.55, C:0.09, G:0.25, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTGGAC
Found at i:81534628 original size:40 final size:40
Alignment explanation
Indices: 81534530--81534713 Score: 239
Period size: 40 Copynumber: 4.5 Consensus size: 40
81534520 TATTCGGATG
81534530 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAGTTGCT
*
81534573 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* **
81534613 ATATCCGGGCGAAGTCCCGAAGGCATTCATGCTA-TTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTG-CT
* *
81534653 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
*
81534693 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
81534714 ATACTTGGGT
Statistics
Matches: 126, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
39 15 0.12
40 77 0.61
41 3 0.02
43 31 0.25
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTGCT
Found at i:81537334 original size:121 final size:121
Alignment explanation
Indices: 81537128--81537349 Score: 306
Period size: 121 Copynumber: 1.8 Consensus size: 121
81537118 AACAGAAAGA
*
81537128 GATAGGATGAGAGAACCAGACTAAAAATGAAGGGGAAAAGATGAAATATAGAGAGTTTGAAAATG
1 GATAGGATGAGAGAACCAGACTAAAAATGAAGGGAAAAAGATGAAATATAGAGAGTTTGAAAATG
* * *
81537193 GAAATCAACGGATTTAGTGGAAAAAAGCTCTCCTTGGTAATCTGGAAGCTTTTTAGG
66 AAAACCAACGGATTCAGTGG-AAAAAGCTCTCCTTGGTAATCTGGAAGCTTTTTAGG
* * * *
81537250 GATAGGGTGAGAGAA-CATGACTGAAAATGAA-GGAAAAAGATTAAATATAGAGAGTTT-TAAAT
1 GATAGGATGAGAGAACCA-GACTAAAAATGAAGGGAAAAAGATGAAATATAGAGAGTTTGAAAAT
* *
81537312 AGAAAACCAATGGATTCGGTGGAAAAAGCTCTCCTTGG
65 -GAAAACCAACGGATTCAGTGGAAAAAGCTCTCCTTGG
81537350 AAGTCTGAAA
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
120 20 0.23
121 42 0.48
122 26 0.30
ACGTcount: A:0.42, C:0.09, G:0.27, T:0.23
Consensus pattern (121 bp):
GATAGGATGAGAGAACCAGACTAAAAATGAAGGGAAAAAGATGAAATATAGAGAGTTTGAAAATG
AAAACCAACGGATTCAGTGGAAAAAGCTCTCCTTGGTAATCTGGAAGCTTTTTAGG
Found at i:81545933 original size:33 final size:33
Alignment explanation
Indices: 81545882--81545947 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
81545872 ATAGGGATTT
81545882 TTTTGAGGATGAAGATTATTACCCATATAATTA
1 TTTTGAGGATGAAGATTATTACCCATATAATTA
* *
81545915 TTTTGAGGTTGAATATTATTACCCATATAATTA
1 TTTTGAGGATGAAGATTATTACCCATATAATTA
81545948 AATTGCTCGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (33 bp):
TTTTGAGGATGAAGATTATTACCCATATAATTA
Found at i:81549003 original size:35 final size:35
Alignment explanation
Indices: 81548964--81549033 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
81548954 CAAACGCAAT
*
81548964 GAAATTTTTAAAGGAGCTTTTAGCAAATAAACGGA
1 GAAATTTTTAAAAGAGCTTTTAGCAAATAAACGGA
*
81548999 GAAATTTTTAAAAGAGCTTTTAGCAAATAAGCGGA
1 GAAATTTTTAAAAGAGCTTTTAGCAAATAAACGGA
81549034 AGATGGATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.29
Consensus pattern (35 bp):
GAAATTTTTAAAAGAGCTTTTAGCAAATAAACGGA
Found at i:81550421 original size:13 final size:13
Alignment explanation
Indices: 81550403--81550430 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81550393 GCGAACAATA
81550403 TGCAACACGGCCG
1 TGCAACACGGCCG
81550416 TGCAACACGGCCG
1 TGCAACACGGCCG
81550429 TG
1 TG
81550431 TGCACCCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.36, G:0.32, T:0.11
Consensus pattern (13 bp):
TGCAACACGGCCG
Found at i:81553423 original size:40 final size:40
Alignment explanation
Indices: 81553364--81553588 Score: 280
Period size: 40 Copynumber: 5.6 Consensus size: 40
81553354 CGGATGATAA
*
81553364 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATT
* *
81553404 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATT
* * *
81553444 TCGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCTAGTTACTA-ATT
81553485 -CGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTTACTAAT-T
* * * *
81553524 CCGAGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAAT-T
81553564 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81553589 AGCAAGTAGT
Statistics
Matches: 164, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 2 0.01
40 158 0.96
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTAATT
Found at i:81553580 original size:120 final size:120
Alignment explanation
Indices: 81553360--81553588 Score: 331
Period size: 120 Copynumber: 1.9 Consensus size: 120
81553350 TATTCGGATG
*
81553360 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCAAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAGTCCCAAAGGCA
* **
81553425 TTTGTGCTAGTGACTAATTTCGGGCTAAGCTCCGAAGGCATTTGTGCGAGTTACT
66 TTTGTGCGAGTGACTAATACCGGGCTAAGCTCCGAAGGCATTTGTGCGAGTTACT
* *
81553480 ATAATCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACT-ATATCCGAGCTAAGTCCCAAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACTAAT-TCCGAGCTAAGTCCCAAAGG
*
81553543 CATTTGTGCGAGTTACT-ATAACCGGGCTAAG-TCCCGAAGGCATTTG
64 CATTTGTGCGAGTGACTAAT-ACCGGGCTAAGCT-CCGAAGGCATTTG
81553589 AGCAAGTAGT
Statistics
Matches: 98, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
119 6 0.06
120 92 0.94
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (120 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGAGCTAAGTCCCAAAGGCA
TTTGTGCGAGTGACTAATACCGGGCTAAGCTCCGAAGGCATTTGTGCGAGTTACT
Found at i:81553603 original size:80 final size:78
Alignment explanation
Indices: 81553367--81553620 Score: 289
Period size: 80 Copynumber: 3.2 Consensus size: 78
81553357 ATGATAACCG
* * * *
81553367 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCAAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTTGTG
* *
81553431 CTAGTGACTA-ATTTC
65 CAAGT-ATTATA-TTC
*
81553446 GGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAATCGGGCTAAGTCCCGAAGGCATTTGT
1 -GGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGT
** * *
81553510 GTGAGTTACTATATCC
64 GCAAG-TATTATATTC
* *
81553526 GAGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGAG
1 G-GCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTG
81553591 CAAGTAGTTATATTC
65 CAAGTA-TTATATTC
*
81553606 GGCTAAATCCCGAAG
1 GGCTAAGTCCCGAAG
81553621 ATGCTTGGGT
Statistics
Matches: 150, Mismatches: 17, Indels: 15
0.82 0.09 0.08
Matches are distributed among these distances:
79 16 0.11
80 130 0.87
81 4 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (78 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGC
AAGTATTATATTC
Found at i:81553887 original size:22 final size:21
Alignment explanation
Indices: 81553846--81553889 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
81553836 GAATGTGCAT
81553846 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
81553868 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
81553890 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:81561143 original size:40 final size:40
Alignment explanation
Indices: 81561088--81561392 Score: 445
Period size: 40 Copynumber: 7.6 Consensus size: 40
81561078 CGGATGATAA
* *
81561088 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
81561128 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
81561168 ACGGGCTAAG-CTCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTC-CCGAAGGCATTTGTGCGAGTTACTATAT
*
81561208 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
81561248 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
81561288 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
81561328 CCGAGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
81561368 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
81561393 AGCAAGTAGT
Statistics
Matches: 243, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.00
40 240 0.99
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:81561691 original size:22 final size:21
Alignment explanation
Indices: 81561650--81561693 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
81561640 GAATGTGCAT
81561650 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
81561672 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
81561694 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:81562806 original size:70 final size:71
Alignment explanation
Indices: 81562692--81562833 Score: 277
Period size: 70 Copynumber: 2.0 Consensus size: 71
81562682 TGGAAATTTT
81562692 TTTTTGGACTGTGAAAATAAATGAAATAAGTCCGTAAATACCTCGTGTTCGACTCCGGCAACGGT
1 TTTTTGGACTGTGAAAATAAATGAAATAAGTCCGTAAATACCTCGTGTTCGACTCCGGCAACGGT
81562757 CTCGGG
66 CTCGGG
81562763 TTTTTGGACTGTG-AAATAAATGAAATAAGTCCGTAAATACCTCGTGTTCGACTCCGGCAACGGT
1 TTTTTGGACTGTGAAAATAAATGAAATAAGTCCGTAAATACCTCGTGTTCGACTCCGGCAACGGT
81562827 CTCGGG
66 CTCGGG
81562833 T
1 T
81562834 ACGGGGTGTT
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 58 0.82
71 13 0.18
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (71 bp):
TTTTTGGACTGTGAAAATAAATGAAATAAGTCCGTAAATACCTCGTGTTCGACTCCGGCAACGGT
CTCGGG
Found at i:81563453 original size:90 final size:91
Alignment explanation
Indices: 81563300--81563481 Score: 357
Period size: 90 Copynumber: 2.0 Consensus size: 91
81563290 TTTCAATGAT
81563300 TTGACAACATTGATGCTACTCTACAGTAGATTTGTCAGCACCTCCACATCTCATCACCAGACCCA
1 TTGACAACATTGATGCTACTCTACAGTAGATTTGTCAGCACCTCCACATCTCATCACCAGACCCA
81563365 -CTCGCGAACCATCCAGCGATGAAGA
66 CCTCGCGAACCATCCAGCGATGAAGA
81563390 TTGACAACATTGATGCTACTCTACAGTAGATTTGTCAGCACCTCCACATCTCATCACCAGACCCA
1 TTGACAACATTGATGCTACTCTACAGTAGATTTGTCAGCACCTCCACATCTCATCACCAGACCCA
81563455 CCTCGCGAACCATCCAGCGATGAAGA
66 CCTCGCGAACCATCCAGCGATGAAGA
81563481 T
1 T
81563482 GTTCAAAAAC
Statistics
Matches: 91, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
90 65 0.71
91 26 0.29
ACGTcount: A:0.30, C:0.32, G:0.15, T:0.23
Consensus pattern (91 bp):
TTGACAACATTGATGCTACTCTACAGTAGATTTGTCAGCACCTCCACATCTCATCACCAGACCCA
CCTCGCGAACCATCCAGCGATGAAGA
Found at i:81569308 original size:17 final size:17
Alignment explanation
Indices: 81569283--81569321 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
81569273 TTTTAAAAGG
81569283 AAAAA-AAATGAATCTT
1 AAAAACAAATGAATCTT
81569299 AAAAACAAATGAATCTT
1 AAAAACAAATGAATCTT
81569316 AAAAAC
1 AAAAAC
81569322 TTAATAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.64, C:0.10, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAAACAAATGAATCTT
Found at i:81585850 original size:133 final size:133
Alignment explanation
Indices: 81585612--81585877 Score: 505
Period size: 133 Copynumber: 2.0 Consensus size: 133
81585602 GAGTAAGCAA
*
81585612 TTAAGCTTAGTAAGTTCGTATAACACAGAATTTAACTTACCATTTAAACACAATTCAGGTAAGTA
1 TTAAGCTTAGTAAGTTCGTATAACACAGAATTTAACTTACCATTTAAACACAATTCAGGCAAGTA
81585677 ACTCAAAGCATAACACAATTCAATTTGGCCAAAGCCTAACACATGATAATTAACCAAGTTAGCTA
66 ACTCAAAGCATAACACAATTCAATTTGGCCAAAGCCTAACACATGATAATTAACCAAGTTAGCTA
81585742 TGT
131 TGT
*
81585745 TTAAGCTTAGTAAGTTCGTATAACACAGAATTTAACTTACCATTTAACCACAATTCAGGCAAGTA
1 TTAAGCTTAGTAAGTTCGTATAACACAGAATTTAACTTACCATTTAAACACAATTCAGGCAAGTA
*
81585810 ACTCAAAGCATAACACAATTCAATTTGGCCAAAGCCTAACACATGATCATTAACCAAGTTAGCTA
66 ACTCAAAGCATAACACAATTCAATTTGGCCAAAGCCTAACACATGATAATTAACCAAGTTAGCTA
81585875 TGT
131 TGT
81585878 ATTCATATAA
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 130 1.00
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (133 bp):
TTAAGCTTAGTAAGTTCGTATAACACAGAATTTAACTTACCATTTAAACACAATTCAGGCAAGTA
ACTCAAAGCATAACACAATTCAATTTGGCCAAAGCCTAACACATGATAATTAACCAAGTTAGCTA
TGT
Found at i:81592536 original size:48 final size:47
Alignment explanation
Indices: 81592465--81592631 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 47
81592455 AAGCTGACGC
* *
81592465 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCAAGGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTT-TATATCTCAAGGTCGATG
* * ** * *
81592513 CATGTCCTAGACATGTCTTACACTAGCTCT-CGTCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCAAGGTCGATG
* * * *
81592559 CATCTCCCAGACATGTCTTACACTGGCTCTCATAATGT---GGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TTAT-ATCTCAAGGTCGATG
*
81592605 CATGTCCTAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
81592632 ACACATATCA
Statistics
Matches: 95, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 66 0.69
47 1 0.01
48 26 0.27
49 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.31
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTTATATCTCAAGGTCGATG
Found at i:81597890 original size:18 final size:18
Alignment explanation
Indices: 81597820--81597880 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 18
81597810 TTAATGTAGA
*
81597820 TGAAA-AATAATGATATT
1 TGAAATAATAATTATATT
*
81597837 TGAAAT-AT-TTTATATAT
1 TGAAATAATAATTATAT-T
**
81597854 AAAAATAATAATTATATT
1 TGAAATAATAATTATATT
81597872 TGAAATAAT
1 TGAAATAAT
81597881 TATTTCATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
16 5 0.15
17 12 0.36
18 10 0.30
19 6 0.18
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (18 bp):
TGAAATAATAATTATATT
Found at i:81601261 original size:13 final size:12
Alignment explanation
Indices: 81601232--81601284 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
81601222 TTAAATTAAA
81601232 ATTTTCAAAAAT
1 ATTTTCAAAAAT
*
81601244 ATTTTCCAAAAT
1 ATTTTCAAAAAT
*
81601256 ATTTTTTAAAAACT
1 A-TTTTCAAAAA-T
* *
81601270 CTTTTAAAAAAT
1 ATTTTCAAAAAT
81601282 ATT
1 ATT
81601285 GCTAAACTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
12 15 0.45
13 17 0.52
14 1 0.03
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (12 bp):
ATTTTCAAAAAT
Found at i:81611889 original size:13 final size:13
Alignment explanation
Indices: 81611871--81611897 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81611861 TAGGTGTTAG
81611871 TATGTGTAAATGA
1 TATGTGTAAATGA
81611884 TATGTGTAAATGA
1 TATGTGTAAATGA
81611897 T
1 T
81611898 GTATTGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (13 bp):
TATGTGTAAATGA
Found at i:81617039 original size:48 final size:49
Alignment explanation
Indices: 81616924--81617044 Score: 172
Period size: 50 Copynumber: 2.5 Consensus size: 49
81616914 GTGTGATCTT
*
81616924 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCTATATAAGTGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATAT-AGTGATCCC
* * **
81616974 ATGTAAGACCATATCTGGGATATGGCATTGGCATCGATAT-GTGATTTC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAGTGATCCC
*
81617022 GTGTAAGACCATGTCTGGGACAT
1 ATGTAAGACCATGTCTGGGACAT
81617045 AGAATCGATA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
48 26 0.41
50 37 0.59
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (49 bp):
ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATAGTGATCCC
Found at i:81622523 original size:20 final size:20
Alignment explanation
Indices: 81622498--81622554 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
81622488 ATGATTTGAC
*
81622498 ATGATATACACATGATATGT
1 ATGATATGCACATGATATGT
81622518 ATGATATGCACATGATATGT
1 ATGATATGCACATGATATGT
*
81622538 ATAATATGCACATGATA
1 ATGATATGCACATGATA
81622555 AATTCATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (20 bp):
ATGATATGCACATGATATGT
Found at i:81622532 original size:11 final size:10
Alignment explanation
Indices: 81622480--81622554 Score: 57
Period size: 11 Copynumber: 7.5 Consensus size: 10
81622470 CATGAGATTT
81622480 TGATAT-ACA
1 TGATATGACA
*
81622489 TGATTTGACA
1 TGATATGACA
*
81622499 TGATATACACA
1 TGATAT-GACA
*
81622510 TGATATG-TA
1 TGATATGACA
81622519 TGATATGCACA
1 TGATATG-ACA
*
81622530 TGATATG-TA
1 TGATATGACA
*
81622539 TAATATGCACA
1 TGATATG-ACA
81622550 TGATA
1 TGATA
81622555 AATTCATATA
Statistics
Matches: 50, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
9 20 0.40
10 8 0.16
11 22 0.44
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:81622684 original size:24 final size:25
Alignment explanation
Indices: 81622602--81622671 Score: 131
Period size: 25 Copynumber: 2.8 Consensus size: 25
81622592 GAGGAAGCGC
81622602 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
81622627 AAAAGGGCTTTGGCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
81622652 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
81622672 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:81622925 original size:31 final size:31
Alignment explanation
Indices: 81622890--81622973 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
81622880 CGTTTACAGT
81622890 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
81622921 AAAGGCTTCGGCCCAGTGACATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
81622952 AAAGGCTTCGGCCTAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
81622974 CTGAGATTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 4 0.08
31 45 0.92
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:81624025 original size:48 final size:48
Alignment explanation
Indices: 81623911--81624037 Score: 128
Period size: 48 Copynumber: 2.6 Consensus size: 48
81623901 AGGGTAAGAT
* * * * * *
81623911 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAAAAT
1 GTCGATGCCATGTCCCAAACATGGTCTTACTCTAGCTCACATAAAAAG
* * * * ***
81623959 GCCAATGCTATGTTCCAAACATGGTCTTACTCTAGCTCACATATCGAG
1 GTCGATGCCATGTCCCAAACATGGTCTTACTCTAGCTCACATAAAAAG
*
81624007 GTCGATGCCATGTCCCAAACATGATCTTACT
1 GTCGATGCCATGTCCCAAACATGGTCTTACT
81624038 GTAACATCTT
Statistics
Matches: 61, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (48 bp):
GTCGATGCCATGTCCCAAACATGGTCTTACTCTAGCTCACATAAAAAG
Found at i:81627217 original size:48 final size:48
Alignment explanation
Indices: 81627151--81627429 Score: 308
Period size: 48 Copynumber: 5.8 Consensus size: 48
81627141 ATAAATGCCA
*
81627151 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCG
* * * ** *
81627199 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCG
*
81627247 ATGCCATGTTCCAAACATGGT-TCTACACTGGCTCACATATCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCT-TACACTGGCTCACATATCGAGGCCG
**** * * * * ** ** * *
81627295 ATATTGTGTCCCAAGCATAGTCTTACATTAGCTCTTATATAAATGCCA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCG
** *
81627343 ATTTCATGTTCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCG
*
81627391 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATA
81627430 ACCCTAATAT
Statistics
Matches: 182, Mismatches: 47, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
47 1 0.01
48 180 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGGCCG
Found at i:81627251 original size:96 final size:96
Alignment explanation
Indices: 81627124--81627429 Score: 463
Period size: 96 Copynumber: 3.2 Consensus size: 96
81627114 GAGTGCTGCA
*
81627124 CTTATACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
1 CTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
81627189 ATCGAGGCCGATGCCATGTCCCAGACATGGT
66 ATCGAGGCCGATGCCATGTCCCAGACATGGT
*
81627220 CTTACACTAGCTCTCATATAAATGCCGATGCCATGTTCCAAACATGGT-TCTACACTGGCTCACA
1 CTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCT-TACACTGGCTCACA
**** *
81627284 TATCGAGGCCGATATTGTGTCCCA-AGCATAGT
65 TATCGAGGCCGATGCCATGTCCCAGA-CATGGT
* * **
81627316 CTTACATTAGCTCTTATATAAATGCCAATTTCATGTTCCAAACATGGTCTTACACTGGCTCACAT
1 CTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
81627381 ATCGAGGCCGATGCCATGTCCCAGACATGGT
66 ATCGAGGCCGATGCCATGTCCCAGACATGGT
* *
81627412 CTTACACTGGCTCACATA
1 CTTACACTAGCTCTCATA
81627430 ACCCTAATAT
Statistics
Matches: 185, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
95 2 0.01
96 181 0.98
97 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (96 bp):
CTTACACTAGCTCTCATATAAATGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCACAT
ATCGAGGCCGATGCCATGTCCCAGACATGGT
Found at i:81639840 original size:20 final size:20
Alignment explanation
Indices: 81639811--81639858 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 20
81639801 TGGGCTAAGG
* *
81639811 ACACGAGCGTGTCCCAAGCC
1 ACACGGGCGTGTCCCAACCC
81639831 ACACGGGC--GTCCCAACCC
1 ACACGGGCGTGTCCCAACCC
*
81639849 ACATGGGCGT
1 ACACGGGCGT
81639859 ATGACTCTCC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 16 0.70
20 7 0.30
ACGTcount: A:0.23, C:0.40, G:0.27, T:0.10
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAACCC
Found at i:81639844 original size:18 final size:18
Alignment explanation
Indices: 81639821--81639858 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
81639811 ACACGAGCGT
*
81639821 GTCCCAAGCCACACGGGC
1 GTCCCAACCCACACGGGC
*
81639839 GTCCCAACCCACATGGGC
1 GTCCCAACCCACACGGGC
81639857 GT
1 GT
81639859 ATGACTCTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.42, G:0.26, T:0.11
Consensus pattern (18 bp):
GTCCCAACCCACACGGGC
Found at i:81645814 original size:27 final size:27
Alignment explanation
Indices: 81645784--81645862 Score: 122
Period size: 27 Copynumber: 2.9 Consensus size: 27
81645774 GTGTCATCAA
* *
81645784 TAAATATGATAGGCACATAGCCATAGG
1 TAAATACGATTGGCACATAGCCATAGG
*
81645811 TAAATACGATTGGCACATAGCCACAGG
1 TAAATACGATTGGCACATAGCCATAGG
*
81645838 TAAATACGATTGGCACAAAGCCATA
1 TAAATACGATTGGCACATAGCCATA
81645863 ATCAAGATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (27 bp):
TAAATACGATTGGCACATAGCCATAGG
Found at i:81645881 original size:22 final size:22
Alignment explanation
Indices: 81645850--81645907 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
81645840 AATACGATTG
*
81645850 GCACAAAGCCATAATCAAGATA
1 GCACAGAGCCATAATCAAGATA
* * * * *
81645872 GCACAGAGCCATATTTAGGCTG
1 GCACAGAGCCATAATCAAGATA
81645894 GCACAGAGCCATAA
1 GCACAGAGCCATAA
81645908 ACAGATTAAG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.24, G:0.21, T:0.16
Consensus pattern (22 bp):
GCACAGAGCCATAATCAAGATA
Found at i:81653792 original size:16 final size:16
Alignment explanation
Indices: 81653773--81653803 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81653763 CTTATTCACT
81653773 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
81653789 TACTTACTTACTTAA
1 TACTCACTTACTTAA
81653804 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:81653809 original size:20 final size:20
Alignment explanation
Indices: 81653770--81653809 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
81653760 AAACTTATTC
* *
81653770 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
81653790 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
81653810 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:81654124 original size:53 final size:54
Alignment explanation
Indices: 81653995--81654249 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
81653985 ACACGGGTAC
* * * *
81653995 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
81654044 CTTACCATTGCCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
81654097 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * ** * * *
81654152 CTTATCAATGCCATGTCTTAACATGGTCTTACATGATTTCTTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
81654205 CCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
81654250 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 38 0.22
50 1 0.01
52 2 0.01
53 50 0.29
54 10 0.06
55 68 0.40
56 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:81654186 original size:108 final size:110
Alignment explanation
Indices: 81654042--81654242 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
81654032 ATCCTTTTGA
* ** *
81654042 AACTTACCATTGCCATGTCTTGGCATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTAACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
81654105 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
81654150 AACTTATCAATGCCATGTCTTAACATGGTCTTACATGATTTCTTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTAACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
81654215 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
81654243 TATCCTTAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 1 0.01
108 46 0.57
109 7 0.09
110 27 0.33
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTAACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:81667483 original size:49 final size:49
Alignment explanation
Indices: 81667422--81667646 Score: 254
Period size: 49 Copynumber: 4.5 Consensus size: 49
81667412 TGAGGTCACG
* *
81667422 TGTGTAGTACTAAGTCCAGGCTACTACATGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCA
*** * * *
81667471 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGAC-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAA-TTGGTCGCA
* * ** * *
81667520 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 --TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTCGCA
* * *
81667572 CGTGTAGTACTAAGTGCAGGCTACTACATATACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCA
81667621 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
81667647 TGCGTACCAG
Statistics
Matches: 144, Mismatches: 27, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
49 66 0.46
50 41 0.28
51 36 0.25
52 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCA
Found at i:81674288 original size:49 final size:49
Alignment explanation
Indices: 81674115--81674303 Score: 227
Period size: 50 Copynumber: 3.8 Consensus size: 49
81674105 TGAGGTCACG
* * * * * *
81674115 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAA-TTAGGTC-CA
* ** *
81674166 TGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAGGTCAA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATTAGGTCCA
* *
81674215 GTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT-GGTCGCA
1 -TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATTAGGTC-CA
81674265 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATA
1 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATA
81674304 GCTTTGGCTA
Statistics
Matches: 118, Mismatches: 18, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
49 41 0.35
50 43 0.36
51 34 0.29
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATAATTAGGTCCA
Found at i:81679676 original size:19 final size:19
Alignment explanation
Indices: 81679639--81679686 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
81679629 TTTTTATAAT
*
81679639 TTATCATTTA--TCGGGCA
1 TTATCATTTATTTCAGGCA
81679656 TTATCATTTATTTCAGGCA
1 TTATCATTTATTTCAGGCA
*
81679675 TTATCACTTATT
1 TTATCATTTATT
81679687 GGGCTTTGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 10 0.37
19 17 0.63
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (19 bp):
TTATCATTTATTTCAGGCA
Found at i:81685565 original size:16 final size:17
Alignment explanation
Indices: 81685532--81685575 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
81685522 AATAATAACA
*
81685532 ATAA-AATAAATCTGAT
1 ATAATAATAAATCTAAT
81685548 ATAATAATAAA-CTAAT
1 ATAATAATAAATCTAAT
81685564 ATAATAATAAAT
1 ATAATAATAAAT
81685576 AAAATAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 19 0.76
17 6 0.24
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (17 bp):
ATAATAATAAATCTAAT
Found at i:81686833 original size:22 final size:22
Alignment explanation
Indices: 81686805--81686850 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
81686795 GTAGAGAAAA
*
81686805 TAAATTTATCTACTTTAATAAG
1 TAAATTTATCTACTTTAACAAG
81686827 TAAATTTATCTACTTTAACAAG
1 TAAATTTATCTACTTTAACAAG
81686849 TA
1 TA
81686851 CATCCTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.41, C:0.11, G:0.04, T:0.43
Consensus pattern (22 bp):
TAAATTTATCTACTTTAACAAG
Found at i:81690429 original size:55 final size:53
Alignment explanation
Indices: 81690309--81690496 Score: 243
Period size: 55 Copynumber: 3.5 Consensus size: 53
81690299 TAAGGATATC
* * *
81690309 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAACT
1 ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGTACT
* * *
81690362 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAATGCAAAGGTCCT
1 -ATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAGGTACT
* *
81690418 ATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGCAAGGATACA
1 ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGG-TACT
* *
81690471 ACGTAAGACCATGTCAAGACATGGCA
1 ATGTAAGACCATGCCAAGACATGGCA
81690497 ATGGTAAGTT
Statistics
Matches: 118, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
52 4 0.03
53 32 0.27
54 34 0.29
55 42 0.36
56 6 0.05
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
ATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAGGTACT
Found at i:81690508 original size:53 final size:54
Alignment explanation
Indices: 81690300--81690507 Score: 235
Period size: 53 Copynumber: 3.9 Consensus size: 54
81690290 TTGGTAAGAT
*
81690300 AAGGATATC-ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATA-CAATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
81690354 AAGGA-ACTCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAATGC
1 AAGGATAC-AATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * *
81690409 AAAGG-TCCTATGTAAGACCATGCCAAGACATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACAATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
81690462 AAGGATACAACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACAATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
81690508 AAAAAGGAAA
Statistics
Matches: 133, Mismatches: 15, Indels: 13
0.83 0.09 0.08
Matches are distributed among these distances:
52 5 0.04
53 42 0.32
54 39 0.29
55 42 0.32
56 5 0.04
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (54 bp):
AAGGATACAATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:81696271 original size:40 final size:41
Alignment explanation
Indices: 81696214--81696463 Score: 257
Period size: 40 Copynumber: 6.3 Consensus size: 41
81696204 CTAACAGGGT
* * *
81696214 TAAGTCCCGAAGACATTTGTGCTAGTGATTAAT-TCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* *
81696254 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * * *
81696294 TAAGTCCCGAAGGTATTGGTGCGAGTTACTAAT-CCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
81696334 TAAGTCCCGAAGGCATTTGTGCGAGTTG-CT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAG-TGACTAATATCCGGGC
* * * * *
81696374 TAAGACCCGAAGGCATTTATGCTAGAGAC-CATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
* * * *
81696414 TAAGACCCGAAGGC-CTTGTGCGAGTG-GTTATATCC-GGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
*
81696452 TAAATCCCGAAG
1 TAAGTCCCGAAG
81696464 ATACTTGGGT
Statistics
Matches: 180, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
38 13 0.07
39 17 0.09
40 149 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATATCCGGGC
Found at i:81726076 original size:21 final size:21
Alignment explanation
Indices: 81726052--81726107 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
81726042 GAAACAGGGC
*
81726052 ACACGCCCGTGTGGAAGGGAA
1 ACACACCCGTGTGGAAGGGAA
*
81726073 ACACACCCGTGTGGAAGGGCA
1 ACACACCCGTGTGGAAGGGAA
81726094 ACACACCCGTGTGG
1 ACACACCCGTGTGG
81726108 TCATTATAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.27, C:0.29, G:0.34, T:0.11
Consensus pattern (21 bp):
ACACACCCGTGTGGAAGGGAA
Found at i:81726427 original size:30 final size:30
Alignment explanation
Indices: 81726382--81726450 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
81726372 CGTGGCTAGA
* * **
81726382 GGCCTTGTTCTCCACATGGTTGAGACACAC
1 GGCCGTGTCCTCCACACAGTTGAGACACAC
81726412 GGCCGTGTCCTCCACACAGTTGAGACACAC
1 GGCCGTGTCCTCCACACAGTTGAGACACAC
81726442 GGCCGTGTC
1 GGCCGTGTC
81726451 TCTGCCTGTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.19, C:0.33, G:0.26, T:0.22
Consensus pattern (30 bp):
GGCCGTGTCCTCCACACAGTTGAGACACAC
Found at i:81727753 original size:46 final size:46
Alignment explanation
Indices: 81727695--81727918 Score: 154
Period size: 46 Copynumber: 4.7 Consensus size: 46
81727685 AGGTTATTGT
81727695 GAGCTAGTGTAAGACATGTCTGGGACATGCATCTGCCACA-T-A-ATGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGAGATGA
* *
81727741 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGAGATGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATTGAGATGA
* * * * *
81727789 GTGCTAGTGTAAGACATATCTGGTACATGCATCGAC-TACGAGATGT
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACAT-TGAGATGA
* * * ** *
81727835 G-TC-AGTGTAAGACCATGTTTGGGACATGGCATCGGCACAGATATGCTA
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATTGAGATG--A
* * *
81727883 GAACTTGTGTAAGACCATGTTTGGGACATGGCATCG
1 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCG
81727919 GCACCTTACC
Statistics
Matches: 145, Mismatches: 20, Indels: 22
0.78 0.11 0.12
Matches are distributed among these distances:
44 9 0.06
45 16 0.11
46 41 0.28
47 26 0.18
48 22 0.15
49 1 0.01
50 30 0.21
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATGA
Found at i:81731425 original size:49 final size:49
Alignment explanation
Indices: 81731347--81731592 Score: 240
Period size: 49 Copynumber: 5.0 Consensus size: 49
81731337 GTAGCTGAAG
* *
81731347 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * **
81731396 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * ** * * *
81731446 CCATTTAATACACATAGTAGCCTGCACTTAGTACTACATACGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * * *
81731496 GTTATCAGGTACGCATAGTAGCCTACAGTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * * *
81731546 CAATCTGGTGCACGTAGTAGCTTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
81731593 TCAAAATAGC
Statistics
Matches: 153, Mismatches: 41, Indels: 6
0.76 0.20 0.03
Matches are distributed among these distances:
49 76 0.50
50 43 0.28
51 34 0.22
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Done.