Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 241 of 345
Found at i:81731536 original size:99 final size:98
Alignment explanation
Indices: 81731359--81731592 Score: 265
Period size: 100 Copynumber: 2.4 Consensus size: 98
81731349 ATCTGGTACG
* * * * *
81731359 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTACACT
* *
81731424 TAGTACTACACACAT-GACCTAACCATTTAATACA
66 TAGTACTA-ACACATCGACC-AACAATCTAATACA
* * *
81731458 CATAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTTATCAGGTACGCATAGTAGCCTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACACATAGTAGCCTACA
* ** *
81731523 GTTAGTACT-ACACATGCGACCAACAATCTGGTGCA
64 CTTAGTACTAACACAT-CGACCAACAATCTAATACA
* *
81731558 CGTAGTAGCTTGCACTTAGTACTACACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC
81731593 TCAAAATAGC
Statistics
Matches: 113, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
99 37 0.33
100 42 0.37
101 34 0.30
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACACATAGTAGCCTACACT
TAGTACTAACACATCGACCAACAATCTAATACA
Found at i:81731965 original size:35 final size:35
Alignment explanation
Indices: 81731914--81731980 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
81731904 ATATTTCATA
*
81731914 ATAACAATCTTCATATCATATAAATAACATTAATG
1 ATAACAATCATCATATCATATAAATAACATTAATG
*
81731949 ATAATAATCATCATATCATATAAATAACATTA
1 ATAACAATCATCATATCATATAAATAACATTA
81731981 TATTACTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (35 bp):
ATAACAATCATCATATCATATAAATAACATTAATG
Found at i:81731983 original size:19 final size:19
Alignment explanation
Indices: 81731926--81731983 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
81731916 AACAATCTTC
81731926 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
* *
81731945 A-AT--GAT-AATAATCATC
1 ATATCATATAAATAA-CATT
81731961 ATATCATATAAATAACATT
1 ATATCATATAAATAACATT
81731980 ATAT
1 ATAT
81731984 TACTTAAATT
Statistics
Matches: 30, Mismatches: 4, Indels: 10
0.68 0.09 0.23
Matches are distributed among these distances:
15 5 0.17
16 6 0.20
17 2 0.07
18 2 0.07
19 10 0.33
20 5 0.17
ACGTcount: A:0.52, C:0.10, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATCATATAAATAACATT
Found at i:81733751 original size:11 final size:13
Alignment explanation
Indices: 81733720--81733745 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81733710 TATGGTCAAT
81733720 GATTTCATGAAAA
1 GATTTCATGAAAA
81733733 GATTTCATGAAAA
1 GATTTCATGAAAA
81733746 TTTCATTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.15, T:0.31
Consensus pattern (13 bp):
GATTTCATGAAAA
Found at i:81737818 original size:37 final size:37
Alignment explanation
Indices: 81737763--81737865 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 37
81737753 TGTGAGTACG
* *
81737763 TGTAAGACCATAGCTGGGCTATGGCATTGTAATGACA
1 TGTAAGACCATAGTTGGGCTATGGCATTGTAATCACA
* *
81737800 TGTAAGACCATAGTTGGGCTATGGCATTGTGATCCCA
1 TGTAAGACCATAGTTGGGCTATGGCATTGTAATCACA
*
81737837 TGTAAAACCAT-GTTTGGGAC-ATGGCATTG
1 TGTAAGACCATAG-TTGGG-CTATGGCATTG
81737866 GCATCGATAT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
36 1 0.02
37 57 0.97
38 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (37 bp):
TGTAAGACCATAGTTGGGCTATGGCATTGTAATCACA
Found at i:81737884 original size:48 final size:48
Alignment explanation
Indices: 81737827--81737971 Score: 209
Period size: 48 Copynumber: 3.0 Consensus size: 48
81737817 GCTATGGCAT
*
81737827 TGTGATCCCATGTAAAACCATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAAACCATGTCTGGGACATGGCATTGGCATCGATA
* * *
81737875 TGTGATCCCATGTAACACCATGTCTGGGACATAGCATTGGCATCGAAA
1 TGTGATCCCATGTAAAACCATGTCTGGGACATGGCATTGGCATCGATA
* * * * *
81737923 TGTGATTCCATGTAAGACCATATCTAGGATATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAAACCATGTCTGGGACATGGCATTGGCATCGATA
81737971 T
1 T
81737972 ATGGTTTCGT
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 86 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAAACCATGTCTGGGACATGGCATTGGCATCGATA
Found at i:81738005 original size:48 final size:48
Alignment explanation
Indices: 81737827--81738007 Score: 184
Period size: 48 Copynumber: 3.8 Consensus size: 48
81737817 GCTATGGCAT
* * *
81737827 TGTGATCCCATGTAAAACCATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATTCCATGTAAGACCATGTTTGAGACATGGCATTGGCATCGATA
* * * * * *
81737875 TGTGATCCCATGTAACACCATGTCTGGGACATAGCATTGGCATCGAAA
1 TGTGATTCCATGTAAGACCATGTTTGAGACATGGCATTGGCATCGATA
* * *
81737923 TGTGATTCCATGTAAGACCATATCT-AGGATATGGCATTGGCATCGATA
1 TGTGATTCCATGTAAGACCATGTTTGA-GACATGGCATTGGCATCGATA
* * * * * *
81737971 TATGGTTTCGTATAAGACCATGTTTTAGACATGGCAT
1 TGTGATTCCATGTAAGACCATGTTTGAGACATGGCAT
81738008 CGATATGAGA
Statistics
Matches: 112, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
48 111 0.99
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (48 bp):
TGTGATTCCATGTAAGACCATGTTTGAGACATGGCATTGGCATCGATA
Found at i:81742449 original size:15 final size:15
Alignment explanation
Indices: 81742417--81742445 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81742407 ATTTTCAGTG
81742417 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
81742432 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
81742446 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:81744364 original size:13 final size:13
Alignment explanation
Indices: 81744346--81744371 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81744336 GCTTATTCTG
81744346 TGTGTGTTTTTTT
1 TGTGTGTTTTTTT
81744359 TGTGTGTTTTTTT
1 TGTGTGTTTTTTT
81744372 ATGTTCATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (13 bp):
TGTGTGTTTTTTT
Found at i:81750726 original size:28 final size:28
Alignment explanation
Indices: 81750684--81750786 Score: 134
Period size: 28 Copynumber: 3.7 Consensus size: 28
81750674 TGGCCCCTTT
*
81750684 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
81750712 GGGCCCAGTCACATTTATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * * *
81750740 TGGCCTAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
81750768 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
81750787 ATCATGCAAT
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 62 1.00
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:81754396 original size:21 final size:20
Alignment explanation
Indices: 81754354--81754396 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
81754344 AGTACACCCA
81754354 ATCACATATGAATGAAATAC
1 ATCACATATGAATGAAATAC
*
81754374 ATCATCATATTAATTGAAA-AC
1 ATCA-CATATGAA-TGAAATAC
81754395 AT
1 AT
81754397 GATTGAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 11 0.55
22 5 0.25
ACGTcount: A:0.49, C:0.14, G:0.07, T:0.30
Consensus pattern (20 bp):
ATCACATATGAATGAAATAC
Found at i:81760277 original size:47 final size:47
Alignment explanation
Indices: 81760223--81760601 Score: 553
Period size: 47 Copynumber: 8.1 Consensus size: 47
81760213 TTAGGATTTT
** * * *
81760223 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81760270 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
81760317 ATGTGATGAATGTGAACATGCATATATGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
81760364 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
81760411 ATGTGATGAATGTAAACATGCATATATGAGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
81760458 ATATGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
**
81760505 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
81760552 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
81760599 ATG
1 ATG
81760602 CGAAATGTGT
Statistics
Matches: 304, Mismatches: 27, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 301 0.99
48 3 0.01
ACGTcount: A:0.37, C:0.11, G:0.27, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:81760694 original size:46 final size:46
Alignment explanation
Indices: 81760575--81760696 Score: 208
Period size: 46 Copynumber: 2.7 Consensus size: 46
81760565 GGAAGTGTAT
* *
81760575 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAACGTGTATGAGATGG
*
81760621 ATATGAGGTAAAGCCGAATGGCTAATGTGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAACGTGTATGAGATGG
*
81760667 ATATGTGGTAAAGCCAAATGGCTAATGTGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGA
81760697 GAGATGTAGG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 71 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAACGTGTATGAGATGG
Found at i:81765267 original size:30 final size:29
Alignment explanation
Indices: 81765176--81765267 Score: 148
Period size: 30 Copynumber: 3.1 Consensus size: 29
81765166 TTTTATACCG
81765176 GAATAACATTGACTACATTAAAAAATTCT
1 GAATAACATTGACTACATTAAAAAATTCT
* *
81765205 AAATAACACTGACTACATTAAAAAAATTCT
1 GAATAACATTGACTACATT-AAAAAATTCT
81765235 GAATAACATTGACTACATTAAAAAATTGCT
1 GAATAACATTGACTACATTAAAAAATT-CT
81765265 GAA
1 GAA
81765268 ATCTAGACTC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
29 25 0.44
30 32 0.56
ACGTcount: A:0.50, C:0.14, G:0.08, T:0.28
Consensus pattern (29 bp):
GAATAACATTGACTACATTAAAAAATTCT
Found at i:81768661 original size:14 final size:14
Alignment explanation
Indices: 81768606--81768727 Score: 68
Period size: 14 Copynumber: 8.6 Consensus size: 14
81768596 ACTAATTAAT
*
81768606 CTAAACCCTAAGCC
1 CTAAACCCTAAACC
* *
81768620 TCTTAACCCCT-ATCC
1 -C-TAAACCCTAAACC
* *
81768635 CATAAACACTAAACA
1 C-TAAACCCTAAACC
*
81768650 CTAAACCTTAAACC
1 CTAAACCCTAAACC
* *
81768664 CTTAACCCCAAACC
1 CTAAACCCTAAACC
* * *
81768678 CTTACACCTTAAACT
1 C-TAAACCCTAAACC
81768693 CT-AACCCTAAACC
1 CTAAACCCTAAACC
* * *
81768706 CTAAACCATAATCT
1 CTAAACCCTAAACC
81768720 CTAAACCC
1 CTAAACCC
81768728 ATAATTCATC
Statistics
Matches: 78, Mismatches: 25, Indels: 9
0.70 0.22 0.08
Matches are distributed among these distances:
13 10 0.13
14 45 0.58
15 16 0.21
16 7 0.09
ACGTcount: A:0.39, C:0.39, G:0.01, T:0.21
Consensus pattern (14 bp):
CTAAACCCTAAACC
Found at i:81768676 original size:21 final size:21
Alignment explanation
Indices: 81768652--81768712 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
81768642 ACTAAACACT
81768652 AAACCTTAAACCCTTAACCCC
1 AAACCTTAAACCCTTAACCCC
* * *
81768673 AAACCCTTACA-CCTTAAACTC
1 AAA-CCTTAAACCCTTAACCCC
* * *
81768694 TAACCCTAAACCCTAAACC
1 AAACCTTAAACCCTTAACC
81768713 ATAATCTCTA
Statistics
Matches: 30, Mismatches: 8, Indels: 4
0.71 0.19 0.10
Matches are distributed among these distances:
20 5 0.17
21 19 0.63
22 6 0.20
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (21 bp):
AAACCTTAAACCCTTAACCCC
Found at i:81768778 original size:7 final size:7
Alignment explanation
Indices: 81768766--81768811 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
81768756 ATTAACTCCC
81768766 AAACCTT
1 AAACCTT
81768773 AAACCTT
1 AAACCTT
*
81768780 AAACCAT
1 AAACCTT
* *
81768787 ATATCTT
1 AAACCTT
*
81768794 AAACCAT
1 AAACCTT
81768801 AAACCTT
1 AAACCTT
81768808 AAAC
1 AAAC
81768812 TGTAATGATA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (7 bp):
AAACCTT
Found at i:81768783 original size:14 final size:14
Alignment explanation
Indices: 81768766--81768811 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
81768756 ATTAACTCCC
*
81768766 AAACCTTAAACCTT
1 AAACCATAAACCTT
* *
81768780 AAACCATATATCTT
1 AAACCATAAACCTT
81768794 AAACCATAAACCTT
1 AAACCATAAACCTT
81768808 AAAC
1 AAAC
81768812 TGTAATGATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (14 bp):
AAACCATAAACCTT
Found at i:81769033 original size:41 final size:41
Alignment explanation
Indices: 81768982--81769339 Score: 368
Period size: 41 Copynumber: 8.7 Consensus size: 41
81768972 GTTATATGAC
*
81768982 TTTTAGCGGCGTTTTAGGAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGGT
* * *
81769023 TTTTATCGGCGTTTAACCG-AAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTA-CGAAAAGCGCCGCTAATGCTCTGGT
* * *
81769064 ATTTAGTGGCGTTTTATCG-AAAGCGTCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTA-CGAAAAGCGCCGCTAATGCTCTGGT
* *
81769105 TTTTAGCGGTGTTTTACCG-AAAGCGCCACTAATGCTCTGGT
1 TTTTAGCGGCGTTTTA-CGAAAAGCGCCGCTAATGCTCTGGT
* * *
81769146 ATTTAGCGCCGTTTTACCG-AAAGTGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTA-CGAAAAGCGCCGCTAATGCTCTGGT
* * *
81769187 TTTTAGCGGCATTTTA-TAGAAAGCGCTGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACGA-AAAGCGCCGCTAATGCTCTGGT
* * * * * *
81769228 TTTTAGTGGGGTTTTACCAAAAGCGTCACTAATACTCTGGT
1 TTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGGT
* * * *
81769269 TTTTAGCGGCGTTTTAGCAAAAAACGCCACTATTGCTCT-GT
1 TTTTAGCGGCGTTTTA-CGAAAAGCGCCGCTAATGCTCTGGT
* * *
81769310 TTTTAGCGGTGTTTTACCAAAAACGCCGCT
1 TTTTAGCGGCGTTTTACGAAAAGCGCCGCT
81769340 CTTACTCTGT
Statistics
Matches: 266, Mismatches: 46, Indels: 11
0.82 0.14 0.03
Matches are distributed among these distances:
40 12 0.05
41 235 0.88
42 19 0.07
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACGAAAAGCGCCGCTAATGCTCTGGT
Found at i:81769325 original size:123 final size:123
Alignment explanation
Indices: 81768982--81769325 Score: 440
Period size: 123 Copynumber: 2.8 Consensus size: 123
81768972 GTTATATGAC
** * * *
81768982 TTTTAGCGGCGTTTTAGGAAAAGCGCCGCTAATGCTCTGGTTTTTATCGGCGTTTAACCGAAAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGT
* * *
81769047 GCCGCTAATGCTCTGGTATTTAGTGGCGTTTTATCGAAAGCGTCGCTAATGCTCTGGT
66 GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTATAGAAAGCGTCGCTAATGCTCTGGT
* * * *
81769105 TTTTAGCGGTGTTTTACCGAAAGCGCCACTAATGCTCTGGTATTTAGCGCCGTTTTACCGAAAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGT
*
81769170 GCCGCTAATGCTCTGGTTTTTAGCGGCATTTTATAGAAAGCG-CTGCTAATGCTCTGGT
66 GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTATAGAAAGCGTC-GCTAATGCTCTGGT
* * * * ** *
81769228 TTTTAGTGGGGTTTTACCAAAAGCGTCACTAATACTCTGGTTTTTAGCGGCGTTTTAGCAAAAAA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTA-CCGAAAG
* * * *
81769293 CGCCACTATTGCTCT-GTTTTTAGCGGTGTTTTA
65 TGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTA
81769326 CCAAAAACGC
Statistics
Matches: 191, Mismatches: 28, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
122 1 0.01
123 174 0.91
124 16 0.08
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.35
Consensus pattern (123 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTACCGAAAGT
GCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTATAGAAAGCGTCGCTAATGCTCTGGT
Found at i:81774217 original size:22 final size:22
Alignment explanation
Indices: 81774183--81774247 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
81774173 GTAAATACGT
*
81774183 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
81774205 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
81774227 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
81774248 AATAATTGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:81774451 original size:41 final size:41
Alignment explanation
Indices: 81774394--81774511 Score: 173
Period size: 41 Copynumber: 2.9 Consensus size: 41
81774384 GCCACCAGTT
* *
81774394 GATCCACGGTCGTCAAGCAACCATACGATCCTTAATCGATG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGATG
* *
81774435 GATCCACGGTCGTCAAGCAACCATGCAATCCTCAATCGTTG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGATG
* * *
81774476 GATCCACGATCGTCAAACAAACATGCGATCCTCAAT
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
81774512 TTCTTCCTCC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.31, C:0.31, G:0.18, T:0.21
Consensus pattern (41 bp):
GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGATG
Found at i:81774865 original size:27 final size:27
Alignment explanation
Indices: 81774779--81775172 Score: 198
Period size: 27 Copynumber: 14.6 Consensus size: 27
81774769 TACAAACCAA
* * *
81774779 GGGTATTTCAGTAATTTTGCTAACT-AA
1 GGGTATTTCTGTAATTTT-CTAAATCAG
* * *
81774806 TGGTATTTCTGTAATTTT-TGAAAGTTAA
1 GGGTATTTCTGTAATTTTCT-AAA-TCAG
*
81774834 AGGTATTTCTGTAATTTTCTAAATCAG
1 GGGTATTTCTGTAATTTTCTAAATCAG
* * *
81774861 GGGTATTTTTATAATTTTCTAAACCAG
1 GGGTATTTCTGTAATTTTCTAAATCAG
* *
81774888 GGGTATTTCGGTAATTTTCTAAATCAA
1 GGGTATTTCTGTAATTTTCTAAATCAG
*
81774915 GGGTATTTC-GATAATTTT-TCAAATTAG
1 GGGTATTTCTG-TAATTTTCT-AAATCAG
81774942 GGGTATTT-TGGTAATTTTAC-AAATC-G
1 GGGTATTTCT-GTAATTTT-CTAAATCAG
** * *
81774968 AGGGTATTTCAATAA-TTTCACAAATCAA
1 -GGGTATTTCTGTAATTTTC-TAAATCAG
* *
81774996 GGGTATTTCAGTAATTTTAC-AAACCAG
1 GGGTATTTCTGTAATTTT-CTAAATCAG
81775023 GGGTATTT-TGGTAATTTTAC-AAA-CGAG
1 GGGTATTTCT-GTAATTTT-CTAAATC-AG
** *
81775050 AAGTATTT-TGATAATTTTAC-AAACCAG
1 GGGTATTTCTG-TAATTTT-CTAAATCAG
81775077 GGGTA-TTCTAGTAATTTTACT-AATC-G
1 GGGTATTTCT-GTAATTTT-CTAAATCAG
* * * *
81775103 AAGGTATTT-TGGTAATTTTGTAAACCAA
1 -GGGTATTTCT-GTAATTTTCTAAATCAG
* * *
81775131 GGGTA-TTCAGTAATTTTGTAAA-CTAA
1 GGGTATTTCTGTAATTTTCTAAATC-AG
*
81775157 GGGTATTTCAGTAATT
1 GGGTATTTCTGTAATT
81775173 CTACCCTACA
Statistics
Matches: 299, Mismatches: 37, Indels: 62
0.75 0.09 0.16
Matches are distributed among these distances:
25 3 0.01
26 36 0.12
27 228 0.76
28 30 0.10
29 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.41
Consensus pattern (27 bp):
GGGTATTTCTGTAATTTTCTAAATCAG
Found at i:81774906 original size:54 final size:54
Alignment explanation
Indices: 81774835--81775172 Score: 219
Period size: 54 Copynumber: 6.3 Consensus size: 54
81774825 GAAAGTTAAA
* * **
81774835 GGTATTTCTGTAATTTT-CTAAATCAGGGGTATTTTTATAATTTTCTAAACCAGG
1 GGTATTTCGGTAATTTTAC-AAACCAGGGGTATTTCGATAATTTTCTAAACCAGG
* * **
81774889 GGTATTTCGGTAATTTT-CTAAATCAAGGGTATTTCGATAATTTT-TCAAATTAGG
1 GGTATTTCGGTAATTTTAC-AAACCAGGGGTATTTCGATAATTTTCT-AAACCAGG
* * * * * *
81774943 GGTATTTTGGTAATTTTACAAATC-GAGGGTATTTCAATAA-TTTCACAAATCAAG
1 GGTATTTCGGTAATTTTACAAACCAG-GGGTATTTCGATAATTTTC-TAAACCAGG
* * * * *
81774997 GGTATTTCAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTAC-AAACGAGA
1 GGTATTTCGGTAATTTTACAAACCAGGGGTATTTCGATAATTTT-CTAAACCAGG
* * * * * * *
81775051 AGTATTTTGATAATTTTACAAACCAGGGGTA-TTCTAGTAATTTTACTAATCGA-A
1 GGTATTTCGGTAATTTTACAAACCAGGGGTATTTCGA-TAATTTT-CTAAACCAGG
* ** * * * *
81775105 GGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTC-AGTAATTTTGTAAACTAAG
1 GGTATTTCGGTAATTTTACAAACCAGGGGTATTTCGA-TAATTTTCTAAACCAGG
*
81775158 GGTATTTCAGTAATT
1 GGTATTTCGGTAATT
81775173 CTACCCTACA
Statistics
Matches: 232, Mismatches: 41, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
52 5 0.02
53 28 0.12
54 188 0.81
55 10 0.04
56 1 0.00
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (54 bp):
GGTATTTCGGTAATTTTACAAACCAGGGGTATTTCGATAATTTTCTAAACCAGG
Found at i:81774957 original size:81 final size:82
Alignment explanation
Indices: 81774807--81775172 Score: 303
Period size: 81 Copynumber: 4.5 Consensus size: 82
81774797 GCTAACTAAT
* * * *
81774807 GGTATTTCTGTAATTTT-TGAAAGTTAAAGGTATTTC-TGTAATTTT-CTAAATCAGGGGTATTT
1 GGTATTTCAGTAATTTTCT-AAA-TCAAGGGTATTTCGAGTAATTTTAC-AAATCAGGGGTATTT
**
81774869 TTATAATTTT-CTAAACCAGG
63 TGGTAATTTTAC-AAACCAGG
* * *
81774889 GGTATTTCGGTAATTTTCTAAATCAAGGGTATTTCGA-TAATTTTTCAAATTAGGGGTATTTTGG
1 GGTATTTCAGTAATTTTCTAAATCAAGGGTATTTCGAGTAATTTTACAAATCAGGGGTATTTTGG
*
81774953 TAATTTTACAAATC-GAG
66 TAATTTTACAAACCAG-G
* * *
81774970 GGTATTTCAATAA-TTTCACAAATCAAGGGTATTTC-AGTAATTTTACAAACCAGGGGTATTTTG
1 GGTATTTCAGTAATTTTC-TAAATCAAGGGTATTTCGAGTAATTTTACAAATCAGGGGTATTTTG
* *
81775033 GTAATTTTACAAACGAGA
65 GTAATTTTACAAACCAGG
* * * * * * *
81775051 AGTATTT-TGATAATTTTAC-AAACCAGGGGTA-TTCTAGTAATTTTACTAATC-GAAGGTATTT
1 GGTATTTCAG-TAATTTT-CTAAATCAAGGGTATTTCGAGTAATTTTACAAATCAG-GGGTATTT
** *
81775112 TGGTAATTTTGTAAACCAAG
63 TGGTAATTTTACAAACCAGG
*
81775132 GGTA-TTCAGTAATTTTGTAAA-CTAAGGGTATTTC-AGTAATT
1 GGTATTTCAGTAATTTTCTAAATC-AAGGGTATTTCGAGTAATT
81775173 CTACCCTACA
Statistics
Matches: 233, Mismatches: 34, Indels: 36
0.77 0.11 0.12
Matches are distributed among these distances:
79 1 0.00
80 35 0.15
81 170 0.73
82 25 0.11
83 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (82 bp):
GGTATTTCAGTAATTTTCTAAATCAAGGGTATTTCGAGTAATTTTACAAATCAGGGGTATTTTGG
TAATTTTACAAACCAGG
Found at i:81775233 original size:27 final size:26
Alignment explanation
Indices: 81775156--81775236 Score: 99
Period size: 26 Copynumber: 3.1 Consensus size: 26
81775146 TTGTAAACTA
*
81775156 AGGGTATTTCAGTAATTCTACCCTAC
1 AGGGTATTTCAGTAATACTACCCTAC
* * * *
81775182 AGGGCATTTAAGTAATCCTACCCTAT
1 AGGGTATTTCAGTAATACTACCCTAC
*
81775208 AGGGGTATTTCAGTAATACTAGCCTAC
1 A-GGGTATTTCAGTAATACTACCCTAC
81775235 AG
1 AG
81775237 ATATGAGATT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 24 0.53
27 21 0.47
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.31
Consensus pattern (26 bp):
AGGGTATTTCAGTAATACTACCCTAC
Found at i:81778752 original size:6 final size:6
Alignment explanation
Indices: 81778722--81778914 Score: 146
Period size: 6 Copynumber: 31.3 Consensus size: 6
81778712 AAGAAACATT
* *
81778722 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
81778769 GTGACAGA ATCAAA ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * *
81778820 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATTAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
81778871 A-CAGA ATCAGA ATCAGT ATCAAGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCAGA AT
81778915 GTGAATGCAA
Statistics
Matches: 152, Mismatches: 18, Indels: 34
0.75 0.09 0.17
Matches are distributed among these distances:
5 10 0.07
6 121 0.80
7 14 0.09
8 7 0.05
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:81778779 original size:25 final size:24
Alignment explanation
Indices: 81778722--81778914 Score: 146
Period size: 25 Copynumber: 7.8 Consensus size: 24
81778712 AAGAAACATT
* *
81778722 ATCAGAA-CTAGAATCAAAATGAGA
1 ATCAGAATC-AGAATCAGAATCAGA
81778746 ATCAGAATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGAATCAGA
* * *
81778769 GTGACAGAATCAAAATCAAAATCAGA
1 AT--CAGAATCAGAATCAGAATCAGA
*
81778795 ATCAGAATTAGGTAA-CAGAATCAGA
1 ATCAGAATCA-G-AATCAGAATCAGA
*
81778820 ATCAGTATCAGGTAA-CAGAATCAGA
1 ATCAGAATCA-G-AATCAGAATCAGA
* * *
81778845 ATCAGAACCAGAATTAGAATTAGGTA
1 ATCAGAATCAGAATCAGAATCA-G-A
*
81778871 A-CAGAATCAGAATCAGTATCAAGTA
1 ATCAGAATCAGAATCAGAATC-AG-A
81778896 A-CAGAATCAGAATCAGAAT
1 ATCAGAATCAGAATCAGAAT
81778915 GTGAATGCAA
Statistics
Matches: 139, Mismatches: 20, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
23 3 0.02
24 33 0.24
25 97 0.70
26 6 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (24 bp):
ATCAGAATCAGAATCAGAATCAGA
Found at i:81778786 original size:31 final size:31
Alignment explanation
Indices: 81778743--81778914 Score: 158
Period size: 31 Copynumber: 5.5 Consensus size: 31
81778733 AATCAAAATG
*
81778743 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* * *
81778774 AGAATCAAAATCAAAATCAGAATCA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
*
81778804 AGGTAA-CAGAATCAGAATCAGTATCAGGTAAC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAAC
* * *
81778836 AGAATCAGAATCAGAACCAGAATTA-G-AATT
1 AGAATCAGAATCAGAATCAGAATCAGGTAA-C
* *
81778866 AGGTAA-CAGAATCAGAATCAGTATCAAGTAAC
1 A-G-AATCAGAATCAGAATCAGAATCAGGTAAC
81778898 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
81778915 GTGAATGCAA
Statistics
Matches: 113, Mismatches: 16, Indels: 24
0.74 0.10 0.16
Matches are distributed among these distances:
29 3 0.03
30 8 0.07
31 90 0.80
32 8 0.07
33 4 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:81778830 original size:37 final size:37
Alignment explanation
Indices: 81778743--81778914 Score: 142
Period size: 37 Copynumber: 4.6 Consensus size: 37
81778733 AATCAAAATG
*
81778743 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
81778780 AAAATCAAAATCAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* *
81778817 AGAATCAGTATCAGGTAA-CAGAATCA-G-AATCAGAACC
1 AGAATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATC
* * *
81778854 AGAATTAGAATTAGGTAA-CAGAATCA-G-AATCAGTATC
1 AGAATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATC
81778891 AAGTAA-CAGAATCAGAATCAGAAT
1 -AG-AATCAGAATCAGAATCAGAAT
81778915 GTGAATGCAA
Statistics
Matches: 113, Mismatches: 16, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
36 4 0.04
37 89 0.79
38 16 0.14
39 4 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:81778830 original size:62 final size:62
Alignment explanation
Indices: 81778748--81778910 Score: 263
Period size: 62 Copynumber: 2.6 Consensus size: 62
81778738 AAATGAGAAT
* * * *
81778748 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAA
* *
81778810 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAA
*
81778872 CAGAATCAGAATCAGTATCAAGTAACAGAATCAGAATCA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA
81778911 GAATGTGAAT
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 94 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAA
Found at i:81779179 original size:27 final size:26
Alignment explanation
Indices: 81779131--81779182 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
81779121 GCGAGGCTGC
*
81779131 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
81779157 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
81779183 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:81779494 original size:27 final size:27
Alignment explanation
Indices: 81779423--81779691 Score: 299
Period size: 27 Copynumber: 10.0 Consensus size: 27
81779413 CCTACCATTT
* * *
81779423 TACCCCACAAGGGTATCTCGATAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
81779450 TA-CCT-CACAGGAGTATTTCAGTAATTC
1 TACCCTACA-AGG-GTATTTCGGTAATTC
* * * * *
81779477 TACCCTATAGGGGCATTTAGGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
81779504 TACCCTACAAGGGTATTTTGGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* * **
81779531 TACCTTACAGGGGTATTTTAGTAATTC
1 TACCCTACAAGGGTATTTCGGTAATTC
*
81779558 TACCCTACAAGGGTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* ** *
81779585 TACCCTACAGGGGTATTTCGACATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* *
81779612 TACCCTACAGGGGTATTTCGGTATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
* *
81779639 TACCCTACAAGGGTATTTCGGCATTTC
1 TACCCTACAAGGGTATTTCGGTAATTC
81779666 TACCCTACAAGGGTATTTCGGTAATT
1 TACCCTACAAGGGTATTTCGGTAATT
81779692 TTGTAAATCG
Statistics
Matches: 206, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
25 2 0.01
26 5 0.02
27 193 0.94
28 5 0.02
29 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.35
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGGTAATTC
Found at i:81779558 original size:81 final size:81
Alignment explanation
Indices: 81779419--81779691 Score: 368
Period size: 81 Copynumber: 3.4 Consensus size: 81
81779409 AACACCTACC
* * * *
81779419 ATTT-TACCCCACAAGGGTATCTCGATAATTCTACCTCACAGGAGTATTTCAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCT
* * * *
81779483 ATAGGGGCATTTAGGT
66 ACAAGGGTATTTCGGT
* * *
81779499 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCT
81779564 ACAAGGGTATTTCGGT
66 ACAAGGGTATTTCGGT
* * * * * *
81779580 ATTTCTACCCTACAGGGGTATTTCGACATTTCTACCCTACAGGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCT
*
81779645 ACAAGGGTATTTCGGC
66 ACAAGGGTATTTCGGT
*
81779661 ATTTCTACCCTACAAGGGTATTTCGGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGATAATT
81779692 TTGTAAATCG
Statistics
Matches: 167, Mismatches: 25, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
80 4 0.02
81 163 0.98
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (81 bp):
ATTTCTACCCTACAAGGGTATTTCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCT
ACAAGGGTATTTCGGT
Found at i:81779705 original size:27 final size:27
Alignment explanation
Indices: 81779686--81779842 Score: 215
Period size: 27 Copynumber: 5.8 Consensus size: 27
81779676 GGGTATTTCG
*
81779686 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* * *
81779713 GTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
81779740 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
81779767 GTAATTCTGTAAATCAAGGGTAAAAAA
1 GTAATTCTGTAAATCGAGGGTAAAACA
* *
81779794 GTAATTCTGTAAATCGAGTGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACA
*
81779821 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
81779843 CTTTGGTAAT
Statistics
Matches: 111, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 111 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACA
Found at i:81779760 original size:81 final size:81
Alignment explanation
Indices: 81779675--81779869 Score: 230
Period size: 81 Copynumber: 2.4 Consensus size: 81
81779665 CTACCCTACA
* *
81779675 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
1 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTATAAATCAAGGGTAAAACA
* *
81779740 GTAATTTTGTAAATCG
66 GTAATTCTATAAATCG
*** * * * * * *
81779756 AGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAAAGTAATTCTGTAAATCGAGTGTAAAACG
1 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTATAAATCAAGGGTAAAACA
81779821 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
** *
81779837 AGGGTACTTT-GGTAATTTTACAAGTCGAGGGTA
1 AGGGTA-TTTCGGTAATTTTGTAAATCGAGGGTA
81779870 TTTCAATAAT
Statistics
Matches: 92, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
81 92 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.31
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAAAAGTAATTCTATAAATCAAGGGTAAAACA
GTAATTCTATAAATCG
Found at i:81779853 original size:54 final size:54
Alignment explanation
Indices: 81779686--81779842 Score: 260
Period size: 54 Copynumber: 2.9 Consensus size: 54
81779676 GGGTATTTCG
*
81779686 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATA
* *
81779740 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAAA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATA
* * *
81779794 GTAATTCTGTAAATCGAGTGTAAAACGGTAATTCTATAAATCGAGGGTA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTA
81779843 CTTTGGTAAT
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 96 1.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.29
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATA
Found at i:81779865 original size:54 final size:54
Alignment explanation
Indices: 81779686--81779869 Score: 233
Period size: 54 Copynumber: 3.4 Consensus size: 54
81779676 GGGTATTTCG
* *
81779686 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATA
* * *
81779740 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAAAA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATA
* * * * *** *
81779794 GTAATTCTGTAAATCGAGTGTAAAACGGTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATA
* *
81779848 GTAATTTTACAAGTCGAGGGTA
1 GTAATTTTATAAATCGAGGGTA
81779870 TTTCAATAAT
Statistics
Matches: 113, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 113 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (54 bp):
GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCAAGGGTAAAATA
Found at i:81779879 original size:27 final size:27
Alignment explanation
Indices: 81779849--81779913 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
81779839 GGTACTTTGG
*
81779849 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTAGTTCAA
* *
81779876 TAATTTTACAGGTCGAGGGTAGTTCAG
1 TAATTTTACAAGTCGAGGGTAGTTCAA
*
81779903 TAATTTCACAA
1 TAATTTTACAA
81779914 ATTAGGGGCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.35
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTAGTTCAA
Found at i:81779940 original size:27 final size:27
Alignment explanation
Indices: 81779902--81780070 Score: 230
Period size: 27 Copynumber: 6.3 Consensus size: 27
81779892 GGGTAGTTCA
* * *
81779902 GTAATTTCACAAATTAGGGGCATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
*
81779929 GTAGTTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
*
81779956 ATAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
*
81779983 GTAATTTTACAAACTAAGGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
* * * *
81780010 GTAATTTTATAAACCAAGGGTATTTTA
1 GTAATTTTACAAACTAGGGGTATTTTG
* *
81780037 GTAATTTTACAAACCAGAGGTATTTTG
1 GTAATTTTACAAACTAGGGGTATTTTG
81780064 GTAATTT
1 GTAATTT
81780071 GGTAAAGTAA
Statistics
Matches: 127, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 127 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACTAGGGGTATTTTG
Found at i:81780059 original size:81 final size:81
Alignment explanation
Indices: 81779844--81780070 Score: 233
Period size: 81 Copynumber: 2.8 Consensus size: 81
81779834 TCGAGGGTAC
** * ** *** * **
81779844 TTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTC-GAGGGTAGTTCAGTAATT
1 TTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACCAGA-GGTATTTTGGTAATT
* *
81779908 TCACAAATTAGGGGCAT
65 TCACAAACTAAGGGCAT
* * * * *
81779925 TTTGGTAGTTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTT
1 TTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACCAGAGGTATTTTGGTAATTT
* *
81779990 TACAAACTAAGGGTAT
66 CACAAACTAAGGGCAT
*
81780006 TTTGGTAATTTTATAAACCAAGGGTATTTT-AGTAATTTTACAAACCAGAGGTATTTTGGTAATT
1 TTTGGTAATTTTACAAACCAAGGGTATTTTGA-TAATTTTACAAACCAGAGGTATTTTGGTAATT
81780070 T
65 T
81780071 GGTAAAGTAA
Statistics
Matches: 118, Mismatches: 26, Indels: 4
0.80 0.18 0.03
Matches are distributed among these distances:
80 1 0.01
81 116 0.98
82 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
TTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTACAAACCAGAGGTATTTTGGTAATTT
CACAAACTAAGGGCAT
Found at i:81782254 original size:6 final size:6
Alignment explanation
Indices: 81782224--81782416 Score: 155
Period size: 6 Copynumber: 31.3 Consensus size: 6
81782214 AAGAAACATT
* *
81782224 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * *
81782271 GTGACAGA ATCAAA ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAGA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * *
81782322 ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
*
81782373 A-CAGA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
81782417 GTGAATGCAA
Statistics
Matches: 152, Mismatches: 18, Indels: 34
0.75 0.09 0.17
Matches are distributed among these distances:
5 10 0.07
6 121 0.80
7 14 0.09
8 7 0.05
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:81782281 original size:25 final size:24
Alignment explanation
Indices: 81782224--81782416 Score: 155
Period size: 25 Copynumber: 7.8 Consensus size: 24
81782214 AAGAAACATT
* *
81782224 ATCAGAA-CTAGAATCAAAATGAGA
1 ATCAGAATC-AGAATCAGAATCAGA
81782248 ATCAGAATCAGAATCAGAATCAG-
1 ATCAGAATCAGAATCAGAATCAGA
* * *
81782271 GTGACAGAATCAAAATCAAAATCAGA
1 AT--CAGAATCAGAATCAGAATCAGA
*
81782297 ATCAGAATTAGGTAA-CAGAATCAGA
1 ATCAGAATCA-G-AATCAGAATCAGA
*
81782322 ATCAGTATCAGGTAA-CAGAATCAGA
1 ATCAGAATCA-G-AATCAGAATCAGA
* *
81782347 ATCAGAACCAGAATCAGAATTAGGTA
1 ATCAGAATCAGAATCAGAATCA-G-A
*
81782373 A-CAGAATCAGAATCAGTATCAGGTA
1 ATCAGAATCAGAATCAGAATCA-G-A
81782398 A-CAGAATCAGAATCAGAAT
1 ATCAGAATCAGAATCAGAAT
81782417 GTGAATGCAA
Statistics
Matches: 142, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
23 3 0.02
24 34 0.24
25 100 0.70
26 5 0.04
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (24 bp):
ATCAGAATCAGAATCAGAATCAGA
Found at i:81782332 original size:37 final size:37
Alignment explanation
Indices: 81782245--81782416 Score: 151
Period size: 37 Copynumber: 4.6 Consensus size: 37
81782235 AATCAAAATG
*
81782245 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* * *
81782282 AAAATCAAAATCAGAATCAGAATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
* *
81782319 AGAATCAGTATCAGGTAA-CAGAATCA-G-AATCAGAACC
1 AGAATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATC
* *
81782356 AGAATCAGAATTAGGTAA-CAGAATCA-G-AATCAGTATC
1 AGAATCAGAATCA-G-AATCAGAATCAGGTAA-CAGAATC
81782393 AGGTAA-CAGAATCAGAATCAGAAT
1 A-G-AATCAGAATCAGAATCAGAAT
81782417 GTGAATGCAA
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
36 4 0.03
37 91 0.79
38 16 0.14
39 4 0.03
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAACAGAATC
Found at i:81782332 original size:62 final size:62
Alignment explanation
Indices: 81782250--81782412 Score: 281
Period size: 62 Copynumber: 2.6 Consensus size: 62
81782240 AAATGAGAAT
* * * *
81782250 CAGAATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAA
*
81782312 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAA
81782374 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA
1 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCA
81782413 GAATGTGAAT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 96 1.00
ACGTcount: A:0.48, C:0.16, G:0.18, T:0.18
Consensus pattern (62 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAAAACCAGAATCAGAATTAGGTAA
Found at i:81782407 original size:19 final size:19
Alignment explanation
Indices: 81782256--81782388 Score: 121
Period size: 19 Copynumber: 6.8 Consensus size: 19
81782246 GAATCAGAAT
*
81782256 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTAA
* *
81782275 CAGAATCAAAATCA--AAA
1 CAGAATCAGAATCAGGTAA
*
81782292 TCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
81782312 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAG----A--ATCAGGTAA
81782337 CAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGGTAA
*
81782354 CCAGAATCAGAATTAGGTAA
1 -CAGAATCAGAATCAGGTAA
81782374 CAGAATCAGAATCAG
1 CAGAATCAGAATCAG
81782389 TATCAGGTAA
Statistics
Matches: 93, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
17 3 0.03
18 26 0.28
19 41 0.44
20 4 0.04
21 1 0.01
23 1 0.01
25 17 0.18
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTAA
Found at i:81782610 original size:29 final size:27
Alignment explanation
Indices: 81782538--81782616 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
81782528 AGGCTGCCAG
* *
81782538 ATATTGTGACGAAGTCACCAGATACAA
1 ATATTGTGGCGAAGCCACCAGATACAA
* *
81782565 ATATTGTGGCTAGGCCACCAGA-ACATA
1 ATATTGTGGCGAAGCCACCAGATACA-A
81782592 TATATATGTGGCGAAGCCACCAGAT
1 -ATAT-TGTGGCGAAGCCACCAGAT
81782617 TGCAGCGAGG
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
26 3 0.07
27 19 0.45
28 4 0.10
29 16 0.38
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
ATATTGTGGCGAAGCCACCAGATACAA
Found at i:81782964 original size:27 final size:27
Alignment explanation
Indices: 81782922--81783163 Score: 277
Period size: 27 Copynumber: 9.0 Consensus size: 27
81782912 CCTACCATTT
* * * *
81782922 TACCCCACAAGGGTATCTCGATAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* * *
81782949 TACCTTACAGGAGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* * * *
81782976 TACCCTATAGGGGCATTTAGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
81783003 TACCCTACAAGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* **
81783030 TACCCTATAGGGGTATTTTAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
81783057 TACCCTACAGGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
81783084 TACCCTACAGGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* * * **
81783111 TACCCTATAAGGGTATTTCGATGTTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
81783138 TACCCTACAAGGGTATTTCGGTAATT
1 TACCCTACAGGGGTATTTCGGTAATT
81783164 TTGTAAATCG
Statistics
Matches: 180, Mismatches: 35, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 180 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATTC
Found at i:81783177 original size:27 final size:27
Alignment explanation
Indices: 81783147--81783517 Score: 128
Period size: 27 Copynumber: 13.7 Consensus size: 27
81783137 CTACCCTACA
*
81783147 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
*** * *
81783174 AGGGTAAAACAGTAATTCTATAAATC-
1 AGGGTATTTCGGTAATTTTATAAATCG
* ** * *
81783200 ATTGGTAAAAT-AGTAATTTTGTAAATCG
1 A-GGGT-ATTTCGGTAATTTTATAAATCG
*** ***
81783228 AGGGTAAAACGGTAATTCGGTAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
** * *
81783255 AGGGTAAAAT-AGTAATTCTATAAATCG
1 AGGGT-ATTTCGGTAATTTTATAAATCG
*** *
81783282 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* *
81783309 AGGGTACTTT-GGTAATTTTACAAGTCG
1 AGGGTA-TTTCGGTAATTTTATAAATCG
* ** * **
81783336 AGAGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *** *
81783363 AGGGTAGTTCAGTAATTTCGCAAAT-T
1 AGGGTATTTCGGTAATTTTATAAATCG
* * *
81783389 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * * *
81783416 AGGGATATTTTGATAATTTTACAAA-CT
1 AGGG-TATTTCGGTAATTTTATAAATCG
* * *
81783443 AGGGGTATTTTGGTAATTTTACAAA-CT
1 A-GGGTATTTCGGTAATTTTATAAATCG
* * *
81783470 AGGGGTATTTTGGTAATTTTATAAACCA
1 A-GGGTATTTCGGTAATTTTATAAATCG
**
81783498 AGGGTATTTTAGTAATTTTA
1 AGGGTATTTCGGTAATTTTA
81783518 CAAACCAGGG
Statistics
Matches: 282, Mismatches: 49, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
26 14 0.05
27 256 0.91
28 12 0.04
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTATAAATCG
Found at i:81783232 original size:81 final size:81
Alignment explanation
Indices: 81783147--81783327 Score: 231
Period size: 81 Copynumber: 2.2 Consensus size: 81
81783137 CTACCCTACA
* *
81783147 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATC-ATTGGTAAAAT
1 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGA-GGGTAAAAC
* *
81783211 AGTAATTTTGTAAATCG
65 AGTAATTCTATAAATCG
*** ** * *
81783228 AGGGTAAAACGGTAATTCGGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
1 AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACA
81783293 GTAATTCTATAAATCG
66 GTAATTCTATAAATCG
81783309 AGGGTACTTT-GGTAATTTT
1 AGGGTA-TTTCGGTAATTTT
81783328 ACAAGTCGAG
Statistics
Matches: 82, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
81 81 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.33
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACA
GTAATTCTATAAATCG
Found at i:81783325 original size:54 final size:54
Alignment explanation
Indices: 81783158--81783314 Score: 244
Period size: 54 Copynumber: 2.9 Consensus size: 54
81783148 GGGTATTTCG
* *
81783158 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATC-ATTGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGA-GGGTAAAATA
**
81783212 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCGGTAAATCGAGGGTAAAATA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
* *
81783266 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
81783315 CTTTGGTAAT
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 93 0.99
55 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.22, T:0.30
Consensus pattern (54 bp):
GTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATA
Found at i:81783406 original size:54 final size:54
Alignment explanation
Indices: 81783361--81783542 Score: 161
Period size: 54 Copynumber: 3.4 Consensus size: 54
81783351 TTTTACAGGT
* *
81783361 CGAGGG-TAGTTCAG-TAATTTCGCAAATTAGGGGTATTTTGGTAATTTTACAAA
1 CGAGGGATA-TTCAGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAA
* ** *
81783414 CTAGGGATATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAA
1 CGAGGGATATTCAGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAA
* * ** * * * * * *
81783468 CTAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAA
1 CGAGGGATATTCAGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAA
* * **
81783522 CCAGGGGTATTTTGATAATTT
1 CGAGGGATATTCAGATAATTT
81783543 GGTAAACTAA
Statistics
Matches: 113, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
53 8 0.07
54 105 0.93
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (54 bp):
CGAGGGATATTCAGATAATTTCACAAACTAGGGGTATTTTGGTAATTTTACAAA
Found at i:81783425 original size:81 final size:81
Alignment explanation
Indices: 81783310--81783530 Score: 223
Period size: 81 Copynumber: 2.7 Consensus size: 81
81783300 TATAAATCGA
* * * * * **
81783310 GGGTACTTTGGTAATTTTAC-AAGTCGAGAGTATTTCAATAATTTTACAGGTCGA-GGGTAGTTC
1 GGGTATTTTGGTAATTTTACAAACTAGGGA-TATTTTAATAATTTTACA-AACGAGGGGTAGTTC
* *
81783373 AGTAATTTCGCAAATTAG
64 AGTAATTTCACAAACTAG
* * * **
81783391 GGGTATTTTGGTAATTTTACAAACTAGGGATATTTTGATAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACTAGGGATATTTTAATAATTTTACAAACGAGGGGTAGTTCAG
*
81783456 TAATTTTACAAACTAG
66 TAATTTCACAAACTAG
* * * *
81783472 GGGTATTTTGGTAATTTTATAAACCAAGGG-TATTTTAGTAATTTTACAAACCAGGGGTA
1 GGGTATTTTGGTAATTTTACAAA-CTAGGGATATTTTAATAATTTTACAAACGAGGGGTA
81783531 TTTTGATAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
80 2 0.02
81 104 0.89
82 11 0.09
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGATATTTTAATAATTTTACAAACGAGGGGTAGTTCAG
TAATTTCACAAACTAG
Found at i:81783522 original size:27 final size:27
Alignment explanation
Indices: 81783389--81783542 Score: 227
Period size: 27 Copynumber: 5.7 Consensus size: 27
81783379 TTCGCAAATT
*
81783389 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
* * *
81783416 AGGGATATTTTGATAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
*
81783443 AGGGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTTTACAAACC
*
81783470 AGGGGTATTTTGGTAATTTTATAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
* *
81783497 AAGGGTATTTTAGTAATTTTACAAACC
1 AGGGGTATTTTGGTAATTTTACAAACC
*
81783524 AGGGGTATTTTGATAATTT
1 AGGGGTATTTTGGTAATTT
81783543 GGTAAACTAA
Statistics
Matches: 115, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTTTACAAACC
Found at i:81783736 original size:17 final size:18
Alignment explanation
Indices: 81783714--81783747 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
81783704 AACTTATCTA
81783714 ATTGGGCCCGTA-GGCCT
1 ATTGGGCCCGTATGGCCT
81783731 ATTGGGCCCGTATGGCC
1 ATTGGGCCCGTATGGCC
81783748 CTTTTCGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.12, C:0.29, G:0.35, T:0.24
Consensus pattern (18 bp):
ATTGGGCCCGTATGGCCT
Found at i:81784949 original size:27 final size:27
Alignment explanation
Indices: 81784919--81784996 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
81784909 CTCATATCTC
*
81784919 TAGGCTAGTATTACTGAAATACCCCTG
1 TAGGCTAGAATTACTGAAATACCCCTG
* * * *
81784946 TAGGGTAGAATTACTGTAATGCCCCTAC
1 TAGGCTAGAATTACTGAAATACCCCT-G
* *
81784974 AAGG-TAGAATTACTAAAATACCC
1 TAGGCTAGAATTACTGAAATACCC
81784997 TTGGTTTACA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
27 38 0.93
28 3 0.07
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (27 bp):
TAGGCTAGAATTACTGAAATACCCCTG
Found at i:81785011 original size:27 final size:27
Alignment explanation
Indices: 81784981--81785276 Score: 206
Period size: 27 Copynumber: 10.9 Consensus size: 27
81784971 TACAAGGTAG
* * *
81784981 AATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGCAA
***
81785008 AATTACCAAAATACCCTTGATTAATAA
1 AATTACCAAAATACCCTTGATTTGCAA
* **
81785035 AATTACCAAAATACCCCT-AGTTTTTAA
1 AATTACCAAAATACCCTTGA-TTTGCAA
**
81785062 AATTACCAAAATACCCTTGATTTGTGA
1 AATTACCAAAATACCCTTGATTTGCAA
* *
81785089 AATTA-CAGAAATACCCTCGATTTGTAA
1 AATTACCA-AAATACCCTTGATTTGCAA
* * *
81785116 AATTACCAAAATACCCCCTAATTTGGAA
1 AATTACCAAAATA-CCCTTGATTTGCAA
* * * *
81785144 AGTTATCGAAATACCCTTGATTTGGAA
1 AATTACCAAAATACCCTTGATTTGCAA
** * *
81785171 AATTAAAAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTGATTTGCAA
**
81785198 AATT-GTAGAAATACCCTTGACTTT-CAAA
1 AATTACCA-AAATACCCTTGA-TTTGC-AA
* * *
81785226 AATTA-CAGAAATTCCATTGGTTTGCAA
1 AATTACCA-AAATACCCTTGATTTGCAA
* * *
81785253 AGTTATCAAAATACCCTTGGTTTG
1 AATTACCAAAATACCCTTGATTTG
81785277 TAGATTTACC
Statistics
Matches: 220, Mismatches: 38, Indels: 22
0.79 0.14 0.08
Matches are distributed among these distances:
26 4 0.02
27 170 0.77
28 46 0.21
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGCAA
Found at i:81785215 original size:54 final size:55
Alignment explanation
Indices: 81785088--81785217 Score: 154
Period size: 55 Copynumber: 2.4 Consensus size: 55
81785078 TTGATTTGTG
* * * ** **
81785088 AAATTACAGAAATACCCTCGATTTGTAAAATTACCAAAATACCCCCTAATTTGGA
1 AAATTATAGAAATACCCTTGATTTGGAAAATTAAAAAAATACCCCCTAATTTACA
* * *
81785143 AAGTTATCGAAATACCCTTGATTTGGAAAATTAAAAAAATA-CCCCTGATTTACA
1 AAATTATAGAAATACCCTTGATTTGGAAAATTAAAAAAATACCCCCTAATTTACA
*
81785197 AAATTGTAGAAATACCCTTGA
1 AAATTATAGAAATACCCTTGA
81785218 CTTTCAAAAA
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
54 28 0.45
55 34 0.55
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.28
Consensus pattern (55 bp):
AAATTATAGAAATACCCTTGATTTGGAAAATTAAAAAAATACCCCCTAATTTACA
Found at i:81785600 original size:41 final size:41
Alignment explanation
Indices: 81785540--81785656 Score: 173
Period size: 41 Copynumber: 2.9 Consensus size: 41
81785530 GAAGAAATTG
*
81785540 AGGATCGCATGGTTGCTTGACGACCGTGGATCCAGCAG-TTA
1 AGGATCGCATGGTTACTTGACGACCGTGGATCCA-CAGATTA
* *
81785581 AGGATCGCATAGTTACTTGACGACCGTGGATCCACCGATTA
1 AGGATCGCATGGTTACTTGACGACCGTGGATCCACAGATTA
* *
81785622 CGGATCACATGGTTACTTGACGACCGTGGATCCAC
1 AGGATCGCATGGTTACTTGACGACCGTGGATCCAC
81785657 TGGTGGCTTT
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
40 2 0.03
41 67 0.97
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (41 bp):
AGGATCGCATGGTTACTTGACGACCGTGGATCCACAGATTA
Found at i:81785852 original size:22 final size:22
Alignment explanation
Indices: 81785800--81785864 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
81785790 GCCAATTATT
* * *
81785800 CTGATTATAGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
81785822 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
81785844 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
81785865 ATGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:81787422 original size:46 final size:43
Alignment explanation
Indices: 81787279--81787414 Score: 123
Period size: 47 Copynumber: 3.0 Consensus size: 43
81787269 CCCGCCCCTA
81787279 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATTT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCA-TT
* * * * *
81787326 CA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATA
1 -AGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGC-CAACCATT
81787372 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT
81787415 CCTAGTGACA
Statistics
Matches: 73, Mismatches: 10, Indels: 14
0.75 0.10 0.14
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 27 0.37
47 28 0.38
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (43 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATT
Found at i:81789381 original size:15 final size:15
Alignment explanation
Indices: 81789339--81789394 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
81789329 CAAGGAAACC
81789339 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
81789354 -AGATAGAGAAATCCA
1 GA-ATAAAGAAATCCA
*
81789369 GAATAAAGGAATCCA
1 GAATAAAGAAATCCA
81789384 GAATAAAGAAA
1 GAATAAAGAAA
81789395 CCTAAGATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
14 1 0.03
15 33 0.94
16 1 0.03
ACGTcount: A:0.59, C:0.11, G:0.18, T:0.12
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:81802057 original size:131 final size:131
Alignment explanation
Indices: 81801791--81802146 Score: 358
Period size: 131 Copynumber: 2.7 Consensus size: 131
81801781 TTAATTTGTT
* * * ** * *
81801791 TATCATGAACAACCTTTTTTGAGTTA-CTTGATTTTCTATCGCTACTCCAAATAGCTCGCTGATT
1 TATCATGAACAATCTTTTATGAGTTAGC-TAATTCACTATTGCTACTCCAAACAGCTCGCTGATT
* * * * * * * *
81801855 TAAGATTACAATTGATATTATTGAGGCTCACTAATTTACGATCATAGCCAAAGTCCATTTGATTT
65 TAAGATCACAACTAATATTATTAAGGCTCGCTAATTTACGATCACAACCAAAGTCCATTTGAATT
*
81801920 AC
130 AA
* * * *
81801922 TATCATGAATAAT-TTTCTCTGAGTTAGCTGATTCACTATTGTTACTCCAAACAGCTCGCTGATT
1 TATCATGAACAATCTTT-TATGAGTTAGCTAATTCACTATTGCTACTCCAAACAGCTCGCTGATT
* * * ** *
81801986 TAAGATCACAACTAATATTATTAAGGCTCGCTGATTT-CCAGTCACAACCTAAGTTTATTTTAAT
65 TAAGATCACAACTAATATTATTAAGGCTCGCTAATTTACGA-TCACAACCAAAGTCCATTTGAAT
81802050 TAA
129 TAA
** * * **
81802053 TATCATGAACAATCTTTTATGAGTTAGCTAATTTTCTATTGCTATTCCGAACAGCTCATTGATTT
1 TATCATGAACAATCTTTTATGAGTTAGCTAATTCACTATTGCTACTCCAAACAGCTCGCTGATTT
* *
81802118 AAGTTCACAACTAGTATTATTAAGGCTCG
66 AAGATCACAACTAATATTATTAAGGCTCG
81802147 TCGATTTATC
Statistics
Matches: 186, Mismatches: 35, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
130 5 0.03
131 177 0.95
132 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (131 bp):
TATCATGAACAATCTTTTATGAGTTAGCTAATTCACTATTGCTACTCCAAACAGCTCGCTGATTT
AAGATCACAACTAATATTATTAAGGCTCGCTAATTTACGATCACAACCAAAGTCCATTTGAATTA
A
Found at i:81810585 original size:20 final size:20
Alignment explanation
Indices: 81810549--81810599 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
81810539 AGGCTAAGAA
81810549 ATTATTTTTAT-TATTTTAAT
1 ATTA-TTTTATGTATTTTAAT
* *
81810569 ATTATTTTATGTGTTTTAGT
1 ATTATTTTATGTATTTTAAT
*
81810589 ATGATTTTATG
1 ATTATTTTATG
81810600 AGTGCATGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (20 bp):
ATTATTTTATGTATTTTAAT
Found at i:81817287 original size:43 final size:43
Alignment explanation
Indices: 81817164--81817290 Score: 141
Period size: 43 Copynumber: 3.0 Consensus size: 43
81817154 AAGTCTGAAC
* * * *
81817164 TCAT-TCACCAGCATT-TCGCCTGCTAGGCTTGAAGCCCAATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * * *
81817205 TCATTTCACCGGCATTATAGTCTACTAGGCCCGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * *
81817248 TTATCTCATCGGCATTATAGCCTGCCAGGCTCGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
81817291 ATATTATTCA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
41 4 0.06
42 10 0.14
43 56 0.80
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (43 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
Found at i:81819025 original size:14 final size:15
Alignment explanation
Indices: 81818996--81819025 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81818986 AAAAATTTAG
81818996 ACATGATACTTTCAC
1 ACATGATACTTTCAC
81819011 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
81819025 A
1 A
81819026 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:81822094 original size:58 final size:57
Alignment explanation
Indices: 81822006--81822155 Score: 144
Period size: 57 Copynumber: 2.6 Consensus size: 57
81821996 ATTGACCTCA
* *
81822006 TTACAAATAA-GATTTAGCCCGGA-TGGGTAATCCTGATGTAATCCC-TCTCGAGCATATG
1 TTACAAA-AAGGATTTAGCCTGGACT-GGTAATCCTGAT-TAAGCCCTTCT-GAGCATATG
* ** * * * * *
81822064 TTTCAATTAGGGTTTAGCTTGGACTGGTAATCCTAATTGAGCTCTTCTGAGCATATG
1 TTACAAAAAGGATTTAGCCTGGACTGGTAATCCTGATTAAGCCCTTCTGAGCATATG
*
81822121 TTACAAAAAGGATTTAGCCTGGACTTGTAATCCTG
1 TTACAAAAAGGATTTAGCCTGGACTGGTAATCCTG
81822156 TAATTATAAT
Statistics
Matches: 72, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
57 42 0.58
58 29 0.40
59 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (57 bp):
TTACAAAAAGGATTTAGCCTGGACTGGTAATCCTGATTAAGCCCTTCTGAGCATATG
Found at i:81825187 original size:46 final size:45
Alignment explanation
Indices: 81825131--81825306 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
81825121 TGGTTGAGCA
*
81825131 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
81825177 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
81825224 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
81825270 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81825307 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:81825287 original size:93 final size:93
Alignment explanation
Indices: 81825128--81825298 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
81825118 GGATGGTTGA
* *
81825128 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
81825193 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
81825221 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
81825286 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81825299 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:81828263 original size:15 final size:15
Alignment explanation
Indices: 81828220--81828282 Score: 80
Period size: 14 Copynumber: 4.4 Consensus size: 15
81828210 GTATCTTGGG
81828220 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
81828235 -TTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
81828249 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
81828264 TTTCTTTATTC-GG-
1 TTTCTTTATTCTGGA
81828277 TTTCTT
1 TTTCTT
81828283 GTTATCTTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
13 6 0.14
14 18 0.42
15 17 0.40
16 2 0.05
ACGTcount: A:0.11, C:0.16, G:0.13, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:81830702 original size:46 final size:46
Alignment explanation
Indices: 81830652--81830827 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
81830642 TGGTTGAGCA
*
81830652 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
81830698 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
81830745 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
81830791 CCCGAGCTCTTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81830828 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 71 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81830808 original size:93 final size:93
Alignment explanation
Indices: 81830649--81830819 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81830639 GGATGGTTGA
* *
81830649 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
81830714 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
81830742 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCTTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
81830807 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81830820 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:81839042 original size:39 final size:40
Alignment explanation
Indices: 81838921--81839114 Score: 223
Period size: 40 Copynumber: 4.8 Consensus size: 40
81838911 GAATATAGCT
* *
81838921 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
81838961 ACTCACACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
81839001 ACTCGCACTAATGCCTTCGGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
81839040 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* * **
81839080 ACTTAGCACAAAAGCCTTTAGGACTTAGCCCGGAT
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGAT
81839115 ATCATTCGAA
Statistics
Matches: 132, Mismatches: 17, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
38 2 0.02
39 33 0.25
40 68 0.52
41 26 0.20
42 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:81839072 original size:79 final size:80
Alignment explanation
Indices: 81838895--81839116 Score: 220
Period size: 79 Copynumber: 2.8 Consensus size: 80
81838885 GAATCACATA
* * * * *
81838895 CCTTCGGAATTTAA-CCGAATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATA
1 CCTTCGGGACTTAACCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATA
81838958 GTAACTCACACAAATG
65 GTAACTCACACAAATG
* * *
81838974 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACTAATGCCTTCGGG-CTTAGCCCGGA-ATTA
1 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATA-TA
*
81839037 GTAACTCGCACAAATG
65 GTAACTCACACAAATG
** * * * ** *
81839053 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTTAGGACTTAGCCCGGATAT
1 CCTTCGGGA-CTTAACCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACATAGCCCGGATAT
81839117 CATTCGAATA
Statistics
Matches: 118, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
78 4 0.03
79 60 0.51
80 41 0.35
81 12 0.10
82 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTAACTCGCACAAATGCCTTCGGGACATAGCCCGGATATAG
TAACTCACACAAATG
Found at i:81847217 original size:39 final size:39
Alignment explanation
Indices: 81847085--81847277 Score: 201
Period size: 40 Copynumber: 4.8 Consensus size: 39
81847075 GGATATAGCT
* * * *
81847085 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGCA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATT-TAGTA
*
81847125 ACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GATTTAGTA
* *
81847165 ACTCGCACCAATGCCTTCGGG-CTTAGCCCAGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GATTTAGTA
** * *
81847204 ACTCGCACAAATGCCTTC-GGATCTTAGTCTGGATATAGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAG-CCCGATTTAGTA
* *
81847244 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGAT
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGAT
81847278 ATCATTCGAA
Statistics
Matches: 128, Mismatches: 19, Indels: 12
0.81 0.12 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 68 0.53
41 23 0.18
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTTAGTA
Found at i:81851646 original size:39 final size:39
Alignment explanation
Indices: 81851584--81851729 Score: 229
Period size: 39 Copynumber: 3.7 Consensus size: 39
81851574 TGTGTGAGAT
* * *
81851584 TTATATCTGGGCTAAGTCTCGAAGGCATTCGTGCTGATG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
81851623 ATATGTCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
81851662 TTATATCCGGGCTACGTCCTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
81851701 TTATATCCGGGCTAAGTCCCGAAGGCATT
1 TTATATCCGGGCTAAGTCCCGAAGGCATT
81851730 TGTGTTCAAA
Statistics
Matches: 96, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 96 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:81856728 original size:35 final size:35
Alignment explanation
Indices: 81856688--81856756 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
81856678 CACAAACAAC
81856688 AGGCACTGATTCAATTTTCTTATCATTCACTTTCA
1 AGGCACTGATTCAATTTTCTTATCATTCACTTTCA
81856723 AGGCACTGATTCAATTTTCTTATCATTCACTTTC
1 AGGCACTGATTCAATTTTCTTATCATTCACTTTC
81856757 GAGTCTAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (35 bp):
AGGCACTGATTCAATTTTCTTATCATTCACTTTCA
Found at i:81861724 original size:16 final size:16
Alignment explanation
Indices: 81861700--81861733 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81861690 TATTGTTTAG
*
81861700 TTATCTATTTAATTAA
1 TTATCTATTAAATTAA
*
81861716 TTATTTATTAAATTAA
1 TTATCTATTAAATTAA
81861732 TT
1 TT
81861734 CCCACATTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATCTATTAAATTAA
Found at i:81861812 original size:20 final size:21
Alignment explanation
Indices: 81861787--81861830 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
81861777 AATAAAATAT
81861787 AATAAA-ATATTTATAA-TAAA
1 AATAAATATATTTA-AATTAAA
81861807 AATAAATTATATTTAAATTAAA
1 AATAAA-TATATTTAAATTAAA
81861829 AA
1 AA
81861831 AGTTAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
21 2 0.10
22 13 0.62
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AATAAATATATTTAAATTAAA
Found at i:81862474 original size:24 final size:24
Alignment explanation
Indices: 81862459--81862510 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
81862449 AATTAATGTC
*
81862459 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATGCT
*
81862483 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATGCT
81862507 AAAT
1 AAAT
81862511 CTTCTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATGCT
Found at i:81862643 original size:29 final size:29
Alignment explanation
Indices: 81862601--81862659 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
81862591 TCCACCTTGA
* *
81862601 CACGAATTCTCAACAAACAAGTTCTTCAC
1 CACGAACTCTCAACAAACAAGTTCTCCAC
*
81862630 CACGAACTCTCAACGAACAAGTTCTCCAC
1 CACGAACTCTCAACAAACAAGTTCTCCAC
81862659 C
1 C
81862660 TCTTCCACGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.36, C:0.36, G:0.08, T:0.20
Consensus pattern (29 bp):
CACGAACTCTCAACAAACAAGTTCTCCAC
Found at i:81862828 original size:13 final size:13
Alignment explanation
Indices: 81862810--81862838 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
81862800 ATCACTACAA
81862810 GCAATAATATCAT
1 GCAATAATATCAT
81862823 GCAATAATATCAT
1 GCAATAATATCAT
81862836 GCA
1 GCA
81862839 CAAAATGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.17, G:0.10, T:0.28
Consensus pattern (13 bp):
GCAATAATATCAT
Found at i:81864900 original size:43 final size:44
Alignment explanation
Indices: 81864851--81865017 Score: 171
Period size: 43 Copynumber: 3.9 Consensus size: 44
81864841 GGTTATCGAG
* *
81864851 ATGTGATTACATGTAAGACCATGTCTAGGACATTTGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
* * *
81864895 -TGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
* * * * * * *
81864937 ATATGATTTCATGTAAGACCCTGTATGGGATAGTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
* * *
81864980 ATGTGATAACATGTAAGACCATATCTAGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCAT
81865018 TGTACGAGTT
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
42 7 0.07
43 95 0.93
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.34
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTAGGACATTGGCATCGTAT
Found at i:81869207 original size:20 final size:20
Alignment explanation
Indices: 81869182--81869221 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
81869172 GTTTATTGAC
81869182 AATGATTATGCATATTGAGG
1 AATGATTATGCATATTGAGG
*
81869202 AATGATTATGCGTATTGAGG
1 AATGATTATGCATATTGAGG
81869222 TACTCAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.28, T:0.35
Consensus pattern (20 bp):
AATGATTATGCATATTGAGG
Found at i:81869510 original size:21 final size:21
Alignment explanation
Indices: 81869463--81869504 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
81869453 AAGAAGTTGA
81869463 TAATTTGTTATATTATATATG
1 TAATTTGTTATATTATATATG
*
81869484 TAATTTGTTTTTATTATATAT
1 TAATTTG-TTATATTATATAT
81869505 TGATTTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (21 bp):
TAATTTGTTATATTATATATG
Found at i:81869517 original size:22 final size:23
Alignment explanation
Indices: 81869468--81869518 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
81869458 GTTGATAATT
* *
81869468 TGTTATATTATATATGTAATTTG
1 TGTTTTATTATATATGTAATTTA
*
81869491 T-TTTTATTATATAT-TGATTTA
1 TGTTTTATTATATATGTAATTTA
81869512 TGTTTTA
1 TGTTTTA
81869519 AACTATCTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 6 0.25
22 17 0.71
23 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (23 bp):
TGTTTTATTATATATGTAATTTA
Found at i:81877552 original size:21 final size:21
Alignment explanation
Indices: 81877505--81877546 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
81877495 AAGAAGTTGA
81877505 TAATTTGTTATATTATATATG
1 TAATTTGTTATATTATATATG
*
81877526 TAATTTGTTTTTATTATATAT
1 TAATTTG-TTATATTATATAT
81877547 TGATTTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (21 bp):
TAATTTGTTATATTATATATG
Found at i:81877559 original size:22 final size:23
Alignment explanation
Indices: 81877510--81877560 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
81877500 GTTGATAATT
* *
81877510 TGTTATATTATATATGTAATTTG
1 TGTTTTATTATATATGTAATTTA
*
81877533 T-TTTTATTATATAT-TGATTTA
1 TGTTTTATTATATATGTAATTTA
81877554 TGTTTTA
1 TGTTTTA
81877561 AAATATGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 6 0.25
22 17 0.71
23 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (23 bp):
TGTTTTATTATATATGTAATTTA
Found at i:81878200 original size:19 final size:18
Alignment explanation
Indices: 81878176--81878219 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
81878166 GTTTAGAACA
81878176 TTCATTT-ATCAATAATCAT
1 TTCATTTAATCAATAA-C-T
81878195 TTCATTTCAATCAATAACT
1 TTCATTT-AATCAATAACT
81878214 TTCATT
1 TTCATT
81878220 CATATTCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 14 0.61
20 1 0.04
21 8 0.35
ACGTcount: A:0.34, C:0.18, G:0.00, T:0.48
Consensus pattern (18 bp):
TTCATTTAATCAATAACT
Found at i:81879642 original size:22 final size:23
Alignment explanation
Indices: 81879579--81879701 Score: 117
Period size: 23 Copynumber: 5.3 Consensus size: 23
81879569 AGATTCTCCT
*
81879579 GAGCTGATAACAGTAAGCTCTATT
1 GAGCTGA-AACAGTAAGCTCTATC
* *
81879603 GAGATGAAACGGTAAGCTCTATC
1 GAGCTGAAACAGTAAGCTCTATC
81879626 GAGCTG-AACAGTAAGCTC-ATAC
1 GAGCTGAAACAGTAAGCTCTAT-C
*
81879648 GAGCTGAAATAGTAAGCTCTAAT-
1 GAGCTGAAACAGTAAGCTCT-ATC
* * * *
81879671 GAGCTAAAAATAGTAATCTCTTTC
1 GAGCT-GAAACAGTAAGCTCTATC
81879695 GAGCTGA
1 GAGCTGA
81879702 TATATCGGTA
Statistics
Matches: 83, Mismatches: 10, Indels: 13
0.78 0.09 0.12
Matches are distributed among these distances:
21 2 0.02
22 18 0.22
23 37 0.45
24 24 0.29
25 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (23 bp):
GAGCTGAAACAGTAAGCTCTATC
Found at i:81879675 original size:45 final size:45
Alignment explanation
Indices: 81879578--81879675 Score: 110
Period size: 45 Copynumber: 2.1 Consensus size: 45
81879568 AAGATTCTCC
* *
81879578 TGAGCTGATAACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTA
1 TGAGCTGA-AACAGTAAGCTCTATCGAGATGAAACAGTAAGCTCTA
* *
81879624 TCGAGCTG-AACAGTAAGCTC-ATACGAGCTGAAATAGTAAGCTCTAA
1 T-GAGCTGAAACAGTAAGCTCTAT-CGAGATGAAACAGTAAGCTCT-A
81879670 TGAGCT
1 TGAGCT
81879676 AAAAATAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
44 2 0.04
45 34 0.76
46 3 0.07
47 6 0.13
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.24
Consensus pattern (45 bp):
TGAGCTGAAACAGTAAGCTCTATCGAGATGAAACAGTAAGCTCTA
Found at i:81879697 original size:69 final size:72
Alignment explanation
Indices: 81879579--81879726 Score: 169
Period size: 69 Copynumber: 2.1 Consensus size: 72
81879569 AGATTCTCCT
* * *
81879579 GAGCTGATAACAGTAAGCTCTATTGAGATGAAACGGTAAGCTCTATCGAGCTG-A-A-CAGTAAG
1 GAGCTGATAACAGTAAGCTCTAATGAGATAAAACAGTAAGCTCTATCGAGCTGAATATCAGTAAG
81879641 CTCATAC
66 CTCATAC
* * * * * *
81879648 GAGCTGA-AATAGTAAGCTCTAATGAGCTAAAAATAGTAATCTCTTTCGAGCTGATATATCGGTA
1 GAGCTGATAACAGTAAGCTCTAATGAGAT-AAAACAGTAAGCTCTATCGAGCTGA-ATATCAGTA
81879712 AGCTCATAC
64 AGCTCATAC
81879721 GAGCTG
1 GAGCTG
81879727 TGGTGAGTCC
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
68 18 0.28
69 26 0.40
71 1 0.02
72 1 0.02
73 19 0.29
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (72 bp):
GAGCTGATAACAGTAAGCTCTAATGAGATAAAACAGTAAGCTCTATCGAGCTGAATATCAGTAAG
CTCATAC
Found at i:81880331 original size:21 final size:22
Alignment explanation
Indices: 81880307--81880352 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
81880297 AATCACTTTA
*
81880307 TAAAACTTGT-AT-ATCTATCAT
1 TAAAACTT-TCATAATCCATCAT
81880328 T-AAACTTTCATAATCCATCAT
1 TAAAACTTTCATAATCCATCAT
81880349 TAAA
1 TAAA
81880353 CATTTAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
19 1 0.05
20 8 0.38
21 10 0.48
22 2 0.10
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.39
Consensus pattern (22 bp):
TAAAACTTTCATAATCCATCAT
Found at i:81883212 original size:27 final size:27
Alignment explanation
Indices: 81883181--81883358 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81883171 TAAATTGTAC
81883181 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81883208 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81883234 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81883262 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81883290 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81883317 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81883344 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81883359 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81883295 original size:82 final size:81
Alignment explanation
Indices: 81883182--81883337 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81883172 AAATTGTACA
* *
81883182 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81883246 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81883263 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81883328 TGCGAGTTGA
65 TGCGAATTGA
81883338 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81883349 original size:82 final size:81
Alignment explanation
Indices: 81883178--81883358 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81883168 GATTAAATTG
* *
81883178 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81883243 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81883259 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81883323 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81883341 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81883359 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81891350 original size:27 final size:27
Alignment explanation
Indices: 81891319--81891496 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
81891309 TAAATTGTAC
81891319 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81891346 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
81891372 ATGCACTAAGTGTGCTAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81891400 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81891428 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81891455 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81891482 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81891497 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81891487 original size:82 final size:81
Alignment explanation
Indices: 81891316--81891496 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
81891306 GATTAAATTG
* *
81891316 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
81891381 GTGTGCTAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81891397 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81891461 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81891479 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81891497 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81892782 original size:40 final size:40
Alignment explanation
Indices: 81892727--81892808 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
81892717 CTCAAGATAT
*
81892727 GATTTTTAAAACGACTAGTACTCAGATTGGGCAGTATCTG
1 GATTTTTAAAACGACTAGTACACAGATTGGGCAGTATCTG
*
81892767 GATTTTTAAAACGACTAGTACACAGATTGGGCAGTGTCTG
1 GATTTTTAAAACGACTAGTACACAGATTGGGCAGTATCTG
81892807 GA
1 GA
81892809 AAATAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (40 bp):
GATTTTTAAAACGACTAGTACACAGATTGGGCAGTATCTG
Found at i:81897228 original size:31 final size:31
Alignment explanation
Indices: 81897185--81897269 Score: 118
Period size: 31 Copynumber: 2.8 Consensus size: 31
81897175 TCAATCTCAG
81897185 CATAT-ACTGGGCCGAAGCCTTTACATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* *
81897215 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTACATTATT
* * *
81897246 CATATCACTAGGCCAAAGCTTTTA
1 CATATCACTGGGCCGAAGCCTTTA
81897270 ATGTAAATGA
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 4 0.09
31 43 0.91
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTACATTATT
Found at i:81897516 original size:25 final size:25
Alignment explanation
Indices: 81897488--81897557 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
81897478 CTCTTTTAAT
81897488 AACTGGGGCAAAGCCCTTTTCGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
81897513 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
81897538 AACTGGGGCAAAACCCTTTT
1 AACTGGGGCAAAGCCCTTTT
81897558 GCACTTCCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:81897621 original size:11 final size:11
Alignment explanation
Indices: 81897605--81897654 Score: 61
Period size: 11 Copynumber: 4.8 Consensus size: 11
81897595 TATATGAATT
81897605 TATCATGTACA
1 TATCATGTACA
81897616 TATCA--TACA
1 TATCATGTACA
*
81897625 TATCATGTGCA
1 TATCATGTACA
81897636 TATCATGT-CA
1 TATCATGTACA
*
81897646 AATCATGTA
1 TATCATGTA
81897655 TATCAAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 9 0.26
10 9 0.26
11 16 0.47
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (11 bp):
TATCATGTACA
Found at i:81901722 original size:22 final size:23
Alignment explanation
Indices: 81901658--81901781 Score: 112
Period size: 23 Copynumber: 5.3 Consensus size: 23
81901648 GAGCTTCTCC
81901658 TGAGCTGATAACAGTAAGCTCTAT
1 TGAGCTGA-AACAGTAAGCTCTAT
**
81901682 TGAGCTGAAATGGTAAGCTCTAT
1 TGAGCTGAAACAGTAAGCTCTAT
81901705 TGAGCTG-AACAGTAAGCTC-AT
1 TGAGCTGAAACAGTAAGCTCTAT
* * *
81901726 ACGAGCTGAAACAATAAGCT-TCAA
1 -TGAGCTGAAACAGTAAGCTCT-AT
* *
81901750 TGAGCTAAAAATAGTAAGCTCT-T
1 TGAGCT-GAAACAGTAAGCTCTAT
81901773 TCGAGCTGA
1 T-GAGCTGA
81901782 TATATCGGTA
Statistics
Matches: 80, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.03
22 16 0.20
23 37 0.46
24 24 0.30
25 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAT
Found at i:81901744 original size:45 final size:46
Alignment explanation
Indices: 81901658--81901781 Score: 119
Period size: 45 Copynumber: 2.7 Consensus size: 46
81901648 GAGCTTCTCC
* ***
81901658 TGAGCTGATAACAGTAAGCTCTATTGAGCTGAAATGGTAAGCTCTAT
1 TGAGCTGA-AACAGTAAGCTCTATCGAGCTGAAACAATAAGCTCTAT
*
81901705 TGAGCTG-AACAGTAAGCTC-ATACGAGCTGAAACAATAAGCT-TCAA
1 TGAGCTGAAACAGTAAGCTCTAT-CGAGCTGAAACAATAAGCTCT-AT
* * *
81901750 TGAGCTAAAAATAGTAAGCTCTTTCGAGCTGA
1 TGAGCT-GAAACAGTAAGCTCTATCGAGCTGA
81901782 TATATCGGTA
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
44 3 0.05
45 34 0.53
47 26 0.41
48 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (46 bp):
TGAGCTGAAACAGTAAGCTCTATCGAGCTGAAACAATAAGCTCTAT
Found at i:81901767 original size:69 final size:72
Alignment explanation
Indices: 81901659--81901806 Score: 173
Period size: 69 Copynumber: 2.1 Consensus size: 72
81901649 AGCTTCTCCT
* * * *
81901659 GAGCTGATAACAGTAAGCTCTATTGAGCTGAAATGGTAAGCTCTATT-GAGCTG-A-A-CAGTAA
1 GAGCTGATAACAATAAGCTCTAATGAGCTAAAATAGTAAGCTCT-TTCGAGCTGAATATCAGTAA
81901720 GCTCATAC
65 GCTCATAC
*
81901728 GAGCTGA-AACAATAAGCT-TCAATGAGCTAAAAATAGTAAGCTCTTTCGAGCTGATATATCGGT
1 GAGCTGATAACAATAAGCTCT-AATGAGCT-AAAATAGTAAGCTCTTTCGAGCTGA-ATATCAGT
81901791 AAGCTCATAC
63 AAGCTCATAC
81901801 GAGCTG
1 GAGCTG
81901807 TGGTGAGTCT
Statistics
Matches: 67, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
67 1 0.01
68 19 0.28
69 26 0.39
71 1 0.01
72 1 0.01
73 19 0.28
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (72 bp):
GAGCTGATAACAATAAGCTCTAATGAGCTAAAATAGTAAGCTCTTTCGAGCTGAATATCAGTAAG
CTCATAC
Found at i:81901957 original size:45 final size:45
Alignment explanation
Indices: 81901893--81901983 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
81901883 CATACATTTC
81901893 AAATAGGGCTCGGTAACATATACATTAAATCATTAAATCATTCAT
1 AAATAGGGCTCGGTAACATATACATTAAATCATTAAATCATTCAT
81901938 AAATAGGGCTCGGTAACATATACATTAAATCATTAAATCATTCAT
1 AAATAGGGCTCGGTAACATATACATTAAATCATTAAATCATTCAT
81901983 A
1 A
81901984 CTTCCAATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (45 bp):
AAATAGGGCTCGGTAACATATACATTAAATCATTAAATCATTCAT
Found at i:81911297 original size:42 final size:42
Alignment explanation
Indices: 81911251--81911372 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 42
81911241 TGGTGTTAAT
* *
81911251 ATGAGATTTCATGTAAGGCCATGTCTGGGACATGGCATCGAA
1 ATGAGATTTCATATAAGACCATGTCTGGGACATGGCATCGAA
* * * * * * *
81911293 ATGAGATTTCGTAAAAGACCATATCTAGGATATGGCATTGAT
1 ATGAGATTTCATATAAGACCATGTCTGGGACATGGCATCGAA
* ** *
81911335 GTGAGATCCCATATAAGACCACGTCTGGGACATGGCAT
1 ATGAGATTTCATATAAGACCATGTCTGGGACATGGCAT
81911373 TGGCATCTTA
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.26
Consensus pattern (42 bp):
ATGAGATTTCATATAAGACCATGTCTGGGACATGGCATCGAA
Found at i:81911373 original size:42 final size:42
Alignment explanation
Indices: 81911222--81911374 Score: 119
Period size: 42 Copynumber: 3.6 Consensus size: 42
81911212 TATTATCATG
* * ** ** *
81911222 TAAGACCATATCTGGGATATGGTGTT-AATATGAGATTTCATG
1 TAAGACCATGTCTGGGACATGGCATTGAA-ATGAGATCCCATA
* * ** *
81911264 TAAGGCCATGTCTGGGACATGGCATCGAAATGAGATTTCGTA
1 TAAGACCATGTCTGGGACATGGCATTGAAATGAGATCCCATA
* * * * **
81911306 AAAGACCATATCTAGGATATGGCATTGATGTGAGATCCCATA
1 TAAGACCATGTCTGGGACATGGCATTGAAATGAGATCCCATA
*
81911348 TAAGACCACGTCTGGGACATGGCATTG
1 TAAGACCATGTCTGGGACATGGCATTG
81911375 GCATCTTATT
Statistics
Matches: 86, Mismatches: 24, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
42 84 0.98
43 2 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGGCATTGAAATGAGATCCCATA
Found at i:81920675 original size:55 final size:53
Alignment explanation
Indices: 81920588--81920842 Score: 225
Period size: 55 Copynumber: 4.8 Consensus size: 53
81920578 ATTAGGGTTT
* *
81920588 AAGGATACCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAAGC
* * ** * *
81920643 AAGGAAATCATGTAAGACCATGTTAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTA-AA-GC
* * * *
81920698 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAAGC
** * *
81920751 AAGGATACCATGTAAGACCATGTTAAGACATGGCAATGGCAAGTTTC--AA--
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAAGC
** * * *
81920800 AAGGATACCACATAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
81920843 GTACTCGCGT
Statistics
Matches: 162, Mismatches: 32, Indels: 18
0.76 0.15 0.08
Matches are distributed among these distances:
49 37 0.23
51 1 0.01
52 4 0.02
53 39 0.24
54 15 0.09
55 62 0.38
56 4 0.02
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAAGC
Found at i:81920795 original size:108 final size:110
Alignment explanation
Indices: 81920595--81920795 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
81920585 TTTAAGGATA
*
81920595 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAAGCAAGGAAATCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAAGCAAGGAAACCATGTAAGA
* *
81920660 CCATGTTAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTTAAGACATGGCAATGACAAGTTACTATAAGGCAAAGGTC
* * * *
81920705 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAAGCAAGGAAACCATGTAAG
*
81920767 ACCATGTTAAGACATGGCAATGGCAAGTT
65 ACCATGTTAAGACATGGCAATGACAAGTT
81920796 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.23
Consensus pattern (110 bp):
CCATATAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAAGCAAGGAAACCATGTAAGA
CCATGTTAAGACATGGCAATGACAAGTTACTATAAGGCAAAGGTC
Found at i:81920937 original size:23 final size:24
Alignment explanation
Indices: 81920911--81920955 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
81920901 AAGGTAAGGT
*
81920911 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
81920934 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
81920956 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:81921054 original size:16 final size:16
Alignment explanation
Indices: 81921033--81921065 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
81921023 AATAAATTTG
81921033 ATTAAGTAAGTAAGTA
1 ATTAAGTAAGTAAGTA
*
81921049 ATTAAGTAAGTGAGTA
1 ATTAAGTAAGTAAGTA
81921065 A
1 A
81921066 GTGAAGAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.30
Consensus pattern (16 bp):
ATTAAGTAAGTAAGTA
Found at i:81924394 original size:6 final size:6
Alignment explanation
Indices: 81924383--81924444 Score: 69
Period size: 6 Copynumber: 11.0 Consensus size: 6
81924373 TGAATCCTCC
*
81924383 TTTATT TTTA-- TTTATT CTTATT TTTA-T TTTA-T TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
81924427 TTTCTT TTAATT TTTATT
1 TTTATT TTTATT TTTATT
81924445 CTCATTTCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
4 4 0.09
5 10 0.21
6 33 0.70
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:81924405 original size:16 final size:16
Alignment explanation
Indices: 81924384--81924432 Score: 75
Period size: 16 Copynumber: 3.1 Consensus size: 16
81924374 GAATCCTCCT
81924384 TTATTTTTATTTATTC
1 TTATTTTTATTTATTC
81924400 TTATTTTTATTTTATT-
1 TTATTTTTA-TTTATTC
81924416 TTATTTTTATTT-TTC
1 TTATTTTTATTTATTC
81924431 TT
1 TT
81924433 TTAATTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
14 2 0.06
15 5 0.16
16 18 0.58
17 6 0.19
ACGTcount: A:0.16, C:0.04, G:0.00, T:0.80
Consensus pattern (16 bp):
TTATTTTTATTTATTC
Found at i:81924411 original size:22 final size:22
Alignment explanation
Indices: 81924383--81924439 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
81924373 TGAATCCTCC
81924383 TTTATTTTTATTTATTCTTATT
1 TTTATTTTTATTTATTCTTATT
*
81924405 TTTA-TTTTATTTTATTTTTATT
1 TTTATTTTTA-TTTATTCTTATT
* *
81924427 TTTCTTTTAATTT
1 TTTATTTTTATTT
81924440 TTATTCTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 5 0.17
22 21 0.70
23 4 0.13
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTATTTTTATTTATTCTTATT
Found at i:81929141 original size:46 final size:46
Alignment explanation
Indices: 81929091--81929215 Score: 214
Period size: 46 Copynumber: 2.7 Consensus size: 46
81929081 TGAGCATCCA
*
81929091 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCG
*
81929137 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCG
* *
81929183 AGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81929216 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCG
Found at i:81934610 original size:46 final size:45
Alignment explanation
Indices: 81934560--81934735 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 45
81934550 TGGTTGAGCA
81934560 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
81934606 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
81934653 TACGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
81934699 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81934736 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:81934725 original size:93 final size:93
Alignment explanation
Indices: 81934557--81934727 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81934547 GGATGGTTGA
* * *
81934557 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81934622 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
81934650 GCATACGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAGT
1 GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81934715 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81934728 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:81939841 original size:58 final size:58
Alignment explanation
Indices: 81939777--81939892 Score: 169
Period size: 58 Copynumber: 2.0 Consensus size: 58
81939767 GTTATCATGT
* * * ** *
81939777 AAGACCATATTTGGGATATGGCGTTGATATGAGATTTCGTGTAAGACCACGTCTGTAA
1 AAGACCATATTTGAGATATGGCATCGATATGAGATCCCATGTAAGACCACGTCTGTAA
*
81939835 AAGACCATATTTGAGATATGGCATCGATGTGAGATCCCATGTAAGACCACGTCTGTAA
1 AAGACCATATTTGAGATATGGCATCGATATGAGATCCCATGTAAGACCACGTCTGTAA
81939893 TAGCCCGATT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.28
Consensus pattern (58 bp):
AAGACCATATTTGAGATATGGCATCGATATGAGATCCCATGTAAGACCACGTCTGTAA
Found at i:81941243 original size:46 final size:49
Alignment explanation
Indices: 81941150--81941461 Score: 237
Period size: 46 Copynumber: 6.6 Consensus size: 49
81941140 TGAGAGCCAT
* * * *
81941150 TGTAATACTATGTCTGGGACATGGCAAT-GGCATTGAGATG-AGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGC-ATCAGCCTTGAGATGTAGAGCTAG
81941198 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCTTGAGATGTA-AGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATGTAGAGCTAG
* * * *
81941244 TGTAAGA-CATGTCTGAGACAT-GCATC-GGCTATGAGATAT-G-TC-AG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCCT-TGAGATGTAGAGCTAG
* * * *
81941288 TGTAAGATCATGTCTGGGACATGGCATCGGCAC-GGATATGTGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGC-CTTGAGATGT-AGAGCTAG
** * * * *
81941338 TGTAAGACCATGTCTGGGACATGGGGTCAGCCTCGA-TTTTGATAG-TCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATGT-AGAGCT-AG
* *
81941387 TGTAAGACCATGTCTGGGACATGGCATC-GACTT--GATGAATGAG-TCAG
1 TGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATGTA-GAGCT-AG
*
81941434 TGTAAGACCATGTCTGGGACATGACATC
1 TGTAAGACCATGTCTGGGACATGGCATC
81941462 GGCATTATAC
Statistics
Matches: 217, Mismatches: 31, Indels: 33
0.77 0.11 0.12
Matches are distributed among these distances:
44 9 0.04
45 19 0.09
46 61 0.28
47 49 0.23
48 12 0.06
49 36 0.17
50 31 0.14
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATGTAGAGCTAG
Done.