Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 242 of 345
Found at i:81941390 original size:99 final size:97
Alignment explanation
Indices: 81941278--81941456 Score: 256
Period size: 99 Copynumber: 1.8 Consensus size: 97
81941268 TCGGCTATGA
* *
81941278 GATATGTCAGTGTAAGATCATGTCTGGGACATGGCATCGGCAC-GGAT-ATGTGAGAGCTAGTGT
1 GATATGTCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTGGATGA-ATGAG-GC-AGTGT
81941341 AAGACCATGTCTGGGACATGGGGTCAGCCTCGATTTT
61 AAGACCATGTCTGGGACATGGGGTCAGCCTCGATTTT
* *
81941378 GATA-GTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGAATGAGTCAGTGTAAGAC
1 GATATGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTGGATGAATGAGGCAGTGTAAGAC
81941442 CATGTCTGGGACATG
66 CATGTCTGGGACATG
81941457 ACATCGGCAT
Statistics
Matches: 73, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
96 25 0.34
97 3 0.04
98 8 0.11
99 33 0.45
100 4 0.05
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (97 bp):
GATATGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTGGATGAATGAGGCAGTGTAAGAC
CATGTCTGGGACATGGGGTCAGCCTCGATTTT
Found at i:81941400 original size:49 final size:47
Alignment explanation
Indices: 81941101--81941462 Score: 214
Period size: 46 Copynumber: 7.7 Consensus size: 47
81941091 ATTTGTGTGC
* * * *
81941101 CAGTGTAAGA-CATGTCTGGGACAT-GCATAGGCCAC-ATTATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCAT-CGCCTCGATT-TGATAGT
* * * * * * ** *
81941147 CATTGTAATACTATGTCTGGGACATGGCAATGGCATTGAGATGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGC-ATCGCCTCGATTTGATAGT
* **
81941194 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCTTGAGATG-TAAG-
1 C-AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGATTTGAT-AGT
* * **
81941240 CTAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCT--ATGAGATATGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGATTTGATA-GT
* * * *
81941285 CAGTGTAAGATCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGCCTC-GAT-T-TGATAGT
**
81941334 CTAGTGTAAGACCATGTCTGGGACATGGGGTCAGCCTCGATTTTGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCGA-TTTGATAGT
* *
81941384 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA--TGAATGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGATTTG-AT-AGT
*
81941431 CAGTGTAAGACCATGTCTGGGACATGACATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
81941463 GCATTATACC
Statistics
Matches: 258, Mismatches: 35, Indels: 45
0.76 0.10 0.13
Matches are distributed among these distances:
43 3 0.01
44 11 0.04
45 21 0.08
46 61 0.24
47 61 0.24
48 23 0.09
49 39 0.15
50 32 0.12
51 7 0.03
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCGATTTGATAGT
Found at i:81944667 original size:46 final size:44
Alignment explanation
Indices: 81944578--81944794 Score: 179
Period size: 46 Copynumber: 4.7 Consensus size: 44
81944568 GGGGTAAGGT
*
81944578 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA
1 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGACTCATCTCGTA
* *
81944624 GCTGATGCATGTCCCAAACATGTCTTACACTGACTTACGTCTCG-A
1 GCTGATGCATGTCCCAGACATGTCTTACACTGAC-T-CATCTCGTA
* * * *
81944669 GGTCGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTC-AA
1 GCT-GATGCATGTCCCAGACATGTCTTACACT-G-ACTCATCTCGTA
* * * * * *
81944715 TGCCGACGCAATGTCCCAGACATGGTTTTACACTGGCTC-TCATAATGTG
1 -GCTGATGC-ATGTCCCAGACAT-GTCTTACACTGACTCATC-T--CGTA
81944764 GCTGATGCATGTCCCAGACATGTCTTACACT
1 GCTGATGCATGTCCCAGACATGTCTTACACT
81944795 AGCTCACACA
Statistics
Matches: 142, Mismatches: 16, Indels: 26
0.77 0.09 0.14
Matches are distributed among these distances:
44 13 0.09
45 18 0.13
46 65 0.46
47 29 0.20
48 17 0.12
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (44 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTGACTCATCTCGTA
Found at i:81950861 original size:72 final size:72
Alignment explanation
Indices: 81950777--81950964 Score: 218
Period size: 72 Copynumber: 2.6 Consensus size: 72
81950767 TATGTAATGT
** *
81950777 GGGTCCGAGTACTAACTTTGTATATAAACCCGTGAGTAACTCGCTGAGCGAGCACAT-CATGTTA
1 GGGTCCGAGTACTAACTTTGTATATAAACCCGTGAGTAACTCAATGAGCGAGCA-ATACATGATA
81950841 ATGCTTTG
65 ATGCTTTG
* * * *
81950849 GGGTCCTG-GTACTAACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGGGCATTACATGATA
1 GGGTCC-GAGTACTAACTTTGTATATAAACCCGTGAGTAACTCAATGAGCGAGCAATACATGATA
81950913 ATGCTTTG
65 ATGCTTTG
* * * * * * *
81950921 GGGTCCGAGTGCTGACTTTGTGTACAGACCTGTGAGTAGCTCAA
1 GGGTCCGAGTACTAACTTTGTATATAAACCCGTGAGTAACTCAA
81950965 ATGCAGGCAT
Statistics
Matches: 101, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
71 2 0.02
72 98 0.97
73 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (72 bp):
GGGTCCGAGTACTAACTTTGTATATAAACCCGTGAGTAACTCAATGAGCGAGCAATACATGATAA
TGCTTTG
Found at i:81957778 original size:72 final size:72
Alignment explanation
Indices: 81957694--81957867 Score: 208
Period size: 72 Copynumber: 2.4 Consensus size: 72
81957684 CTGGGTACTA
* ** *
81957694 ACTTTGTATATAAACCCGTGAGTAACTCGCTGAGCGAGCA-TATCATGTTAATGCTTTGGGGTCC
1 ACTTTGTGTATAAACCCGTGAGTAACTCAATGAGCGAGCATTA-CATGATAATGCTTTGGGGTCC
81957758 TG-GTAATG
65 -GAGTAATG
* *
81957766 ACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGGGCATTACATGATAATGCTTTGGGGTCCG
1 ACTTTGTGTATAAACCCGTGAGTAACTCAATGAGCGAGCATTACATGATAATGCTTTGGGGTCCG
**
81957831 AGTGCTG
66 AGTAATG
* * * *
81957838 ACTTTGTGTACAGACCTGTGAGTAGCTCAA
1 ACTTTGTGTATAAACCCGTGAGTAACTCAA
81957868 ATGCAGGCAT
Statistics
Matches: 89, Mismatches: 11, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
71 1 0.01
72 86 0.97
73 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (72 bp):
ACTTTGTGTATAAACCCGTGAGTAACTCAATGAGCGAGCATTACATGATAATGCTTTGGGGTCCG
AGTAATG
Found at i:81960848 original size:27 final size:26
Alignment explanation
Indices: 81960814--81960866 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 26
81960804 CAATTCTAAC
81960814 AAAATTTATTTTCAAAATTAAAAATT
1 AAAATTTATTTTCAAAATTAAAAATT
*
81960840 AAAACTTTATTTTTAAAATTAAAAATT
1 AAAA-TTTATTTTCAAAATTAAAAATT
81960867 GTTTTGACAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (26 bp):
AAAATTTATTTTCAAAATTAAAAATT
Found at i:81961014 original size:25 final size:25
Alignment explanation
Indices: 81960977--81961034 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
81960967 TGACCCATAA
* *
81960977 ATTATATCCATAACATTATGAATAT
1 ATTATATTCATAACATTATAAATAT
* * * *
81961002 ATTATATTTATAATATTTTAAATTT
1 ATTATATTCATAACATTATAAATAT
81961027 ATTATATT
1 ATTATATT
81961035 GTATTTAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (25 bp):
ATTATATTCATAACATTATAAATAT
Found at i:81961026 original size:16 final size:16
Alignment explanation
Indices: 81960992--81961034 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
81960982 ATCCATAACA
* *
81960992 TTATGAATATATTATAT
1 TTAT-AATATTTTAAAT
81961009 TTATAATATTTTAAAT
1 TTATAATATTTTAAAT
*
81961025 TTATTATATT
1 TTATAATATT
81961035 GTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (16 bp):
TTATAATATTTTAAAT
Found at i:81969682 original size:19 final size:19
Alignment explanation
Indices: 81969653--81969706 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
81969643 AAAATAGTAC
* *
81969653 AACATAATAGTAAAATTGT
1 AACAAAATAGTGAAATTGT
*
81969672 AGCAAAATAGTGAAATTGT
1 AACAAAATAGTGAAATTGT
81969691 AACAAAATAGTGAAAT
1 AACAAAATAGTGAAAT
81969707 AATAACAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.54, C:0.06, G:0.15, T:0.26
Consensus pattern (19 bp):
AACAAAATAGTGAAATTGT
Found at i:81969712 original size:19 final size:19
Alignment explanation
Indices: 81969674--81969714 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
81969664 AAAATTGTAG
**
81969674 CAAAATAGTGAAATTGTAA
1 CAAAATAGTGAAATAATAA
81969693 CAAAATAGTGAAATAATAA
1 CAAAATAGTGAAATAATAA
81969712 CAA
1 CAA
81969715 GAAAATAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.59, C:0.07, G:0.12, T:0.22
Consensus pattern (19 bp):
CAAAATAGTGAAATAATAA
Found at i:81970500 original size:46 final size:46
Alignment explanation
Indices: 81970426--81970520 Score: 154
Period size: 46 Copynumber: 2.1 Consensus size: 46
81970416 TTATAAAGGA
* *
81970426 AATAAAAACCTAATATAATAGAGGAAATAAATAAAACTAAAACTCT
1 AATAAAAACCTAATATAATAAAGAAAATAAATAAAACTAAAACTCT
* *
81970472 AATAAAAATCTAATATAATAAAGAAAATATATAAAACTAAAACTCT
1 AATAAAAACCTAATATAATAAAGAAAATAAATAAAACTAAAACTCT
81970518 AAT
1 AAT
81970521 TGTTGTCGTC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.62, C:0.09, G:0.04, T:0.24
Consensus pattern (46 bp):
AATAAAAACCTAATATAATAAAGAAAATAAATAAAACTAAAACTCT
Found at i:81985028 original size:23 final size:24
Alignment explanation
Indices: 81984932--81985056 Score: 87
Period size: 28 Copynumber: 5.0 Consensus size: 24
81984922 ATACACGGAT
* *
81984932 TCCATCC-AAACACACCAAAAT-G
1 TCCATCCAAAACACACCAGAATAA
* * *
81984954 TCCAACCAAAACATACCAGTATAA
1 TCCATCCAAAACACACCAGAATAA
81984978 TCC-TCCAAAACACACCAGTATCATATAA
1 TCCATCCAAAACACACCAG----A-ATAA
81985006 T-CATCCAAAACACACCAGAATAATATAA
1 TCCATCCAAAACACACCAG----A-ATAA
81985034 TCCATCCAAAACACACCAGAATA
1 TCCATCCAAAACACACCAGAATA
81985057 GCACAAAGTG
Statistics
Matches: 84, Mismatches: 10, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
22 6 0.07
23 24 0.29
24 6 0.07
25 1 0.01
27 1 0.01
28 29 0.35
29 17 0.20
ACGTcount: A:0.48, C:0.31, G:0.04, T:0.17
Consensus pattern (24 bp):
TCCATCCAAAACACACCAGAATAA
Found at i:81985049 original size:29 final size:29
Alignment explanation
Indices: 81984973--81985056 Score: 136
Period size: 28 Copynumber: 3.0 Consensus size: 29
81984963 AACATACCAG
* *
81984973 TATAATCC-TCCAAAACACACCAGTATCA
1 TATAATCCATCCAAAACACACCAGAATAA
81985001 TATAAT-CATCCAAAACACACCAGAATAA
1 TATAATCCATCCAAAACACACCAGAATAA
81985029 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCCATCCAAAACACACCAGAATA
81985057 GCACAAAGTG
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
27 1 0.02
28 30 0.58
29 21 0.40
ACGTcount: A:0.49, C:0.29, G:0.04, T:0.19
Consensus pattern (29 bp):
TATAATCCATCCAAAACACACCAGAATAA
Found at i:81989486 original size:19 final size:19
Alignment explanation
Indices: 81989447--81989486 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
81989437 ACTTTGAAAT
81989447 AGGGCACACGCCCTTGTGGA
1 AGGGCACACGCCC-TGTGGA
81989467 AGGGCAACACGCCC-GTGGA
1 AGGGC-ACACGCCCTGTGGA
81989486 A
1 A
81989487 CATTTCAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.32
20 5 0.26
21 8 0.42
ACGTcount: A:0.25, C:0.30, G:0.35, T:0.10
Consensus pattern (19 bp):
AGGGCACACGCCCTGTGGA
Found at i:82004880 original size:28 final size:28
Alignment explanation
Indices: 82004844--82004910 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
82004834 CGTATGCCTG
*
82004844 GCCCGTGTCCTTCACACGGCCATGACAT
1 GCCCGTGTCCTTCACAAGGCCATGACAT
* *
82004872 GCCTGTGTCCTTCATAAGGCCATGACAT
1 GCCCGTGTCCTTCACAAGGCCATGACAT
82004900 GCCCGTGTCCT
1 GCCCGTGTCCT
82004911 AGCCCGTGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.16, C:0.36, G:0.22, T:0.25
Consensus pattern (28 bp):
GCCCGTGTCCTTCACAAGGCCATGACAT
Found at i:82010748 original size:24 final size:24
Alignment explanation
Indices: 82010721--82010883 Score: 91
Period size: 24 Copynumber: 6.7 Consensus size: 24
82010711 ATCAATCGAT
82010721 TTCGCACACATAGTGCTATTCAAA
1 TTCGCACACATAGTGCTATTCAAA
* * * *
82010745 TTCGCACACTTAGTGCCATGCTAA
1 TTCGCACACATAGTGCTATTCAAA
** * **
82010769 CCCACACACATAGTGCCT-TAGAAA
1 TTCGCACACATAGTG-CTATTCAAA
* * * *
82010793 TCCACACAATCGTATTGAC-ATTCAAA
1 TTCGCAC-A-CATAGTG-CTATTCAAA
82010819 -TCAGCACACATAGTGCTATTC-AA
1 TTC-GCACACATAGTGCTATTCAAA
*
82010842 TTCCGCACACATAGTGCCATTCAAAA
1 TT-CGCACACATAGTGCTATTC-AAA
* *
82010868 TCCGCACACTTAGTGC
1 TTCGCACACATAGTGC
82010884 CAATGTCATT
Statistics
Matches: 104, Mismatches: 25, Indels: 19
0.70 0.17 0.13
Matches are distributed among these distances:
23 3 0.03
24 67 0.64
25 18 0.17
26 16 0.15
ACGTcount: A:0.33, C:0.29, G:0.13, T:0.25
Consensus pattern (24 bp):
TTCGCACACATAGTGCTATTCAAA
Found at i:82016248 original size:18 final size:19
Alignment explanation
Indices: 82016215--82016262 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 19
82016205 TCATAACAGC
*
82016215 CTACATTTTCCTTCCT-TT
1 CTACATTTTTCTTCCTCTT
82016233 C-ACATTTTTCTATCCTCTT
1 CTACATTTTTCT-TCCTCTT
82016252 CTACAATTTTT
1 CTAC-ATTTTT
82016263 ACGAAATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 9 0.36
18 5 0.20
19 3 0.12
20 2 0.08
21 6 0.24
ACGTcount: A:0.17, C:0.29, G:0.00, T:0.54
Consensus pattern (19 bp):
CTACATTTTTCTTCCTCTT
Found at i:82018794 original size:25 final size:25
Alignment explanation
Indices: 82018760--82018807 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
82018750 CTGTCTCGAA
82018760 GCATAAGCTACAACTTTTCCTTCTT
1 GCATAAGCTACAACTTTTCCTTCTT
82018785 GCATAAGCTACAACTTTTCCTTC
1 GCATAAGCTACAACTTTTCCTTC
82018808 ATCCTAGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.29, G:0.08, T:0.38
Consensus pattern (25 bp):
GCATAAGCTACAACTTTTCCTTCTT
Found at i:82023475 original size:21 final size:21
Alignment explanation
Indices: 82023449--82023489 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
82023439 ATATGTGAAT
82023449 ATATCATAGCATATCATGTAC
1 ATATCATAGCATATCATGTAC
*
82023470 ATATCATGGCATATCATGTA
1 ATATCATAGCATATCATGTA
82023490 AAAAAGCAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (21 bp):
ATATCATAGCATATCATGTAC
Found at i:82023556 original size:25 final size:25
Alignment explanation
Indices: 82023528--82023578 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
82023518 ATAACATAAC
* * *
82023528 CCTAGGGGTATAATGGTCATTTTCA
1 CCTAGGGGCAGAAAGGTCATTTTCA
82023553 CCTAGGGGCAGAAAGGTCATTTTCA
1 CCTAGGGGCAGAAAGGTCATTTTCA
82023578 C
1 C
82023579 ATTATAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (25 bp):
CCTAGGGGCAGAAAGGTCATTTTCA
Found at i:82031331 original size:10 final size:10
Alignment explanation
Indices: 82031318--82031356 Score: 69
Period size: 10 Copynumber: 3.8 Consensus size: 10
82031308 ATATGTGAAT
82031318 ATATCATGGC
1 ATATCATGGC
82031328 ATATCATGTGC
1 ATATCATG-GC
82031339 ATATCATGGC
1 ATATCATGGC
82031349 ATATCATG
1 ATATCATG
82031357 TACAAAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:82031344 original size:21 final size:21
Alignment explanation
Indices: 82031318--82031357 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
82031308 ATATGTGAAT
82031318 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATGTGC
82031339 ATATCATGGCATATCATGT
1 ATATCATGGCATATCATGT
82031358 ACAAAATCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATCATGGCATATCATGTGC
Found at i:82032496 original size:22 final size:22
Alignment explanation
Indices: 82032455--82032496 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
82032445 AGTGATGATG
82032455 AGAAAGAAAGTAGTAGCTGGGA
1 AGAAAGAAAGTAGTAGCTGGGA
*
82032477 AGAAAGGAA-TAGTAGACTGG
1 AGAAAGAAAGTAGTAG-CTGG
82032497 TTTTGGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.45, C:0.05, G:0.36, T:0.14
Consensus pattern (22 bp):
AGAAAGAAAGTAGTAGCTGGGA
Found at i:82039246 original size:37 final size:37
Alignment explanation
Indices: 82039189--82039291 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
82039179 CGAATAGTCC
* *
82039189 CCACACGTAGTTATCAGGTCTTACTCGGACGAAATCT
1 CCACACGTAGTCATCGGGTCTTACTCGGACGAAATCT
* *
82039226 CCACACGTAGTCATCGGGTCTTACCCGGACGTAATCT
1 CCACACGTAGTCATCGGGTCTTACTCGGACGAAATCT
82039263 CCACACGTAGTCATCGGGTCTTACTCGGA
1 CCACACGTAGTCATCGGGTCTTACTCGGA
82039292 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.25
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACTCGGACGAAATCT
Found at i:82039518 original size:48 final size:48
Alignment explanation
Indices: 82039461--82039792 Score: 213
Period size: 48 Copynumber: 6.5 Consensus size: 48
82039451 CTAGCCGAAT
* *
82039461 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCG
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCA
* *
82039509 CATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCA
* * * * *
82039557 CACTATCCATTCGGCTTTACCATTAGCCAT-TCGGCTTTACCGCATATACATA-TCTCA
1 CACTAGCCATTCGGCTTTACC---A--CATAT--AC-ATATCTC--ATACATAGT-TCA
* * * * * * * *
82039614 TACATATTTCACATTAGCCATT-CCGC-TTTACCGCATATACATATCTCATACATATTTCA
1 CAC-TA--GC-CATTCGGCTTTACCACATATA---CAT------ATCTCATACATAGTTCA
* * *
82039673 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCA
* *
82039721 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCA
*
82039769 CATTAGCCATTCGGCTTTACCACA
1 CACTAGCCATTCGGCTTTACCACA
82039793 CACATATATA
Statistics
Matches: 228, Mismatches: 28, Indels: 56
0.73 0.09 0.18
Matches are distributed among these distances:
48 151 0.66
51 1 0.00
52 1 0.00
53 2 0.01
54 5 0.02
55 15 0.07
56 7 0.03
57 15 0.07
58 4 0.02
59 11 0.05
60 5 0.02
61 11 0.05
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCA
Found at i:82039603 original size:116 final size:116
Alignment explanation
Indices: 82039464--82039693 Score: 388
Period size: 116 Copynumber: 2.0 Consensus size: 116
82039454 GCCGAATCAC
* *
82039464 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCGCATTAGCCATTCGGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCCGCTTTAC
* *
82039529 CACGTATACATATCTCATACATAGTTCACACTATCCATTCGGCTTTACCAT
66 CACATATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCAT
*
82039580 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCCGCTTTAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCCGCTTTAC
* * *
82039645 CGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACC
66 CACATATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACC
82039694 GCATATACAT
Statistics
Matches: 106, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
116 106 1.00
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.35
Consensus pattern (116 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCCGCTTTAC
CACATATACATATCTCATACATAGTTCACACTAGCCATTCGGCTTTACCAT
Found at i:82039618 original size:68 final size:68
Alignment explanation
Indices: 82039509--82039645 Score: 220
Period size: 68 Copynumber: 2.0 Consensus size: 68
82039499 ACATATTTCG
* * *
82039509 CATTAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACACTATCCATTCGGCTT
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCATTCCGCTT
82039574 TAC
66 TAC
* * *
82039577 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCCGCTT
1 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCATTCCGCTT
82039642 TAC
66 TAC
82039645 C
1 C
82039646 GCATATACAT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.34
Consensus pattern (68 bp):
CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAGTTCACACTAGCCATTCCGCTT
TAC
Found at i:82039741 original size:96 final size:96
Alignment explanation
Indices: 82039577--82039789 Score: 408
Period size: 96 Copynumber: 2.2 Consensus size: 96
82039567 TCGGCTTTAC
82039577 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCCGCTT
1 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCCGCTT
*
82039642 TACCGCATATACATATCTCATACATATTTCA
66 TACCACATATACATATCTCATACATATTTCA
*
82039673 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCGGCTT
1 CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCCGCTT
82039738 TACCACATATACATATCTCATACATATTTCA
66 TACCACATATACATATCTCATACATATTTCA
82039769 CATTAGCCATTCGGCTTTACC
1 CATTAGCCATTCGGCTTTACC
82039790 ACACACATAT
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 115 1.00
ACGTcount: A:0.29, C:0.28, G:0.08, T:0.35
Consensus pattern (96 bp):
CATTAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACATTAGCCATTCCGCTT
TACCACATATACATATCTCATACATATTTCA
Found at i:82045930 original size:23 final size:26
Alignment explanation
Indices: 82045899--82045948 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 26
82045889 TCTAACCATC
82045899 TTCTCTGTC-CCAGA-TTCAAA-TCT
1 TTCTCTGTCACCAGATTTCAAACTCT
* *
82045922 TTCTGTGTCATCAGATTTCAAACTCT
1 TTCTCTGTCACCAGATTTCAAACTCT
82045948 T
1 T
82045949 AAATTAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 8 0.36
24 4 0.18
25 6 0.27
26 4 0.18
ACGTcount: A:0.22, C:0.26, G:0.10, T:0.42
Consensus pattern (26 bp):
TTCTCTGTCACCAGATTTCAAACTCT
Found at i:82050175 original size:43 final size:43
Alignment explanation
Indices: 82050105--82050189 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
82050095 TACATGAATT
* * **
82050105 GCATCCATCATGAACTCGGACCACTCAACAAGCTCGGATGCTC
1 GCATCCATAATAAACTCAAACCACTCAACAAGCTCGGATGCTC
* *
82050148 GCATCCATAATAAACTCAAACCTCTCAACGAGCTCGGATGCT
1 GCATCCATAATAAACTCAAACCACTCAACAAGCTCGGATGCT
82050190 ACATACCTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.31, C:0.33, G:0.16, T:0.20
Consensus pattern (43 bp):
GCATCCATAATAAACTCAAACCACTCAACAAGCTCGGATGCTC
Found at i:82050219 original size:42 final size:43
Alignment explanation
Indices: 82050124--82050219 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 43
82050114 ATGAACTCGG
* * *
82050124 ACCACTCAACAAGCTCGGATGCTCGCATCCATAATAAACTCAA
1 ACCACTCAACGAGCTCGGATGCTCACATCCATAATAAACCCAA
* * *
82050167 ACCTCTCAACGAGCTCGGATGCT-ACATACC-TCATGAACCCAA
1 ACCACTCAACGAGCTCGGATGCTCACAT-CCATAATAAACCCAA
82050209 ACCACTCAACG
1 ACCACTCAACG
82050220 TGTTCGAACT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 22 0.49
43 23 0.51
ACGTcount: A:0.34, C:0.35, G:0.12, T:0.18
Consensus pattern (43 bp):
ACCACTCAACGAGCTCGGATGCTCACATCCATAATAAACCCAA
Found at i:82056022 original size:39 final size:39
Alignment explanation
Indices: 82055968--82056045 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
82055958 TGACTTGCTG
*
82055968 GCGAGTTGGAGTATTGGTGTATACTAGCATTAAAGTATT
1 GCGAGTTGGAGTATTGGTGTATACAAGCATTAAAGTATT
82056007 GCGAGTTGGAGTATTGGTGTATACAAGCATTAAAGTATT
1 GCGAGTTGGAGTATTGGTGTATACAAGCATTAAAGTATT
82056046 CTCTTGTTGG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.29, C:0.08, G:0.28, T:0.35
Consensus pattern (39 bp):
GCGAGTTGGAGTATTGGTGTATACAAGCATTAAAGTATT
Found at i:82058327 original size:17 final size:17
Alignment explanation
Indices: 82058305--82058339 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
82058295 GATAAACCAG
82058305 AAACAGAAAAAGAAATT
1 AAACAGAAAAAGAAATT
82058322 AAACAGAAAAAGAAATT
1 AAACAGAAAAAGAAATT
82058339 A
1 A
82058340 TCCCTAGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.71, C:0.06, G:0.11, T:0.11
Consensus pattern (17 bp):
AAACAGAAAAAGAAATT
Found at i:82068947 original size:26 final size:27
Alignment explanation
Indices: 82068906--82069071 Score: 101
Period size: 27 Copynumber: 6.3 Consensus size: 27
82068896 TTAGTTTACC
**
82068906 AAATTACTGAAATACCCCCAG-TTGTA
1 AAATTACCAAAATACCCCCAGATTGTA
* * * * *
82068932 AAATTACCAAAGTACCCTCGGTTTATA
1 AAATTACCAAAATACCCCCAGATTGTA
* ***
82068959 AAATTACCAAAATGCTGTC-GATTGTA
1 AAATTACCAAAATACCCCCAGATTGTA
* *
82068985 AAATTACTAAAATACCCTC-GACTTGTA
1 AAATTACCAAAATACCCCCAGA-TTGTA
*
82069012 AAATTACCAAAGTACCCCC-GATT-TA
1 AAATTACCAAAATACCCCCAGATTGTA
* ***
82069037 TAATATTACCGAAATA-CCGTTGATTGTA
1 -AA-ATTACCAAAATACCCCCAGATTGTA
82069065 AAATTAC
1 AAATTAC
82069072 TGAAACTCTT
Statistics
Matches: 111, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
25 2 0.02
26 49 0.44
27 58 0.52
28 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCCAGATTGTA
Found at i:82068964 original size:27 final size:27
Alignment explanation
Indices: 82068930--82069107 Score: 139
Period size: 27 Copynumber: 6.7 Consensus size: 27
82068920 CCCCCAGTTG
* *
82068930 TAAAATTACCAAAGTACCCTCGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ** *
82068957 TAAAATTACCAAAATGCTGTCGA-TTG
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
82068983 TAAAATTACTAAAATACCCTCGACTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* *
82069010 TAAAATTACCAAAGTACCCCCGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * * * *
82069037 TAATATTACCGAAATACCGTTGA-TTG
1 TAAAATTACCAAAATACCCTCGATTTA
** * *
82069063 TAAAATTA-CTGAA-ACTCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
*
82069088 TAAAATTACCGAAATACCCT
1 TAAAATTACCAAAATACCCT
82069108 TGTAGGATAG
Statistics
Matches: 116, Mismatches: 31, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
24 6 0.05
25 13 0.11
26 33 0.28
27 64 0.55
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:82069034 original size:53 final size:52
Alignment explanation
Indices: 82068906--82069071 Score: 147
Period size: 53 Copynumber: 3.1 Consensus size: 52
82068896 TTAGTTTACC
** * * *
82068906 AAATTACTGAAATACCCCC-AGTTGTAAAATTACCAAAGTACCCTCGGTTTATA
1 AAATTACCAAAATACCCCCGA-TTGTAAAATTACCAAAATACCCTC-GATTGTA
* *** *
82068959 AAATTACCAAAATGCTGTCGATTGTAAAATTACTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCCCGATTGTAAAATTACCAAAATACCCTCGA-TTGTA
* * * *
82069012 AAATTACCAAAGTACCCCCGATT-TATAATATTACCGAAATACCGTTGATTGTA
1 AAATTACCAAAATACCCCCGATTGTA-AA-ATTACCAAAATACCCTCGATTGTA
82069065 AAATTAC
1 AAATTAC
82069072 TGAAACTCTT
Statistics
Matches: 90, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
52 3 0.03
53 71 0.79
54 16 0.18
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (52 bp):
AAATTACCAAAATACCCCCGATTGTAAAATTACCAAAATACCCTCGATTGTA
Found at i:82069038 original size:80 final size:79
Alignment explanation
Indices: 82068906--82069072 Score: 235
Period size: 80 Copynumber: 2.1 Consensus size: 79
82068896 TTAGTTTACC
* * * *
82068906 AAATTACTGAAATACCCCCAGTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCAAAA
1 AAATTACTAAAATACCCCCACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCAAAA
* *
82068971 TGCTGTCGATTGTA
66 TACCGTCGATTGTA
* * *
82068985 AAATTACTAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAATATTACCGAA
1 AAATTACTAAAATACCC-CCACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCAAA
*
82069050 ATACCGTTGATTGTA
65 ATACCGTCGATTGTA
82069065 AAATTACT
1 AAATTACT
82069073 GAAACTCTTG
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
79 16 0.21
80 61 0.79
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (79 bp):
AAATTACTAAAATACCCCCACTTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCAAAA
TACCGTCGATTGTA
Found at i:82069483 original size:27 final size:27
Alignment explanation
Indices: 82069091--82069472 Score: 396
Period size: 27 Copynumber: 14.2 Consensus size: 27
82069081 TGATTTATAA
*
82069091 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGATAG
* * *
82069118 AATTACTGAAAAACCCTTGTA-GAGTAG
1 AATTACCGAAATACCCCTGTAGGA-TAG
* *
82069145 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
*
82069172 AATTACCGAAATACCCCTGTAATG-TAG
1 AATTACCGAAATACCCCTGT-AGGATAG
* *
82069199 AATTACTGAAATACCCCTATAAGG-TAG
1 AATTACCGAAATACCCCTGT-AGGATAG
* *
82069226 AATTACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
* * *
82069253 AATTGCTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
* * *
82069280 AAATACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
** *
82069307 AATTATTGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGATAG
* *
82069334 AAATACCGAAATACCCTTGTATGG-TAG
1 AATTACCGAAATACCCCTGTA-GGATAG
* * *
82069361 AAATATCGAAATACCCTTGTAGG-TAG
1 AATTACCGAAATACCCCTGTAGGATAG
** *
82069387 AATTACTAAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGATAG
* * *
82069414 AATTAACGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGATAG
* *
82069441 AAATACAGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGATAG
82069468 AATTA
1 AATTA
82069473 TTGAGATACC
Statistics
Matches: 297, Mismatches: 52, Indels: 12
0.82 0.14 0.03
Matches are distributed among these distances:
26 27 0.09
27 265 0.89
28 5 0.02
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGATAG
Found at i:82069882 original size:22 final size:22
Alignment explanation
Indices: 82069850--82069908 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
82069840 CCCGTTATCG
*
82069850 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
82069872 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
82069894 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
82069909 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:82070096 original size:27 final size:27
Alignment explanation
Indices: 82070066--82070146 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
82070056 ATTCTGTTAA
* *
82070066 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
*
82070093 GTGGCTATGCCACAAATATTTG-TTCTG
1 GTGGCTATGCCAC-AATATCTGATTCTG
*
82070120 GTGGCTCTGCCACAATATCT-ATTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
82070146 G
1 G
82070147 CAGCCATGCT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 12 0.26
27 29 0.62
28 6 0.13
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
GTGGCTATGCCACAATATCTGATTCTG
Found at i:82070301 original size:31 final size:31
Alignment explanation
Indices: 82070266--82070406 Score: 201
Period size: 31 Copynumber: 4.5 Consensus size: 31
82070256 TTGCATTCAC
*
82070266 ATTCTGATTTTGATTCTGTTACTTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
82070297 ATTCTAATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
82070328 ATTCTGATTTTGATTCGGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * * *
82070359 ATTCTGATTCTGATTCTGTCACTTCATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
82070390 ATTCTGATTCTGATTCT
1 ATTCTGATTTTGATTCT
82070407 AGTTCTGATA
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 100 1.00
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:82070334 original size:6 final size:6
Alignment explanation
Indices: 82070266--82070415 Score: 96
Period size: 6 Copynumber: 24.3 Consensus size: 6
82070256 TTGCATTCAC
* * * *
82070266 ATTCTG ATTTTG ATTCTG -TTACTTG ATACTG ATTCTA ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
82070315 -TTACCTG ATACTG ATTCTG ATTTTG ATTC-G GTTACCTG ATACTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
82070365 ATTCTG ATTCTG TCACTTC-- ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG --A-TTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
82070414 AT
1 AT
82070416 AATGTTTCTT
Statistics
Matches: 112, Mismatches: 16, Indels: 32
0.70 0.10 0.20
Matches are distributed among these distances:
4 3 0.03
5 9 0.08
6 84 0.75
7 8 0.07
8 5 0.04
9 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:82072388 original size:26 final size:26
Alignment explanation
Indices: 82072359--82072559 Score: 86
Period size: 27 Copynumber: 7.6 Consensus size: 26
82072349 TTAGTTTACC
82072359 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTACTGAAATACCCCCAGTTGTA
* * *
82072385 AAATTACAT-AAGTACCCCCGGTTTATA
1 AAATTAC-TGAAATACCCCCAG-TTGTA
* * **
82072412 AAATTACCGAAATGCCGTC-GATTGTA
1 AAATTACTGAAATACCCCCAG-TTGTA
* * *
82072438 AAATTACTAAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCC-CCAGTTGTA
* * * *
82072465 AAATTGC-CAAAGTACCCCCGATTTTTA
1 AAATTACTGAAA-TACCCCC-AGTTGTA
** ** * *
82072492 AAATTACCCAAATATCATCGATTTGTA
1 AAATTACTGAAATA-CCCCCAGTTGTA
* ***
82072519 AAATTACCGAAATA-CCGTTGATTGTA
1 AAATTACTGAAATACCCCCAG-TTGTA
82072545 AAATTACTGAAATAC
1 AAATTACTGAAATAC
82072560 TCTTGATTTA
Statistics
Matches: 129, Mismatches: 35, Indels: 21
0.70 0.19 0.11
Matches are distributed among these distances:
26 57 0.44
27 66 0.51
28 6 0.05
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.29
Consensus pattern (26 bp):
AAATTACTGAAATACCCCCAGTTGTA
Found at i:82072494 original size:80 final size:80
Alignment explanation
Indices: 82072359--82072587 Score: 241
Period size: 80 Copynumber: 2.9 Consensus size: 80
82072349 TTAGTTTACC
* * *
82072359 AAATTACTGAAATACCC-CCAGTTGTAAAATTACATAAGTACCCCCGGTTTATAAAATTACCGAA
1 AAATTACTGAAATACCCTCGA-TTGTAAAATTACATAAGTACCCCCGATTTATAAAATTACCCAA
* *
82072423 ATGCCGTCGA-TTGTA
65 ATACCATCGATTTGTA
* * *
82072438 AAATTACTAAAATACCCTCGACTTGTAAAATTGCCA-AAGTACCCCCGATTTTTAAAATTACCCA
1 AAATTACTGAAATACCCTCGA-TTGTAAAATT-ACATAAGTACCCCCGATTTATAAAATTACCCA
*
82072502 AATATCATCGATTTGTA
64 AATACCATCGATTTGTA
* * * * * ** *
82072519 AAATTACCGAAATACCGTTGATTGTAAAATTAC-TGAAATACTCTTGATTTATAAAATTACCAAA
1 AAATTACTGAAATACCCTCGATTGTAAAATTACAT-AAGTACCCCCGATTTATAAAATTACCCAA
82072583 ATACC
65 ATACC
82072588 CTTGTAGGAT
Statistics
Matches: 123, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
79 17 0.14
80 82 0.67
81 24 0.20
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (80 bp):
AAATTACTGAAATACCCTCGATTGTAAAATTACATAAGTACCCCCGATTTATAAAATTACCCAAA
TACCATCGATTTGTA
Found at i:82072591 original size:27 final size:27
Alignment explanation
Indices: 82072383--82072589 Score: 150
Period size: 27 Copynumber: 7.7 Consensus size: 27
82072373 CCCCCAGTTG
* * *
82072383 TAAAATTA-CATAAGTACCCCCGGTTTA
1 TAAAATTACCA-AAATACCCTCGATTTA
* * * *
82072410 TAAAATTACCGAAATGCCGTCGA-TTG
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
82072436 TAAAATTACTAAAATACCCTCGACTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
82072463 TAAAATTGCCAAAGTACCCCCGATTTT
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
82072490 TAAAATTACCCAAATATCATCGATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* * * *
82072517 TAAAATTACCGAAATACCGTTGA-TTG
1 TAAAATTACCAAAATACCCTCGATTTA
** * *
82072543 TAAAATTACTGAAATACTCTTGATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
82072570 TAAAATTACCAAAATACCCT
1 TAAAATTACCAAAATACCCT
82072590 TGTAGGATAG
Statistics
Matches: 142, Mismatches: 35, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
26 44 0.31
27 97 0.68
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:82072603 original size:27 final size:27
Alignment explanation
Indices: 82072573--82072928 Score: 374
Period size: 27 Copynumber: 13.3 Consensus size: 27
82072563 TGATTTATAA
* * *
82072573 AATTACCAAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
82072600 AATTACTGAAAAACCCTTGTAGAGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
82072627 AATTACCAAAATACCCCTGTAATGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
82072654 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82072681 AATTGCCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82072708 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
82072735 AATTATTGAAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82072762 AAATACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82072789 AAATATCGAAATA-CCCTGTA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
82072814 AATTACTAAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
82072841 AATTAACGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
82072868 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
82072895 AATTACTGAGATACCCTTATGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
82072922 AATTACC
1 AATTACC
82072929 CTTTTTGTCC
Statistics
Matches: 268, Mismatches: 59, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
25 14 0.05
26 13 0.05
27 241 0.90
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:82072658 original size:81 final size:81
Alignment explanation
Indices: 82072573--82072910 Score: 457
Period size: 81 Copynumber: 4.2 Consensus size: 81
82072563 TGATTTATAA
* * * * * *
82072573 AATTACCAAAATACCCTTGTAGGATAGAATTACTGAAAAACCCTTGTAGAGTA-AAATTACCAAA
1 AATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAA-TACCGAA
*
82072637 ATACCCCTGTAATGTAG
65 ATACCCCTGTAAGGTAG
* * * *
82072654 AATTATTGAAATACCCCTGTAGGGTAGAATTGCCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
*
82072719 TACCCCTGTAGGGTAG
66 TACCCCTGTAAGGTAG
* * * * *
82072735 AATTATTGAAATACCCCTATAGGATAGAAATACCGAAATACCCTTGTAGGGTAGAAATATCGAAA
1 AATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
82072800 TA-CCCTGT-AGGTAG
66 TACCCCTGTAAGGTAG
*
82072814 AATTACTAAAATACCCCTGTAGGATAGAATTAACGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
*
82072879 TACCCCTGTAGGGTAG
66 TACCCCTGTAAGGTAG
* *
82072895 AATTACTGAGATACCC
1 AATTACTAAAATACCC
82072911 TTATGGGGTA
Statistics
Matches: 227, Mismatches: 27, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
79 66 0.29
80 12 0.05
81 146 0.64
82 3 0.01
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (81 bp):
AATTACTAAAATACCCCTGTAGGATAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
TACCCCTGTAAGGTAG
Found at i:82073261 original size:20 final size:20
Alignment explanation
Indices: 82073213--82073261 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
82073203 CGAAGGCTGT
*
82073213 GTGCCGTTATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
***
82073233 GTATTGATATTGTGGGCTTC
1 GTGCCGATATTGTGGGCTTC
82073253 GTGCCGATA
1 GTGCCGATA
82073262 ATAGACCCGT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.12, C:0.16, G:0.33, T:0.39
Consensus pattern (20 bp):
GTGCCGATATTGTGGGCTTC
Found at i:82073309 original size:22 final size:22
Alignment explanation
Indices: 82073277--82073335 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
82073267 CCCGTTTTTG
*
82073277 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
82073299 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
82073321 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
82073336 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:82073571 original size:26 final size:27
Alignment explanation
Indices: 82073508--82073573 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
82073498 TTTGCCATAT
*
82073508 TATCTGATTCTGGTGGCTATGCCACAAA
1 TATCT-ATTCTGGTGGCTATACCACAAA
* * *
82073536 TATTTGTTCTGGTGGCTCTACCAC-AA
1 TATCTATTCTGGTGGCTATACCACAAA
82073562 TATCTATTCTGG
1 TATCTATTCTGG
82073574 CAGCCATGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 12 0.38
27 16 0.50
28 4 0.12
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (27 bp):
TATCTATTCTGGTGGCTATACCACAAA
Found at i:82073728 original size:31 final size:31
Alignment explanation
Indices: 82073693--82073834 Score: 169
Period size: 31 Copynumber: 4.6 Consensus size: 31
82073683 TTGCATTCAC
82073693 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
* * *
82073724 ATTCTAATTTTGATTCTGTTACCTGATATTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
*
82073755 ATTCTGATTTTGATTC-AGTTACCTGATACTA
1 ATTCTGATTTTGATTCTA-TTACCTGATACTG
* * * * * *
82073786 ATTCTGATTCTGATTCTGTCACTTAATTCTG
1 ATTCTGATTTTGATTCTATTACCTGATACTG
*
82073817 ATTCTGATTCTGATTCTA
1 ATTCTGATTTTGATTCTA
82073835 GTTCTGATAA
Statistics
Matches: 94, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
31 94 1.00
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTATTACCTGATACTG
Found at i:82073762 original size:6 final size:6
Alignment explanation
Indices: 82073693--82073842 Score: 78
Period size: 6 Copynumber: 24.3 Consensus size: 6
82073683 TTGCATTCAC
* * * *
82073693 ATTCTG ATTTTG ATTCT- ATTACCTG ATACTG ATTCTA ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
82073742 -TTACCTG ATAT-TG ATTCTG ATTTTG ATTCAG -TTACCTG ATACTA ATTCTG
1 ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
82073792 ATTCTG ATTCTG -TCACTTA ATTCTG ATTCTG ATTCTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
82073841 AT
1 AT
82073843 AATGTTTCTT
Statistics
Matches: 108, Mismatches: 20, Indels: 32
0.68 0.12 0.20
Matches are distributed among these distances:
5 10 0.09
6 82 0.76
7 10 0.09
8 5 0.05
9 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:82073790 original size:62 final size:63
Alignment explanation
Indices: 82073693--82073837 Score: 197
Period size: 62 Copynumber: 2.3 Consensus size: 63
82073683 TTGCATTCAC
* * * *
82073693 ATTCTGATTTTGATTCTA-TTACCTGATACTGATTCTAATTTTGATTCTGTTACCTGATAT-TG
1 ATTCTGATTTTGATTCTAGTTACCTGATACTAATTCTAATTCTGATTCTGTCACCTAAT-TCTG
* *
82073755 ATTCTGATTTTGATTC-AGTTACCTGATACTAATTCTGATTCTGATTCTGTCACTTAATTCTG
1 ATTCTGATTTTGATTCTAGTTACCTGATACTAATTCTAATTCTGATTCTGTCACCTAATTCTG
*
82073817 ATTCTGATTCTGATTCTAGTT
1 ATTCTGATTTTGATTCTAGTT
82073838 CTGATAATGT
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
61 2 0.03
62 67 0.92
63 4 0.05
ACGTcount: A:0.22, C:0.16, G:0.13, T:0.49
Consensus pattern (63 bp):
ATTCTGATTTTGATTCTAGTTACCTGATACTAATTCTAATTCTGATTCTGTCACCTAATTCTG
Found at i:82079068 original size:17 final size:17
Alignment explanation
Indices: 82079046--82079086 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
82079036 TGTTTCTCTG
82079046 AAATTTATAGCTTTAAA
1 AAATTTATAGCTTTAAA
*
82079063 AAATTTCTAGCTTTAAA
1 AAATTTATAGCTTTAAA
82079080 AAATTTA
1 AAATTTA
82079087 ATCTCTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.41
Consensus pattern (17 bp):
AAATTTATAGCTTTAAA
Found at i:82081338 original size:23 final size:20
Alignment explanation
Indices: 82081312--82081361 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
82081302 GGATTTTTAG
82081312 TATTTGTGCATATTAGATTTATT
1 TATTTGTGC--ATTA-ATTTATT
*
82081335 TATTCGTGCATTAATTTATT
1 TATTTGTGCATTAATTTATT
*
82081355 TAATTGT
1 TATTTGT
82081362 CAAATGTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 12 0.50
21 4 0.17
23 8 0.33
ACGTcount: A:0.26, C:0.06, G:0.12, T:0.56
Consensus pattern (20 bp):
TATTTGTGCATTAATTTATT
Found at i:82082570 original size:18 final size:18
Alignment explanation
Indices: 82082547--82082582 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
82082537 TGGAAAAAAT
82082547 AGAGAGGGTAAGCATAAA
1 AGAGAGGGTAAGCATAAA
82082565 AGAGAGGGTAAGCATAAA
1 AGAGAGGGTAAGCATAAA
82082583 GCTTCGTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.33, T:0.11
Consensus pattern (18 bp):
AGAGAGGGTAAGCATAAA
Found at i:82082570 original size:20 final size:19
Alignment explanation
Indices: 82082542--82082582 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
82082532 GGAAATGGAA
82082542 AAAATAGAGAGGGTAAGCAT
1 AAAA-AGAGAGGGTAAGCAT
82082562 -AAAAGAGAGGGTAAGCAT
1 AAAAAGAGAGGGTAAGCAT
82082580 AAA
1 AAA
82082583 GCTTCGTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.54, C:0.05, G:0.29, T:0.12
Consensus pattern (19 bp):
AAAAAGAGAGGGTAAGCAT
Found at i:82085643 original size:82 final size:81
Alignment explanation
Indices: 82085527--82085682 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
82085517 AAATTGTACA
* * * *
82085527 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
82085591 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82085608 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
82085673 TGCGAGTTGA
65 TGCGAATTGA
82085683 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82085650 original size:55 final size:52
Alignment explanation
Indices: 82085526--82085679 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
82085516 TAAATTGTAC
* *
82085526 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
82085579 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
82085634 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
82085680 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:82085684 original size:27 final size:27
Alignment explanation
Indices: 82085527--82085682 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
82085517 AAATTGTACA
*
82085527 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
82085554 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
82085581 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
82085608 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
82085636 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
82085663 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
82085683 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:82085693 original size:27 final size:27
Alignment explanation
Indices: 82085519--82085703 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
82085509 GCGGGATTAA
*
82085519 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
82085546 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
82085573 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
82085600 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
82085628 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
82085655 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
82085682 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
82085704 GGCTCATTAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:82085694 original size:82 final size:81
Alignment explanation
Indices: 82085519--82085703 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
82085509 GCGGGATTAA
* * * *
82085519 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
82085584 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
82085600 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
82085664 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
82085682 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
82085704 GGCTCATTAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:82093690 original size:82 final size:81
Alignment explanation
Indices: 82093574--82093729 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
82093564 AAATTGTACA
* * * *
82093574 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
82093638 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
82093655 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
82093720 TGCGAGTTGA
65 TGCGAATTGA
82093730 TTGTATAGCT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:82093697 original size:55 final size:52
Alignment explanation
Indices: 82093573--82093726 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
82093563 TAAATTGTAC
* *
82093573 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
82093626 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
82093681 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
82093727 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:82093731 original size:27 final size:27
Alignment explanation
Indices: 82093574--82093729 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
82093564 AAATTGTACA
*
82093574 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
82093601 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
82093628 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
82093655 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
82093683 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
82093710 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
82093730 TTGTATAGCT
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:82097109 original size:45 final size:45
Alignment explanation
Indices: 82097050--82097135 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
82097040 ATCTCATATA
* * *
82097050 GATGCCACTGTCCCAGATAG-GATCTTACACGTAACCACATAGATC
1 GATGCCAATGTCCCAGAT-GTGATCTTACACGAAAACACATAGATC
*
82097095 GATGCCAATGTCCCAGATGTGGTCTTACACGAAAACACATA
1 GATGCCAATGTCCCAGATGTGATCTTACACGAAAACACATA
82097136 TCAGAATCCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
44 1 0.03
45 35 0.97
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (45 bp):
GATGCCAATGTCCCAGATGTGATCTTACACGAAAACACATAGATC
Found at i:82103230 original size:59 final size:59
Alignment explanation
Indices: 82103163--82103280 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
82103153 GACTTCAAGT
82103163 GCAAGTCTAATGAAGGAAGTGATGTCTTTTATGTAGTTAGTGATCAAGTGGATCGACAC
1 GCAAGTCTAATGAAGGAAGTGATGTCTTTTATGTAGTTAGTGATCAAGTGGATCGACAC
82103222 GCAAGTCTAATGAAGGAAGTGATGTCTTTTATGTAGTTAGTGATCAAGTGGATCGACAC
1 GCAAGTCTAATGAAGGAAGTGATGTCTTTTATGTAGTTAGTGATCAAGTGGATCGACAC
82103281 ATCCCCTACG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (59 bp):
GCAAGTCTAATGAAGGAAGTGATGTCTTTTATGTAGTTAGTGATCAAGTGGATCGACAC
Found at i:82104267 original size:34 final size:33
Alignment explanation
Indices: 82104222--82104294 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
82104212 ATGCATTATG
*
82104222 GATACTGTACTGAAATGGGTTAAGGCCCACACT
1 GATACTGTACTGAAATGGGCTAAGGCCCACACT
* * *
82104255 GTTACTGCTACTGTAATGGGCTAAGGCCTACACT
1 GATACTG-TACTGAAATGGGCTAAGGCCCACACT
82104289 GATACT
1 GATACT
82104295 ACTTTGGATA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 6 0.18
34 28 0.82
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (33 bp):
GATACTGTACTGAAATGGGCTAAGGCCCACACT
Found at i:82108460 original size:19 final size:19
Alignment explanation
Indices: 82108436--82108477 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
82108426 TTGTTTCTGT
82108436 GGGAGAGTCTATGTATCAA
1 GGGAGAGTCTATGTATCAA
82108455 GGGAGAGTCTATGTATCAA
1 GGGAGAGTCTATGTATCAA
82108474 GGGA
1 GGGA
82108478 TACTGATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.36, T:0.24
Consensus pattern (19 bp):
GGGAGAGTCTATGTATCAA
Found at i:82116436 original size:40 final size:40
Alignment explanation
Indices: 82116263--82116522 Score: 268
Period size: 40 Copynumber: 6.7 Consensus size: 40
82116253 TTGAATGCTG
* * * * *
82116263 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
82116303 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
82116342 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACT--A
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
82116380 TCCGGGTT--GTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
82116418 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82116458 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
82116497 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
82116523 AACGAGGAGC
Statistics
Matches: 189, Mismatches: 20, Indels: 22
0.82 0.09 0.10
Matches are distributed among these distances:
35 19 0.10
36 3 0.02
37 8 0.04
38 10 0.05
39 38 0.20
40 103 0.54
41 8 0.04
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82116512 original size:79 final size:75
Alignment explanation
Indices: 82116316--82116520 Score: 225
Period size: 75 Copynumber: 2.7 Consensus size: 75
82116306 GGACTAAGAT
* * * * * * *
82116316 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTA
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTACTA
82116380 TCCGGGTTGTC
65 TCCGGGTTGTC
* * * *
82116391 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAG-TACT-
82116456 AATCCGGGTTAAGTC
64 -ATCCGGGTT--GTC
* *
82116471 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
82116521 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
75 49 0.44
76 6 0.05
78 9 0.08
79 34 0.30
80 14 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (75 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTACTAT
CCGGGTTGTC
Found at i:82116540 original size:79 final size:80
Alignment explanation
Indices: 82116264--82116555 Score: 219
Period size: 75 Copynumber: 3.7 Consensus size: 80
82116254 TGAATGCTGT
* ** * * **
82116264 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTATATCCGGGTTAAG-TCCCGAAGGCATT
* * *
82116327 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
82116344 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGT-AC--TATCCGGGTT--GTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTCG
* *
82116404 TGCGAGTTATTAAAT
66 TGCGAGTTACTAAAA
* ** * * *
82116419 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTCG
*
82116483 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * *
82116498 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTATATCCGGGTTAAGTCCCGAAGG
82116556 TACGTGATTT
Statistics
Matches: 177, Mismatches: 26, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
74 1 0.01
75 51 0.29
76 4 0.02
77 8 0.05
78 25 0.14
79 46 0.26
80 35 0.20
81 7 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:82120000 original size:35 final size:36
Alignment explanation
Indices: 82119905--82120117 Score: 130
Period size: 39 Copynumber: 5.7 Consensus size: 36
82119895 CTTGCACAAG
* * *
82119905 GCCTTCGGGTCTTTAGCCC-GATGTGGTCACTAGCATAAA
1 GCCTTCGGGTC-TTAGCCCGGATAT-ATCGCTAGC--AAA
* * *
82119944 TCCTTCGGGACTTA--CCGGATATATCGCTAG-AAT
1 GCCTTCGGGTCTTAGCCCGGATATATCGCTAGCAAA
*
82119977 GCCTTCGGGTTTTAGCCCGGATATATCGCTAGCACAAA
1 GCCTTCGGGTCTTAGCCCGGATATATCGCTAG--CAAA
* *
82120015 GCCTTCGGGTCTTAGCCCGG-TATATAGCAATCGCACGAA
1 GCCTTCGGGTCTTAGCCCGGATATATCGC--TAGCA--AA
* * * * *
82120054 TGCCTTCGGATCTTAGTCCAGTTATATCACCTAGCACAAA
1 -GCCTTCGGGTCTTAGCCCGGATATATC-GCTAG--CAAA
*
82120094 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
82120118 CATTCGAATA
Statistics
Matches: 135, Mismatches: 24, Indels: 30
0.71 0.13 0.16
Matches are distributed among these distances:
33 13 0.10
35 16 0.12
36 8 0.06
37 13 0.10
38 24 0.18
39 32 0.24
40 21 0.16
41 5 0.04
42 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (36 bp):
GCCTTCGGGTCTTAGCCCGGATATATCGCTAGCAAA
Found at i:82120068 original size:40 final size:39
Alignment explanation
Indices: 82119973--82120117 Score: 143
Period size: 39 Copynumber: 3.7 Consensus size: 39
82119963 TATATCGCTA
* *
82119973 GAATGCCTTCGGGTTTTAGCCCGGATATATCGCTAGCAC
1 GAATGCCTTCGGGTCTTAGCCCGGATATATAGCTAGCAC
* *
82120012 -AAAGCCTTCGGGTCTTAGCCCGG-TATATAGCAATCGCAC
1 GAATGCCTTCGGGTCTTAGCCCGGATATATAGC--TAGCAC
* * * * *
82120051 GAATGCCTTCGGATCTTAGTCCAGTTATATCACCTAGCAC
1 GAATGCCTTCGGGTCTTAGCCCGGATATAT-AGCTAGCAC
* *
82120091 -AAAGCCTTCGGGACTTAGCCCGGATAT
1 GAATGCCTTCGGGTCTTAGCCCGGATAT
82120118 CATTCGAATA
Statistics
Matches: 85, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
37 7 0.08
38 21 0.25
39 26 0.31
40 24 0.28
41 5 0.06
42 2 0.02
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
GAATGCCTTCGGGTCTTAGCCCGGATATATAGCTAGCAC
Found at i:82120108 original size:79 final size:77
Alignment explanation
Indices: 82119934--82120117 Score: 211
Period size: 78 Copynumber: 2.4 Consensus size: 77
82119924 GATGTGGTCA
* * * *
82119934 CTAGCATAAATCCTTCGGGACTTA--CCGGATAT----ATCGCTA-GAATGCCTTCGGGTTTTAG
1 CTAGCACAAAGCCTTCGGGACTTAGCCCGGATATAGCAATCGC-ACGAATGCCTTCGGATCTTAG
* *
82119992 CCCGGATATATCG
65 CCCAGATATATCC
*
82120005 CTAGCACAAAGCCTTCGGGTCTTAGCCCGGTATATAGCAATCGCACGAATGCCTTCGGATCTTAG
1 CTAGCACAAAGCCTTCGGGACTTAGCCCGG-ATATAGCAATCGCACGAATGCCTTCGGATCTTAG
* *
82120070 TCCAGTTATATCAC
65 CCCAGATATATC-C
82120084 CTAGCACAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTAGCACAAAGCCTTCGGGACTTAGCCCGGATAT
82120118 CATTCGAATA
Statistics
Matches: 94, Mismatches: 10, Indels: 11
0.82 0.09 0.10
Matches are distributed among these distances:
71 21 0.22
73 4 0.04
74 4 0.04
77 1 0.01
78 35 0.37
79 29 0.31
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (77 bp):
CTAGCACAAAGCCTTCGGGACTTAGCCCGGATATAGCAATCGCACGAATGCCTTCGGATCTTAGC
CCAGATATATCC
Found at i:82124181 original size:40 final size:40
Alignment explanation
Indices: 82124024--82124284 Score: 286
Period size: 39 Copynumber: 6.7 Consensus size: 40
82124014 TTGAATGCTG
* * * * *
82124024 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
82124064 TCCGGACTAAGAT-CCGAA-GCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82124102 TTCCGGGTTAAG-CCCGAAGGC-TTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
82124141 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
82124181 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82124220 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
82124259 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
82124285 AACGAGGAGC
Statistics
Matches: 194, Mismatches: 17, Indels: 20
0.84 0.07 0.09
Matches are distributed among these distances:
38 41 0.21
39 78 0.40
40 74 0.38
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82124306 original size:78 final size:79
Alignment explanation
Indices: 82124077--82124317 Score: 224
Period size: 78 Copynumber: 3.1 Consensus size: 79
82124067 GGACTAAGAT
* * * * * ** *
82124077 CCGAA-GCATTTGTGCGAGATAC-AAATTCCGGGTTAAG-CCCGAAGGC-TTTGTGCGAGATACT
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGA-GCT
82124138 AAATCCGGGTTAAGTC
64 AAATCCGGGTTAAGTC
* * * ** ***
82124154 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGAGCTAA
82124219 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
82124233 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGA-GAGCTA
* *
82124297 TATCC-GGTTAAATC
65 AATCCGGGTTAAGTC
82124311 CCGAAGG
1 CCGAAGG
82124318 TACGTGATTT
Statistics
Matches: 139, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
77 5 0.04
78 78 0.56
79 47 0.34
80 9 0.06
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGAGCTAA
ATCCGGGTTAAGTC
Found at i:82133995 original size:33 final size:33
Alignment explanation
Indices: 82133958--82134021 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
82133948 GGTAAGTTCA
*
82133958 TATGTATAATAAGCATTAATTTATATTTGAAAG
1 TATGTATAATAAGCATTAATTTACATTTGAAAG
82133991 TATGTATAATAAGCATTAATTTACATTTGAA
1 TATGTATAATAAGCATTAATTTACATTTGAA
82134022 CCTAGCATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (33 bp):
TATGTATAATAAGCATTAATTTACATTTGAAAG
Found at i:82135983 original size:39 final size:39
Alignment explanation
Indices: 82135929--82136170 Score: 367
Period size: 39 Copynumber: 6.2 Consensus size: 39
82135919 GAAATGTGTA
* *
82135929 TGGAAATATATCCGGGCTAAAGACCTGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
* * *
82135968 TGGAAATATATCCGGGCTAAAGACCCGTAGGCTTCATGT
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
* *
82136007 TGGAAATGTATCCGGGCTAAAGACCCGCAAGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
* *
82136046 TGGAAATGTATCCGGGCTAAAGACCCACAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
82136085 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
* * *
82136124 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
*
82136163 TGGTAATA
1 TGGAAATA
82136171 AAATTTCGGG
Statistics
Matches: 184, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 184 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TGGAAATATATCCGGGCTAAAGACCCGCAGGCTTCGTGC
Found at i:82138509 original size:68 final size:66
Alignment explanation
Indices: 82138437--82138586 Score: 178
Period size: 64 Copynumber: 2.2 Consensus size: 66
82138427 CATCATGTGT
* * *
82138437 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-T-ACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAAGTGATGACACCA
82138500 TGTAG
62 TGTAG
** * *
82138505 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAATGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTG-ATGACACCATGT
82138570 AG
65 AG
82138572 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
82138587 GATAAACTGG
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
64 27 0.38
65 3 0.04
66 3 0.04
67 25 0.35
68 13 0.18
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAAGTGATGACACCATGTA
G
Found at i:82138542 original size:64 final size:63
Alignment explanation
Indices: 82138461--82138632 Score: 186
Period size: 67 Copynumber: 2.7 Consensus size: 63
82138451 AGACATTATG
* * *
82138461 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTG-TACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * *
82138525 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAATGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GTACTAAGTG--T-ACACCATGTAGACAAGAGAGCTACGAGAT
82138590 AA
62 AA
* * *
82138592 ACTG--GCTAGGGCACATGGGTTGTACTAAGTGTTCACCATGT
1 A-TGTAGCTAGGTCGCATGGG-TGTACTAAGTGTACACCATGT
82138633 GTAAAAGAGA
Statistics
Matches: 90, Mismatches: 12, Indels: 13
0.78 0.10 0.11
Matches are distributed among these distances:
63 8 0.09
64 27 0.30
65 1 0.01
66 21 0.23
67 31 0.34
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGTACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:82138578 original size:67 final size:64
Alignment explanation
Indices: 82138437--82138590 Score: 182
Period size: 67 Copynumber: 2.3 Consensus size: 64
82138427 CATCATGTGT
* * * *
82138437 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC--GAGA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAAGTGTACACCATG
82138502 TAG
62 TAG
* * *
82138505 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAATGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGATACCAAGTG--T-ACACCATGT
82138570 AG
63 AG
82138572 ACAAGAGAGCTACGAGATA
1 ACAAGAGAGCTACGAGATA
82138591 AACTGGCTAG
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
64 27 0.36
65 3 0.04
66 3 0.04
67 29 0.39
68 13 0.17
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGATACCAAGTGTACACCATGTAG
Found at i:82145580 original size:94 final size:94
Alignment explanation
Indices: 82145393--82145614 Score: 245
Period size: 94 Copynumber: 2.3 Consensus size: 94
82145383 TCGTTTGTGC
* * *
82145393 GCTAGTGTAAGACATGTCAGGGACATGCATCGGCCACATTATGAGAGCTAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAATGTAAGACCATGTC
* *
82145458 TGGTACACGGCATCGACATTGAGATGAGA
66 TGGGACACGGCATCGACATTAAGATGAGA
* * *
82145487 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATG-TATC-AATGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCTAATGTAAGACCATGT
* * *
82145549 TTGGGACATGGCATCGGCAAGATTAAG-TGAGA
65 CTGGGACACGGCATC-G--ACATTAAGATGAGA
* *
82145581 GCTAGGGTAAGACAATTTCTGGGACATGGCATCG
1 GCTAGTGTAAGAC-ATGTCTGGGACAT-GCATCG
82145615 ACATTACCCC
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
92 26 0.24
93 3 0.03
94 55 0.50
95 19 0.17
96 6 0.06
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCTAATGTAAGACCATGTC
TGGGACACGGCATCGACATTAAGATGAGA
Found at i:82157213 original size:23 final size:23
Alignment explanation
Indices: 82157187--82157236 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
82157177 ACCCCATTCA
82157187 ATGCAACATA-ATATTATACATGG-
1 ATGCAACATACATA-TA-ACATGGC
82157210 ATGCAACATACATATAACATGGC
1 ATGCAACATACATATAACATGGC
82157233 ATGC
1 ATGC
82157237 TCAAATACAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.24
23 16 0.64
24 3 0.12
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (23 bp):
ATGCAACATACATATAACATGGC
Found at i:82157307 original size:26 final size:27
Alignment explanation
Indices: 82157271--82157332 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
82157261 GAACAAATAT
* *
82157271 GTCATTTTACCTTA-CCGGGTATTACA
1 GTCATTTTACCCTATCAGGGTATTACA
* *
82157297 GTCATTTTACCCTATGAGGGTATTCCA
1 GTCATTTTACCCTATCAGGGTATTACA
82157324 GTCATTTTA
1 GTCATTTTA
82157333 TCACATAAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 13 0.42
27 18 0.58
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATCAGGGTATTACA
Found at i:82157343 original size:27 final size:26
Alignment explanation
Indices: 82157287--82157612 Score: 91
Period size: 27 Copynumber: 12.1 Consensus size: 26
82157277 TTACCTTACC
* *
82157287 GGGTATTACAGTCATTTTA-CCCTATGA
1 GGGTATT-CAGTCATTTTATCAC-ATAA
82157314 GGGTATTCCAGTCATTTTATCACATAA
1 GGGTATT-CAGTCATTTTATCACATAA
* *
82157341 GGGGAAATC-GTCATTTTATCACATAA
1 -GGGTATTCAGTCATTTTATCACATAA
* * * *
82157367 GGGCAAAATC-GTTATTTTATCATATAA
1 GGG--TATTCAGTCATTTTATCACATAA
*
82157394 GGGCAAAATT-A-TCATTTTATCACATAA
1 GGG---TATTCAGTCATTTTATCACATAA
* * *
82157421 GGGAAAAATCA-TCATTTTATCACATGA
1 GGG--TATTCAGTCATTTTATCACATAA
* *
82157448 GGGCAAAATC-GTCATTTTATCACATATA
1 GGG--TATTCAGTCATTTTATCACATA-A
** * **
82157476 GGCAAAATC-GTCATTTTATCACACGA
1 GG-GTATTCAGTCATTTTATCACATAA
** *
82157502 GGACAAAATC-GTCATTTTATCACATAA
1 GG--GTATTCAGTCATTTTATCACATAA
* *
82157529 GGGAATAATCA-TCATTTTATCACATAG
1 GGG--TATTCAGTCATTTTATCACATAA
* * * *
82157556 GGGTAAAATCA-TCGTTATATCACAAAA
1 GGGT--ATTCAGTCATTTTATCACATAA
* *
82157583 GGGCAAAATC-GTCATTTTATCACATAA
1 GGG--TATTCAGTCATTTTATCACATAA
82157610 GGG
1 GGG
82157613 AAAAATCGTC
Statistics
Matches: 249, Mismatches: 31, Indels: 38
0.78 0.10 0.12
Matches are distributed among these distances:
25 4 0.02
26 25 0.10
27 206 0.83
28 14 0.06
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (26 bp):
GGGTATTCAGTCATTTTATCACATAA
Found at i:82157617 original size:27 final size:27
Alignment explanation
Indices: 82157324--82157628 Score: 391
Period size: 27 Copynumber: 11.3 Consensus size: 27
82157314 GGGTATTCCA
*
82157324 GTCATTTTATCACATAAGGG-GAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
82157350 GTCATTTTATCACATAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * *
82157377 GTTATTTTATCATATAAGGGCAAAATT
1 GTCATTTTATCACATAAGGGCAAAATC
* *
82157404 ATCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* *
82157431 ATCATTTTATCACATGAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
82157458 GTCATTTTATCACATATA-GGCAAAATC
1 GTCATTTTATCACATA-AGGGCAAAATC
** *
82157485 GTCATTTTATCACACGAGGACAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
82157512 GTCATTTTATCACATAAGGG-AATAATC
1 GTCATTTTATCACATAAGGGCAA-AATC
* * *
82157539 ATCATTTTATCACATAGGGGTAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
* * * *
82157566 ATCGTTATATCACAAAAGGGCAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
82157593 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTATCACATAAGGGCAAAATC
*
82157620 GTCAATTTA
1 GTCATTTTA
82157629 CCATGTAGGG
Statistics
Matches: 242, Mismatches: 32, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.10
27 216 0.89
28 3 0.01
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (27 bp):
GTCATTTTATCACATAAGGGCAAAATC
Found at i:82165287 original size:25 final size:24
Alignment explanation
Indices: 82165253--82165304 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
82165243 ACGTTCAAGT
82165253 GAGCCATATCAAGA-AGCTCACAAA
1 GAGCCATATCAAGACA-CTCACAAA
*
82165277 GAGCCTATATCAAGACACTCATAAA
1 GAGCC-ATATCAAGACACTCACAAA
82165302 GAG
1 GAG
82165305 TTGCAGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 5 0.20
25 19 0.76
26 1 0.04
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.15
Consensus pattern (24 bp):
GAGCCATATCAAGACACTCACAAA
Found at i:82179921 original size:27 final size:26
Alignment explanation
Indices: 82179887--82179942 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
82179877 ATATATATAG
*
82179887 CTGTTCTGGTGGCCTAGCCACAATAT
1 CTGTTCTGGTGACCTAGCCACAATAT
* * *
82179913 CTGTATCTGGTGACTTTGTCACAATAT
1 CTGT-TCTGGTGACCTAGCCACAATAT
82179940 CTG
1 CTG
82179943 GCAGCCTCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 4 0.16
27 21 0.84
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGTTCTGGTGACCTAGCCACAATAT
Found at i:82182121 original size:25 final size:25
Alignment explanation
Indices: 82182090--82182160 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
82182080 GAACTAGAAT
** * *
82182090 CAGAATCAGGATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGGTAA
*
82182115 CAGAATCAAAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGGTAA
*
82182140 CAGAATCAAAATCAAAATCAG
1 CAGAATCAAAATCAGAATCAG
82182161 TATCAGGTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
CAGAATCAAAATCAGAATCAGGTAA
Found at i:82182153 original size:31 final size:31
Alignment explanation
Indices: 82182118--82182181 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
82182108 TAGGTGACAG
*
82182118 AATCAAAATCAGTATCAGGTAACAGAATCAA
1 AATCAAAATCAGTATCAGGTAACAGAATAAA
82182149 AATCAAAATCAGTATCAGGTAACAGAATAAA
1 AATCAAAATCAGTATCAGGTAACAGAATAAA
82182180 AA
1 AA
82182182 ATCAGAATGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.55, C:0.14, G:0.12, T:0.19
Consensus pattern (31 bp):
AATCAAAATCAGTATCAGGTAACAGAATAAA
Found at i:82182181 original size:25 final size:26
Alignment explanation
Indices: 82182100--82182186 Score: 86
Period size: 31 Copynumber: 3.2 Consensus size: 26
82182090 CAGAATCAGG
* * * *
82182100 ATCAGAATTAGGTGACAGAAT-CAAA
1 ATCAGTATCAGGTAACAGAATAAAAA
82182125 ATCAGTATCAGGTAACAGAATCAAAATCAAA
1 ATCAGTATCAGGTAACAGAAT---AA--AAA
82182156 ATCAGTATCAGGTAACAGAATAAAAA
1 ATCAGTATCAGGTAACAGAATAAAAA
82182182 ATCAG
1 ATCAG
82182187 AATGTGAATG
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
25 18 0.35
26 8 0.15
28 2 0.04
31 24 0.46
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.20
Consensus pattern (26 bp):
ATCAGTATCAGGTAACAGAATAAAAA
Found at i:82182368 original size:27 final size:26
Alignment explanation
Indices: 82182326--82182427 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 26
82182316 GCTCAGTTAT
* *
82182326 CAGATATTGTGATAGAGTCACCAGATA
1 CAGATATTGTGGTAGAGCCACCAGA-A
82182353 CAGATATTGTGGTAGAGCCACCAGAA
1 CAGATATTGTGGTAGAGCCACCAGAA
* * *
82182379 CAAATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGTAGAGCCACCAG-AA
*
82182407 CAGATAATGTGGCTA-AGCCAC
1 CAGATATTGTGG-TAGAGCCAC
82182428 TTAACAAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.09
27 50 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGGTAGAGCCACCAGAA
Found at i:82182614 original size:22 final size:22
Alignment explanation
Indices: 82182586--82182650 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
82182576 GCAAATACGT
*
82182586 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
82182608 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
82182630 TTGACACAAACCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
82182651 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:82183134 original size:27 final size:27
Alignment explanation
Indices: 82183095--82183891 Score: 1078
Period size: 27 Copynumber: 29.6 Consensus size: 27
82183085 TACCCCAAAA
* *
82183095 GGTATCTCGGTAATTCCACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
** *
82183122 GGTATTTTAGTAATTCTACCCTACATG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * * *
82183149 CGTATTGCGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
82183176 GGTATTACGATAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
82183203 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183230 GGTATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
82183257 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* **
82183284 GGTATTCCGGTAATTCTACCCTGTAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
**
82183311 GGTA-TTCTGGTAATTCTACCCTGTAGG
1 GGTATTTC-GGTAATTCTACCCTACAGG
* *
82183338 GGTATTTCGGCAATTCTACTCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
82183365 GGTATTACTGTAATTCTACCTTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183392 GGTATTGCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183419 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183446 GG-ATTTTGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
82183472 GGTATTTTGGTAATTCTACCCTAGAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
82183499 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * **
82183526 GGTATTGCGGTACTTCTACCCTGTAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183553 GGTATTGT-AGTAATTCTACCCTACAGG
1 GGTATT-TCGGTAATTCTACCCTACAGG
* * *
82183580 GGCATTTTGGCAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183607 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
82183634 GGTATTCCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183661 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
82183688 GGTATTTCCGTAATTCTATCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183715 GGTATTTCGGTAATTCTACCCTATAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
82183742 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183769 GGTATTTCAGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
*
82183796 GGTATTGCGGTAATTCTACCCTACAGG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
82183823 GGTATTGCGGTAATTCTACCCTATATG
1 GGTATTTCGGTAATTCTACCCTACAGG
* * *
82183850 GGTATTACGGTATTTCTACCCTACAAG
1 GGTATTTCGGTAATTCTACCCTACAGG
* *
82183877 GGTATTCCGATAATT
1 GGTATTTCGGTAATT
82183892 TTGTAAATCG
Statistics
Matches: 682, Mismatches: 83, Indels: 10
0.88 0.11 0.01
Matches are distributed among these distances:
26 27 0.04
27 652 0.96
28 3 0.00
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTATTTCGGTAATTCTACCCTACAGG
Found at i:82184223 original size:27 final size:27
Alignment explanation
Indices: 82183930--82184216 Score: 254
Period size: 27 Copynumber: 10.6 Consensus size: 27
82183920 TGTAAATCAA
* ***
82183930 GGGTACTTTGGTAATTTTACAGGTC-G
1 GGGTATTTTGGTAATTTTACAAACCAG
** **
82183956 AGGGTATTTTAATAATTTTACAAGTC-G
1 -GGGTATTTTGGTAATTTTACAAACCAG
** * *
82183983 AGGGTATTTCAGTAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTACAAACCAG
* * * *
82184011 GGATATTTTTGTAATTTTACTAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * * * *
82184038 GGTTACTTTGATCATTTTCCAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82184065 AGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82184092 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82184119 GGGTATTTTTGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82184146 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
**
82184173 GGGTATTTTATTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82184200 GGGTATTTTGCTAATTT
1 GGGTATTTTGGTAATTT
82184217 GGTAAACTAA
Statistics
Matches: 211, Mismatches: 48, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
27 210 1.00
28 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:82186199 original size:6 final size:6
Alignment explanation
Indices: 82186168--82186258 Score: 62
Period size: 6 Copynumber: 14.8 Consensus size: 6
82186158 AAGAAACATT
* * *
82186168 ATCAGA A-CTAGA ACCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
82186217 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
82186259 GTAACAGAAT
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.06
6 55 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:82186213 original size:25 final size:25
Alignment explanation
Indices: 82186182--82186252 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
82186172 GAACTAGAAC
* *
82186182 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
*
82186207 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
82186232 CAGAATCAAAATCAGAATCAG
1 CAGAATCAGAATCAGAATCAG
82186253 TATCAGGTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:82186245 original size:31 final size:32
Alignment explanation
Indices: 82186210--82186281 Score: 128
Period size: 31 Copynumber: 2.3 Consensus size: 32
82186200 TAGGTGACAG
*
82186210 AATCAGAATCAGTATCAGGTAACAGAAT-CAA
1 AATCAGAATCAGTATCAGGTAACAGAATAAAA
82186241 AATCAGAATCAGTATCAGGTAACAGAATAAAA
1 AATCAGAATCAGTATCAGGTAACAGAATAAAA
82186273 AATCAGAAT
1 AATCAGAAT
82186282 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 28 0.72
32 11 0.28
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.19
Consensus pattern (32 bp):
AATCAGAATCAGTATCAGGTAACAGAATAAAA
Found at i:82186461 original size:27 final size:26
Alignment explanation
Indices: 82186418--82186519 Score: 107
Period size: 27 Copynumber: 3.8 Consensus size: 26
82186408 GCTCAGTTAT
* *
82186418 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
*
82186445 CAGATATTGTGGTAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
82186471 TAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
*
82186499 CAGATAATGTGGCTA-AGCCAC
1 CAGATATTGTGGC-AGAGCCAC
82186520 TTAACAAAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.09
27 50 0.78
28 8 0.12
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:82186706 original size:22 final size:21
Alignment explanation
Indices: 82186678--82186742 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
82186668 GCAAATATGT
82186678 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
82186700 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
82186722 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
82186743 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:82187226 original size:27 final size:27
Alignment explanation
Indices: 82187169--82187713 Score: 743
Period size: 27 Copynumber: 20.3 Consensus size: 27
82187159 GGGGCAAAAT
* * * *
82187169 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
82187195 GGTAATTCCAGCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82187222 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
82187249 GATAATTCTACCCTACATGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82187276 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82187303 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82187330 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82187357 AGTAATTCTACCCTACCGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82187384 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82187411 TGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82187438 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
82187465 GGTAATTTTACCCTACAGAAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
82187492 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
82187519 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
82187546 GATAGTTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
82187573 GGTAATTCTACGCTACAGGGGTGTTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82187600 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82187627 GGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
82187654 GTTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
82187681 GGTAATTCTACCCTATA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
82187707 GGTAATT
1 GGTAATT
82187714 TTGTAAATCG
Statistics
Matches: 460, Mismatches: 58, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
26 28 0.06
27 432 0.94
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:82187764 original size:27 final size:27
Alignment explanation
Indices: 82187697--82188092 Score: 119
Period size: 27 Copynumber: 14.7 Consensus size: 27
82187687 TCTACCCTAT
*
82187697 AGGGTA-TTTCGGTAATTTTGTAAATCG
1 AGGGTACTTT-GGTAATTTTGTAAATCA
**** *
82187724 AGGGTAAAACGGTAGTTTTGTAAATCA
1 AGGGTACTTTGGTAATTTTGTAAATCA
** *
82187751 AGGGTACTTTGGTAATTTTACAAGTCGA
1 AGGGTACTTTGGTAATTTTGTAAATC-A
* ** *
82187779 A-GGTACTTTGGTAATTTTATAGGTCG
1 AGGGTACTTTGGTAATTTTGTAAATCA
* *** *
82187805 AGGGTA-TTTCAGTAATTTCACAAAT-T
1 AGGGTACTTT-GGTAATTTTGTAAATCA
* **
82187831 AGGGATATTTTGGTAATTTTACAAA-CTA
1 AGGG-TACTTTGGTAATTTTGTAAATC-A
* * * **
82187859 GGGGTATTTTGATAATTTTACAAA-CTA
1 AGGGTACTTTGGTAATTTTGTAAATC-A
* * * **
82187886 GGGGTATTTTTGTAATTTTACAAA-CTA
1 AGGGTACTTTGGTAATTTTGTAAATC-A
* * *
82187913 GGGGTATTTTGGTAATTTTATAAA-CAA
1 AGGGTACTTTGGTAATTTTGTAAATC-A
* * **
82187940 AGGGTATTTTAGTAATTTTACAAA-CTA
1 AGGGTACTTTGGTAATTTTGTAAATC-A
* * *
82187967 GGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTACTTTGGTAATTTTGTAAATCA
* ** *
82187994 ATGGTA-TTATGGTAATTTTACAAACCA
1 AGGGTACTT-TGGTAATTTTGTAAATCA
* * * * *
82188021 GGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTACTTTGGTAATTTTGTAAATCA
* * ** *
82188048 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTACTTTGGTAATTTTGTAAATCA
* *
82188075 GGGGTATTTTGGTAATTT
1 AGGGTACTTTGGTAATTT
82188093 GATAAACTAA
Statistics
Matches: 304, Mismatches: 54, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
26 10 0.03
27 283 0.93
28 11 0.04
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTACTTTGGTAATTTTGTAAATCA
Found at i:82187864 original size:54 final size:54
Alignment explanation
Indices: 82187831--82188099 Score: 394
Period size: 54 Copynumber: 5.0 Consensus size: 54
82187821 TTCACAAATT
* * * *
82187831 AGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTACAAACTA
1 AGGG-TATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* * *
82187886 GGGGTATTTTTGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
*
82187940 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* * * * *
82187994 ATGGTATTATGGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
* *
82188048 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTGATAAAC
1 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAAC
82188100 TAAAGTATTC
Statistics
Matches: 194, Mismatches: 20, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
54 191 0.98
55 3 0.02
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:82188099 original size:27 final size:27
Alignment explanation
Indices: 82187806--82188092 Score: 349
Period size: 27 Copynumber: 10.6 Consensus size: 27
82187796 TATAGGTCGA
** * **
82187806 GGGTATTTCAGTAATTTCACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82187833 GGATATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82187860 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82187887 GGGTATTTTTGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82187914 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82187941 GGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
82187968 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
82187995 TGGTATTATGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
82188022 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
82188049 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
82188076 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
82188093 GATAAACTAA
Statistics
Matches: 223, Mismatches: 37, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 223 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:82194965 original size:40 final size:40
Alignment explanation
Indices: 82194918--82195141 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
82194908 CTTGCACAAG
* * *
82194918 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
82194958 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
82194998 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
82195038 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * *
82195078 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAA-
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* *
82195118 ACCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
82195142 CATTCGAATA
Statistics
Matches: 158, Mismatches: 23, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 148 0.94
41 9 0.06
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:82195013 original size:80 final size:80
Alignment explanation
Indices: 82194882--82195141 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
82194872 CTCAAGAAAT
* * * * * * * *
82194882 CTTCGGGATTTAG-CCGGATGTAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
82194945 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
82194960 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
82195024 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
82195040 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
82195105 CACCTAGCACAAA-AC
66 CA-CTAGCACAAATGC
82195120 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
82195142 CATTCGAATA
Statistics
Matches: 153, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 116 0.76
81 10 0.07
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:82203133 original size:40 final size:40
Alignment explanation
Indices: 82203087--82203311 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
82203077 CTTGCACAAG
* * *
82203087 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
82203127 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
82203167 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
82203207 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
82203247 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
82203288 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
82203312 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:82203182 original size:80 final size:80
Alignment explanation
Indices: 82203051--82203311 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
82203041 CTCAAGAAAT
* * * * * * *
82203051 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
82203114 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
82203129 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
82203193 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
82203209 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
82203274 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
82203290 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
82203312 CATTCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:82205097 original size:39 final size:39
Alignment explanation
Indices: 82205054--82205132 Score: 124
Period size: 39 Copynumber: 2.0 Consensus size: 39
82205044 AGTGGTCTCG
*
82205054 AAACCACTTTCTAG-CTAGGGTCAATTTAGGGCTGTCACA
1 AAACCACTTTC-AGACTAGGGTCAATTTAGGGCTATCACA
*
82205093 AAACCACTTTCCGACTAGGGTCAATTTAGGGCTATCACA
1 AAACCACTTTCAGACTAGGGTCAATTTAGGGCTATCACA
82205132 A
1 A
82205133 CTCTCCCCCA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 1 0.03
39 36 0.97
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (39 bp):
AAACCACTTTCAGACTAGGGTCAATTTAGGGCTATCACA
Found at i:82214741 original size:40 final size:40
Alignment explanation
Indices: 82214695--82214879 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
82214685 CTTGCACAAG
* * *
82214695 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
82214735 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
82214775 ACCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * *
82214815 GCCTTCGGATCTTAGTCCGGTTATATTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
82214856 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
82214880 CATTCGAATA
Statistics
Matches: 120, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 89 0.74
41 30 0.25
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:82214791 original size:80 final size:81
Alignment explanation
Indices: 82214659--82214879 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 81
82214649 CTCAAGAAAT
* * *
82214659 CTTCGGGAT-TTAG-CCGGATATAA-CTA-CTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGT
1 CTTC-GGATCTTAGCCCGGATATAATC-ACCTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
* *
82214719 GGTC-ACTAGCATAAATGC
64 AG-CAACTAGCACAAATGC
* * *
82214737 CTTCGGGTTTTAGCCCGGATATAATC-GCTAGCACAAATA-CCTTCGGGTCTTAGCCCGGATATA
1 CTTCGGATCTTAGCCCGGATATAATCACCTAGCACAAA-AGCCTTCGGGTCTTAGCCCGGATATA
*
82214800 GCAACTAGCACGAATGC
65 GCAACTAGCACAAATGC
* * * *
82214817 CTTCGGATCTTAGTCCGGTTATATTCACCTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATATAATCACCTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
82214880 CATTCGAATA
Statistics
Matches: 120, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
77 3 0.03
78 8 0.07
79 17 0.14
80 60 0.50
81 32 0.27
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (81 bp):
CTTCGGATCTTAGCCCGGATATAATCACCTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG
CAACTAGCACAAATGC
Found at i:82214861 original size:41 final size:40
Alignment explanation
Indices: 82214659--82214879 Score: 193
Period size: 40 Copynumber: 5.5 Consensus size: 40
82214649 CTCAAGAAAT
* * * *
82214659 CTTCGGGAT-TTAG-CCGGATATAACTACTTGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATATCAACTAGCACAAAAGC
* * * *
82214697 CTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-ATCAACTAGCACAAAAGC
* *
82214737 CTTCGGGTTTTAGCCCGGATATAATC-GCTAGCACAAATA-C
1 CTTCGGGTCTTAGCCCGGATAT-ATCAACTAGCACAAA-AGC
* * *
82214777 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAAAGC
* * * *
82214817 CTTCGGATCTTAGTCCGGTTATATTCACCTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATA-TCAACTAGCACAAAAGC
*
82214858 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
82214880 CATTCGAATA
Statistics
Matches: 146, Mismatches: 29, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
37 1 0.01
38 11 0.08
39 15 0.10
40 88 0.60
41 31 0.21
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATATCAACTAGCACAAAAGC
Found at i:82218189 original size:43 final size:43
Alignment explanation
Indices: 82218033--82218190 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
82218023 ATGTATTATT
* *
82218033 GTGTAAGACCACATCTGGGACGTTGGCATCGAT-TTGAGATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTAC
** * * **** *
82218077 GTGTAAGACCATTTATGGGACATCAAAATC-ATATTTGATTTC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAC
** * *
82218119 GTGTAAGACCTTGTCTAGTACAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCACGTCTGGGAC-GTTGGCATCGATATTTGATTAC
*
82218162 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
82218191 TGTAAGAGCT
Statistics
Matches: 84, Mismatches: 26, Indels: 9
0.71 0.22 0.08
Matches are distributed among these distances:
42 23 0.27
43 37 0.44
44 24 0.29
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAC
Found at i:82218353 original size:16 final size:16
Alignment explanation
Indices: 82218334--82218369 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
82218324 AGAAGTAAGT
82218334 ATATTTGCAAGTGGTG
1 ATATTTGCAAGTGGTG
82218350 ATATTTGCAAGTGGTG
1 ATATTTGCAAGTGGTG
82218366 ATAT
1 ATAT
82218370 GTGATATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.39
Consensus pattern (16 bp):
ATATTTGCAAGTGGTG
Found at i:82223038 original size:20 final size:20
Alignment explanation
Indices: 82223013--82223058 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
82223003 TATCACAAAC
*
82223013 CACATAGTTCATATCCATTT
1 CACATAGTTCATATACATTT
82223033 CACATAGTTCATATACATTT
1 CACATAGTTCATATACATTT
82223053 CACATA
1 CACATA
82223059 CTCTCAATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (20 bp):
CACATAGTTCATATACATTT
Found at i:82223372 original size:42 final size:41
Alignment explanation
Indices: 82223274--82223438 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 41
82223264 TGTACAATGC
* ** * *
82223274 CAACGTCCTAGAGGTGGTCTTACATGTAATCAAATATCGATG
1 CAACGTCCCAGACATGGTCTTACACGAAATCAAATA-CGATG
* * *
82223316 CCACTGTCACAGACAAGGTCTTACACGAAATCAAATACGATG
1 CAAC-GTCCCAGACATGGTCTTACACGAAATCAAATACGATG
* * * *
82223358 TCGACATCCCAGACATGGTGTTACACGTAAATCTCAAAT-CAATG
1 -CAACGTCCCAGACATGGTCTTACACG-AAA--TCAAATACGATG
*
82223402 CCAATGTCCC-GTACATGGTCTTACACGAAATCAAATA
1 -CAACGTCCCAG-ACATGGTCTTACACGAAATCAAATA
82223439 TCGAAAATCC
Statistics
Matches: 97, Mismatches: 19, Indels: 14
0.75 0.15 0.11
Matches are distributed among these distances:
41 6 0.06
42 26 0.27
43 35 0.36
44 24 0.25
45 6 0.06
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (41 bp):
CAACGTCCCAGACATGGTCTTACACGAAATCAAATACGATG
Found at i:82227198 original size:27 final size:26
Alignment explanation
Indices: 82227144--82227199 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
82227134 AGCATGGCTG
*
82227144 CCAGAACAGATATTGTGACAAAGTCA
1 CCAGAACAGATATTGTGACAAAGCCA
* *
82227170 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAAAGCCA
82227197 CCA
1 CCA
82227200 AAATGCTTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 5 0.19
27 21 0.81
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAAAGCCA
Found at i:82233273 original size:23 final size:22
Alignment explanation
Indices: 82233237--82233281 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
82233227 TCTCACTAGG
*
82233237 CCATTTATGCACATCAAAACATA
1 CCATTTATGAACAT-AAAACATA
* *
82233260 CCATTTTTGAACATAAAGCATA
1 CCATTTATGAACATAAAACATA
82233282 TACCAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (22 bp):
CCATTTATGAACATAAAACATA
Found at i:82237202 original size:18 final size:18
Alignment explanation
Indices: 82237179--82237241 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
82237169 CAGCTCCGAT
82237179 GAGCTTCAGTTAGCCTTC
1 GAGCTTCAGTTAGCCTTC
* *
82237197 GAGCTTCCGTTTAGCACTTGT
1 GAGCTTCAG-TTAGC-CTT-C
* *
82237218 GTGCTTCAGCTAG-CTTC
1 GAGCTTCAGTTAGCCTTC
82237235 GAGCTTC
1 GAGCTTC
82237242 CATTTAGCAC
Statistics
Matches: 35, Mismatches: 7, Indels: 7
0.71 0.14 0.14
Matches are distributed among these distances:
17 6 0.17
18 11 0.31
19 5 0.14
20 6 0.17
21 7 0.20
ACGTcount: A:0.14, C:0.27, G:0.24, T:0.35
Consensus pattern (18 bp):
GAGCTTCAGTTAGCCTTC
Done.