Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 243 of 345
Found at i:82237291 original size:39 final size:39
Alignment explanation
Indices: 82237181--82237319 Score: 172
Period size: 39 Copynumber: 3.6 Consensus size: 39
82237171 GCTCCGATGA
* *
82237181 GCTTCAGTTAGCCTTCGAGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGCTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
* *
82237220 GCTTCAGCTAG-CTTCGAGCTTCCATTTAGCACTTTTGT
1 GCTTCAGCTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
* * * * *
82237258 GCTTTAGTTAGCCTTTGGGCTTCCGTTTAGCACTTATCT
1 GCTTCAGCTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
* *
82237297 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGCTAGCCTTCGAGCTTC
82237320 AAATCACTGT
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 34 0.40
39 51 0.60
ACGTcount: A:0.14, C:0.26, G:0.22, T:0.39
Consensus pattern (39 bp):
GCTTCAGCTAGCCTTCGAGCTTCCGTTTAGCACTTATGT
Found at i:82242149 original size:30 final size:30
Alignment explanation
Indices: 82242104--82242163 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82242094 ATTTAATACG
*
82242104 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
82242134 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
82242164 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:82247418 original size:21 final size:21
Alignment explanation
Indices: 82247394--82247434 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
82247384 TCATCAGATC
*
82247394 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
82247415 TACAGGTTGAGGAATCGGGG
1 TACACCTTGAGGAATCGGGG
82247435 AGGTGGGGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.17, G:0.41, T:0.20
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:82253855 original size:30 final size:29
Alignment explanation
Indices: 82253798--82253856 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
82253788 AATTGGAAGT
* *
82253798 TTTGGCACTAAGTTACGATTTAGACTAGC
1 TTTGCCACTAAGTTACGATTTAAACTAGC
82253827 TTTGCCACTAAGTGTGA-GATTTAAACTAGC
1 TTTGCCACTAAGT-T-ACGATTTAAACTAGC
82253857 CTCGGCTACT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 12 0.46
30 13 0.50
31 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (29 bp):
TTTGCCACTAAGTTACGATTTAAACTAGC
Found at i:82258722 original size:30 final size:30
Alignment explanation
Indices: 82258688--82258748 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
82258678 TTCCCGAGCC
82258688 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
82258718 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
82258748 T
1 T
82258749 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:82262508 original size:28 final size:28
Alignment explanation
Indices: 82262477--82262553 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
82262467 TTTTTTAGGC
* *
82262477 CCATTAAGCCCAATTCACATTCATATGG
1 CCATTAGGCCCAAATCACATTCATATGG
82262505 CCATTAGGCCCAAAGT-ACATTCATATGG
1 CCATTAGGCCCAAA-TCACATTCATATGG
*
82262533 CCACTAGGCCCAAATCACATT
1 CCATTAGGCCCAAATCACATT
82262554 TATAGTCATG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
27 1 0.02
28 42 0.95
29 1 0.02
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (28 bp):
CCATTAGGCCCAAATCACATTCATATGG
Found at i:82264820 original size:39 final size:39
Alignment explanation
Indices: 82264777--82264892 Score: 205
Period size: 39 Copynumber: 3.0 Consensus size: 39
82264767 CTGGACATAT
* *
82264777 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
82264816 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
*
82264855 TTCCAGCACATAACCTGCGGACCCTAAGTCCGGATATA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATA
82264893 CATCACTGAA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAA
Found at i:82272093 original size:28 final size:28
Alignment explanation
Indices: 82272029--82272095 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
82272019 CTATTAAGCC
82272029 CAAATCACATTCATATAGCCACTAGGCG
1 CAAATCACATTCATATAGCCACTAGGCG
* * *
82272057 CAAAGCACATTCATATGGCTACTAGGC-
1 CAAATCACATTCATATAGCCACTAGGCG
82272084 CAAAATCACATT
1 C-AAATCACATT
82272096 TACAATCACG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.37, C:0.27, G:0.13, T:0.22
Consensus pattern (28 bp):
CAAATCACATTCATATAGCCACTAGGCG
Found at i:82278945 original size:24 final size:24
Alignment explanation
Indices: 82278918--82278966 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
82278908 ATGATTTACA
82278918 AAATTTCCATGCAAGTTTATAATC
1 AAATTTCCATGCAAGTTTATAATC
*
82278942 AAATTTCTATGCAAGTTTATAATC
1 AAATTTCCATGCAAGTTTATAATC
82278966 A
1 A
82278967 TGTGTGATGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (24 bp):
AAATTTCCATGCAAGTTTATAATC
Found at i:82294217 original size:30 final size:30
Alignment explanation
Indices: 82294169--82294237 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
82294159 TACACGGGCA
* * **
82294169 GACACACGGGCTTGTGTCTAGATTGTGTGT
1 GACACATGGGCATGTGTCTAGACCGTGTGT
*
82294199 GGCACATGGGCATGTGTCTAGACCGTGTGT
1 GACACATGGGCATGTGTCTAGACCGTGTGT
82294229 GACACATGG
1 GACACATGG
82294238 CTTGGTACAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.19, C:0.19, G:0.35, T:0.28
Consensus pattern (30 bp):
GACACATGGGCATGTGTCTAGACCGTGTGT
Found at i:82303218 original size:25 final size:24
Alignment explanation
Indices: 82303190--82303237 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
82303180 CCAGAGGACC
*
82303190 AATCATATAACTCCTCACAATGATT
1 AATCACATAA-TCCTCACAATGATT
* *
82303215 AATCACATAATCTTCATAATGAT
1 AATCACATAATCCTCACAATGAT
82303238 AATAATAAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.42, C:0.21, G:0.04, T:0.33
Consensus pattern (24 bp):
AATCACATAATCCTCACAATGATT
Found at i:82307818 original size:40 final size:40
Alignment explanation
Indices: 82307757--82307867 Score: 161
Period size: 40 Copynumber: 2.8 Consensus size: 40
82307747 TATTCGGATG
* *
82307757 ATAACCGGGCTAAGTCTCGAAGGCATTTGTGCTAATGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACT
* * *
82307797 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACT
82307837 ATAACCGGGCTAAGTCCCGAAGGCATTTGTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTG
82307868 TGACACCCCT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
39 1 0.02
40 61 0.97
41 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAATGACT
Found at i:82310712 original size:47 final size:47
Alignment explanation
Indices: 82310612--82310892 Score: 454
Period size: 47 Copynumber: 5.9 Consensus size: 47
82310602 ATATATGAGA
82310612 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
82310661 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
82310708 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
82310755 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * *
82310802 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
82310849 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
82310893 TCCCGAAGGG
Statistics
Matches: 222, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 193 0.87
49 29 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:82311066 original size:36 final size:37
Alignment explanation
Indices: 82311011--82311088 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
82311001 CCGAGCTCTA
* *
82311011 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
82311047 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
82311084 AAGAC
1 AAGAC
82311089 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:82312506 original size:40 final size:40
Alignment explanation
Indices: 82312451--82312608 Score: 230
Period size: 40 Copynumber: 4.0 Consensus size: 40
82312441 GGGTGTTACA
*
82312451 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCAAAGGC
1 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
*
82312491 ATTTGTGCGAGTTACTATAACCAGGCTAAGTCCCGAAGGC
1 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
*
82312531 AATTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
1 ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
* * **
82312571 ATTTGAGCGAG-TAGCTATATCC-GGCTAAACCCCGAAGG
1 ATTTGTGCGAGTTA-CTATAACCGGGCTAAGTCCCGAAGG
82312609 TACTTGGTTG
Statistics
Matches: 108, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
39 16 0.15
40 92 0.85
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGC
Found at i:82315723 original size:18 final size:18
Alignment explanation
Indices: 82315700--82315750 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
82315690 CAGTCAAGTT
82315700 GTTTATTCCATAAATACA
1 GTTTATTCCATAAATACA
*
82315718 GTTTATTCCATAAGTACA
1 GTTTATTCCATAAATACA
*
82315736 GCTTATTCCATAAAT
1 GTTTATTCCATAAAT
82315751 TTACCCATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.39
Consensus pattern (18 bp):
GTTTATTCCATAAATACA
Found at i:82316685 original size:48 final size:48
Alignment explanation
Indices: 82316617--82316821 Score: 183
Period size: 48 Copynumber: 4.3 Consensus size: 48
82316607 CAAAGTCAAG
*
82316617 GCCATGTCCCAGACATGGTCTTACACTGACTTTCATATATCTAGGCCGAT
1 GCCATGT-CCAGACA-GGTCTTACACTGACTTTCATATATCGAGGCCGAT
* * * *
82316667 GCCATGTCCAGACAGGTCTTACACTGGCTTTCATCTATCGATGTCGAT
1 GCCATGTCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGAT
* * * * *
82316715 GCCATGTCCAGGACAGGTCTTACACTGAC--ACACA-A-C-AAGCTGAC
1 GCCATGTCCA-GACAGGTCTTACACTGACTTTCATATATCGAGGCCGAT
* *
82316759 GCCATGTCCCAGACAGATCTTACACT-AGCTTGT-ATATCTCGAGGCCGAT
1 GCCATGT-CCAGACAGGTCTTACACTGA-CTT-TCATATATCGAGGCCGAT
82316808 G-CATGTCCTAGACA
1 GCCATGTCC-AGACA
82316822 TGTTGTAACA
Statistics
Matches: 125, Mismatches: 20, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 26 0.21
45 4 0.03
46 3 0.02
47 4 0.03
48 50 0.40
49 30 0.24
50 7 0.06
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (48 bp):
GCCATGTCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGAT
Found at i:82318416 original size:39 final size:39
Alignment explanation
Indices: 82318359--82318454 Score: 156
Period size: 39 Copynumber: 2.5 Consensus size: 39
82318349 CGGGACTTTA
* *
82318359 AGCCCGAATATAATACCAGCACAAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTT
*
82318398 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGGCTT
1 AGCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTT
*
82318437 AGCCCAGATATAACACCA
1 AGCCCGGATATAACACCA
82318455 AATCATATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.31, C:0.30, G:0.21, T:0.18
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTT
Found at i:82320464 original size:19 final size:19
Alignment explanation
Indices: 82320440--82320480 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
82320430 GTTATAATAT
*
82320440 TAATATTCCTTTAATATTA
1 TAATATTCATTTAATATTA
*
82320459 TAATATTCATTTCATATTA
1 TAATATTCATTTAATATTA
82320478 TAA
1 TAA
82320481 AACAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATATTCATTTAATATTA
Found at i:82321622 original size:20 final size:20
Alignment explanation
Indices: 82321597--82321635 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
82321587 ACAGTTTCAA
82321597 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
82321617 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
82321636 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:82328159 original size:20 final size:20
Alignment explanation
Indices: 82328122--82328172 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
82328112 CTATAGCAAC
82328122 TCACAA-TTT-CAA-TTATT
1 TCACAACTTTACAACTTATT
82328139 TCAC-ACTTTTACAACTTATT
1 TCACAAC-TTTACAACTTATT
*
82328159 TTACAACTTTACAA
1 TCACAACTTTACAA
82328173 AATAGCCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 1 0.04
17 4 0.14
18 3 0.11
19 3 0.11
20 15 0.54
21 2 0.07
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (20 bp):
TCACAACTTTACAACTTATT
Found at i:82330701 original size:20 final size:20
Alignment explanation
Indices: 82330660--82330701 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
82330650 AGCACATGTA
* *
82330660 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
82330680 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
82330700 TT
1 TT
82330702 GATTTTAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:82341170 original size:53 final size:53
Alignment explanation
Indices: 82341092--82341194 Score: 129
Period size: 53 Copynumber: 1.9 Consensus size: 53
82341082 AGATCCCATG
* * *
82341092 TAAGACCATGCTAAGGCATGACAATGGTGAGTTCATAAA-GAAAGGATACCACA
1 TAAGACCATGCTAAGACATGACAATGGTAAGTTCAAAAAGGAAA-GATACCACA
* *
82341145 TAAGACCATG-TCAAGACATGGCAATGGTAAGTTTAAAAAGGAAAGATACC
1 TAAGACCATGCT-AAGACATGACAATGGTAAGTTCAAAAAGGAAAGATACC
82341195 CATGTATCCT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
52 1 0.02
53 38 0.88
54 4 0.09
ACGTcount: A:0.43, C:0.16, G:0.22, T:0.19
Consensus pattern (53 bp):
TAAGACCATGCTAAGACATGACAATGGTAAGTTCAAAAAGGAAAGATACCACA
Found at i:82342481 original size:43 final size:43
Alignment explanation
Indices: 82342388--82342470 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
82342378 TCCGTTTAGA
* *
82342388 AAAACTCCCATGTAACATTTTCCCTTGGTACAACAGAAATCAG
1 AAAATTCCCATGTAACATTCTCCCTTGGTACAACAGAAATCAG
*
82342431 AAAATTCCCATGTAACATTCTCCCTTTGTACAACAGAAAT
1 AAAATTCCCATGTAACATTCTCCCTTGGTACAACAGAAAT
82342471 TAGAGTATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (43 bp):
AAAATTCCCATGTAACATTCTCCCTTGGTACAACAGAAATCAG
Found at i:82357027 original size:25 final size:25
Alignment explanation
Indices: 82356999--82357047 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
82356989 TCAAGCGAGG
82356999 TATATCAGGA-AGCTCACAAAGAGCC
1 TATATCAGGACA-CTCACAAAGAGCC
* *
82357024 TATATCATGACACTCACAAGGAGC
1 TATATCAGGACACTCACAAAGAGC
82357048 TGTTGTATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 20 0.95
26 1 0.05
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.18
Consensus pattern (25 bp):
TATATCAGGACACTCACAAAGAGCC
Found at i:82366933 original size:46 final size:46
Alignment explanation
Indices: 82366866--82367036 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
82366856 ACCCGCCCAC
* * *
82366866 AAGCGAACTCGGACTCAACTCAGCGAGCTCGGGCGTTGGAATCCAT
1 AAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTGGAATCCAT
* * *
82366912 AAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T
1 AAGCGAACTCGGACTCAACTCAACGAGTTCGG--GCATTG-GA-ATCCAT
* * * * *
82366960 CA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT
1 AAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTGGAATCCAT
*
82367005 AAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 AAGCGAACTCGGACTCAACTCAACGAGTTCGG
82367037 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 2 0.02
44 1 0.01
45 4 0.04
46 57 0.56
47 28 0.27
48 6 0.06
49 2 0.02
50 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
AAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTGGAATCCAT
Found at i:82367028 original size:93 final size:93
Alignment explanation
Indices: 82366869--82367040 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
82366859 CGCCCACAAG
* * * * *
82366869 CGAACTCGGACTCAACTCAGCGAGCTCGGGCGTTGGAATCCATAAGCGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGAATCCATAAGCGAACTCGGACTCAACTCA
82366934 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
82366962 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGAATCCATAAGCGAACTCGGACTCAACTCA
82367027 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
82367041 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGAATCCATAAGCGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82367056 original size:46 final size:44
Alignment explanation
Indices: 82366916--82367056 Score: 126
Period size: 46 Copynumber: 3.0 Consensus size: 44
82366906 ATCCATAAGC
*
82366916 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * * *
82366963 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTC-G-GATGC-CAACCATCTAGT
82367009 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
82367055 GA
1 GA
82367057 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
44 9 0.12
45 2 0.03
46 31 0.40
47 29 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:82373834 original size:30 final size:30
Alignment explanation
Indices: 82373789--82373848 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
82373779 ATTTAATATG
82373789 AACTTTGGCAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTT-CCCCTA
* *
82373819 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGCAAAATTACACTTTTTCCCCTA
82373849 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTTCCCCTA
Found at i:82376294 original size:16 final size:14
Alignment explanation
Indices: 82376248--82376308 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
82376238 TTGCCTAAAC
*
82376248 AAAAA-AAAAGGAA
1 AAAAAGAAAAAGAA
* *
82376261 AACAGGAAAAA-AA
1 AAAAAGAAAAAGAA
*
82376274 TAAAAGATAAAAGAA
1 AAAAAGA-AAAAGAA
82376289 ACAAAAGAAAAAGAA
1 A-AAAAGAAAAAGAA
82376304 AAAAA
1 AAAAA
82376309 AAGAAAAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
13 9 0.24
14 12 0.32
15 10 0.27
16 6 0.16
ACGTcount: A:0.80, C:0.03, G:0.13, T:0.03
Consensus pattern (14 bp):
AAAAAGAAAAAGAA
Found at i:82376310 original size:16 final size:16
Alignment explanation
Indices: 82376269--82376316 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
82376259 AAAACAGGAA
82376269 AAAAATAAAAGATAAAAG
1 AAAAA-AAAAGA-AAAAG
*
82376287 -AAACAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
82376302 AAAAAAAAAGAAAAA
1 AAAAAAAAAGAAAAA
82376317 ATAGTGAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 5 0.19
16 19 0.70
17 3 0.11
ACGTcount: A:0.83, C:0.02, G:0.10, T:0.04
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:82376784 original size:42 final size:42
Alignment explanation
Indices: 82376718--82377019 Score: 383
Period size: 42 Copynumber: 7.2 Consensus size: 42
82376708 AAGGAAAGCA
* * *
82376718 TTCATTGCATTTAAAGGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACCT
* *
82376760 TTTATTGCATTTAGAGGCCAAGGTGTGGAGGTCCATTTACCT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACCT
* * *
82376802 TTTATTGCATTTAG-GAACCTAGGTGTGGAGGTCCATTTACGT
1 TTCATTGCATTTAGAG-GCCTAGGTGTGGAGGTCCATTTACCT
* *
82376844 TTCATTGCATTTAGAGGTCTAGGTGTGGAGGCCCATTTACCT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACCT
* * * * * * *
82376886 TTCATTGCATTTAGAAGCCCAAGCGTGGAGGTTCGTTTACGT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACCT
*
82376928 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGCCCATTTACCT
1 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACCT
* * *
82376970 TTCATTGCATTTAGAGGCCCT-GGTGTGGAGATCTATTTACTT
1 TTCATTGCATTTAGAGG-CCTAGGTGTGGAGGTCCATTTACCT
82377012 TTCATTGC
1 TTCATTGC
82377020 TTTGTATATG
Statistics
Matches: 224, Mismatches: 33, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
41 1 0.00
42 219 0.98
43 4 0.02
ACGTcount: A:0.20, C:0.18, G:0.25, T:0.36
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACCT
Found at i:82377962 original size:19 final size:20
Alignment explanation
Indices: 82377940--82377993 Score: 51
Period size: 20 Copynumber: 2.7 Consensus size: 20
82377930 ATTTCGAAAT
82377940 AAAGCTTTGATTTTT-AAGA
1 AAAGCTTTGATTTTTAAAGA
*
82377959 AAAG-TAGTGATTTTTTAAAAGA
1 AAAGCT-TTGA-TTTTT-AAAGA
82377981 AAA-CTTTGATTTT
1 AAAGCTTTGATTTT
82377994 GCAAAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
18 1 0.04
19 7 0.25
20 9 0.32
21 3 0.11
22 8 0.29
ACGTcount: A:0.39, C:0.04, G:0.15, T:0.43
Consensus pattern (20 bp):
AAAGCTTTGATTTTTAAAGA
Found at i:82384153 original size:57 final size:57
Alignment explanation
Indices: 82384092--82384207 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 57
82384082 CACATACCTA
* *
82384092 TATATAGCCCACTAGGCCC-AATCTCTTTCACATGACCCATGAGGCCCAAATCACATT
1 TATATAGCCCACTAGGCCCAAATCACATTCACATG-CCCATGAGGCCCAAATCACATT
* * * * * *
82384149 TATATGGCCTATTAGGCCCAAATCACATTCATATGGCCATTAGGCCCAAATCACATT
1 TATATAGCCCACTAGGCCCAAATCACATTCACATGCCCATGAGGCCCAAATCACATT
82384206 TA
1 TA
82384208 CAGTCATGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
57 38 0.76
58 12 0.24
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (57 bp):
TATATAGCCCACTAGGCCCAAATCACATTCACATGCCCATGAGGCCCAAATCACATT
Found at i:82384165 original size:29 final size:28
Alignment explanation
Indices: 82384128--82384207 Score: 133
Period size: 29 Copynumber: 2.8 Consensus size: 28
82384118 TTCACATGAC
*
82384128 CCATGAGGCCCAAATCACATTTATATGG
1 CCATTAGGCCCAAATCACATTTATATGG
*
82384156 CCTATTAGGCCCAAATCACATTCATATGG
1 CC-ATTAGGCCCAAATCACATTTATATGG
82384185 CCATTAGGCCCAAATCACATTTA
1 CCATTAGGCCCAAATCACATTTA
82384208 CAGTCATGCT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
28 22 0.46
29 26 0.54
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (28 bp):
CCATTAGGCCCAAATCACATTTATATGG
Found at i:82388230 original size:41 final size:41
Alignment explanation
Indices: 82388171--82388256 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 41
82388161 TCATTGAGTG
* * **
82388171 GAGTCTGAGTTCAATTATGGATGCGAACATCTGAACTCGTT
1 GAGTCCGAGTTCAATTATGGATGCAAACATCAAAACTCGTT
* *
82388212 GAGTCCGAGTTCACTTATGGATGCAAACGTCAAAACTCGTT
1 GAGTCCGAGTTCAATTATGGATGCAAACATCAAAACTCGTT
82388253 GAGT
1 GAGT
82388257 TGAGTTCGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (41 bp):
GAGTCCGAGTTCAATTATGGATGCAAACATCAAAACTCGTT
Found at i:82391704 original size:39 final size:40
Alignment explanation
Indices: 82391599--82391804 Score: 251
Period size: 39 Copynumber: 5.2 Consensus size: 40
82391589 TTTTCGAATG
* * *
82391599 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
82391640 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
82391680 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
82391719 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
82391759 ATAACCGGGCTATGT-CCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
82391798 ATATCCG
1 ATATCCG
82391805 TTAAATTCTG
Statistics
Matches: 145, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 61 0.42
40 53 0.37
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:82391739 original size:79 final size:79
Alignment explanation
Indices: 82391599--82391793 Score: 241
Period size: 79 Copynumber: 2.4 Consensus size: 79
82391589 TTTTCGAATG
* * *
82391599 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTGACTAAATCCGGACTAAGATCCGAAGGC
82391664 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * **
82391680 A-ATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGC
1 ATA-TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGACTAAGAT-CCGAAGGC
82391743 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
82391759 ATAACCGGGCTATGTCCGAAGGCATTTGAGCGAGT
1 ATATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGT
82391794 AGCTATATCC
Statistics
Matches: 99, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 69 0.70
80 17 0.17
81 12 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGACTAAGATCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:82399886 original size:79 final size:79
Alignment explanation
Indices: 82399746--82399967 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 79
82399736 TATTCGAATG
* * * **
82399746 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGC
82399811 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
82399827 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGC
82399890 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
82399906 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
82399968 TATGTGATTC
Statistics
Matches: 122, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 1 0.01
79 64 0.52
80 45 0.37
81 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:82399948 original size:40 final size:40
Alignment explanation
Indices: 82399746--82399953 Score: 262
Period size: 40 Copynumber: 5.2 Consensus size: 40
82399736 TATTCGAATG
* * *
82399746 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
82399787 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
82399827 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
82399866 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
82399906 ATAACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
82399946 ATATCCGG
1 ATATCCGG
82399954 TTAAATTCCG
Statistics
Matches: 147, Mismatches: 14, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
39 37 0.25
40 81 0.55
41 28 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:82407983 original size:40 final size:40
Alignment explanation
Indices: 82407894--82408082 Score: 187
Period size: 40 Copynumber: 4.8 Consensus size: 40
82407884 TCGAATGATA
* *
82407894 TCCGGGC-AAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
82407932 TACCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 T-CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
82407973 TCCGGGCTAAG--CCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
82408011 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * * *
82408050 AACC-GGCTATGTCCCAAAAGCATTTGAGCGAGT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
82408083 AGCTATATCC
Statistics
Matches: 128, Mismatches: 15, Indels: 15
0.81 0.09 0.09
Matches are distributed among these distances:
38 36 0.28
39 30 0.23
40 51 0.40
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:82408097 original size:78 final size:78
Alignment explanation
Indices: 82407946--82408098 Score: 179
Period size: 78 Copynumber: 2.0 Consensus size: 78
82407936 GGACTAAGAT
* * * *
82407946 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCAAAAGCATTGGAGCGAGTTACTAAA
82408011 TCCGGGTTAAGTC
66 TCCGGGTTAAGTC
* *
82408024 CCGAAGGCATTTGTGCGAGTTACT-ATAACC-GGCTATGTCCCAAAAGCATTTGAGCGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG--CCAAAAGCATTGGAGCGAGTTA-C
*
82408086 TATATCC-GGTTAA
62 TAAATCCGGGTTAA
82408099 ATTTCGAAGG
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
77 8 0.12
78 34 0.53
79 22 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCAAAAGCATTGGAGCGAGTTACTAAA
TCCGGGTTAAGTC
Found at i:82422368 original size:46 final size:47
Alignment explanation
Indices: 82422317--82422447 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 47
82422307 ATGGTTGAGC
82422317 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGGATG-GAACTAG
* * *
82422364 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA--GATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTA-G
82422409 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTC-CTTATGG
82422448 GCGGGTTACA
Statistics
Matches: 71, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 29 0.41
48 2 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (47 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCCTTATGGATGGAACTAG
Found at i:82422433 original size:47 final size:46
Alignment explanation
Indices: 82422315--82422440 Score: 152
Period size: 47 Copynumber: 2.7 Consensus size: 46
82422305 GGATGGTTGA
* *
82422315 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GGATGCGAAT
*
82422363 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATG-TAACT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAA-T
82422406 AGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
1 --GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCG
82422441 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.03
43 5 0.07
45 3 0.04
46 29 0.41
47 30 0.43
48 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGCGAAT
Found at i:82429854 original size:46 final size:46
Alignment explanation
Indices: 82429804--82429979 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
82429794 TGGTTGAGCA
82429804 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82429850 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82429895 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82429943 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82429980 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82429960 original size:93 final size:93
Alignment explanation
Indices: 82429801--82429972 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
82429791 GGATGGTTGA
* *
82429801 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82429866 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
82429894 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82429959 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
82429973 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82439040 original size:9 final size:9
Alignment explanation
Indices: 82439028--82439053 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
82439018 ATTCAGACAA
82439028 CATTTAAAG
1 CATTTAAAG
82439037 CATTTAAAG
1 CATTTAAAG
82439046 CATTTAAA
1 CATTTAAA
82439054 ACATAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.35
Consensus pattern (9 bp):
CATTTAAAG
Found at i:82440411 original size:15 final size:15
Alignment explanation
Indices: 82440391--82440419 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
82440381 TTTTTGTCAT
82440391 TATTGTAATTCTTAA
1 TATTGTAATTCTTAA
82440406 TATTGTAATTCTTA
1 TATTGTAATTCTTA
82440420 GGAAGTAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.55
Consensus pattern (15 bp):
TATTGTAATTCTTAA
Found at i:82440713 original size:13 final size:12
Alignment explanation
Indices: 82440678--82440720 Score: 52
Period size: 11 Copynumber: 3.5 Consensus size: 12
82440668 ACCCATCTCC
82440678 TTATATATTTGT
1 TTATATATTTGT
*
82440690 TT-TATAATTGT
1 TTATATATTTGT
82440701 TTATAATATTTGT
1 TTAT-ATATTTGT
82440714 ATTATAT
1 -TTATAT
82440721 TATACTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 10 0.38
12 3 0.12
13 9 0.35
14 4 0.15
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
TTATATATTTGT
Found at i:82443758 original size:50 final size:50
Alignment explanation
Indices: 82443694--82443961 Score: 337
Period size: 50 Copynumber: 5.4 Consensus size: 50
82443684 TTAGGTCACG
82443694 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCTA
* * * *
82443744 TGTGTAGTAGTAAGTGCAGGCTACTACATGTACCAGATGGTTAGGTCAC-G
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC-CTA
* *
82443794 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTACGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCTA
* * * * * * * *
82443844 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGACAACTTCA-ATCATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGTCCTA
*
82443895 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGC-A
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC-CTA
82443944 TGTGTAGTACTAAGTGCA
1 TGTGTAGTACTAAGTGCA
82443962 AACTGCTATG
Statistics
Matches: 185, Mismatches: 27, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
49 21 0.11
50 122 0.66
51 41 0.22
52 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCTA
Found at i:82443816 original size:100 final size:101
Alignment explanation
Indices: 82443684--82443962 Score: 377
Period size: 100 Copynumber: 2.8 Consensus size: 101
82443674 TAAGATGGTT
82443684 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCTATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCTATGTGT
* * * ***
82443749 AGTAGTAAGTGCAGGCTACTACATGTACCAGA-TGG
66 AGTACTAAGTGCAAGCTACTACACGTACCAGACAAC
* *
82443784 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTACGTCGTATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCTATGTGT
** *
82443849 AGTACTAAGTGCAAGCTACTATGCGTACCTGACAAC
66 AGTACTAAGTGCAAGCTACTACACGTACCAGACAAC
* ** *
82443885 TTCA-ATCATATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGC-ATGT
1 TT-AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC-CTATGT
82443947 GTAGTACTAAGTGCAA
64 GTAGTACTAAGTGCAA
82443963 ACTGCTATGC
Statistics
Matches: 159, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
100 112 0.70
101 46 0.29
102 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCTATGTGT
AGTACTAAGTGCAAGCTACTACACGTACCAGACAAC
Found at i:82443978 original size:150 final size:150
Alignment explanation
Indices: 82443694--82443980 Score: 371
Period size: 150 Copynumber: 1.9 Consensus size: 150
82443684 TTAGGTCACG
* * * * * * *
82443694 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCCTATGTGTAGTAGTAAGT
1 TGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGAAACTTAGATCATATGTGTAGTACTAAGT
* ** **
82443759 GCAGGCTACTACATGTACCAGATGGTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTG
66 GCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTGCAAACTACTACGCA
82443824 TACCAGATAGTTACGTCGTA
131 TACCAGATAGTTACGTCGTA
* *
82443844 TGTGTAGTACTAAGTGCAAGCTACTATGCGTACCTGACAACTTCA-ATCATATGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGA-AACTT-AGATCATATGTGTAGTACTAA
* * * * *
82443908 GTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGCATGTGTAGTACTAAGTGCAAACTGCTATG
64 GTGCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTGCAAACTACTACG
82443972 CATACCAGA
129 CATACCAGA
82443981 CAGCTTTGGT
Statistics
Matches: 116, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
150 69 0.59
151 46 0.40
152 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (150 bp):
TGTGTAGTACTAAGTGCAAGCTACTACGCGTACCAGAAACTTAGATCATATGTGTAGTACTAAGT
GCAGGCTACTACATGTACCAGATGGTTAGGTCACATGTGTAGTACTAAGTGCAAACTACTACGCA
TACCAGATAGTTACGTCGTA
Found at i:82447941 original size:39 final size:39
Alignment explanation
Indices: 82447887--82448129 Score: 362
Period size: 39 Copynumber: 6.1 Consensus size: 39
82447877 AATTTTATTA
*
82447887 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
82447926 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
82447965 CCAGCACGAAGCCTGCGGGTCTTTAG-CCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
82448003 CCAGCACGAAGCCTGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCAC--A-----AAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
82448049 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
*
82448088 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
82448127 CCA
1 CCA
82448130 TACACATTTC
Statistics
Matches: 188, Mismatches: 8, Indels: 16
0.89 0.04 0.08
Matches are distributed among these distances:
38 18 0.10
39 134 0.71
45 18 0.10
46 18 0.10
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:82448114 original size:123 final size:124
Alignment explanation
Indices: 82447895--82448129 Score: 427
Period size: 123 Copynumber: 1.9 Consensus size: 124
82447885 TACCAGCACA
82447895 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATA
*
82447960 CATTTCCAGCACGAAGCCTGCGGGTCTTTAG-CCGGATATATTTCCAGCACGAAGCCTG
66 CATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCAGCACGAAGCCTG
* *
82448018 AAGCCTGCGGGTCTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATA
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATA
*
82448083 TATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
66 CATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
82448130 TACACATTTC
Statistics
Matches: 107, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
123 92 0.86
124 15 0.14
ACGTcount: A:0.22, C:0.29, G:0.25, T:0.24
Consensus pattern (124 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATA
CATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCAGCACGAAGCCTG
Found at i:82453937 original size:39 final size:39
Alignment explanation
Indices: 82453883--82454126 Score: 344
Period size: 39 Copynumber: 6.1 Consensus size: 39
82453873 AATTTTATTA
* *
82453883 CCAGCACAAACCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
82453922 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* * *
82453961 CCAGCACGAAGCCTGCGGGTCTTTAGCCTGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
82454000 CCAGCACGAAGCCTGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCAC--A-----AAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
82454046 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
* *
82454085 CCAGCGCAAAGCCTGCGGGTCTTTAGCCCGGATATATTT
1 CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
82454124 CCA
1 CCA
82454127 TACACATTTC
Statistics
Matches: 186, Mismatches: 12, Indels: 14
0.88 0.06 0.07
Matches are distributed among these distances:
39 150 0.81
46 36 0.19
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (39 bp):
CCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACATTT
Found at i:82454073 original size:85 final size:78
Alignment explanation
Indices: 82453883--82454126 Score: 353
Period size: 85 Copynumber: 3.0 Consensus size: 78
82453873 AATTTTATTA
* * * * *
82453883 CCAGCACAAACCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAG
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCAGCGCAAAGCCTGCGGGTCTTTAG
82453948 CCCGGATACATTT
66 CCCGGATACATTT
* *
82453961 CCAGCACGAAGCCTGCGGGTCTTTAGCCTGGATATATTTCCAGCACGAAGCCTGAAGCCTGCGGG
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCAG--C---G-C-AAAGCCTGCGGG
82454026 TCTTTAGCCCGGATACATTT
59 TCTTTAGCCCGGATACATTT
82454046 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCAGCGCAAAGCCTGCGGGTCTTTAG
1 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCAGCGCAAAGCCTGCGGGTCTTTAG
*
82454111 CCCGGATATATTT
66 CCCGGATACATTT
82454124 CCA
1 CCA
82454127 TACACATTTC
Statistics
Matches: 149, Mismatches: 10, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
78 71 0.48
79 1 0.01
80 2 0.01
83 1 0.01
84 1 0.01
85 73 0.49
ACGTcount: A:0.22, C:0.30, G:0.24, T:0.24
Consensus pattern (78 bp):
CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCAGCGCAAAGCCTGCGGGTCTTTAG
CCCGGATACATTT
Found at i:82454118 original size:124 final size:124
Alignment explanation
Indices: 82453894--82454126 Score: 412
Period size: 124 Copynumber: 1.9 Consensus size: 124
82453884 CAGCACAAAC
82453894 CCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
1 CCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
* *
82453959 TTCCAGCACGAAGCCTGCGGGTCTTTAGCCTGGATATATTTCCAGCACGAAGCCTGAAG
66 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCAGCACGAAGCCTGAAG
* * *
82454018 CCTGCGGGTCTTTAGCCCGGATACATTTCCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATATAT
1 CCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
*
82454083 TTCCAGCGCAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
66 TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCA
82454127 TACACATTTC
Statistics
Matches: 103, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
124 103 1.00
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (124 bp):
CCTGCGGGACTTTAGCCCGGATACATTTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATACAT
TTCCAGCACAAAGCCTGCGGGTCTTTAGCCCGGATATATTTCCAGCACGAAGCCTGAAG
Found at i:82459754 original size:24 final size:24
Alignment explanation
Indices: 82459722--82459771 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
82459712 AATGGGTGAA
82459722 ATAGAATATTTTTAAGTTAGGGGC
1 ATAGAATATTTTTAAGTTAGGGGC
82459746 ATAGAATATTTTTAAGTTAGGGGC
1 ATAGAATATTTTTAAGTTAGGGGC
82459770 AT
1 AT
82459772 TTTGGTAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.04, G:0.24, T:0.38
Consensus pattern (24 bp):
ATAGAATATTTTTAAGTTAGGGGC
Found at i:82460006 original size:34 final size:34
Alignment explanation
Indices: 82459963--82460031 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
82459953 CGTAACAAGA
82459963 TCTACTCATTTCTACCCATATTTTGAGCTATGGT
1 TCTACTCATTTCTACCCATATTTTGAGCTATGGT
82459997 TCTACTCATTTCTACCCATATTTTGAGCTATGGT
1 TCTACTCATTTCTACCCATATTTTGAGCTATGGT
82460031 T
1 T
82460032 TGTGTTTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (34 bp):
TCTACTCATTTCTACCCATATTTTGAGCTATGGT
Found at i:82460823 original size:50 final size:49
Alignment explanation
Indices: 82460749--82461089 Score: 324
Period size: 50 Copynumber: 6.8 Consensus size: 49
82460739 GGTTTTAGGT
* *
82460749 CATGTGTATGGTACTAAGTGCAGGCTATTACGTGTACCAGATAGTTACGTCG
1 CATGTGTA--GTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT-CGTCA
* * * * *
82460801 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACAACTTCAATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTC-GTCA
* * *
82460852 CATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGATCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTCG-TCA
* * * * * *
82460902 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCAATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTC-GTCA
* * *
82460953 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-ACGTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA-GTT-CGTCA
* * * * * * *
82461003 CGTGTGTAGAACTAAGTGTAGGCTACTACATGTACCGGATTGTTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTCGTCA
* * *
82461052 CATGTGTAGTACTAAGTGCAGTCTACTATGCGTACCAG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG
82461090 CTAGCTTTCG
Statistics
Matches: 235, Mismatches: 46, Indels: 19
0.78 0.15 0.06
Matches are distributed among these distances:
49 36 0.15
50 111 0.47
51 80 0.34
52 8 0.03
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (49 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTCGTCA
Found at i:82461038 original size:101 final size:101
Alignment explanation
Indices: 82460749--82461089 Score: 436
Period size: 101 Copynumber: 3.4 Consensus size: 101
82460739 GGTTTTAGGT
* *
82460749 CATGTGTATGGTACTAAGTGCAGGCTATTACGTGTACCAGATAGTTACGTCGCATGTGTAGTACT
1 CATGTGTA--GTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACT
82460814 AAGTGCAGGCTACTATGTGTACCCGACAACTTCAATCA
64 AAGTGCAGGCTACTATGTGTACCCGACAACTTCAATCA
* *
82460852 CATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGATCGCATGTGTAGTACTAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAA
*
82460917 GTGCAGGCTACTATGCGTACCCGACAACTTCAATCA
66 GTGCAGGCTACTATGTGTACCCGACAACTTCAATCA
* * * * *
82460953 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-ACGTTAGGTCACGTGTGTAGAACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA-GTTAGGTCGCATGTGTAGTACTA
* ** * *** **
82461017 AGTGTAGGCTACTACATGTACCGGA-TTGTT-GGTCA
65 AGTGCAGGCTACTATGTGTACCCGACAACTTCAATCA
* * *
82461052 CATGTGTAGTACTAAGTGCAGTCTACTATGCGTACCAG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG
82461090 CTAGCTTTCG
Statistics
Matches: 210, Mismatches: 27, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
99 36 0.17
100 3 0.01
101 163 0.78
103 8 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (101 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGCATGTGTAGTACTAA
GTGCAGGCTACTATGTGTACCCGACAACTTCAATCA
Found at i:82461125 original size:150 final size:151
Alignment explanation
Indices: 82460803--82461089 Score: 382
Period size: 151 Copynumber: 1.9 Consensus size: 151
82460793 TTACGTCGCA
* * * * * *
82460803 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCCGACAAC-TTCA-ATCACATGTGTAGTACTA
1 TGTGTAGTAATAAGTGCAGGCTACTACGTGTA-TC-AGAACGTT-AGGTCACATGTGTAGAACTA
* *
82460866 AGTGTAGGCTACTACGTGTACCAGATAGTTAGATCGCATGTGTAGTACTAAGTGCAGGCTACTAT
63 AGTGTAGGCTACTACATGTACCAGATAGTTAGATCACATGTGTAGTACTAAGTGCAGGCTACTAT
* *
82460931 GCGTACCCGACAACTTCAATCACG
128 GCGTACCAGACAACTTCAATCAAG
* *
82460955 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAACGTTAGGTCACGTGTGTAGAACTAAGT
1 TGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGAACGTTAGGTCACATGTGTAGAACTAAGT
* * * *
82461020 GTAGGCTACTACATGTACCGGATTGTT-GGTCACATGTGTAGTACTAAGTGCAGTCTACTATGCG
66 GTAGGCTACTACATGTACCAGATAGTTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCG
82461084 TACCAG
131 TACCAG
82461090 CTAGCTTTCG
Statistics
Matches: 120, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
150 44 0.37
151 45 0.38
152 31 0.26
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (151 bp):
TGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGAACGTTAGGTCACATGTGTAGAACTAAGT
GTAGGCTACTACATGTACCAGATAGTTAGATCACATGTGTAGTACTAAGTGCAGGCTACTATGCG
TACCAGACAACTTCAATCAAG
Found at i:82462912 original size:42 final size:42
Alignment explanation
Indices: 82462821--82462913 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 42
82462811 GCAAAGACAC
*
82462821 GACCGTGTGGAAGACACGGTCTAGCACACGGACGTGTGACTT
1 GACCGTGTGGAAGACACGGTCTAGCACACGGACATGTGACTT
*
82462863 -AGTCGTGTGGAAGACACGGTCTAGCACA--GATGCATGTGACTT
1 GA-CCGTGTGGAAGACACGGTCTAGCACACGGA--CATGTGACTT
82462905 GACCGTGTG
1 GACCGTGTG
82462914 ACCCTTACTT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
40 2 0.05
41 1 0.02
42 40 0.91
43 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.33, T:0.22
Consensus pattern (42 bp):
GACCGTGTGGAAGACACGGTCTAGCACACGGACATGTGACTT
Found at i:82470555 original size:18 final size:17
Alignment explanation
Indices: 82470514--82470556 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
82470504 ATGGGAAATT
*
82470514 AGCATGATTAATTTGGG
1 AGCATGATAAATTTGGG
*
82470531 A-CATGATAAATGTTGTG
1 AGCATGATAAAT-TTGGG
82470548 AGCATGATA
1 AGCATGATA
82470557 GTGGATGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 9 0.41
17 6 0.27
18 7 0.32
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.33
Consensus pattern (17 bp):
AGCATGATAAATTTGGG
Found at i:82473439 original size:26 final size:26
Alignment explanation
Indices: 82473381--82473463 Score: 84
Period size: 26 Copynumber: 3.3 Consensus size: 26
82473371 CTGGAGGCCT
82473381 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
** *
82473405 AGCCC-TTTCGGTAATCTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
* *
82473430 AGCCCTTTTCAATAAACTAGAGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
82473456 AGCCCTTT
1 AGCCCTTT
82473464 ATCACTTCTT
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
22 3 0.06
23 2 0.04
24 13 0.28
25 6 0.13
26 23 0.49
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:82473557 original size:20 final size:20
Alignment explanation
Indices: 82473514--82473568 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
82473504 TTATGAATAC
* *
82473514 ATCATGTGCATTTCATACGT
1 ATCATGTGCATATCATACGA
82473534 ATCATGTGCATATCATATC-A
1 ATCATGTGCATATCATA-CGA
82473554 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
82473569 GCCCATGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.25
20 23 0.72
21 1 0.03
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (20 bp):
ATCATGTGCATATCATACGA
Found at i:82491510 original size:47 final size:47
Alignment explanation
Indices: 82491441--82491553 Score: 199
Period size: 47 Copynumber: 2.4 Consensus size: 47
82491431 GACCATAAGT
* *
82491441 GAACTCGGACTCAACACAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
82491488 GAACTCTGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
82491535 GAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAA
82491554 TGAGCTTAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 63 1.00
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82504829 original size:40 final size:40
Alignment explanation
Indices: 82504775--82504959 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
82504765 CTTGCACAAG
* *
82504775 GCCTTCGGGTCTTAGCCCGGATAT-GATCACTAGCACAGAT
1 GCCTTCGGGACTTAGCCCGGATATAG-TCACTAGCACAAAT
*
82504815 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
82504855 GCCTTCGGGTCTTAGCCCGGATATAGTAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
82504895 GCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCA-CTAGCACAAAT
82504936 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
82504960 CATTCGAATT
Statistics
Matches: 124, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 2 0.02
40 92 0.74
41 27 0.22
42 3 0.02
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:82507583 original size:27 final size:27
Alignment explanation
Indices: 82507553--82507618 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
82507543 AGGGCATATT
82507553 GGTCATTTTACCATACAAGGG-TATTAC
1 GGTCATTTTACCATACAAGGGCT-TTAC
* * *
82507580 GGTCACTTTACCCTACAGGGGCTTTAC
1 GGTCATTTTACCATACAAGGGCTTTAC
*
82507607 GGTCTTTTTACC
1 GGTCATTTTACC
82507619 TATTAGGGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTCATTTTACCATACAAGGGCTTTAC
Found at i:82507785 original size:27 final size:26
Alignment explanation
Indices: 82507721--82507858 Score: 93
Period size: 27 Copynumber: 5.1 Consensus size: 26
82507711 TTTTTATAAT
* * *
82507721 TTTTAGAAAGTCAAGGGTATTTTTGTAA
1 TTTTACAAA-TCAGGGGTA-TTTGGTAA
**
82507749 TTTTGTAAATCAGGGGTATTGTGGTAA
1 TTTTACAAATCAGGGGTATT-TGGTAA
*
82507776 TTTTACAAAT-TGAGGGTATTTCGGTAA
1 TTTTACAAATCAG-GGGTATTT-GGTAA
* * *
82507803 TTTCACAAA-CTAGTGGTATTTCGATAA
1 TTTTACAAATC-AGGGGTATTT-GGTAA
82507830 TTTTACAAA-CTAGGGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTA-TTTGGTAA
82507857 TT
1 TT
82507859 CTATCCTACA
Statistics
Matches: 90, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
26 4 0.04
27 75 0.83
28 11 0.12
ACGTcount: A:0.30, C:0.07, G:0.22, T:0.41
Consensus pattern (26 bp):
TTTTACAAATCAGGGGTATTTGGTAA
Found at i:82507926 original size:27 final size:27
Alignment explanation
Indices: 82507894--82508087 Score: 237
Period size: 27 Copynumber: 7.2 Consensus size: 27
82507884 TTTCACCATT
*
82507894 GAGGGTAAAACGGTAATTTTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
82507920 TGAGGGTAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* *
82507948 AAGGGTAAAACGGTAATTCTGTAAATG
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
82507975 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
82508002 GAGAGTAAAACGGTAATTTTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * *
82508029 GAGGGTGAAACGATAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* **
82508056 GAGGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
82508083 GAGGG
1 GAGGG
82508088 CATTTCAGTA
Statistics
Matches: 144, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 143 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTGTAAATC
Found at i:82508010 original size:81 final size:81
Alignment explanation
Indices: 82507894--82508085 Score: 269
Period size: 81 Copynumber: 2.4 Consensus size: 81
82507884 TTTCACCATT
* * * * *
82507894 GAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTAAAA
1 GAGGGTAAAATGGTAATTCTATAAATC-GAGAGTAAAACGGTAATTTTGTAAATCAAGGGTAAAA
* * *
82507958 CGGTAATTCTGTAAATG
65 CGATAATTCTATAAATC
* *
82507975 GAGGGTAAAATGGTAATTCTATAAATCGAGAGTAAAACGGTAATTTTGTAAATCGAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGAGTAAAACGGTAATTTTGTAAATCAAGGGTAAAAC
82508040 GATAATTCTATAAATC
66 GATAATTCTATAAATC
*
82508056 GAGGGTAAAATGGTAATTCTACAAATCGAG
1 GAGGGTAAAATGGTAATTCTATAAATCGAG
82508086 GGCATTTCAG
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
81 98 0.99
82 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTATAAATCGAGAGTAAAACGGTAATTTTGTAAATCAAGGGTAAAAC
GATAATTCTATAAATC
Found at i:82509767 original size:40 final size:40
Alignment explanation
Indices: 82509723--82509947 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 40
82509713 CTTGCACAAG
* * *
82509723 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
82509763 GCCTTCGGGACTTAGCCCGAATATAGTCGA-TAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
82509803 GCCTTCGGGTTTTAGCCCGGATATAATCGCCAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
82509843 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
82509883 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
82509924 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
82509948 CATTCGAATA
Statistics
Matches: 153, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.80
41 30 0.20
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:82517321 original size:14 final size:14
Alignment explanation
Indices: 82517304--82517333 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
82517294 TTTCTTGGCT
*
82517304 GGTTCGGTTCACTC
1 GGTTCGGTTCAATC
82517318 GGTTCGGTTCAATC
1 GGTTCGGTTCAATC
82517332 GG
1 GG
82517334 ACCATTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.23, G:0.33, T:0.33
Consensus pattern (14 bp):
GGTTCGGTTCAATC
Found at i:82519504 original size:46 final size:45
Alignment explanation
Indices: 82519408--82519580 Score: 149
Period size: 47 Copynumber: 3.7 Consensus size: 45
82519398 TATATCTGTA
* * *
82519408 CCGATGCCATGTCCCAGACATGGTATTACACT-GACACATC-T-CGTAG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CAC-TCATAAGTGG
*
82519454 CCGATGCATGTCCCAGACATGTCTTACACTAGCACTCGGCTCAA-T-G
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCACTC--AT-AAGTGG
* *
82519500 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATAA-GTGG
* *
82519548 CTGATGCATGTCCCAAACATGTCTTACACTAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTAGC
82519581 TAACACAAAT
Statistics
Matches: 108, Mismatches: 8, Indels: 22
0.78 0.06 0.16
Matches are distributed among these distances:
43 2 0.02
44 12 0.11
45 17 0.16
46 27 0.25
47 29 0.27
48 21 0.19
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATAAGTGG
Found at i:82519529 original size:92 final size:93
Alignment explanation
Indices: 82519408--82519580 Score: 251
Period size: 92 Copynumber: 1.9 Consensus size: 93
82519398 TATATCTGTA
*
82519408 CCGATGCCATGTCCCAGACATGGTATTACACTGACACATC-T-CGTAGCCGATGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTATTACACTGACAC-TCATACGTAGCCGATGCATGTCCCAAA
82519471 CATGTCTTACACTAGCACTCGGCTCAATG
65 CATGTCTTACACTAGCACTCGGCTCAATG
* * * * * *
82519500 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATGCATGTCCCAAA
1 CCGATGCCATGTCCCAGACATGGTATTACACTGACACTCAT-ACGTAGCCGATGCATGTCCCAAA
82519565 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
82519581 TAACACAAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
91 2 0.03
92 35 0.49
94 34 0.48
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTATTACACTGACACTCATACGTAGCCGATGCATGTCCCAAAC
ATGTCTTACACTAGCACTCGGCTCAATG
Found at i:82526025 original size:93 final size:93
Alignment explanation
Indices: 82525913--82526083 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
82525903 GCCCATAAGT
* *
82525913 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82525978 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
82526006 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82526071 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82526084 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:82526080 original size:46 final size:46
Alignment explanation
Indices: 82525905--82526080 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
82525895 TGTAACCCGC
* * *
82525905 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82525951 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
82526001 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
82526044 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82526081 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82528481 original size:15 final size:15
Alignment explanation
Indices: 82528452--82528501 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
82528442 CAAAGATAAC
*
82528452 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
82528466 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
82528481 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
82528496 AAGAAA
1 AAGAAA
82528502 CTTAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:82531572 original size:92 final size:92
Alignment explanation
Indices: 82531415--82531584 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
82531405 CCCCCTAAGT
* * *
82531415 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACACAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82531480 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
82531507 GAACTCGGACTCAACACAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACACAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
82531572 CGAGTTCGGATGC
66 CGAGTTCGGATGC
82531585 TCTACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACACAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:82531600 original size:46 final size:47
Alignment explanation
Indices: 82531410--82531581 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 47
82531400 GTAACCCCCC
* *
82531410 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
* * * *
82531456 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAG-TTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-GCATTCGCATCCA
* * *
82531502 TTCA-CGAACTCGGACTCAACACAACGAGTTCGGA-CATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
82531548 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
82531582 TGCTCTACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
44 1 0.01
45 4 0.04
46 94 0.90
47 4 0.04
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.21
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCATCCA
Found at i:82545735 original size:42 final size:43
Alignment explanation
Indices: 82545658--82545762 Score: 113
Period size: 42 Copynumber: 2.4 Consensus size: 43
82545648 TCTTATATGT
* *
82545658 AATCAAATATCGATGCCACTGTCCCAAATAGGGTCTTACA-CAA
1 AATCAAAT-TCGATGCCAATGTCCCAAACAGGGTCTTACATCAA
* * * **
82545701 AATCAAATTCGATGCCAATGTCCTAGACATGGTCTTACATGTA
1 AATCAAATTCGATGCCAATGTCCCAAACAGGGTCTTACATCAA
*
82545744 AATCAAAAGTCGATGCCAA
1 AATC-AAATTCGATGCCAA
82545763 CATCCCAGAT
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
42 26 0.50
43 13 0.25
44 13 0.25
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (43 bp):
AATCAAATTCGATGCCAATGTCCCAAACAGGGTCTTACATCAA
Found at i:82545778 original size:44 final size:43
Alignment explanation
Indices: 82545644--82545785 Score: 130
Period size: 44 Copynumber: 3.3 Consensus size: 43
82545634 CGGAAAGCTC
* *
82545644 GTGGTCTTATATGT-AATCAAATATCGATGCC-ACTGTCCCAAAT
1 GTGGTCTTACATGTAAATCAAA-ATCGATGCCAAC-GTCCCAGAT
** * * * *
82545687 AG-GGTCTTACA-CAAAATCAAATTCGATGCCAATGTCCTAGAC
1 -GTGGTCTTACATGTAAATCAAAATCGATGCCAACGTCCCAGAT
* *
82545729 ATGGTCTTACATGTAAATCAAAAGTCGATGCCAACATCCCAGAT
1 GTGGTCTTACATGTAAATCAAAA-TCGATGCCAACGTCCCAGAT
82545773 GTGGTCTTACATG
1 GTGGTCTTACATG
82545786 ATTTCACATA
Statistics
Matches: 76, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
42 23 0.30
43 24 0.32
44 29 0.38
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (43 bp):
GTGGTCTTACATGTAAATCAAAATCGATGCCAACGTCCCAGAT
Found at i:82548620 original size:27 final size:26
Alignment explanation
Indices: 82548603--82548672 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
82548593 ATATTAAGTC
82548603 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
82548630 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
82548658 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
82548673 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:82548666 original size:28 final size:28
Alignment explanation
Indices: 82548603--82548700 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
82548593 ATATTAAGTC
*
82548603 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
82548630 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
82548658 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
82548687 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82548701 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82549164 original size:12 final size:12
Alignment explanation
Indices: 82549147--82549173 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
82549137 TGGGCATACT
82549147 TATGTATATATA
1 TATGTATATATA
82549159 TATGTATATATA
1 TATGTATATATA
82549171 TAT
1 TAT
82549174 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:82556902 original size:27 final size:26
Alignment explanation
Indices: 82556885--82556954 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
82556875 ATATTAAGTC
82556885 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
82556912 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
82556940 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
82556955 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:82556948 original size:28 final size:28
Alignment explanation
Indices: 82556885--82556982 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
82556875 ATATTAAGTC
*
82556885 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
82556912 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
82556940 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
82556969 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82556983 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:82557446 original size:12 final size:12
Alignment explanation
Indices: 82557429--82557454 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82557419 TGGGCATACT
82557429 TATGTATATATA
1 TATGTATATATA
82557441 TATGTATATATA
1 TATGTATATATA
82557453 TA
1 TA
82557455 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:82564548 original size:40 final size:40
Alignment explanation
Indices: 82564499--82564706 Score: 253
Period size: 40 Copynumber: 5.2 Consensus size: 40
82564489 CAGAACTTAA
* *
82564499 CCGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82564539 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
82564579 CCGGATTTAGTAACTCGCACCAATGCATTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
82564618 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
82564658 CCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
82564699 CCGGATAT
1 CCGGATAT
82564707 CATTCGAATA
Statistics
Matches: 144, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.01
39 32 0.22
40 79 0.55
41 28 0.19
42 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:82564629 original size:79 final size:78
Alignment explanation
Indices: 82564493--82564703 Score: 248
Period size: 79 Copynumber: 2.6 Consensus size: 78
82564483 TACCTTCAGA
* * *
82564493 ACTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGC
1 ACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGC
82564557 ACAAATGCCTTCGGG
65 ACAAATGCCTTC-GG
* * *
82564572 ACTTAACCCGGATTTAGTAACTCGCACCAATGCATTCGGG-CTTAGCCCGGAAT-TAGTAACTCG
1 ACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCG
82564635 CACAAATGCCTTCGG
64 CACAAATGCCTTCGG
* * *
82564650 ATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 A-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
82564704 TATCATTCGA
Statistics
Matches: 112, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.03
79 55 0.49
80 43 0.38
81 11 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (78 bp):
ACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCA
CAAATGCCTTCGG
Found at i:82572819 original size:79 final size:79
Alignment explanation
Indices: 82572675--82572893 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
82572665 GAATCACATA
* * * * *
82572675 CCTTCGGAATTTAACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAG
82572739 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
82572754 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT-TA
1 CCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
82572817 GTAACTCGCACAAATG
64 GTAACTCGCACAAATG
* * *
82572833 CCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
82572894 TATCATTCGA
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 61 0.51
80 45 0.38
81 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATAGT
AACTCGCACAAATG
Found at i:82572822 original size:39 final size:41
Alignment explanation
Indices: 82572689--82572893 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 41
82572679 CGGAATTTAA
* *
82572689 CCGG-ATATAGCT-ACTCGCTCAAATGCCTTCGGGACATAGC
1 CCGGAATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82572729 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82572769 CCGG-ATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
82572808 CCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
82572848 CCGG-ATATAGTCACTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGAATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
82572889 CCGGA
1 CCGGA
82572894 TATCATTCGA
Statistics
Matches: 143, Mismatches: 14, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.24
40 81 0.57
41 23 0.16
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:82575273 original size:114 final size:114
Alignment explanation
Indices: 82575071--82575293 Score: 365
Period size: 114 Copynumber: 2.0 Consensus size: 114
82575061 GAGACACGGG
*
82575071 TGTGTCTCAGTCGTGTGGACAGCACAGCCTTGAACACAGGCGTGTGCCCTGGCCGTGTGAAGTCT
1 TGTGTCTCAGTCGTGTGGACAGAACAGCCTTGAACACAGGCGTGTGCCCTGGCCGTGTGAAGTCT
** *
82575136 GCACCTATTTTGTGAAAATTAATTTTCCACACAGTCTAGCACACAGGCA
66 GCACCTATTCAGTGAAAAATAATTTTCCACACAGTCTAGCACACAGGCA
* * *
82575185 TGTGTCTCAGTCGTGTGGACGGAACAGCCTTGAACATAGGCGTGTGCCCTGGCTGTGTGAAGTCT
1 TGTGTCTCAGTCGTGTGGACAGAACAGCCTTGAACACAGGCGTGTGCCCTGGCCGTGTGAAGTCT
* *
82575250 GCACTTATTCAGTGAAAAATAATTTTCCACATAGTCTAGCACAC
66 GCACCTATTCAGTGAAAAATAATTTTCCACACAGTCTAGCACAC
82575294 GAGCGTGTGA
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 100 1.00
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (114 bp):
TGTGTCTCAGTCGTGTGGACAGAACAGCCTTGAACACAGGCGTGTGCCCTGGCCGTGTGAAGTCT
GCACCTATTCAGTGAAAAATAATTTTCCACACAGTCTAGCACACAGGCA
Found at i:82581434 original size:18 final size:18
Alignment explanation
Indices: 82581397--82581436 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
82581387 ATTTGTGGTA
*
82581397 TTTTTGAAAACATTTATC
1 TTTTTGAAAACATGTATC
* *
82581415 TTTTTGAAAACCTGTGTC
1 TTTTTGAAAACATGTATC
82581433 TTTT
1 TTTT
82581437 CTTATTGCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.25, C:0.12, G:0.10, T:0.53
Consensus pattern (18 bp):
TTTTTGAAAACATGTATC
Found at i:82591091 original size:18 final size:18
Alignment explanation
Indices: 82591068--82591106 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
82591058 GTTGCTCTCC
82591068 TTTAAAGTGAAGCCCTTT
1 TTTAAAGTGAAGCCCTTT
82591086 TTTAAAGTGAAGCCCTTT
1 TTTAAAGTGAAGCCCTTT
82591104 TTT
1 TTT
82591107 GGATGCATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (18 bp):
TTTAAAGTGAAGCCCTTT
Found at i:82591318 original size:25 final size:25
Alignment explanation
Indices: 82591260--82591333 Score: 71
Period size: 26 Copynumber: 2.9 Consensus size: 25
82591250 TTAGTTTCTC
*
82591260 AATAAAATTTAA-TAAAAATTATTAA
1 AATAAAA-TTAATTAAAAATTAATAA
**
82591285 AATTCAATTAATTGAAAAATTAAT-A
1 AATAAAATTAATT-AAAAATTAATAA
82591310 AATAAAATTAAAATTAAAAATTAA
1 AATAAAATT--AATTAAAAATTAA
82591334 GAGAGACTAG
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
24 4 0.10
25 14 0.35
26 18 0.45
27 4 0.10
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.34
Consensus pattern (25 bp):
AATAAAATTAATTAAAAATTAATAA
Found at i:82603629 original size:16 final size:15
Alignment explanation
Indices: 82603608--82603637 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
82603598 CCCCTAGTTC
82603608 TAATATATATAAATAT
1 TAATATA-ATAAATAT
82603624 TAATATAATAAATA
1 TAATATAATAAATA
82603638 GATATGTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
TAATATAATAAATAT
Found at i:82802164 original size:11 final size:11
Alignment explanation
Indices: 82802150--82802180 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
82802140 CTCATTCATT
82802150 ATCACATAAAC
1 ATCACATAAAC
82802161 ATCACATAAAC
1 ATCACATAAAC
82802172 ATCACATAA
1 ATCACATAA
82802181 TTCACTTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (11 bp):
ATCACATAAAC
Found at i:82803105 original size:56 final size:56
Alignment explanation
Indices: 82803019--82803124 Score: 194
Period size: 56 Copynumber: 1.9 Consensus size: 56
82803009 GGAAGGGAGT
* *
82803019 AAGCATTATAGCTTAGTAGGTAAGTATGTAAATATTAATAAACAATACATCATAGC
1 AAGCATTATAGCTTAGTAAGTAAGTATGTAAATATTAATAAAAAATACATCATAGC
82803075 AAGCATTATAGCTTAGTAAGTAAGTATGTAAATATTAATAAAAAATACAT
1 AAGCATTATAGCTTAGTAAGTAAGTATGTAAATATTAATAAAAAATACAT
82803125 TATCATACTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 48 1.00
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.31
Consensus pattern (56 bp):
AAGCATTATAGCTTAGTAAGTAAGTATGTAAATATTAATAAAAAATACATCATAGC
Found at i:82804829 original size:30 final size:30
Alignment explanation
Indices: 82804795--82804855 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
82804785 TCCTTAACTC
82804795 AAACTTTAGAAAAATTACAATTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
* * * * *
82804825 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACAATTTTGCCCCT
82804855 A
1 A
82804856 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTGCCCCT
Found at i:82819335 original size:29 final size:29
Alignment explanation
Indices: 82819274--82819388 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
82819264 CCCTTACATG
* *
82819274 CATATGGCCCACTAAGCCC-AATC-TAATT
1 CATATGGCCCATTAGGCCCAAATCAT-ATT
*
82819302 CATATGGCCCATTAGGCCCAAATCATATC
1 CATATGGCCCATTAGGCCCAAATCATATT
*
82819331 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCATATT
**
82819360 CATATGGCCCATCCGGCCCAAATCA-ATT
1 CATATGGCCCATTAGGCCCAAATCATATT
82819388 C
1 C
82819389 CAAGCCATGT
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
28 21 0.27
29 56 0.72
30 1 0.01
ACGTcount: A:0.30, C:0.33, G:0.13, T:0.23
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCATATT
Found at i:82819378 original size:58 final size:57
Alignment explanation
Indices: 82819274--82819384 Score: 161
Period size: 58 Copynumber: 1.9 Consensus size: 57
82819264 CCCTTACATG
*
82819274 CATATGGCCCACTAAGCCCAATCTAATTCATATGGCCCATTAGGCCCAAATCATATC
1 CATATGGCCCACTAAGCCCAATCTAATTCATATGGCCCATCAGGCCCAAATCATATC
* * *
82819331 CATATGGCCCATTAGGCCCAAATC-ACATTCATATGGCCCATCCGGCCCAAATCA
1 CATATGGCCCACTAAGCCC-AATCTA-ATTCATATGGCCCATCAGGCCCAAATCA
82819385 ATTCCAAGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
57 18 0.38
58 30 0.62
ACGTcount: A:0.31, C:0.33, G:0.14, T:0.23
Consensus pattern (57 bp):
CATATGGCCCACTAAGCCCAATCTAATTCATATGGCCCATCAGGCCCAAATCATATC
Found at i:82821707 original size:46 final size:46
Alignment explanation
Indices: 82821657--82821785 Score: 195
Period size: 46 Copynumber: 2.8 Consensus size: 46
82821647 TGGTTGAGCA
*
82821657 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* **
82821703 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGTTAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
82821749 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82821786 GCGGGTTACA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:82828259 original size:46 final size:40
Alignment explanation
Indices: 82828183--82828410 Score: 298
Period size: 40 Copynumber: 5.6 Consensus size: 40
82828173 TATTCGAATG
82828183 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
*
82828223 ATATCCGGGCTAAGTCCCGAAGACTTAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCC--A-A---AGGCATTTGTGCTATTGACT
*
82828269 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
*
82828309 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
* * * *
82828349 ATATCCGGGATAAGACCCGAAGGCATTTGTGCAAGTTG-CT
1 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTA-TTGACT
* *
82828389 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCAAAGG
82828411 TACTTGAGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 15
0.86 0.07 0.08
Matches are distributed among these distances:
39 13 0.08
40 111 0.66
41 3 0.02
42 1 0.01
43 2 0.01
44 1 0.01
46 37 0.22
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
Found at i:82832427 original size:46 final size:45
Alignment explanation
Indices: 82832377--82832551 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
82832367 TGGTTGAGCA
82832377 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
82832423 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
82832469 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
82832515 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82832552 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 98 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:82832531 original size:92 final size:92
Alignment explanation
Indices: 82832374--82832543 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
82832364 GGATGGTTGA
* *
82832374 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82832439 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
82832466 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
82832531 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
82832544 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
92 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:82835077 original size:18 final size:18
Alignment explanation
Indices: 82835051--82835089 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
82835041 TCTTATTTAA
*
82835051 CTTTTAACCTTTCATCTT
1 CTTTAAACCTTTCATCTT
82835069 CTTTAAACCTTTCATCTT
1 CTTTAAACCTTTCATCTT
82835087 CTT
1 CTT
82835090 GTAACCCCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.18, C:0.28, G:0.00, T:0.54
Consensus pattern (18 bp):
CTTTAAACCTTTCATCTT
Found at i:82835095 original size:18 final size:17
Alignment explanation
Indices: 82835053--82835095 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 17
82835043 TTATTTAACT
82835053 TTTAACCTTTCATCTTC
1 TTTAACCTTTCATCTTC
82835070 TTTAAACCTTTCATCTTC
1 TTT-AACCTTTCATCTTC
82835088 TTGTAACC
1 TT-TAACC
82835096 CCTTTCCTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.12
18 20 0.83
19 1 0.04
ACGTcount: A:0.21, C:0.28, G:0.02, T:0.49
Consensus pattern (17 bp):
TTTAACCTTTCATCTTC
Found at i:82836806 original size:35 final size:35
Alignment explanation
Indices: 82836766--82836834 Score: 120
Period size: 35 Copynumber: 2.0 Consensus size: 35
82836756 AGGTCCTTAT
* *
82836766 ATGGTAATTAGACCATTTTACTTTAATTTGGACAG
1 ATGGTAATTAGACCATTTCACTTTAAGTTGGACAG
82836801 ATGGTAATTAGACCATTTCACTTTAAGTTGGACA
1 ATGGTAATTAGACCATTTCACTTTAAGTTGGACA
82836835 AAAAAAGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (35 bp):
ATGGTAATTAGACCATTTCACTTTAAGTTGGACAG
Found at i:82837789 original size:42 final size:42
Alignment explanation
Indices: 82837740--82837851 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 42
82837730 TGAGATTGCG
* **
82837740 TGTAAGACCATATCTGGGATATGGCATCAATATGAGACTTTC-
1 TGTAAGACCATATCTGGGATATGGCATCAATACGAGA-TCCCA
* * * **
82837782 TGTAAGACCATAGCTAGGCTATTGGCATCGGTACGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCAATACGAGATCCCA
* *
82837825 TGTAAGACCGTATCTGGTATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
82837852 TGGTATGTAA
Statistics
Matches: 55, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
42 26 0.47
43 29 0.53
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCAATACGAGATCCCA
Found at i:82839190 original size:42 final size:42
Alignment explanation
Indices: 82839090--82839237 Score: 133
Period size: 42 Copynumber: 3.5 Consensus size: 42
82839080 TGAGTTGTCG
* * *
82839090 TGTAAGACCATGTTTGGGAC-GTTGGCGTCGAT-TTGAGATTTACA
1 TGTAAGACCATGTCTGGGACAG-TAGCATCGATATT--GATTT-CA
*
82839134 TGTAAGACAATGTCTGGGACA-TAAGCATCG-TATTTGATTTCA
1 TGTAAGACCATGTCTGGGACAGT-AGCATCGATA-TTGATTTCA
* * * *
82839176 TGTAAGACCCTGTCTGAGACAGTGGCATCGATATTGATTACA
1 TGTAAGACCATGTCTGGGACAGTAGCATCGATATTGATTTCA
*
82839218 TGTAAGACCATGTCGGGGAC
1 TGTAAGACCATGTCTGGGAC
82839238 GTTGAAATTG
Statistics
Matches: 86, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
42 51 0.59
43 10 0.12
44 23 0.27
45 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACAGTAGCATCGATATTGATTTCA
Found at i:82842924 original size:40 final size:39
Alignment explanation
Indices: 82842839--82842933 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
82842829 TAAGTTGATA
*
82842839 TCGCACACTTAGTGCCTTATATAGCCGAAGCCATGCCAAC
1 TCGCACACTTAGTG-CTTATATAGCCGAAGCCATGCAAAC
* * **
82842879 TCGCACACTTAGTGCTATTTATAGCCGAAGCTATATTAAAC
1 TCGCACACTTAGTGCT-TATATAGCCGAAGCCAT-GCAAAC
82842920 -CGCACACTTAGTGC
1 TCGCACACTTAGTGC
82842934 CAATCATACT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.04
40 43 0.90
41 3 0.06
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (39 bp):
TCGCACACTTAGTGCTTATATAGCCGAAGCCATGCAAAC
Found at i:82851226 original size:22 final size:22
Alignment explanation
Indices: 82851198--82851242 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
82851188 TTTCTTATTT
82851198 AGTTATGAACTAAAACCCCTAA
1 AGTTATGAACTAAAACCCCTAA
82851220 AGTTATGAACTAAAACCCCTAA
1 AGTTATGAACTAAAACCCCTAA
82851242 A
1 A
82851243 TACCTAAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.22, G:0.09, T:0.22
Consensus pattern (22 bp):
AGTTATGAACTAAAACCCCTAA
Found at i:82853305 original size:42 final size:43
Alignment explanation
Indices: 82853177--82853307 Score: 110
Period size: 43 Copynumber: 3.1 Consensus size: 43
82853167 TTCAAAAGGA
* * * *
82853177 ACATTGACATC-TATCTGAGATATCGTGTAAGACTGTGTCTAGG
1 ACATTGGCATCGTATCT-AGATTTCGTGTAAGACTCTGTCTGGG
** * * *
82853220 ACACAGGCCTCG-AT-TGAGATTTACGTATAAGAC-CATGTATGGG
1 ACATTGGCATCGTATCT-AGATTT-CGTGTAAGACTC-TGTCTGGG
82853263 ACATTGGCATCGTATCT-GATTTCGTGTAAGACTCTGTCTGGG
1 ACATTGGCATCGTATCTAGATTTCGTGTAAGACTCTGTCTGGG
82853305 ACA
1 ACA
82853308 GAGGCATTGA
Statistics
Matches: 68, Mismatches: 14, Indels: 13
0.72 0.15 0.14
Matches are distributed among these distances:
42 26 0.38
43 39 0.57
44 2 0.03
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
ACATTGGCATCGTATCTAGATTTCGTGTAAGACTCTGTCTGGG
Found at i:82853336 original size:85 final size:85
Alignment explanation
Indices: 82853177--82853339 Score: 188
Period size: 85 Copynumber: 1.9 Consensus size: 85
82853167 TTCAAAAGGA
* *
82853177 ACATTGACATCTATCTGAGATATCGTGTAAGACTGTGTCTAGGACACAGGCCTCGATTGAGATTT
1 ACATTGACATCTATCT-AGATATCGTGTAAGACTCTGTCTAGGACACAGGCATCGATTGAGATTT
*
82853242 ACGTATAAGACCATGTATGGG
65 ACATATAAGACCATGTATGGG
* * * * *
82853263 ACATTGGCATCGTATCT-GATTTCGTGTAAGACTCTGTCTGGGACAGAGGCATTGATATTGA-A-
1 ACATTGACATC-TATCTAGATATCGTGTAAGACTCTGTCTAGGACACAGGCATCG--ATTGAGAT
*
82853325 TTACATGTAAGACCA
63 TTACATATAAGACCA
82853340 CGTCTGAGAC
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
85 44 0.68
86 11 0.17
87 10 0.15
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (85 bp):
ACATTGACATCTATCTAGATATCGTGTAAGACTCTGTCTAGGACACAGGCATCGATTGAGATTTA
CATATAAGACCATGTATGGG
Found at i:82862950 original size:40 final size:40
Alignment explanation
Indices: 82862865--82863130 Score: 367
Period size: 40 Copynumber: 6.6 Consensus size: 40
82862855 TATTCGGATG
*
82862865 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
*
82862906 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
82862946 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
82862986 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
82863029 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
82863069 ATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
82863109 ATGTCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
82863131 TACTTGGGTT
Statistics
Matches: 204, Mismatches: 15, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
39 16 0.08
40 125 0.61
41 26 0.13
43 35 0.17
44 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:82863082 original size:123 final size:121
Alignment explanation
Indices: 82862865--82863135 Score: 370
Period size: 123 Copynumber: 2.2 Consensus size: 121
82862855 TATTCGGATG
* *
82862865 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCACTTTGTGCTAGTGACTATACCCGGGCTAAGTCCCGAAGGC
* * * *
82862930 ATTTGTGCTAGTGACCATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAG-TGACT
66 ATTTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTG-CT
*
82862986 ATATCCGGGCGAAGTCCCGAAGGCA-TTTGTGCGAGTAGTTG-CTATACCCGGGCTAAGTCCCGA
1 ATATCCGGGCTAAGTCCCGAAGGCACTTTGTGC---TAG-TGACTATACCCGGGCTAAGTCCCGA
*
82863049 AGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTGCT
62 AGGCATTTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTGCT
* * *
82863109 ATGTCC-GGCTAAATCCCGAAGGTACTT
1 ATATCCGGGCTAAGTCCCGAAGGCACTT
82863136 GGGTTTGGAA
Statistics
Matches: 132, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
120 7 0.05
121 23 0.17
122 15 0.11
123 83 0.63
124 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (121 bp):
ATATCCGGGCTAAGTCCCGAAGGCACTTTGTGCTAGTGACTATACCCGGGCTAAGTCCCGAAGGC
ATTTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCATGTGTGCGAGTTGCT
Found at i:82863149 original size:83 final size:80
Alignment explanation
Indices: 82862865--82863130 Score: 383
Period size: 83 Copynumber: 3.3 Consensus size: 80
82862855 TATTCGGATG
*
82862865 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
* *
82862930 ATTTGTGCTAG-TGACC
65 ATTTGTGCGAGTTG-CT
* *
82862946 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
82863011 TTTGTGCGAGTAGTTGCT
66 TTTGTGC--G-AGTTGCT
* *
82863029 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
82863094 TGTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* *
82863109 ATGTCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
82863131 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
79 15 0.09
80 57 0.34
81 24 0.14
83 70 0.42
84 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:82866884 original size:41 final size:41
Alignment explanation
Indices: 82866818--82866939 Score: 165
Period size: 41 Copynumber: 3.0 Consensus size: 41
82866808 TAAAAGCCAC
* *
82866818 CGGTGGATCCA-GGTCGTCAACCAACCATGAGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
* * *
82866858 CGGTGGATCCACGGTCGTTAAGCAACCATGCGACCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
** *
82866899 CATTGGATACACGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
82866940 TTCTTCCTCC
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
40 11 0.16
41 59 0.84
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
Done.