Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 244 of 345
Found at i:82867230 original size:27 final size:27
Alignment explanation
Indices: 82867204--82867351 Score: 138
Period size: 27 Copynumber: 5.4 Consensus size: 27
82867194 ATCTACAAAC
*
82867204 CAAGGGTATTTCGATAATTTTGTAAAC
1 CAAGGGTATTTCGATAATTTTGTAAAT
* *
82867231 CAATGGTATTTCTATAA-TTTGTGAAAGT
1 CAAGGGTATTTCGATAATTTTGT-AAA-T
82867259 CAAGGGTATTTCTG-TAATTTTGTAAAT
1 CAAGGGTATTTC-GATAATTTTGTAAAT
* **
82867286 CAAGGGTATTTCTATAATTTTCCAAAT
1 CAAGGGTATTTCGATAATTTTGTAAAT
* * * **
82867313 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCGATAATTTTGTAAAT
* *
82867340 CGAGGATATTTC
1 CAAGGGTATTTC
82867352 AGTTATTTCA
Statistics
Matches: 99, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
26 5 0.05
27 72 0.73
28 17 0.17
29 5 0.05
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTCGATAATTTTGTAAAT
Found at i:82867269 original size:28 final size:27
Alignment explanation
Indices: 82867204--82867323 Score: 152
Period size: 27 Copynumber: 4.4 Consensus size: 27
82867194 ATCTACAAAC
* *
82867204 CAAGGGTATTTCGATAATTTTGTAAAC
1 CAAGGGTATTTCTATAATTTTGTAAAT
*
82867231 CAATGGTATTTCTATAA-TTTGTGAAAGT
1 CAAGGGTATTTCTATAATTTTGT-AAA-T
*
82867259 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCTATAATTTTGTAAAT
**
82867286 CAAGGGTATTTCTATAATTTTCCAAAT
1 CAAGGGTATTTCTATAATTTTGTAAAT
*
82867313 CAGGGGTATTT
1 CAAGGGTATTT
82867324 TGGTAATTTT
Statistics
Matches: 81, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
26 5 0.06
27 53 0.65
28 18 0.22
29 5 0.06
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTCTATAATTTTGTAAAT
Found at i:82867340 original size:54 final size:54
Alignment explanation
Indices: 82867207--82867392 Score: 182
Period size: 54 Copynumber: 3.4 Consensus size: 54
82867197 TACAAACCAA
* * * * * *
82867207 GGGTATTTCGATAATTTTGTAAACCAATGGTATTTCTATAATTTGT-GAAAGTCAA
1 GGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCTATAATTT-TCGAAA-TCAG
* *
82867262 GGGTATTTCT-GTAATTTTGTAAATCAAGGGTATTTCTATAATTTTCCAAATCAG
1 GGGTATTT-TGGTAATTTTATAAATCAAGGGTATTTCTATAATTTTCGAAATCAG
* * * * *
82867316 GGGTATTTTGGTAATTTTACAAATCGAGGATATTTC-AGTTA-TTTCAGAAATTAG
1 GGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCTA-TAATTTTC-GAAATCAG
82867370 GGGTATTTTGGTAATTTTATAAA
1 GGGTATTTTGGTAATTTTATAAA
82867393 CCAAAGGCAT
Statistics
Matches: 112, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
53 6 0.05
54 64 0.57
55 42 0.38
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAATCAAGGGTATTTCTATAATTTTCGAAATCAG
Found at i:82867386 original size:27 final size:27
Alignment explanation
Indices: 82867304--82867386 Score: 71
Period size: 27 Copynumber: 3.1 Consensus size: 27
82867294 TTTCTATAAT
*
82867304 TTTC-CAAATCAGGGGTATTTTGGTAA
1 TTTCACAAATTAGGGGTATTTTGGTAA
* * * ** *
82867330 TTTTACAAA-TCGAGGATATTTCAGTTA
1 TTTCACAAATTAG-GGGTATTTTGGTAA
*
82867357 TTTCAGAAATTAGGGGTATTTTGGTAA
1 TTTCACAAATTAGGGGTATTTTGGTAA
82867384 TTT
1 TTT
82867387 TATAAACCAA
Statistics
Matches: 40, Mismatches: 14, Indels: 5
0.68 0.24 0.08
Matches are distributed among these distances:
26 4 0.10
27 34 0.85
28 2 0.05
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.42
Consensus pattern (27 bp):
TTTCACAAATTAGGGGTATTTTGGTAA
Found at i:82870105 original size:22 final size:22
Alignment explanation
Indices: 82870068--82870132 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
82870058 GCAAATACGT
* *
82870068 TTGGCACACAGTCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
82870090 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
82870112 TTGACGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
82870133 AATAATTGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:82870333 original size:41 final size:41
Alignment explanation
Indices: 82870276--82870396 Score: 197
Period size: 41 Copynumber: 3.0 Consensus size: 41
82870266 AAAGCCACCA
*
82870276 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
*
82870317 GTGGATCCACGGTCGTCAAGCAACCATACGATCCTTAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
** *
82870358 GTGGATCCATAGTCATCAAGCAACCATGCGATCCTTAAT
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
82870397 TTCTTCCTCC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
41 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
Found at i:82870686 original size:27 final size:27
Alignment explanation
Indices: 82870634--82870888 Score: 169
Period size: 27 Copynumber: 9.4 Consensus size: 27
82870624 TTTCCCCCTA
* * * *
82870634 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
82870661 CAAGGGTATTTTGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
82870688 CAATGGTATTTCT-GTAATTTGTGA-AAAT
1 CAAGGGTATTT-TGGTAATTT-T-ACAAAT
* * **
82870716 CAAAGGTATTTTTTTGTAATTTTGTAAAT
1 CAAGGGTA--TTTTGGTAATTTTACAAAT
* *
82870745 CAGGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* * *
82870772 CAGGGGTATTTTGGCAATGTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * **
82870799 CGA-GGTATTTCGGTAATTTTATAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
82870825 CGAGGTTATTTTGGTAATTTCATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
82870852 C-AGAGTATTTTTGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
82870878 CAAGGGTATTT
1 CAAGGGTATTT
82870889 CAATAATTCT
Statistics
Matches: 181, Mismatches: 36, Indels: 22
0.76 0.15 0.09
Matches are distributed among these distances:
26 41 0.23
27 105 0.58
28 13 0.07
29 12 0.07
30 10 0.06
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:82870736 original size:30 final size:29
Alignment explanation
Indices: 82870669--82870755 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
82870659 ACCAAGGGTA
* * * *
82870669 TTTTGGTAATTTTGCAAACCAATGGTA--
1 TTTTTGTAATTTTGAAAATCAAAGGTATT
*
82870696 TTTCTGTAATTTGTGAAAATCAAAGGTATT
1 TTTTTGTAATTT-TGAAAATCAAAGGTATT
* **
82870726 TTTTTGTAATTTTGTAAATCAGGGGTATT
1 TTTTTGTAATTTTGAAAATCAAAGGTATT
82870755 T
1 T
82870756 CTGTAATTTT
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
27 10 0.21
28 12 0.25
29 15 0.31
30 11 0.23
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.46
Consensus pattern (29 bp):
TTTTTGTAATTTTGAAAATCAAAGGTATT
Found at i:82870888 original size:53 final size:54
Alignment explanation
Indices: 82870654--82870888 Score: 199
Period size: 53 Copynumber: 4.3 Consensus size: 54
82870644 TTGGTAAATC
* * *
82870654 TACAAACCAAGGGTATTTTGGTAATTTTGCAAACCA-ATGGTATTTCTGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAATCAGA-GGTATTTCTGTAATTT
* * ** *
82870708 GTGA-AAATCAAAGGTATTTTTTTGTAATTTTGTAAATCAGGGGTATTTCTGTAATTT
1 -T-ACAAATCAAGGGTA--TTTTGGTAATTTTACAAATCAGAGGTATTTCTGTAATTT
* * * * *
82870765 TCCAAATCAGGGGTATTTTGGCAATGTTACAAATC-GAGGTATTTCGGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAATCAGAGGTATTTCTGTAATTT
* ** * * * * *
82870818 TATAGGTCGAGGTTATTTTGGTAATTTCATAAATCAGA-GTATTTTTGTAATTT
1 TACAAATCAAGGGTATTTTGGTAATTTTACAAATCAGAGGTATTTCTGTAATTT
*
82870871 TACAAACCAAGGGTATTT
1 TACAAATCAAGGGTATTT
82870889 CAATAATTCT
Statistics
Matches: 139, Mismatches: 35, Indels: 14
0.74 0.19 0.07
Matches are distributed among these distances:
53 65 0.47
54 17 0.12
55 11 0.08
56 12 0.09
57 34 0.24
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTTGGTAATTTTACAAATCAGAGGTATTTCTGTAATTT
Found at i:82876875 original size:49 final size:49
Alignment explanation
Indices: 82876821--82877088 Score: 205
Period size: 49 Copynumber: 5.6 Consensus size: 49
82876811 GCCAATGTTG
* *
82876821 TGTCCCAGACAGGTCTTACACTAGCTCTCTTCTATC-GGTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCTTCTATCAAGTCT-GATGCCA
* * * * * *
82876870 AGTCCCAGACAGGTCTTACA-TTG-ACAC-GC-AACAAG-CTGATGCCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCTTCTATCAAGTCTGATGCCA
* * * * ** * *
82876914 TGTCCCAGATAGGTCTTACACT-GAATTTCATAAATCAAGTCTGATGTCG
1 TGTCCCAGACAGGTCTTACACTAG-CTCTCTTCTATCAAGTCTGATGCCA
* *
82876963 TGTCCCAGACAGGTCTGACACTAGCTCTCTTCTATC-AGTGTCGATGCCA
1 TGTCCCAGACAGGTCTTACACTAGCTCTCTTCTATCAAGTCT-GATGCCA
* * * * *
82877012 TGTCCCAGACAGGTCTTACACTAGCT-TGCATATCTCAAGGCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTAGCTCT-CTTCTATCAAGTCTGATGCCA
* *
82877060 TGTCCCAGACATGTCTTACACTGGCTCTC
1 TGTCCCAGACAGGTCTTACACTAGCTCTC
82877089 GTAATGTGGC
Statistics
Matches: 170, Mismatches: 37, Indels: 25
0.73 0.16 0.11
Matches are distributed among these distances:
44 26 0.15
45 4 0.02
46 3 0.02
47 2 0.01
48 39 0.23
49 93 0.55
50 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (49 bp):
TGTCCCAGACAGGTCTTACACTAGCTCTCTTCTATCAAGTCTGATGCCA
Found at i:82877026 original size:142 final size:142
Alignment explanation
Indices: 82876765--82877031 Score: 408
Period size: 142 Copynumber: 1.9 Consensus size: 142
82876755 CATCAAAGTC
* * *
82876765 GATGACATGTCCCAAACAAGTCTTACACTGACTTTAATATATCAAGGCCAATGTTGTGTCCCAGA
1 GATGACATGTCCCAAACAAGTCTTACACTGAATTTAATAAATCAAGGCCAATGTCGTGTCCCAGA
* *
82876830 CAGGTCTTACACTAGCTCTCTTCTATCGGTGTCGATGCCAAGTCCCAGACAGGTCTTACATTGAC
66 CAGGTCTGACACTAGCTCTCTTCTATCAGTGTCGATGCCAAGTCCCAGACAGGTCTTACATTGAC
82876895 ACGCAACAAGCT
131 ACGCAACAAGCT
* * * * * * **
82876907 GATGCCATGTCCCAGATAGGTCTTACACTGAATTTCATAAATCAAGTCTGATGTCGTGTCCCAGA
1 GATGACATGTCCCAAACAAGTCTTACACTGAATTTAATAAATCAAGGCCAATGTCGTGTCCCAGA
*
82876972 CAGGTCTGACACTAGCTCTCTTCTATCAGTGTCGATGCCATGTCCCAGACAGGTCTTACA
66 CAGGTCTGACACTAGCTCTCTTCTATCAGTGTCGATGCCAAGTCCCAGACAGGTCTTACA
82877032 CTAGCTTGCA
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
142 111 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (142 bp):
GATGACATGTCCCAAACAAGTCTTACACTGAATTTAATAAATCAAGGCCAATGTCGTGTCCCAGA
CAGGTCTGACACTAGCTCTCTTCTATCAGTGTCGATGCCAAGTCCCAGACAGGTCTTACATTGAC
ACGCAACAAGCT
Found at i:82877050 original size:98 final size:97
Alignment explanation
Indices: 82876907--82877088 Score: 240
Period size: 98 Copynumber: 1.9 Consensus size: 97
82876897 GCAACAAGCT
* * * * *
82876907 GATGCCATGTCCCAGATAGGTCTTACACTGAATTTCATAAATCAAGTCTGATGTCGTGTCCCAGA
1 GATGCCATGTCCCAGACAGGTCTTACACTGAATTGCATAAATCAAGGCCGATG-CATGTCCCAGA
82876972 CAGGTCTGACACTAGCTCTCTTCTATCAGTGTC
65 CAGGTCTGACACTAGCTCTCTTCTATCAGTGTC
* **
82877005 GATGCCATGTCCCAGACAGGTCTTACACT-AGCTTGCATATCTCAAGGCCGATGCATGTCCCAGA
1 GATGCCATGTCCCAGACAGGTCTTACACTGA-ATTGCATAAATCAAGGCCGATGCATGTCCCAGA
* * *
82877069 CATGTCTTACACTGGCTCTC
65 CAGGTCTGACACTAGCTCTC
82877089 GTAATGTGGC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
97 28 0.39
98 44 0.61
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (97 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGAATTGCATAAATCAAGGCCGATGCATGTCCCAGAC
AGGTCTGACACTAGCTCTCTTCTATCAGTGTC
Found at i:82910186 original size:38 final size:38
Alignment explanation
Indices: 82910122--82910201 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
82910112 GATGTGTATT
* * *
82910122 CGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCTGCAGGCCTAGTGCTGGTATTATATC
* *
82910160 CGGGATAAATCCTGTAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCTGCAGGCCTAGTGCTGGTATTATATC
82910198 CGGG
1 CGGG
82910202 CCTTCGTGCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.33
Consensus pattern (38 bp):
CGGGATAAATCCTGCAGGCCTAGTGCTGGTATTATATC
Found at i:82910242 original size:43 final size:43
Alignment explanation
Indices: 82910194--82910361 Score: 255
Period size: 43 Copynumber: 3.9 Consensus size: 43
82910184 GCTGGTATTA
82910194 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
82910237 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * * **
82910280 TATTCAGGCCTTCATGCCTAGCAGGCTTCGTGCCATTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
* * * *
82910323 TATTCGAGCCTTCGTGCCTTGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGA
82910362 AATGATATGT
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 111 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTAGTGCCGGTGATGTG
Found at i:82912666 original size:165 final size:165
Alignment explanation
Indices: 82912394--82912718 Score: 632
Period size: 165 Copynumber: 2.0 Consensus size: 165
82912384 GTGTTATTAT
*
82912394 TATAAGATTTCATTGTAGTATGATTGGAATAAATTCAAGGATAAATCCATACGATGTTATTCTTC
1 TATAAGATTTCATTGTAGTATGATCGGAATAAATTCAAGGATAAATCCATACGATGTTATTCTTC
*
82912459 TGTTTCTATTGAATGGTATTCCATTTTATGAAAGTATATGAGATGTGATAGTTCAAAATGAGTTC
66 TGTTTCTATTGAATGGTATTCCATTTTATAAAAGTATATGAGATGTGATAGTTCAAAATGAGTTC
82912524 AGAGTAATAGTTATTTGATTTTGGATATCTAGACA
131 AGAGTAATAGTTATTTGATTTTGGATATCTAGACA
82912559 TATAAGATTTCATTGTAGTATGATCGGAATAAATTCAAGGATAAATCCATACGATGTTATTCTTC
1 TATAAGATTTCATTGTAGTATGATCGGAATAAATTCAAGGATAAATCCATACGATGTTATTCTTC
82912624 TGTTTCTATTGAATGGTATTCCATTTTATAAAAGTATATGAGATGTGATAGTTCAAAATGAGTTC
66 TGTTTCTATTGAATGGTATTCCATTTTATAAAAGTATATGAGATGTGATAGTTCAAAATGAGTTC
82912689 AGAGTAATAGTTATTTGATTTTGGATATCT
131 AGAGTAATAGTTATTTGATTTTGGATATCT
82912719 GGATATCTGG
Statistics
Matches: 158, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
165 158 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (165 bp):
TATAAGATTTCATTGTAGTATGATCGGAATAAATTCAAGGATAAATCCATACGATGTTATTCTTC
TGTTTCTATTGAATGGTATTCCATTTTATAAAAGTATATGAGATGTGATAGTTCAAAATGAGTTC
AGAGTAATAGTTATTTGATTTTGGATATCTAGACA
Found at i:82912723 original size:8 final size:8
Alignment explanation
Indices: 82912710--82912744 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
82912700 TATTTGATTT
82912710 TGGATATC
1 TGGATATC
82912718 TGGATATC
1 TGGATATC
*
82912726 TGGATATT
1 TGGATATC
82912734 TGGATATC
1 TGGATATC
82912742 TGG
1 TGG
82912745 CATTGGACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.23, C:0.09, G:0.29, T:0.40
Consensus pattern (8 bp):
TGGATATC
Found at i:82921438 original size:20 final size:20
Alignment explanation
Indices: 82921413--82921452 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
82921403 AATATTTTCC
*
82921413 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
82921433 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
82921453 TCATTTTACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:82921458 original size:34 final size:35
Alignment explanation
Indices: 82921401--82921467 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
82921391 CAAACACTAG
*
82921401 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
82921436 AAAACATTTTCCAG-AAATCATTTTACAGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
82921468 TATTTTACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 18 0.58
35 13 0.42
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:82921881 original size:14 final size:13
Alignment explanation
Indices: 82921850--82921898 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
82921840 CAGAACCCCG
*
82921850 AACCTTGAACTCA
1 AACCTTGAACTTA
82921863 AACCTTGAATCTTA
1 AACCTTGAA-CTTA
* *
82921877 AACCTTAAACCCTA
1 AACCTTGAA-CTTA
82921891 AACCTTGA
1 AACCTTGA
82921899 GGTTTAGAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
13 9 0.30
14 21 0.70
ACGTcount: A:0.39, C:0.29, G:0.06, T:0.27
Consensus pattern (13 bp):
AACCTTGAACTTA
Found at i:82921987 original size:27 final size:27
Alignment explanation
Indices: 82921948--82922001 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
82921938 GGGTTTAGGT
82921948 TTTGGGTTCAAGGTTCAAGGGTTTGAG
1 TTTGGGTTCAAGGTTCAAGGGTTTGAG
* *
82921975 TTTGGGTTTAAGGTTTAAGGGTTTGAG
1 TTTGGGTTCAAGGTTCAAGGGTTTGAG
82922002 GTTACTAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.19, C:0.04, G:0.37, T:0.41
Consensus pattern (27 bp):
TTTGGGTTCAAGGTTCAAGGGTTTGAG
Found at i:82922706 original size:21 final size:21
Alignment explanation
Indices: 82922679--82922735 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
82922669 AAACTCCAAT
*
82922679 CCCAAAACCCCAAACACTAAA
1 CCCAAAACCACAAACACTAAA
* * * *
82922700 TCTAAAATCACAAACATTAAA
1 CCCAAAACCACAAACACTAAA
*
82922721 CCCAAAACCATAAAC
1 CCCAAAACCACAAAC
82922736 TCAAATGTCA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.54, C:0.33, G:0.00, T:0.12
Consensus pattern (21 bp):
CCCAAAACCACAAACACTAAA
Found at i:82922825 original size:28 final size:27
Alignment explanation
Indices: 82922789--82922857 Score: 68
Period size: 28 Copynumber: 2.5 Consensus size: 27
82922779 AGAACCATGA
* * *
82922789 AACCTAAACCTGAAA-TTTGTAACCCAT
1 AACCCAAACCTGAAACCTTG-AACCCAG
* *
82922816 AACTCCAAACCTTAAACCTTGAACCCGG
1 AAC-CCAAACCTGAAACCTTGAACCCAG
82922844 AACCCAAACCTGAA
1 AACCCAAACCTGAA
82922858 TCTTAAACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
27 13 0.38
28 18 0.53
29 3 0.09
ACGTcount: A:0.41, C:0.32, G:0.09, T:0.19
Consensus pattern (27 bp):
AACCCAAACCTGAAACCTTGAACCCAG
Found at i:82922940 original size:27 final size:28
Alignment explanation
Indices: 82922910--82922965 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
82922900 TTCAGGATTT
*
82922910 AAGGTTTAAGATTTTGGGTTCGA-GTTC
1 AAGGTTTAAGATTCTGGGTTCGAGGTTC
* *
82922937 AAGGTTTAAGGTTCTGGGTTTGAGGTTC
1 AAGGTTTAAGATTCTGGGTTCGAGGTTC
82922965 A
1 A
82922966 TGGTAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.21, C:0.07, G:0.32, T:0.39
Consensus pattern (28 bp):
AAGGTTTAAGATTCTGGGTTCGAGGTTC
Found at i:82925162 original size:16 final size:15
Alignment explanation
Indices: 82925143--82925174 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
82925133 TTTAAAATGG
*
82925143 TTTTTAAAAAATAAT
1 TTTTTTAAAAATAAT
82925158 TTTTTTAAAAATAAT
1 TTTTTTAAAAATAAT
82925173 TT
1 TT
82925175 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTTTTAAAAATAAT
Found at i:82939687 original size:48 final size:48
Alignment explanation
Indices: 82939565--82939704 Score: 208
Period size: 48 Copynumber: 2.9 Consensus size: 48
82939555 TAAGGTTATG
* *
82939565 TGTGATCCCATGTAAGACCATGTATGGGACATGGAATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
*
82939613 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* * * * *
82939661 TGTGATCCTATGTAAGACCTTATCTGGGATATAGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
82939705 TTACTATGTG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
Found at i:82950438 original size:27 final size:27
Alignment explanation
Indices: 82950415--82950692 Score: 213
Period size: 27 Copynumber: 10.3 Consensus size: 27
82950405 TAGAATTATT
* *
82950415 GAAATGCCCTCAACTTGTAAAATTACC
1 GAAATACCCTCGACTTGTAAAATTACC
* *
82950442 GAAATACGCTCGACTTATAAAATTACC
1 GAAATACCCTCGACTTGTAAAATTACC
* *
82950469 GAAATACCCTCGATTTGTAAAATTAAC
1 GAAATACCCTCGACTTGTAAAATTACC
* * **
82950496 AAAATA-CATCTGGTTTGTAAAATTACC
1 GAAATACCCTC-GACTTGTAAAATTACC
* * * * *
82950523 AAAATACCATTGATTTGTGAAATTACC
1 GAAATACCCTCGACTTGTAAAATTACC
* * *
82950550 AAAATACCTTCGACTTGTAAAATTATC
1 GAAATACCCTCGACTTGTAAAATTACC
* *
82950577 AAAATACCCTCGACTTGTAAAATTACT
1 GAAATACCCTCGACTTGTAAAATTACC
* ** *
82950604 AAAATACCCTTAATTTGTAAAATTACC
1 GAAATACCCTCGACTTGTAAAATTACC
* * * *
82950631 AAAACATCCCT-AATTTAG-AAAATTACC
1 GAAATA-CCCTCGACTT-GTAAAATTACC
* * * *
82950658 CAAATACCCT-GATTTGGAAAATTACA
1 GAAATACCCTCGACTTGTAAAATTACC
82950684 GAAATACCC
1 GAAATACCC
82950693 CTGATTTACA
Statistics
Matches: 213, Mismatches: 33, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.00
26 27 0.13
27 177 0.83
28 8 0.04
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
GAAATACCCTCGACTTGTAAAATTACC
Found at i:82950705 original size:27 final size:27
Alignment explanation
Indices: 82950460--82950774 Score: 123
Period size: 27 Copynumber: 11.6 Consensus size: 27
82950450 CTCGACTTAT
* *
82950460 AAAATTACCGAAATA-CCCTCGATTTGT
1 AAAATTACAGAAATACCCCT-GATTTGC
** * *
82950487 AAAATTAACA-AAATACATCTGGTTTGT
1 AAAATT-ACAGAAATACCCCTGATTTGC
** *
82950514 AAAATTACCA-AAATACCATTGATTTGT
1 AAAATTA-CAGAAATACCCCTGATTTGC
* * * *
82950541 GAAATTACCA-AAATA-CCTTCGACTTGT
1 AAAATTA-CAGAAATACCCCT-GATTTGC
* *
82950568 AAAATTATCA-AAATA-CCCTCGACTTGT
1 AAAATTA-CAGAAATACCCCT-GATTTGC
* * *
82950595 AAAATTACTA-AAATACCCTTAATTTGT
1 AAAATTAC-AGAAATACCCCTGATTTGC
* * *
82950622 AAAATTACCA-AAACATCCCTAATTTAG-
1 AAAATTA-CAGAAATACCCCTGATTT-GC
** *
82950649 AAAATTACCCAAATA-CCCTGATTTGG
1 AAAATTACAGAAATACCCCTGATTTGC
*
82950675 AAAATTACAGAAATACCCCTGATTTAC
1 AAAATTACAGAAATACCCCTGATTTGC
* * *
82950702 AAAATTATAGAAATATACCTTGACTTT-C
1 AAAATTACAGAAATA-CCCCTGA-TTTGC
* * ** *
82950730 AAAATTTTCAAAAATACCATTGGTTTGC
1 AAAA-TTACAGAAATACCCCTGATTTGC
*
82950758 AAAATTACCGAAATACC
1 AAAATTACAGAAATACC
82950775 TTGGTTTGTA
Statistics
Matches: 234, Mismatches: 39, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.00
26 27 0.12
27 167 0.71
28 28 0.12
29 11 0.05
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACAGAAATACCCCTGATTTGC
Found at i:82950716 original size:53 final size:53
Alignment explanation
Indices: 82950595--82950716 Score: 122
Period size: 53 Copynumber: 2.3 Consensus size: 53
82950585 CTCGACTTGT
* * *
82950595 AAAATTACTAAAATACCCTTAATTTGTAAAATTACCAAAACATCCCTAATTTAG
1 AAAATTA-TAAAATACCCTTAATTTGGAAAATTACCAAAACACCCCTAATTTAC
** * * *
82950649 AAAATTACCCAAATACCC-TGATTTGGAAAATTA-CAGAAATACCCCTGATTTAC
1 AAAATTA-TAAAATACCCTTAATTTGGAAAATTACCA-AAACACCCCTAATTTAC
82950702 AAAATTATAGAAATA
1 AAAATTATA-AAATA
82950717 TACCTTGACT
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.04
53 38 0.68
54 16 0.29
ACGTcount: A:0.47, C:0.18, G:0.07, T:0.29
Consensus pattern (53 bp):
AAAATTATAAAATACCCTTAATTTGGAAAATTACCAAAACACCCCTAATTTAC
Found at i:82951576 original size:22 final size:22
Alignment explanation
Indices: 82951532--82951578 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
82951522 GTTGCTGCGA
*
82951532 TGTTTACAGCTATGTGCTGTCC
1 TGTTTACAGCTATGTGCTATCC
*
82951554 TGTTTACAGCTATGTGTTATCC
1 TGTTTACAGCTATGTGCTATCC
82951576 TGT
1 TGT
82951579 CTACGGCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.19, G:0.21, T:0.45
Consensus pattern (22 bp):
TGTTTACAGCTATGTGCTATCC
Found at i:82954357 original size:26 final size:27
Alignment explanation
Indices: 82954233--82954463 Score: 171
Period size: 27 Copynumber: 8.6 Consensus size: 27
82954223 GTAGGCTAGT
* * *
82954233 ATTACTGAAATGCCCTCGACCTGTAAA
1 ATTACCGAAATACCCTCGACTTGTAAA
* *
82954260 ATTACTGAAATACCCTCGACTTATAAA
1 ATTACCGAAATACCCTCGACTTGTAAA
* ** * *
82954287 ATTACCAAAATACCCTTAATTTGTGAA
1 ATTACCGAAATACCCTCGACTTGTAAA
* * *
82954314 CTTACCGAAATATCCTCGACCTGTAAA
1 ATTACCGAAATACCCTCGACTTGTAAA
* *
82954341 ATTATCGAAA-ACCCTCGAATTGTAAA
1 ATTACCGAAATACCCTCGACTTGTAAA
* * * * *
82954367 ATTATCTAAATATCCTCGATTTTTAAA
1 ATTACCGAAATACCCTCGACTTGTAAA
* * *
82954394 ATTACCAAAATA-CCTCTAAGTTAG-AAA
1 ATTACCGAAATACCCTC-GACTT-GTAAA
* * * *
82954421 ATTACCCAAATACCCTTGATTTGGAAA
1 ATTACCGAAATACCCTCGACTTGTAAA
*
82954448 ATTACAGAAATACCCT
1 ATTACCGAAATACCCT
82954464 TGATTTACAA
Statistics
Matches: 161, Mismatches: 38, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
26 27 0.17
27 131 0.81
28 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
ATTACCGAAATACCCTCGACTTGTAAA
Found at i:82954449 original size:107 final size:107
Alignment explanation
Indices: 82954245--82954451 Score: 240
Period size: 107 Copynumber: 1.9 Consensus size: 107
82954235 TACTGAAATG
* *
82954245 CCCTCGACCTGTAAAATTACTGAAATACCCTCGACTTATAAAATTACCAAAATACCCTTAATTTG
1 CCCTCGAACTGTAAAATTACTGAAATACCCTCGACTTATAAAATTACCAAAATACCCTTAATTAG
* * * * *
82954310 TGAACTTACCGAAATATCCTCGACCTGTAAAATTATCGAAAA
66 TAAAATTACCCAAATACCCTCGACCTGGAAAATTATCGAAAA
* * * *
82954352 CCCTCGAATTGTAAAATTATCT-AAATATCCTCGATTTTTAAAATTACCAAAATA-CCTCTAAGT
1 CCCTCGAACTGTAAAATTA-CTGAAATACCCTCGACTTATAAAATTACCAAAATACCCT-TAA-T
* **
82954415 TAG-AAAATTACCCAAATACCCTTGATTTGGAAAATTA
63 TAGTAAAATTACCCAAATACCCTCGACCTGGAAAATTA
82954452 CAGAAATACC
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
106 3 0.04
107 75 0.90
108 5 0.06
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (107 bp):
CCCTCGAACTGTAAAATTACTGAAATACCCTCGACTTATAAAATTACCAAAATACCCTTAATTAG
TAAAATTACCCAAATACCCTCGACCTGGAAAATTATCGAAAA
Found at i:82954464 original size:27 final size:27
Alignment explanation
Indices: 82954254--82954554 Score: 132
Period size: 27 Copynumber: 11.1 Consensus size: 27
82954244 GCCCTCGACC
* * *
82954254 TGTAAAATTACTGAAATACCCTCGACT
1 TGTAAAATTACAGAAATACCCTTGATT
* *
82954281 TATAAAATTACCA-AAATACCCTTAATT
1 TGTAAAATTA-CAGAAATACCCTTGATT
* * * * * **
82954308 TGTGAACTTACCGAAATATCCTCGACC
1 TGTAAAATTACAGAAATACCCTTGATT
* *
82954335 TGTAAAATTATC-GAAA-ACCCTCGAAT
1 TGTAAAATTA-CAGAAATACCCTTGATT
* * *
82954361 TGTAAAATTATC-TAAATATCCTCGATT
1 TGTAAAATTA-CAGAAATACCCTTGATT
* *
82954388 TTTAAAATTACCA-AAATA-CCTCTAAGTT
1 TGTAAAATTA-CAGAAATACCCT-TGA-TT
* **
82954416 AG-AAAATTACCCAAATACCCTTGATT
1 TGTAAAATTACAGAAATACCCTTGATT
*
82954442 TGGAAAATTACAGAAATACCCTTGATT
1 TGTAAAATTACAGAAATACCCTTGATT
** * * *
82954469 TACAATATTATAGAAACACCCTTGACTT
1 TGTAAAATTACAGAAATACCCTTGA-TT
* * * * *
82954497 T-CAAAATTTTCAAAAATACCATTGGTT
1 TGTAAAA-TTACAGAAATACCCTTGATT
* ** * *
82954524 TGCAAAATTATTGAAATACACTTGGTT
1 TGTAAAATTACAGAAATACCCTTGATT
82954551 TGTA
1 TGTA
82954555 GATTTACCAA
Statistics
Matches: 209, Mismatches: 52, Indels: 26
0.73 0.18 0.09
Matches are distributed among these distances:
26 30 0.14
27 152 0.73
28 27 0.13
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACAGAAATACCCTTGATT
Found at i:82954857 original size:41 final size:41
Alignment explanation
Indices: 82954812--82954928 Score: 207
Period size: 41 Copynumber: 2.9 Consensus size: 41
82954802 GGAGGAAGAA
82954812 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
82954853 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
* * *
82954894 ATTAAGGATCACATGGTTGCTTGACGACTGTGGAT
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGAT
82954929 TGACAGGTGG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.26
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
Found at i:82955369 original size:22 final size:22
Alignment explanation
Indices: 82955341--82955387 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
82955331 GTTGTTGCGA
82955341 TGTTTACAGCTATGTACTATCC
1 TGTTTACAGCTATGTACTATCC
*
82955363 TGTTTACGGCTATGTACTATCC
1 TGTTTACAGCTATGTACTATCC
82955385 TGT
1 TGT
82955388 CTATGGCGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (22 bp):
TGTTTACAGCTATGTACTATCC
Found at i:82958274 original size:55 final size:55
Alignment explanation
Indices: 82958208--82958315 Score: 128
Period size: 55 Copynumber: 2.0 Consensus size: 55
82958198 GTGGACAGGT
* *
82958208 AGGCCACACGGGTGTGCGCCATGGCCGTGTT-AAAATGACAGTGTAGTCCACGGGC
1 AGGCAACACGGGCGTGCGCCATGGCCGTGTTGAAAA-GACAGTGTAGTCCACGGGC
*** * * *
82958263 AGGCAACACGGGCGTTTTCCATGGCCGTGTTGATAAGTCAGTGTTGTCCACGG
1 AGGCAACACGGGCGTGCGCCATGGCCGTGTTGAAAAGACAGTGTAGTCCACGG
82958316 TTGAAGGGCA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
55 41 0.93
56 3 0.07
ACGTcount: A:0.20, C:0.24, G:0.33, T:0.22
Consensus pattern (55 bp):
AGGCAACACGGGCGTGCGCCATGGCCGTGTTGAAAAGACAGTGTAGTCCACGGGC
Found at i:82961032 original size:43 final size:43
Alignment explanation
Indices: 82960922--82961045 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
82960912 TCGTACAATC
* *
82960922 CCAACGTCCCAGACGTGGTCTTACATGTA-ATCACATATTGATG
1 CCAACATCCCAGACGTGGTCTTACATG-AGAACACATATTGATG
* *
82960965 -CTACAGTCCTAGACAG-GGTCTTACATGAGAACACATATTGATG
1 CCAACA-TCCCAGAC-GTGGTCTTACATGAGAACACATATTGATG
*
82961008 CCAACATCCCAGACGTGGTTTTACATGAGAACACATAT
1 CCAACATCCCAGACGTGGTCTTACATGAGAACACATAT
82961046 AAAAAATCCT
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 5 0.07
43 59 0.86
44 5 0.07
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
CCAACATCCCAGACGTGGTCTTACATGAGAACACATATTGATG
Found at i:82970662 original size:11 final size:11
Alignment explanation
Indices: 82970646--82970670 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
82970636 TTATATATAC
82970646 TAATAAAATAA
1 TAATAAAATAA
82970657 TAATAAAATAA
1 TAATAAAATAA
82970668 TAA
1 TAA
82970671 AATATCATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:82972611 original size:25 final size:25
Alignment explanation
Indices: 82972574--82972624 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
82972564 TCTATGGAAG
**
82972574 AAAATGATTCATGGTTGTAAAATAA
1 AAAATGACCCATGGTTGTAAAATAA
82972599 AAAATGACCCATGGTTGTAAAATAA
1 AAAATGACCCATGGTTGTAAAATAA
82972624 A
1 A
82972625 CAACTTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.49, C:0.08, G:0.16, T:0.27
Consensus pattern (25 bp):
AAAATGACCCATGGTTGTAAAATAA
Found at i:82973428 original size:50 final size:50
Alignment explanation
Indices: 82973354--82973593 Score: 279
Period size: 50 Copynumber: 4.8 Consensus size: 50
82973344 TGCTAGGGAT
* * *
82973354 ATATAAGAGCTAGAGTAAGACCATGTCTAGGACATGGCATCGGGCTCGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAG
* * *
82973404 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGAATCAGCCTCGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAG
*
82973454 ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAG
* * * * * *
82973504 ATACGAGAG-TCAGTGTAAGACCATGCCTGGGACATGGCATCGACTTTGAG
1 ATATGAGAGCT-AGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAG
* * * * **
82973554 --GTGTGAGCCAGTGTAAGACCATGTCCAATACATGGCATCG
1 ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCG
82973594 ATACCTTTCC
Statistics
Matches: 162, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
48 30 0.19
49 1 0.01
50 131 0.81
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (50 bp):
ATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGAG
Found at i:82988544 original size:19 final size:19
Alignment explanation
Indices: 82988497--82988534 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
82988487 AAAGAGACTG
82988497 AACAGAAAGTGAAATTGAT
1 AACAGAAAGTGAAATTGAT
82988516 AACAGAAAGTGAAATTGAT
1 AACAGAAAGTGAAATTGAT
82988535 TCGTGAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AACAGAAAGTGAAATTGAT
Found at i:82997132 original size:23 final size:22
Alignment explanation
Indices: 82997101--82997148 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
82997091 AAAGGTATAA
82997101 TTTTAATTTTTAATATTTATATT
1 TTTTAATTTTTAATATTTAT-TT
* * *
82997124 TTTTTATTTTTACTCTTTATTT
1 TTTTAATTTTTAATATTTATTT
82997146 TTT
1 TTT
82997149 AGTTAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (22 bp):
TTTTAATTTTTAATATTTATTT
Found at i:82997417 original size:12 final size:12
Alignment explanation
Indices: 82997400--82997427 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
82997390 CATTATTAAA
82997400 AATTAATATTTT
1 AATTAATATTTT
82997412 AATTAATATTTT
1 AATTAATATTTT
82997424 AATT
1 AATT
82997428 TTTAAAGACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
AATTAATATTTT
Found at i:82997469 original size:15 final size:15
Alignment explanation
Indices: 82997451--82997491 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
82997441 AATCAAATTT
82997451 AAATAATAAA-AATAA
1 AAAT-ATAAATAATAA
82997466 AAAT-TAAATTAATAA
1 AAATATAAA-TAATAA
82997481 AAATATAAATA
1 AAATATAAATA
82997492 TTAACTACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.17
15 15 0.65
16 4 0.17
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
AAATATAAATAATAA
Found at i:82997478 original size:21 final size:22
Alignment explanation
Indices: 82997445--82997495 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
82997435 ACTAATAATC
82997445 AAAT-TTAAATAATAAAAATA-
1 AAATATTAAATAATAAAAATAT
82997465 AAA-ATTAAATTAATAAAAATAT
1 AAATATTAAA-TAATAAAAATAT
82997487 AAATATTAA
1 AAATATTAA
82997496 CTACTAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 8 0.30
21 11 0.41
22 3 0.11
23 5 0.19
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (22 bp):
AAATATTAAATAATAAAAATAT
Found at i:83000184 original size:46 final size:45
Alignment explanation
Indices: 83000093--83000214 Score: 142
Period size: 46 Copynumber: 2.7 Consensus size: 45
83000083 GATATGTGTA
*
83000093 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCGG-CACATTACGAGAG
83000139 -TCAGTGTAAGACATGTCTGGGACATGCATC-G-ACATTGAGACGAGAG
1 CT-AGTGTAAGACATGTCTGGGACATGCATCGGCACATT---ACGAGAG
* * *
83000185 CTACTGTAAGATATGTGTGGGACATGCATC
1 CTAGTGTAAGACATGTCTGGGACATGCATC
83000215 AGCCTCGAGA
Statistics
Matches: 67, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.07
45 2 0.03
46 59 0.88
47 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (45 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCACATTACGAGAG
Found at i:83015219 original size:35 final size:35
Alignment explanation
Indices: 83015180--83015292 Score: 163
Period size: 35 Copynumber: 3.2 Consensus size: 35
83015170 GCACCAGTCA
* *
83015180 AAGGCGACCTTAAAAAGGTTGGGATGGACTCGTCT
1 AAGGCAACCTTAAAAAGGTTGGGATAGACTCGTCT
*
83015215 AAGGCAAACTTAAAAAGGTTGGGATAGACTCGTCT
1 AAGGCAACCTTAAAAAGGTTGGGATAGACTCGTCT
* * * *
83015250 AAGGTACCCTTAAAAAGGTTGGGATAGACTCATTT
1 AAGGCAACCTTAAAAAGGTTGGGATAGACTCGTCT
83015285 AAGGCAAC
1 AAGGCAAC
83015293 TTTGTAATGG
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 68 1.00
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.23
Consensus pattern (35 bp):
AAGGCAACCTTAAAAAGGTTGGGATAGACTCGTCT
Found at i:83015953 original size:35 final size:35
Alignment explanation
Indices: 83015914--83016077 Score: 215
Period size: 35 Copynumber: 4.7 Consensus size: 35
83015904 CTCAAAGGTG
*
83015914 ACCTTAAAAATGTTGGGATAGACCTGTCTAAGGCA
1 ACCTTAAAAAGGTTGGGATAGACCTGTCTAAGGCA
* * *
83015949 ACCTTAAAAGGGTTGGGATAGACCTATCTAAGTCA
1 ACCTTAAAAAGGTTGGGATAGACCTGTCTAAGGCA
* * *
83015984 ACCTTAAAAGGGTTGGAATAGA-CTCGTCTAAGTCA
1 ACCTTAAAAAGGTTGGGATAGACCT-GTCTAAGGCA
*
83016019 ACCTTAAAAAGGTTGGGGTAGATCC-GTCTAAGGCA
1 ACCTTAAAAAGGTTGGGATAGA-CCTGTCTAAGGCA
*
83016054 ACCTTAGAAAGGTTGGGATAGACC
1 ACCTTAAAAAGGTTGGGATAGACC
83016078 CATCTAATGC
Statistics
Matches: 114, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
34 4 0.04
35 109 0.96
37 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (35 bp):
ACCTTAAAAAGGTTGGGATAGACCTGTCTAAGGCA
Found at i:83020105 original size:16 final size:15
Alignment explanation
Indices: 83020080--83020113 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
83020070 TAATAAAGGT
83020080 CACACGGCCAAGTCA
1 CACACGGCCAAGTCA
83020095 CACACCGGCCAAGTCA
1 CACA-CGGCCAAGTCA
83020111 CAC
1 CAC
83020114 GCCCGTGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.32, C:0.44, G:0.18, T:0.06
Consensus pattern (15 bp):
CACACGGCCAAGTCA
Found at i:83027595 original size:55 final size:55
Alignment explanation
Indices: 83027511--83027638 Score: 159
Period size: 55 Copynumber: 2.3 Consensus size: 55
83027501 TCGATCCTGC
83027511 TAAAACAACACGGGCGTGCGACACGCCCGTGTGGAAGAACC-GTGGGCGAACCTAT
1 TAAAACAACACGGGCGTGCGACACGCCCGTGTGGAA-AACCTGTGGGCGAACCTAT
* ** * * *
83027566 TAAAACAGCACGGGCGTTTGACACGCCCGTGTGGAACACCTGTGGTCGAACCTGT
1 TAAAACAACACGGGCGTGCGACACGCCCGTGTGGAAAACCTGTGGGCGAACCTAT
** *
83027621 TAAATTAACACGAGCGTG
1 TAAAACAACACGGGCGTG
83027639 GGATTTGCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 3 0.05
55 58 0.95
ACGTcount: A:0.28, C:0.26, G:0.29, T:0.17
Consensus pattern (55 bp):
TAAAACAACACGGGCGTGCGACACGCCCGTGTGGAAAACCTGTGGGCGAACCTAT
Found at i:83044887 original size:18 final size:18
Alignment explanation
Indices: 83044846--83044880 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83044836 CTTTCCCCCT
*
83044846 TCTTTCATTTGTTTATTG
1 TCTTTCATTTATTTATTG
*
83044864 TCTTTCGTTTATTTATT
1 TCTTTCATTTATTTATT
83044881 TGCTTTCTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.11, G:0.09, T:0.69
Consensus pattern (18 bp):
TCTTTCATTTATTTATTG
Found at i:83049534 original size:29 final size:29
Alignment explanation
Indices: 83049492--83049587 Score: 147
Period size: 29 Copynumber: 3.3 Consensus size: 29
83049482 TGGTCCATCT
83049492 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
*
83049521 CATTCATATAGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
* * *
83049550 TATTCATATGGCCCATTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAATTCA
*
83049579 CATGCATAT
1 CATTCATAT
83049588 TCATGCTCAC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.26
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAATTCA
Found at i:83051697 original size:12 final size:12
Alignment explanation
Indices: 83051680--83051723 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
83051670 AACATTAATC
83051680 CATAATTCATCT
1 CATAATTCATCT
83051692 CATAATTCAT-T
1 CATAATTCATCT
*
83051703 CAGTAATTTCATCA
1 CA-TAA-TTCATCT
83051717 CATAATT
1 CATAATT
83051724 TATTAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
11 3 0.11
12 15 0.54
13 8 0.29
14 2 0.07
ACGTcount: A:0.36, C:0.20, G:0.02, T:0.41
Consensus pattern (12 bp):
CATAATTCATCT
Found at i:83055529 original size:19 final size:20
Alignment explanation
Indices: 83055496--83055533 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
83055486 TGTCAAGCTT
*
83055496 TCGAGTTTTTGATCAAACAC
1 TCGAGTTTTTCATCAAACAC
83055516 TCGA-TTTTTCATCAAACA
1 TCGAGTTTTTCATCAAACA
83055534 AGGTAACGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (20 bp):
TCGAGTTTTTCATCAAACAC
Found at i:83056900 original size:39 final size:39
Alignment explanation
Indices: 83056857--83056955 Score: 144
Period size: 39 Copynumber: 2.5 Consensus size: 39
83056847 AACATGTTTT
* *
83056857 TGAGTATTGCGATATATGCTTGAACGTTATGTGATTATA
1 TGAGTATTGCGATATATGCTTGAACATTATGTAATTATA
*
83056896 TGAGTATTGCGATATGTGCTTGAACATTATGTAATTATA
1 TGAGTATTGCGATATATGCTTGAACATTATGTAATTATA
* * *
83056935 TGTGTAATGTGATATATGCTT
1 TGAGTATTGCGATATATGCTT
83056956 AAAAGTGACT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 53 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.42
Consensus pattern (39 bp):
TGAGTATTGCGATATATGCTTGAACATTATGTAATTATA
Found at i:83061493 original size:43 final size:43
Alignment explanation
Indices: 83061354--83061510 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
83061344 ATATCACACA
* * ** * *
83061354 CAATGCC-ATATCCCAGATATGGTCTTACAGGTTATCACATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACATAATCTCATAT
* ** * * *
83061396 CGATGCCTCTGTCCCAAACAGGGT-TT-TACATGAA--TCATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACACAT-AATCTCATAT
* *
83061436 ACGATGCCAATGTCCCAGATATGGTCTTACACATAATCTCATAT
1 -CAATGCCAATGTCCCAGACATGGTCTTACACATAATCTCATAT
83061480 CAATGCCAATGTCCCAGACATGGTCTTACAC
1 CAATGCCAATGTCCCAGACATGGTCTTACAC
83061511 GAAATCACAC
Statistics
Matches: 89, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
40 5 0.06
41 21 0.24
42 13 0.15
43 44 0.49
44 6 0.07
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (43 bp):
CAATGCCAATGTCCCAGACATGGTCTTACACATAATCTCATAT
Found at i:83061509 original size:84 final size:83
Alignment explanation
Indices: 83061356--83061509 Score: 200
Period size: 84 Copynumber: 1.8 Consensus size: 83
83061346 ATCACACACA
** * * ** *
83061356 ATGCCATATCCCAGATATGGTCTTACAGGTTATCACATATCGATGCCTCTGTCCCAAACAGGGTT
1 ATGCCATATCCCAGATATGGTCTTACACATAATCACATATCAATGCCAATGTCCCAAACAGGGTC
83061421 TTACATGAATCATATACG
66 TTACATGAATCATATACG
* * * *
83061439 ATGCCAATGTCCCAGATATGGTCTTACACATAATCTCATATCAATGCCAATGTCCCAGACATGGT
1 ATGCC-ATATCCCAGATATGGTCTTACACATAATCACATATCAATGCCAATGTCCCAAACAGGGT
83061504 CTTACA
65 CTTACA
83061510 CGAAATCACA
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
83 5 0.08
84 54 0.92
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (83 bp):
ATGCCATATCCCAGATATGGTCTTACACATAATCACATATCAATGCCAATGTCCCAAACAGGGTC
TTACATGAATCATATACG
Found at i:83067013 original size:48 final size:48
Alignment explanation
Indices: 83066927--83067042 Score: 153
Period size: 48 Copynumber: 2.4 Consensus size: 48
83066917 ACCATCCCAG
* *
83066927 ACATGGTCTTACACTAGCTCTCATAACAATGCCAATGCCATGTTCC-AA
1 ACATGGTCTTACACTAGCTCACATAACAAGGCCAATGCCATG-TCCTAA
*** * *
83066975 ACATGGTCTTACACTAGCTCACATATTGAGGCCGATGCCATGTCCTAG
1 ACATGGTCTTACACTAGCTCACATAACAAGGCCAATGCCATGTCCTAA
83067023 ACATGGTCTTACACTAGCTC
1 ACATGGTCTTACACTAGCTC
83067043 TCAAATAACC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
47 3 0.05
48 57 0.95
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (48 bp):
ACATGGTCTTACACTAGCTCACATAACAAGGCCAATGCCATGTCCTAA
Found at i:83069785 original size:55 final size:53
Alignment explanation
Indices: 83069716--83069858 Score: 180
Period size: 55 Copynumber: 2.7 Consensus size: 53
83069706 ATTGACGGTT
* *
83069716 AAAGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAAGGTACCATGTAAGACCATGTCAAGACATGGCATTGATGAGAT-C-ATAAGGC
** * *
83069771 AAAGGTACCATGTAAGACCATACCAAGGCATGGCATTGGTGAGATCATAAGGC
1 AAAGGTACCATGTAAGACCATGTCAAGACATGGCATTGATGAGATCATAAGGC
* *
83069824 -AAGGATACCACGTAAAACCATGTCAAGACATGGCA
1 AAAGG-TACCATGTAAGACCATGTCAAGACATGGCA
83069859 ATGGTAAGTT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
52 4 0.05
53 32 0.42
54 1 0.01
55 39 0.51
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.20
Consensus pattern (53 bp):
AAAGGTACCATGTAAGACCATGTCAAGACATGGCATTGATGAGATCATAAGGC
Found at i:83069844 original size:53 final size:56
Alignment explanation
Indices: 83069719--83069863 Score: 190
Period size: 53 Copynumber: 2.7 Consensus size: 56
83069709 GACGGTTAAA
* *
83069719 GATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGATACTATAAGGCAAAG
** *
83069775 G-TACCATGTAAGACCATACCAAGGCATGGCATTGGTGAGAT-C-ATAAGGC-AAG
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGATACTATAAGGCAAAG
* * *
83069827 GATACCACGTAAAACCATGTCAAGACATGGCAATGGT
1 GATACCATGTAAGACCATGTCAAGACATGGCATTGGT
83069864 AAGTTCAAAA
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
52 4 0.05
53 36 0.47
54 1 0.01
55 35 0.45
56 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (56 bp):
GATACCATGTAAGACCATGTCAAGACATGGCATTGGTGAGATACTATAAGGCAAAG
Found at i:83070985 original size:43 final size:43
Alignment explanation
Indices: 83070937--83071063 Score: 193
Period size: 43 Copynumber: 3.0 Consensus size: 43
83070927 TGTATAGGGA
*
83070937 GAAATCATATAACGATGTCAATGTCCCAGACATGGTCTTACAC
1 GAAATCATATAACGATGCCAATGTCCCAGACATGGTCTTACAC
*
83070980 GAAATCATATAATGATGCCAATGTCCCAGACATGGTCTTACAC
1 GAAATCATATAACGATGCCAATGTCCCAGACATGGTCTTACAC
* * *
83071023 GTAATCACTAT-ACAATGCCAATTTCCCAGACATGGTCTTAC
1 GAAATCA-TATAACGATGCCAATGTCCCAGACATGGTCTTAC
83071064 TTGTAATCTC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
43 74 0.96
44 3 0.04
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
GAAATCATATAACGATGCCAATGTCCCAGACATGGTCTTACAC
Found at i:83076983 original size:19 final size:18
Alignment explanation
Indices: 83076950--83076989 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
83076940 ATACAGAAAT
83076950 ATTTTTCTAATAATAATA
1 ATTTTTCTAATAATAATA
* *
83076968 ATTTTATCTCATAATACTA
1 ATTTT-TCTAATAATAATA
83076987 ATT
1 ATT
83076990 AAAATTTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTTTTCTAATAATAATA
Found at i:83078536 original size:19 final size:19
Alignment explanation
Indices: 83078512--83078554 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
83078502 GGGACCATTT
83078512 GGGCCGAGAATGGGCTTTA
1 GGGCCGAGAATGGGCTTTA
83078531 GGGCCGAGAATGGGCTTTA
1 GGGCCGAGAATGGGCTTTA
83078550 GGGCC
1 GGGCC
83078555 ATTTGTATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.19, C:0.19, G:0.44, T:0.19
Consensus pattern (19 bp):
GGGCCGAGAATGGGCTTTA
Found at i:83078616 original size:26 final size:26
Alignment explanation
Indices: 83078586--83078667 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
83078576 TAGAATACTT
*
83078586 TAGTTTACCAATTACCAAAATACCCC
1 TAGTTTACAAATTACCAAAATACCCC
*
83078612 TAGTTTGCAAAATTACCAAAATACCCC
1 TAGTTTAC-AAATTACCAAAATACCCC
*
83078639 TGGTTTGTA-AAATTACCAAAATACCCC
1 TAG-TT-TACAAATTACCAAAATACCCC
83078666 TA
1 TA
83078668 ATTTTTGAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 7 0.15
27 38 0.79
28 2 0.04
29 1 0.02
ACGTcount: A:0.39, C:0.26, G:0.07, T:0.28
Consensus pattern (26 bp):
TAGTTTACAAATTACCAAAATACCCC
Found at i:83078719 original size:27 final size:27
Alignment explanation
Indices: 83078595--83078736 Score: 142
Period size: 27 Copynumber: 5.3 Consensus size: 27
83078585 TTAGTTTACC
*
83078595 AATTACCAAAATACCCCT-AGTTTGCAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
*
83078622 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
* * *
83078649 AATTACCAAAATACCCCTAATTTTTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* ** * *
83078676 ACTTACTGAAATACCCTTGACTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
* * **
83078703 AATTACCAAAGTACCCTTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
83078730 AATTACC
1 AATTACC
83078737 GTTTTACTCT
Statistics
Matches: 93, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:83079183 original size:27 final size:27
Alignment explanation
Indices: 83078714--83079166 Score: 519
Period size: 27 Copynumber: 16.8 Consensus size: 27
83078704 ATTACCAAAG
* **
83078714 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
*
83078741 TACTCTTGATTTACAGAATTATTGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
* * * *
83078768 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAGAATTATTGTTT
* * ***
83078795 TACCCTCGATTCACAGAATTACCATTT
1 TACCCTTGATTTACAGAATTATTGTTT
*
83078822 TACCCTTGATTTACAGAATCATTGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
* * *
83078849 TACCCTTAAGTTACAGAATTATCGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
* * ***
83078876 TACCCTCGATTCACAGAATTACCATTT
1 TACCCTTGATTTACAGAATTATTGTTT
* * *
83078903 TACCCTTGATTTACAGAATCACTGTCT
1 TACCCTTGATTTACAGAATTATTGTTT
* *
83078930 TACCCTTGAGTTACAGAATTATCGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
* * *
83078957 TACCCTCGGTTTATAGAATTATTGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
* * **
83078984 TACCCTCGATTCACAGAATTACCGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
*
83079011 TACCCTTGATTTACAGAATCATTGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
* *
83079038 TACCCTTGAGTTACAGAATTATCGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
* *
83079065 TACCCTCGATTCACAGAATTATTGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
* *
83079092 TACCCTTGATTTACAGAATCACTGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
*
83079119 TACCCTTGAGTTACAGAATTATTGTTT
1 TACCCTTGATTTACAGAATTATTGTTT
*
83079146 TACCCTCGATTTACAGAATTA
1 TACCCTTGATTTACAGAATTA
83079167 CCATTTTACC
Statistics
Matches: 356, Mismatches: 70, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 356 1.00
ACGTcount: A:0.27, C:0.21, G:0.11, T:0.41
Consensus pattern (27 bp):
TACCCTTGATTTACAGAATTATTGTTT
Found at i:83079218 original size:27 final size:27
Alignment explanation
Indices: 83079195--83079407 Score: 273
Period size: 27 Copynumber: 7.9 Consensus size: 27
83079185 TGAAATTATT
*
83079195 GAAATACCCCTGTAGGGTACAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* **
83079222 GAAATACCCTTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
83079249 GAAATACCCCTGTAGGGTATAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
83079276 AAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
83079303 GAAATACCCCTTTAGGGTAGTATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
83079330 GAAATACCCTTGTAGGGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
83079357 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
83079384 GAGATACCCTTGTAGGGTAAAATT
1 GAAATACCCCTGTAGGGTAGAATT
83079408 TCCATTTTGC
Statistics
Matches: 156, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:83079256 original size:54 final size:54
Alignment explanation
Indices: 83079187--83079407 Score: 325
Period size: 54 Copynumber: 4.1 Consensus size: 54
83079177 CTCGATTGTG
* *
83079187 AAATTATTGAAATACCCCTGTAGGGTACAATTACCGAAATACCCTTGTAGGGTA
1 AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
* * * *
83079241 GAATTATTGAAATACCCCTGTAGGGTATAATTACCAAAATACCCTTGTAGGGTA
1 AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
* * * *
83079295 GAATTACTGAAATACCCCTTTAGGGTAGTATTATCGAAATACCCTTGTAGGGTA
1 AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
* * *
83079349 AAAATACCGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTAGGGTA
1 AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
83079403 AAATT
1 AAATT
83079408 TCCATTTTGC
Statistics
Matches: 150, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 150 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (54 bp):
AAATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTA
Found at i:83079300 original size:81 final size:81
Alignment explanation
Indices: 83079196--83079407 Score: 309
Period size: 81 Copynumber: 2.6 Consensus size: 81
83079186 GAAATTATTG
* *
83079196 AAATACCCCTGTAGGGTACAATTACCGAAATACCCTTGTAGGGTAGAATTATTGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTG
* *
83079261 TAGGGTATAATTACCA
66 TAGGGTAAAAATACCA
* * * *
83079277 AAATACCCTTGTAGGGTAGAATTACTGAAATACCCCTT-TAGGGTAGTATTATCGAAATACCCTT
1 AAATACCCCTGTAGGGTAGAATTACCGAAATA-CCCTTGTAGGGTAGAATTATCGAAATACCCCT
*
83079341 GTAGGGTAAAAATACCG
65 GTAGGGTAAAAATACCA
* *
83079358 AAATACCCCTGTAGGGTAGAATTACCGAGATACCCTTGTAGGGTAAAATT
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATT
83079408 TCCATTTTGC
Statistics
Matches: 115, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
80 5 0.04
81 105 0.91
82 5 0.04
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTATCGAAATACCCCTG
TAGGGTAAAAATACCA
Found at i:83079675 original size:28 final size:28
Alignment explanation
Indices: 83079635--83079716 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
83079625 GGAGGAAGCG
83079635 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
83079663 TTCTGGTGGCTATGCCACAAATATATG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
83079690 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
83079717 ATGTGGTGAC
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
26 7 0.14
27 17 0.34
28 26 0.52
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:83079820 original size:20 final size:20
Alignment explanation
Indices: 83079795--83079835 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
83079785 TGTGTGCCGT
83079795 TATTGTGGGA-TTCGTATCGA
1 TATTGT-GGACTTCGTATCGA
*
83079815 TATTGTGGACTTCGTGTCGA
1 TATTGTGGACTTCGTATCGA
83079835 T
1 T
83079836 TATAGACCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.17, C:0.12, G:0.29, T:0.41
Consensus pattern (20 bp):
TATTGTGGACTTCGTATCGA
Found at i:83079884 original size:22 final size:22
Alignment explanation
Indices: 83079852--83079910 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
83079842 CCCGTTATTG
*
83079852 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
83079874 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
83079896 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
83079911 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:83080120 original size:27 final size:26
Alignment explanation
Indices: 83080062--83080133 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 26
83080052 AAGTGGCTTT
* * *
83080062 GCCACATTATCTGTTTTGGTGGCTCG
1 GCCACAATATCTGTTCTGGTGACTCG
*
83080088 GCCACAATATCTGTATCTGGTGACTCT
1 GCCACAATATCTGT-TCTGGTGACTCG
*
83080115 GTCACAATATCTGTTCTGG
1 GCCACAATATCTGTTCTGG
83080134 CAGCCATGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 18 0.45
27 22 0.55
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GCCACAATATCTGTTCTGGTGACTCG
Found at i:83080260 original size:6 final size:6
Alignment explanation
Indices: 83080251--83080367 Score: 105
Period size: 6 Copynumber: 19.3 Consensus size: 6
83080241 TTGCATTCAT
* *
83080251 ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
83080299 -TTACTG ATACTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTC
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* * *
83080348 ATTTTG GTTCTA ATTCTG AT
1 ATTCTG ATTCTG ATTCTG AT
83080368 AATGTTTCTT
Statistics
Matches: 88, Mismatches: 16, Indels: 14
0.75 0.14 0.12
Matches are distributed among these distances:
5 5 0.06
6 77 0.88
7 5 0.06
8 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:83080285 original size:30 final size:30
Alignment explanation
Indices: 83080251--83080322 Score: 135
Period size: 30 Copynumber: 2.4 Consensus size: 30
83080241 TTGCATTCAT
83080251 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
*
83080281 ATTCTGATTCTGATTCTGTTACTGATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
83080311 ATTCTGATTCTG
1 ATTCTGATTCTG
83080323 TCACCTGATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:83080364 original size:43 final size:43
Alignment explanation
Indices: 83080284--83080365 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
83080274 AATACTGATT
* *
83080284 CTGATTCTGATTCTGTTACTGATACTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTTACTCATACTGATTCTAATTCTGTCAC
** *
83080327 CTGATTCTGATTCTGATT-CTCATTTTGGTTCTAATTCTG
1 CTGATTCTGATTCTG-TTACTCATACTGATTCTAATTCTG
83080366 ATAATGTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
43 31 0.94
44 2 0.06
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.48
Consensus pattern (43 bp):
CTGATTCTGATTCTGTTACTCATACTGATTCTAATTCTGTCAC
Found at i:83080376 original size:18 final size:17
Alignment explanation
Indices: 83080355--83080388 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
83080345 CTCATTTTGG
83080355 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
83080373 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
83080389 GGCTAAGGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:83080415 original size:31 final size:32
Alignment explanation
Indices: 83080380--83080444 Score: 80
Period size: 34 Copynumber: 2.0 Consensus size: 32
83080370 TGTTTCTTAT
*
83080380 TCTG-TAATGGGCTAAGGTCC-ATCTGGTACTG
1 TCTGTTAATGGGCTAAGGCCCGAT-TGGTACTG
83080411 TCTGTTATAATGGGCTAAGGCCCGATTGGTACTG
1 TCTG-T-TAATGGGCTAAGGCCCGATTGGTACTG
83080445 AAACTGTAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 4 0.14
34 23 0.79
35 2 0.07
ACGTcount: A:0.20, C:0.18, G:0.29, T:0.32
Consensus pattern (32 bp):
TCTGTTAATGGGCTAAGGCCCGATTGGTACTG
Found at i:83081443 original size:19 final size:19
Alignment explanation
Indices: 83081411--83081452 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
83081401 AAGTCTATTT
83081411 AAAA-CAAA-TATTTTCCA
1 AAAATCAAATTATTTTCCA
*
83081428 GAAAATCAAATTTTTTTCCA
1 -AAAATCAAATTATTTTCCA
83081448 AAAAT
1 AAAAT
83081453 TTTCGATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 9 0.43
20 8 0.38
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAATCAAATTATTTTCCA
Found at i:83083400 original size:19 final size:18
Alignment explanation
Indices: 83083363--83083406 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
83083353 ATACATACAG
83083363 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
83083380 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
83083399 TACTAATT
1 TAATAATT
83083407 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:83087195 original size:38 final size:38
Alignment explanation
Indices: 83087153--83087271 Score: 141
Period size: 38 Copynumber: 3.1 Consensus size: 38
83087143 TTAAACTCAT
*
83087153 ATATAATACCAACATTAGGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCATTAGGCCTGCGGGATTTAACCCGG
** * *
83087191 ATATAATACCAGCACGAAGCCTGCGGAATTTAACCCGG
1 ATATAATACCAGCATTAGGCCTGCGGGATTTAACCCGG
* *
83087229 ATATAATTCCAGCATATAGG-CTGCGGGTCTTTAAGCCCGG
1 ATATAATACCAGCAT-TAGGCCTGCGGG-ATTTAA-CCCGG
83087269 ATA
1 ATA
83087272 CACATCAAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
38 52 0.78
39 7 0.10
40 8 0.12
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCATTAGGCCTGCGGGATTTAACCCGG
Found at i:83087233 original size:78 final size:78
Alignment explanation
Indices: 83087115--83087271 Score: 171
Period size: 78 Copynumber: 2.0 Consensus size: 78
83087105 AAACCAGAAC
* *
83087115 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCATATATAATACCAACAT-TAGGCCTGCGG
1 ATAACACCAGCACGAAGCCTACGGGAATTTAAAC-C-CATATAATACCAACATATAGG-CTGCGG
83087179 G-ATTTAA-CCCGGAT
63 GTATTTAAGCCCGGAT
* * * *
83087193 ATAATACCAGCACGAAGCCTGC-GGAATTT-AACCCGGATATAATTCCAGCATATAGGCTGCGGG
1 ATAACACCAGCACGAAGCCTACGGGAATTTAAACCC--ATATAATACCAACATATAGGCTGCGGG
*
83087256 TCTTTAAGCCCGGAT
64 TATTTAAGCCCGGAT
83087271 A
1 A
83087272 CACATCAAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
75 1 0.01
76 23 0.34
77 15 0.22
78 28 0.42
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.22
Consensus pattern (78 bp):
ATAACACCAGCACGAAGCCTACGGGAATTTAAACCCATATAATACCAACATATAGGCTGCGGGTA
TTTAAGCCCGGAT
Found at i:83092000 original size:53 final size:54
Alignment explanation
Indices: 83091916--83092121 Score: 168
Period size: 53 Copynumber: 3.8 Consensus size: 54
83091906 TTCCTTTTTA
* * * * * *
83091916 AACTTACCATTTCCGTGTCTTGACATAGTCTTACGTGGTGTCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCCTTGCCTTATAG
* * * * * *
83091969 AACTCACCATTGCCATTCCTTGGCATGGTCTTACATGG-GATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTG-TCCTTGCCTTATAG
** * * * *
83092023 TAGTTTATCAATGCCATGCCTTGACATGGTCTTACATGAT-TCCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGT-CCTTGCCTTATAG
* * *
83092078 AACTTACCAATGCCATGCCTTGGCAT-GTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCCTT
83092122 AAACCCTAAT
Statistics
Matches: 120, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
52 1 0.01
53 55 0.46
54 25 0.21
55 39 0.32
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCCTTGCCTTATAG
Found at i:83093070 original size:111 final size:112
Alignment explanation
Indices: 83092876--83093099 Score: 441
Period size: 111 Copynumber: 2.0 Consensus size: 112
83092866 ACTATGAAGC
83092876 TTGGAAGCTTGACAAAACCTTAGTTATGAAGAACCCTTGAAATTTTGGCCTAATGAAGAAGATGG
1 TTGGAAGCTTGACAAAACCTTAGTTATGAAGAACCCTTGAAATTTTGGCCTAATGAAGAAGATGG
83092941 GCACATTTTTCCATCTTTTTCCC-TTTTTAATCTTTTAATTACCAAA
66 GCACATTTTTCCATCTTTTTCCCTTTTTTAATCTTTTAATTACCAAA
83092987 TTGGAAGCTTGACAAAACCTTAGTTATGAAGAACCCTTGAAATTTTGGCCTAATGAAGAAGATGG
1 TTGGAAGCTTGACAAAACCTTAGTTATGAAGAACCCTTGAAATTTTGGCCTAATGAAGAAGATGG
83093052 GCACATTTTTCCATCTTTTTCCCTTTTTTAATCTTTTAATTACCAAA
66 GCACATTTTTCCATCTTTTTCCCTTTTTTAATCTTTTAATTACCAAA
83093099 T
1 T
83093100 GACTAAAATA
Statistics
Matches: 112, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
111 88 0.79
112 24 0.21
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (112 bp):
TTGGAAGCTTGACAAAACCTTAGTTATGAAGAACCCTTGAAATTTTGGCCTAATGAAGAAGATGG
GCACATTTTTCCATCTTTTTCCCTTTTTTAATCTTTTAATTACCAAA
Found at i:83099527 original size:53 final size:54
Alignment explanation
Indices: 83099458--83099652 Score: 167
Period size: 54 Copynumber: 3.6 Consensus size: 54
83099448 CTTACCATTT
* * * * *
83099458 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GGACTCATCATTG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATG
* * * * * **
83099511 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGACTTATCGTAGTTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG-AACTTATCAATG
* ** * * * * * *
83099566 CCATGTCTTGACACAGTCTTACATGATTTCCTTTCCTTGTAAAACTTACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATG
* *
83099620 CCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 CCATGCCTTGACATGGTCTTACATGGTATCCTT
83099653 AAATCCTAAT
Statistics
Matches: 106, Mismatches: 34, Indels: 3
0.74 0.24 0.02
Matches are distributed among these distances:
53 34 0.32
54 36 0.34
55 36 0.34
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTTATCAATG
Found at i:83100765 original size:22 final size:22
Alignment explanation
Indices: 83100735--83100779 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
83100725 ATTGTATGAT
*
83100735 TTATGAAT-GCATGATAATTGCA
1 TTATGAATGGCATGA-AAATGCA
*
83100757 TTATTAATGGCATGAAAATGCA
1 TTATGAATGGCATGAAAATGCA
83100779 T
1 T
83100780 CTTTGATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.36
Consensus pattern (22 bp):
TTATGAATGGCATGAAAATGCA
Found at i:83118528 original size:25 final size:25
Alignment explanation
Indices: 83118500--83118550 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
83118490 CCTGAGGACC
*
83118500 AATCATATAACTCATGATAATGATT
1 AATCATATAACTCATCATAATGATT
* * *
83118525 AATCATGTAATTCTTCATAATGATT
1 AATCATATAACTCATCATAATGATT
83118550 A
1 A
83118551 TAATAAAGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (25 bp):
AATCATATAACTCATCATAATGATT
Found at i:83118759 original size:41 final size:41
Alignment explanation
Indices: 83118704--83118790 Score: 156
Period size: 41 Copynumber: 2.1 Consensus size: 41
83118694 AGCATTTCAT
* *
83118704 TTTAATAATAAGGCATTTATCGCAATTATATCAATTAAACA
1 TTTATTAATAAGGCATTTATCACAATTATATCAATTAAACA
83118745 TTTATTAATAAGGCATTTATCACAATTATATCAATTAAACA
1 TTTATTAATAAGGCATTTATCACAATTATATCAATTAAACA
83118786 TTTAT
1 TTTAT
83118791 ACATGTACAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.43, C:0.11, G:0.06, T:0.40
Consensus pattern (41 bp):
TTTATTAATAAGGCATTTATCACAATTATATCAATTAAACA
Found at i:83121603 original size:43 final size:41
Alignment explanation
Indices: 83121535--83121615 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 41
83121525 AAAGCACATA
* *
83121535 TATCACATACAATGCCATATCCCAGATATGGTCTTACATGT
1 TATCACATACAATGCCATATCCCAGACAAGGTCTTACATGT
* *
83121576 TATCACATATCTATGCCTCTATCCCAGACAAGGTCTTACA
1 TATCACATA-CAATGCC-ATATCCCAGACAAGGTCTTACA
83121616 AGTAATATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 9 0.26
42 6 0.18
43 19 0.56
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (41 bp):
TATCACATACAATGCCATATCCCAGACAAGGTCTTACATGT
Found at i:83121841 original size:21 final size:23
Alignment explanation
Indices: 83121808--83121850 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
83121798 ACATATATAA
83121808 ATATACAATTT-AATTCAAAAAT
1 ATATACAATTTAAATTCAAAAAT
*
83121830 ATATAC-ATTTAAATTTAAAAA
1 ATATACAATTTAAATTCAAAAA
83121851 CATTTATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (23 bp):
ATATACAATTTAAATTCAAAAAT
Found at i:83132959 original size:30 final size:27
Alignment explanation
Indices: 83132895--83132959 Score: 69
Period size: 30 Copynumber: 2.3 Consensus size: 27
83132885 TTTTGAGTAA
*
83132895 TTATGG-CTAAATTGTAAATAATAAAT
1 TTATGGACTAAAATGTAAATAATAAAT
* *
83132921 TGAGGGACTAAAATGTGAAATAAATGAAAT
1 TTATGGACTAAAATGT-AAAT-AAT-AAAT
83132951 TTATGGACT
1 TTATGGACT
83132960 TGTATGAACA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
26 4 0.13
27 8 0.27
28 4 0.13
29 3 0.10
30 11 0.37
ACGTcount: A:0.45, C:0.05, G:0.18, T:0.32
Consensus pattern (27 bp):
TTATGGACTAAAATGTAAATAATAAAT
Found at i:83133565 original size:41 final size:43
Alignment explanation
Indices: 83133460--83133621 Score: 143
Period size: 43 Copynumber: 3.8 Consensus size: 43
83133450 CGATGTGTTC
*
83133460 TCGTGTAAGACCATGTCTGGGACGTTGGCATCGGTATGTGATGA
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGGTATGTGAT-A
* *
83133504 T-GTGTAAGACCATGTCTGGGACATTGGCAT-TGTATTTGAT-
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGGTATGTGATA
* * * * * * * *
83133544 TCGTGTAAGACCCTGTTTGGGAGAGTGCCATCGATTTGTGATG
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGGTATGTGATA
* * * **
83133587 GCATGTAAGACCACGTCTGGGATGTTGGCAT-GGTA
1 TCGTGTAAGACCATGTCTGGGACATTGGCATCGGTA
83133622 CGATATGTGT
Statistics
Matches: 92, Mismatches: 23, Indels: 8
0.75 0.19 0.07
Matches are distributed among these distances:
40 1 0.01
41 24 0.26
42 16 0.17
43 50 0.54
44 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.32, T:0.31
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACATTGGCATCGGTATGTGATA
Found at i:83136475 original size:42 final size:42
Alignment explanation
Indices: 83136365--83136477 Score: 144
Period size: 40 Copynumber: 2.7 Consensus size: 42
83136355 TTGACGACAA
* * *
83136365 TTCGGCTATGTATGGCACTTAGTGTGC--GATTCGAGATAGC
1 TTCGACTATGTATGGCACTTAGTGTGCGAGATTCAAAATAGC
*
83136405 TTC-AGCTATGTATGGCATTTAGTGTGCGAGATT-AAAATAGC
1 TTCGA-CTATGTATGGCACTTAGTGTGCGAGATTCAAAATAGC
83136446 TTCGACTATGTATTGGCACTTAGTGTGCGAGA
1 TTCGACTATGTA-TGGCACTTAGTGTGCGAGA
83136478 ATTCGAGTAT
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
40 24 0.38
41 16 0.25
42 23 0.37
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (42 bp):
TTCGACTATGTATGGCACTTAGTGTGCGAGATTCAAAATAGC
Found at i:83137389 original size:44 final size:44
Alignment explanation
Indices: 83137339--83137427 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
83137329 CATCTCATAA
*
83137339 AATACGGCTCATATGGTCGTTTCGTTTCTTTCATATGAAAATAG
1 AATACGGCTCATATGGTCGTTTCATTTCTTTCATATGAAAATAG
83137383 AATACGGCTCATATGGTCGTTTCATTTCTTTCATATGAAAATAG
1 AATACGGCTCATATGGTCGTTTCATTTCTTTCATATGAAAATAG
83137427 A
1 A
83137428 CTCATCAAGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (44 bp):
AATACGGCTCATATGGTCGTTTCATTTCTTTCATATGAAAATAG
Found at i:83138336 original size:40 final size:40
Alignment explanation
Indices: 83138262--83138483 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
83138252 AACCCAAGTA
* *
83138262 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
83138301 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
83138341 CCTTCGGGACTTAGCCTGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
83138381 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
83138421 CCTTCGGGACTTAGCCTGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
83138461 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
83138484 CATTCGAATA
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 12 0.07
40 152 0.91
41 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:83145560 original size:40 final size:40
Alignment explanation
Indices: 83145486--83145707 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
83145476 AACCCAAGTA
* * * *
83145486 CCTTCGGGATTTAG-CTGGATATAG-CAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCA-ATAGCACAAATG
* *
83145525 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
83145565 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
83145605 CCTTCGAGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
83145645 CCTTCGGGACTTAGCCCAGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
83145685 CCTTCGGAACTTAGCCCGAATAT
1 CCTTCGGGACTTAGCCCGGATAT
83145708 CATTCGAATA
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 12 0.07
40 149 0.91
41 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:83149909 original size:68 final size:65
Alignment explanation
Indices: 83149703--83149924 Score: 218
Period size: 67 Copynumber: 3.4 Consensus size: 65
83149693 CATAATTTTG
* * *
83149703 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGTGACCTAGCCA-CTTTA-TCTCGTA
1 GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
** * * * * * * * * *
83149766 GCTCTCTTGTTTACATGGTGTCCTTCACCTGGAACCACACATGCAACCTAGATACATCTA-TCTC
1 GCTCTCTTGTACACATGGTG---TACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTC
83149830 GTA
63 GTA
83149833 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATAATGTCT
1 GCTCTCTTGTAC-ACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTC-T-AT-TCT
83149897 CGTA
62 CGTA
*
83149901 GCTCTCTTGTACACATGGTATACA
1 GCTCTCTTGTACACATGGTGTACA
83149925 TCCCGTATTA
Statistics
Matches: 124, Mismatches: 25, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
63 18 0.15
64 26 0.21
65 1 0.01
66 22 0.18
67 28 0.23
68 28 0.23
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (65 bp):
GCTCTCTTGTACACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCTATTCTCGTA
Found at i:83149946 original size:68 final size:68
Alignment explanation
Indices: 83149826--83149952 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
83149816 GATACATCTA
* * *
83149826 TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACCTCATA
1 TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCATA
83149891 ATG
66 ATG
* * *
83149894 TCTCGTAGCTCTCTTGTAC-ACATGGTATACATC-CCGTATTACACATGTGACCTAGCTAC
1 TCTCGTAGCTCTCTTGT-CTACATGGTATACA-CACAGTATCACACATGCGACCTAGCTAC
83149953 ATACCATCTG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
68 49 0.96
69 2 0.04
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTATACACACAGTATCACACATGCGACCTAGCTACCTCATA
ATG
Found at i:83153229 original size:17 final size:17
Alignment explanation
Indices: 83153207--83153239 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
83153197 TTTTGTAATA
*
83153207 GTATATAATGGGAAATG
1 GTATATAATGCGAAATG
83153224 GTATATAATGCGAAAT
1 GTATATAATGCGAAAT
83153240 TCAATCATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.03, G:0.24, T:0.30
Consensus pattern (17 bp):
GTATATAATGCGAAATG
Found at i:83162160 original size:48 final size:48
Alignment explanation
Indices: 83162084--83162271 Score: 270
Period size: 48 Copynumber: 3.9 Consensus size: 48
83162074 TAGGGTTATG
83162084 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* * * * *
83162132 CGTAATCCCA-GATAAGACGATGTTTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATG-TAAGACCATGTCTGGGACATGGCATTGGCATCAATA
*
83162180 TGTGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCAATA
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
* * * *
83162228 TGTGATCCCATGTAAGACCATATCTAGAATATGGCATTGGCATC
1 TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
83162272 TTATTATGCA
Statistics
Matches: 124, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 1 0.01
48 122 0.98
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATA
Found at i:83166342 original size:6 final size:6
Alignment explanation
Indices: 83166312--83166503 Score: 108
Period size: 6 Copynumber: 31.2 Consensus size: 6
83166302 AAGAAACATT
* *
83166312 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * * * *
83166359 GTGACAGA ATCAAA ATCAAA ATCAGA ATCAGA ATTAGGTA A-CAAA ATCAGA
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
* * * * *
83166410 ATCAGT GTCAGGTA A-CAAA ATCAGA ATCAGA ACCAGA ATCAGA ATTAGGTA
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
* * *
83166461 A-CAGA ATCAGA ATTAGT ATCAGGTA A-CAGA ATTAGA ATCAGA A
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA A
83166504 AGTGAATGCA
Statistics
Matches: 141, Mismatches: 28, Indels: 34
0.69 0.14 0.17
Matches are distributed among these distances:
5 10 0.07
6 111 0.79
7 14 0.10
8 6 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:83166376 original size:31 final size:31
Alignment explanation
Indices: 83166333--83166503 Score: 111
Period size: 31 Copynumber: 5.5 Consensus size: 31
83166323 AATCAAAATG
* *
83166333 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
83166364 AGAATCAAAATCAAAATCAGAATCA-G-AATT
1 AGAATCAAAATCAGAATCAGAATCAGGTAA-C
**
83166394 AGGTAA-CAAAATCAGAATCAGTGTCAGGTAAC
1 A-G-AATCAAAATCAGAATCAGAATCAGGTAAC
* * * *
83166426 AAAATCAGAATCAGAACCAGAATCA-G-AATT
1 AGAATCAAAATCAGAATCAGAATCAGGTAA-C
* * *
83166456 AGGTAA-CAGAATCAGAATTAGTATCAGGTAAC
1 A-G-AATCAAAATCAGAATCAGAATCAGGTAAC
* *
83166488 AGAATTAGAATCAGAA
1 AGAATCAAAATCAGAA
83166504 AGTGAATGCA
Statistics
Matches: 108, Mismatches: 20, Indels: 24
0.71 0.13 0.16
Matches are distributed among these distances:
29 3 0.03
30 8 0.07
31 85 0.79
32 8 0.07
33 4 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:83166382 original size:37 final size:37
Alignment explanation
Indices: 83166326--83166413 Score: 113
Period size: 37 Copynumber: 2.4 Consensus size: 37
83166316 GAACTAGAAT
* * * *
83166326 CAAAATGAGAATCAGAATCAGAATCAGAATCAGGTGA
1 CAAAATCAAAATCAAAATCAGAATCAGAATCAGGTAA
* *
83166363 CAGAATCAAAATCAAAATCAGAATCAGAATTAGGTAA
1 CAAAATCAAAATCAAAATCAGAATCAGAATCAGGTAA
*
83166400 CAAAATCAGAATCA
1 CAAAATCAAAATCA
83166414 GTGTCAGGTA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.52, C:0.15, G:0.16, T:0.17
Consensus pattern (37 bp):
CAAAATCAAAATCAAAATCAGAATCAGAATCAGGTAA
Found at i:83166403 original size:25 final size:25
Alignment explanation
Indices: 83166375--83166441 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
83166365 GAATCAAAAT
*
83166375 CAAAATCAGAATCAGAATTAGGTAA
1 CAAAATCAGAATCAGAATCAGGTAA
**
83166400 CAAAATCAGAATCAGTGTCAGGTAA
1 CAAAATCAGAATCAGAATCAGGTAA
83166425 CAAAATCAGAATCAGAA
1 CAAAATCAGAATCAGAA
83166442 CCAGAATCAG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.18
Consensus pattern (25 bp):
CAAAATCAGAATCAGAATCAGGTAA
Found at i:83166432 original size:62 final size:62
Alignment explanation
Indices: 83166341--83166488 Score: 215
Period size: 62 Copynumber: 2.4 Consensus size: 62
83166331 TGAGAATCAG
* * * *
83166341 AATCAGAATCAGAATCAGGTGACAGAATCAAAATCAAAATCAGAATCAGAATTAGGTAACAA
1 AATCAGAATCAGTATCAGGTAACAAAATCAAAATCAAAACCAGAATCAGAATTAGGTAACAA
* * * *
83166403 AATCAGAATCAGTGTCAGGTAACAAAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAG
1 AATCAGAATCAGTATCAGGTAACAAAATCAAAATCAAAACCAGAATCAGAATTAGGTAACAA
*
83166465 AATCAGAATTAGTATCAGGTAACA
1 AATCAGAATCAGTATCAGGTAACA
83166489 GAATTAGAAT
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 76 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (62 bp):
AATCAGAATCAGTATCAGGTAACAAAATCAAAATCAAAACCAGAATCAGAATTAGGTAACAA
Found at i:83166471 original size:25 final size:25
Alignment explanation
Indices: 83166437--83166503 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
83166427 AAATCAGAAT
* *
83166437 CAGAACCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
83166462 CAGAATCAGAATTAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
83166487 CAGAATTAGAATCAGAA
1 CAGAATCAGAATCAGAA
83166504 AGTGAATGCA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:83167048 original size:27 final size:27
Alignment explanation
Indices: 83167010--83167259 Score: 313
Period size: 27 Copynumber: 9.3 Consensus size: 27
83167000 CACGTAAAAT
* * * *
83167010 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
83167037 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83167064 AGTAATTCTACCCTACAAGGGTATTT-
1 GGTAATTCTACCCTACAGGGGTATTTC
*
83167090 GAGTAATTCTACCCTACAGGGGTATTTT
1 G-GTAATTCTACCCTACAGGGGTATTTC
* * *
83167118 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
83167145 GGTAATTCTATCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83167172 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83167199 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
83167226 GATAATTCTTCCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
83167253 GGTAATT
1 GGTAATT
83167260 TTATAAATCG
Statistics
Matches: 189, Mismatches: 32, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
27 189 1.00
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:83167274 original size:27 final size:27
Alignment explanation
Indices: 83167244--83167395 Score: 105
Period size: 27 Copynumber: 5.6 Consensus size: 27
83167234 TTCCCTACAG
*
83167244 GGGTATTTCGGTAATTTTATAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*** * * *
83167271 GGGTAAAACGATAATTCTGTA-AATTAG-
1 GGGTATTTCGGTAATT-T-TACAAATCGA
*
83167298 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGGTAATTTTACAAATCGA
** **
83167325 GGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
83167352 GGGTATTTCAGTAATTTTACAAA-CCA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
83167378 GGGGTATTTTGGTAATTT
1 -GGGTATTTCGGTAATTT
83167396 GGTAAACTAA
Statistics
Matches: 97, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
25 2 0.02
26 10 0.10
27 78 0.80
28 5 0.05
29 2 0.02
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:83167274 original size:54 final size:54
Alignment explanation
Indices: 83167216--83167340 Score: 128
Period size: 54 Copynumber: 2.3 Consensus size: 54
83167206 CTACCCTACA
*** *
83167216 AGGGTATTTCGATAATTCT-TCCCTACAGGGGTA-TTTCGGTAATTTTATAAATCG
1 AGGGTATTTCGATAATTCTGTAAAT-CAGGGGTACTTT-GGTAATTTTACAAATCG
*** * *
83167270 AGGGTAAAACGATAATTCTGTAAATTAGGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGTATTTCGATAATTCTGTAAATCAGGGGTACTTTGGTAATTTTACAAATCG
*
83167324 AGGGTATTTCAATAATT
1 AGGGTATTTCGATAATT
83167341 TTACAGGTCG
Statistics
Matches: 56, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
54 51 0.91
55 5 0.09
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (54 bp):
AGGGTATTTCGATAATTCTGTAAATCAGGGGTACTTTGGTAATTTTACAAATCG
Found at i:83169379 original size:6 final size:6
Alignment explanation
Indices: 83169368--83169539 Score: 75
Period size: 6 Copynumber: 27.8 Consensus size: 6
83169358 AATCAAATTG
* * * * * *
83169368 AGAATC AGAATC AGAATC AAAAAC AG-GTGAC AAAATC AAAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* ** *
83169417 AGAATC AGAATT AGGTAA-C AGAATC AGAATC AGTGTC AGGCAA-C AAAATC
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * * * *
83169467 AGAATC AGAACC AGAATC AGAATT AGGTAA-C AAAATC CGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
*
83169516 AGGTAA-C AGAATT AGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
83169540 GTGAATGCAA
Statistics
Matches: 123, Mismatches: 28, Indels: 30
0.68 0.15 0.17
Matches are distributed among these distances:
5 8 0.07
6 97 0.79
7 12 0.10
8 6 0.05
ACGTcount: A:0.50, C:0.16, G:0.17, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:83169442 original size:37 final size:37
Alignment explanation
Indices: 83169370--83169448 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
83169360 TCAAATTGAG
* *
83169370 AATCAGAATCAGAATCAAAAACAGGTGACAAAATCAA
1 AATCAAAATCAGAATCAAAAACAGGTAACAAAATCAA
* ** * *
83169407 AATCAAAATCAGAATCAGAATTAGGTAACAGAATCAG
1 AATCAAAATCAGAATCAAAAACAGGTAACAAAATCAA
83169444 AATCA
1 AATCA
83169449 GTGTCAGGCA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.54, C:0.15, G:0.14, T:0.16
Consensus pattern (37 bp):
AATCAAAATCAGAATCAAAAACAGGTAACAAAATCAA
Found at i:83169447 original size:25 final size:25
Alignment explanation
Indices: 83169410--83169476 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
83169400 AAATCAAAAT
* *
83169410 CAAAATCAGAATCAGAATTAGGTAA
1 CAAAATCAGAATCAGAATCAGGCAA
* **
83169435 CAGAATCAGAATCAGTGTCAGGCAA
1 CAAAATCAGAATCAGAATCAGGCAA
83169460 CAAAATCAGAATCAGAA
1 CAAAATCAGAATCAGAA
83169477 CCAGAATCAG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.16
Consensus pattern (25 bp):
CAAAATCAGAATCAGAATCAGGCAA
Found at i:83169448 original size:62 final size:62
Alignment explanation
Indices: 83169347--83169510 Score: 181
Period size: 62 Copynumber: 2.7 Consensus size: 62
83169337 AAGAAACATT
* **
83169347 ATCAAAACTAGAATCA-AATT-GAG-AATCAGAATCAGAATCAAAAACAGGTGACAAAATCAAA
1 ATCAAAACCAGAATCAGAATTAG-GTAA-CAGAATCAGAATCAAAAACAGGCAACAAAATCAAA
* **** *
83169408 ATCAAAATCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTGTCAGGCAACAAAATCAGA
1 ATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAAAAACAGGCAACAAAATCAAA
* * *
83169470 ATCAGAACCAGAATCAGAATTAGGTAACAAAATCCGAATCA
1 ATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCA
83169511 GTATCAGGTA
Statistics
Matches: 87, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
61 14 0.16
62 70 0.80
63 3 0.03
ACGTcount: A:0.51, C:0.16, G:0.15, T:0.17
Consensus pattern (62 bp):
ATCAAAACCAGAATCAGAATTAGGTAACAGAATCAGAATCAAAAACAGGCAACAAAATCAAA
Found at i:83169476 original size:37 final size:37
Alignment explanation
Indices: 83169435--83169517 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
83169425 AATTAGGTAA
**
83169435 CAGAATCAGAATCAGTGTCAGGCAACAAAATCAGAAT
1 CAGAATCAGAATCAGAATCAGGCAACAAAATCAGAAT
* * * *
83169472 CAGAACCAGAATCAGAATTAGGTAACAAAATCCGAAT
1 CAGAATCAGAATCAGAATCAGGCAACAAAATCAGAAT
*
83169509 CAGTATCAG
1 CAGAATCAG
83169518 GTAACAGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.46, C:0.19, G:0.18, T:0.17
Consensus pattern (37 bp):
CAGAATCAGAATCAGAATCAGGCAACAAAATCAGAAT
Found at i:83169511 original size:62 final size:62
Alignment explanation
Indices: 83169397--83169538 Score: 203
Period size: 62 Copynumber: 2.3 Consensus size: 62
83169387 AAAACAGGTG
* * * * *
83169397 ACAAAATCAAAATCAAAATCAGAATCAGAATTAGGTAACAGAATCAGAATCAGTGTCAGGCA
1 ACAAAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAAAATCAGAATCAGTATCAGGCA
* *
83169459 ACAAAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAAAATCCGAATCAGTATCAGGTA
1 ACAAAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAAAATCAGAATCAGTATCAGGCA
* *
83169521 ACAGAATTAGAATCAGAA
1 ACAAAATCAGAATCAGAA
83169539 TGTGAATGCA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 71 1.00
ACGTcount: A:0.50, C:0.16, G:0.16, T:0.18
Consensus pattern (62 bp):
ACAAAATCAGAATCAGAACCAGAATCAGAATTAGGTAACAAAATCAGAATCAGTATCAGGCA
Found at i:83169533 original size:25 final size:25
Alignment explanation
Indices: 83169478--83169539 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
83169468 GAATCAGAAC
*
83169478 CAGAATCAGAATTAGGTAACAAAAT
1 CAGAATCAGAATCAGGTAACAAAAT
* * *
83169503 CCGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGGTAACAAAAT
*
83169528 TAGAATCAGAAT
1 CAGAATCAGAAT
83169540 GTGAATGCAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.21
Consensus pattern (25 bp):
CAGAATCAGAATCAGGTAACAAAAT
Found at i:83170015 original size:27 final size:27
Alignment explanation
Indices: 83169977--83170226 Score: 324
Period size: 27 Copynumber: 9.3 Consensus size: 27
83169967 CACGTAAAAT
* * *
83169977 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83170004 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83170031 AGTAATTCTACCCTACAAGTGTATTT-
1 GGTAATTCTACCCTACAAGGGTATTTC
*
83170057 GAGTAATTCTACCCTACAGGGGTATTTC
1 G-GTAATTCTACCCTACAAGGGTATTTC
* *
83170085 AGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
83170112 GGTAATTCTACCTTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
83170139 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
83170166 GGT-ATATCTACCCTACAAGGGTATTTC
1 GGTAAT-TCTACCCTACAAGGGTATTTC
* *
83170193 GGTAATTCTTCCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
83170220 GATAATT
1 GGTAATT
83170227 TTGTAAATCG
Statistics
Matches: 193, Mismatches: 26, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 189 0.98
28 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:83170241 original size:27 final size:27
Alignment explanation
Indices: 83170211--83170341 Score: 79
Period size: 27 Copynumber: 4.9 Consensus size: 27
83170201 TTCCCTACAG
**
83170211 GGGTATTTCGATAATTTTGTAAATCGA
1 GGGTATTTCGATAATTTTACAAATCGA
*** * ** *
83170238 GGGTAAAACGGTAATTTTGTAAAT-TA
1 GGGTATTTCGATAATTTTACAAATCGA
* *
83170264 GGGGTACTTT-GGTAATTTTACAAGTCGA
1 -GGGTA-TTTCGATAATTTTACAAATCGA
* **
83170292 GGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTTCGATAATTTTACAAATCGA
*
83170319 GGGTATTTC-AGCAATTTTACAAA
1 GGGTATTTCGA-TAATTTTACAAA
83170342 CCAGGGGTAT
Statistics
Matches: 81, Mismatches: 18, Indels: 10
0.74 0.17 0.09
Matches are distributed among these distances:
26 5 0.06
27 75 0.93
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCGA
Found at i:83176152 original size:38 final size:37
Alignment explanation
Indices: 83176065--83176220 Score: 161
Period size: 38 Copynumber: 4.1 Consensus size: 37
83176055 TCCAGTCACT
* *
83176065 AGCACAAACCTACGGGACTTTAAGCTCAGATATAATACC
1 AGCACAAGCCTACGGGA-TTTAA-CCCAGATATAATACC
* *
83176104 AGCACTAGCCTACGGGATTTAACCCGGATATAATACC
1 AGCACAAGCCTACGGGATTTAACCCAGATATAATACC
* * * *
83176141 AGCACGAAGCCTGCGCGATTTAATCCAGATATATTACC
1 AGCAC-AAGCCTACGGGATTTAACCCAGATATAATACC
* * *
83176179 AGCACGAAGCCTGCAGGATTTAACCC-GAATATAATTCC
1 AGCAC-AAGCCTACGGGATTTAACCCAG-ATATAATACC
83176217 AGCA
1 AGCA
83176221 TATAGCCTGC
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
37 19 0.19
38 66 0.66
39 15 0.15
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (37 bp):
AGCACAAGCCTACGGGATTTAACCCAGATATAATACC
Found at i:83184358 original size:38 final size:38
Alignment explanation
Indices: 83184191--83184350 Score: 196
Period size: 38 Copynumber: 4.2 Consensus size: 38
83184181 GAATCCAGTC
* *
83184191 ACCAGCAC-AAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCAGATATAAT
* * * *
83184230 ACCAGCACTAGGCCTGCGGAATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
* * **
83184268 ACCAGCACGAAGCCTGCGGGATTTAACTCGGATATGTT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
83184306 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
*
83184344 TCCAGCA
1 ACCAGCA
83184351 TATAGCCTCG
Statistics
Matches: 104, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
38 82 0.79
39 13 0.12
40 9 0.09
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAAT
Found at i:83184358 original size:76 final size:78
Alignment explanation
Indices: 83184191--83184371 Score: 219
Period size: 76 Copynumber: 2.4 Consensus size: 78
83184181 GAATCCAGTC
* * *
83184191 ACCAGCAC-AAACCTGCGGGACTTTAAGCTCAGATATAATACCAGCACTAGGCCTGCGGAATTTA
1 ACCAGCACGAAGCCTGCGGGACTTTAAGCTCAGATATAATACCAGCACGAAGCCTGCGGAATTTA
*
83184255 ACCCGGATATAAT
66 ACCCAGATATAAT
* ** *
83184268 ACCAGCACGAAGCCTGCGGGA-TTTAA-CTCGGATATGTTACCAGCACGAAGCCTGCGGGATTTA
1 ACCAGCACGAAGCCTGCGGGACTTTAAGCTCAGATATAATACCAGCACGAAGCCTGCGGAATTTA
83184331 ACCCAGATATAAT
66 ACCCAGATATAAT
* * *
83184344 TCCAGCA-TATAGCCT-CGGGTCTTTAAGC
1 ACCAGCACGA-AGCCTGCGGGACTTTAAGC
83184372 CTGGATACAC
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
75 5 0.06
76 59 0.66
77 14 0.16
78 11 0.12
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (78 bp):
ACCAGCACGAAGCCTGCGGGACTTTAAGCTCAGATATAATACCAGCACGAAGCCTGCGGAATTTA
ACCCAGATATAAT
Done.