Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 245 of 345
Found at i:83187277 original size:69 final size:69
Alignment explanation
Indices: 83187162--83187653 Score: 371
Period size: 69 Copynumber: 7.1 Consensus size: 69
83187152 AAATTGTCAA
* * * ** *
83187162 CTGTAAAATTAAGGTTCGCAGGTGAAGAGCTACCACCTCCAGCACAGTTAATGAGAGCAAAGTTC
1 CTGTAAAATTAAGGTTCGCAGGTGAAAAGCCACGACCTCCAGCACAGTTAACAAGAGCAAAGGTC
*
83187227 TTAG
66 CTAG
* * * * *
83187231 CTGTAAAAGTAAGGTTCGCAAGTGAAAAGCCATGACCTCCAACACAGTTAGCAAGAGCAAAGGTC
1 CTGTAAAATTAAGGTTCGCAGGTGAAAAGCCACGACCTCCAGCACAGTTAACAAGAGCAAAGGTC
83187296 CTAG
66 CTAG
* * * * * *
83187300 CTATAAAATTAAGGTTCGCAGGT-AAAGAGCCGCGACCTCTAGCACAATTAGCAAGATCAAAGGT
1 CTGTAAAATTAAGGTTCGCAGGTGAAA-AGCCACGACCTCCAGCACAGTTAACAAGAGCAAAGGT
*
83187364 CTTAG
65 CCTAG
* * ** * * *
83187369 CTGTAAAATTAAGGTTCGCAGGCGAAGAGCTGCAACCTCTAGCACAGTTAACGAA-AGCAAAGAT
1 CTGTAAAATTAAGGTTCGCAGGTGAAAAGCCACGACCTCCAGCACAGTTAAC-AAGAGCAAAGGT
*
83187433 CCCAG
65 CCTAG
* * * * * ** * *
83187438 CTGTAAAATTAAGGTTCACAGG-CAAAGAGTCGCGACCTCCAGCACAATTAGTAAGAGAAAAGCT
1 CTGTAAAATTAAGGTTCGCAGGTGAAA-AGCCACGACCTCCAGCACAGTTAACAAGAGCAAAGGT
* *
83187502 CCCAA
65 CCTAG
* * * * * * * * * *
83187507 CTATAAAACTAAGGTTTGCATGAGAAGAGCCACAACCTCCAGCACAATTAGCAAGAGCAGAA-CT
1 CTGTAAAATTAAGGTTCGCAGGTGAAAAGCCACGACCTCCAGCACAGTTAACAAGAGCA-AAGGT
* *
83187571 CCCAT
65 CCTAG
* * * * * * * * *
83187576 CTGTAAAATTAAAAGTTCACAGGCGAAAAGCAACAACCTCTAGCACAGTTAGCGAGAGCAAAGCT
1 CTGTAAAATT-AAGGTTCGCAGGTGAAAAGCCACGACCTCCAGCACAGTTAACAAGAGCAAAGGT
*
83187641 CCCAG
65 CCTAG
83187646 CTGTAAAA
1 CTGTAAAA
83187654 CAAATGTTCA
Statistics
Matches: 342, Mismatches: 72, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
68 7 0.02
69 274 0.80
70 61 0.18
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.19
Consensus pattern (69 bp):
CTGTAAAATTAAGGTTCGCAGGTGAAAAGCCACGACCTCCAGCACAGTTAACAAGAGCAAAGGTC
CTAG
Found at i:83187415 original size:138 final size:136
Alignment explanation
Indices: 83187165--83187654 Score: 419
Period size: 138 Copynumber: 3.6 Consensus size: 136
83187155 TTGTCAACTG
* ** * * * * *
83187165 TAAAATTAAGGTTCGCAGGTGAAGAGCTACCACCTCCAGCACAGTTAATGAGAGCAAAGTTCTTA
1 TAAAATTAAGGTTCGCAGGTAAAGAGCCGCGACCTCCAGCACAATTAGTAAGAGCAAAGCTCTTA
* * * * *
83187230 GCTGTAAAAGTAAGGTTCGCAAGTGAAAAGCCATGACCTCCAACACAGTTAGCAAGAGCAAAGGT
66 GCTGTAAAACTAAGGTTCGCAAGAGAAGAGCCA--ACCTCCAGCACAGTTAGCAAGAGCAAAGAT
*
83187295 CCTAGCTA
129 CCCAGCTA
* * * *
83187303 TAAAATTAAGGTTCGCAGGTAAAGAGCCGCGACCTCTAGCACAATTAGCAAGATCAAAGGTCTTA
1 TAAAATTAAGGTTCGCAGGTAAAGAGCCGCGACCTCCAGCACAATTAGTAAGAGCAAAGCTCTTA
* * * * *
83187368 GCTGTAAAATTAAGGTTCGCAGGCGAAGAGCTGCAACCTCTAGCACAGTTAACGAA-AGCAAAGA
66 GCTGTAAAACTAAGGTTCGCAAGAGAAGAGC--CAACCTCCAGCACAGTTAGC-AAGAGCAAAGA
*
83187432 TCCCAGCTG
128 TCCCAGCTA
* * * * **
83187441 TAAAATTAAGGTTCACAGGCAAAGAGTCGCGACCTCCAGCACAATTAGTAAGAGAAAAGCTCCCA
1 TAAAATTAAGGTTCGCAGGTAAAGAGCCGCGACCTCCAGCACAATTAGTAAGAGCAAAGCTCTTA
* * * * * *
83187506 ACTATAAAACTAAGGTTTGCATGAGAAGAGCCACAACCTCCAGCACAATTAGCAAGAGCAGAA-C
66 GCTGTAAAACTAAGGTTCGCAAGAGAAGAG-C-CAACCTCCAGCACAGTTAGCAAGAGCA-AAGA
* *
83187570 TCCCATCTG
128 TCCCAGCTA
* * * ** * * * ** *
83187579 TAAAATTAAAAGTTCACAGGCGAAA-AGCAACAACCTCTAGCACAGTTAGCGAGAGCAAAGCTCC
1 TAAAATT-AAGGTTCGCAGG-TAAAGAGCCGCGACCTCCAGCACAATTAGTAAGAGCAAAGCTCT
*
83187643 CAGCTGTAAAAC
64 TAGCTGTAAAAC
83187655 AAATGTTCAC
Statistics
Matches: 288, Mismatches: 56, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
137 2 0.01
138 225 0.78
139 56 0.19
140 5 0.02
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.19
Consensus pattern (136 bp):
TAAAATTAAGGTTCGCAGGTAAAGAGCCGCGACCTCCAGCACAATTAGTAAGAGCAAAGCTCTTA
GCTGTAAAACTAAGGTTCGCAAGAGAAGAGCCAACCTCCAGCACAGTTAGCAAGAGCAAAGATCC
CAGCTA
Found at i:83187522 original size:207 final size:207
Alignment explanation
Indices: 83187162--83187653 Score: 569
Period size: 207 Copynumber: 2.4 Consensus size: 207
83187152 AAATTGTCAA
* * * * *
83187162 CTGTAAAATTAAGGTTCGCAGGTGAAGAGCTACCACCTCCAGCACAGTTAATGAGAGCAAAGTTC
1 CTGTAAAATTAAGGTTCGCAGGCGAAGAGCTACAACCTCTAGCACAGTTAACGAGAGCAAAGATC
** * * * *
83187227 TTAGCTGTAAAAGTAAGGTTCGCAAGTGAAAAGCCATGACCTCCAACACAGTTAGCAAGAGCAAA
66 CCAGCTGTAAAAGTAAGGTTCACAAGTGAAAAGCCACGACCTCCAACACAATTAGCAAGAGAAAA
* * * * * * *
83187292 GGTCCTAGCTATAAAATTAAGGTTCGCAGGTA-AAGAGCCGCGACCTCTAGCACAATTAGCAAGA
131 GCTCCCAACTATAAAACTAAGGTTCGCAGG-AGAAGAGCCACAACCTCCAGCACAATTAGCAAGA
* * **
83187356 TCA-AAGGTCTTAG
195 GCAGAA-CTCCCAG
* *
83187369 CTGTAAAATTAAGGTTCGCAGGCGAAGAGCTGCAACCTCTAGCACAGTTAACGAAAGCAAAGATC
1 CTGTAAAATTAAGGTTCGCAGGCGAAGAGCTACAACCTCTAGCACAGTTAACGAGAGCAAAGATC
* * * * *
83187434 CCAGCTGTAAAATTAAGGTTCAC-AG-GCAAAGAGTCGCGACCTCCAGCACAATTAGTAAGAGAA
66 CCAGCTGTAAAAGTAAGGTTCACAAGTG-AAA-AGCCACGACCTCCAACACAATTAGCAAGAGAA
* *
83187497 AAGCTCCCAACTATAAAACTAAGGTTTGCATGAGAAGAGCCACAACCTCCAGCACAATTAGCAAG
129 AAGCTCCCAACTATAAAACTAAGGTTCGCAGGAGAAGAGCCACAACCTCCAGCACAATTAGCAAG
*
83187562 AGCAGAACTCCCAT
194 AGCAGAACTCCCAG
* * * * * *
83187576 CTGTAAAATTAAAAGTTCACAGGCGAAAAGCAACAACCTCTAGCACAGTTAGCGAGAGCAAAGCT
1 CTGTAAAATT-AAGGTTCGCAGGCGAAGAGCTACAACCTCTAGCACAGTTAACGAGAGCAAAGAT
83187641 CCCAGCTGTAAAA
65 CCCAGCTGTAAAA
83187654 CAAATGTTCA
Statistics
Matches: 240, Mismatches: 40, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
205 1 0.00
206 6 0.03
207 172 0.72
208 61 0.25
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.19
Consensus pattern (207 bp):
CTGTAAAATTAAGGTTCGCAGGCGAAGAGCTACAACCTCTAGCACAGTTAACGAGAGCAAAGATC
CCAGCTGTAAAAGTAAGGTTCACAAGTGAAAAGCCACGACCTCCAACACAATTAGCAAGAGAAAA
GCTCCCAACTATAAAACTAAGGTTCGCAGGAGAAGAGCCACAACCTCCAGCACAATTAGCAAGAG
CAGAACTCCCAG
Found at i:83191984 original size:42 final size:42
Alignment explanation
Indices: 83191876--83192076 Score: 235
Period size: 42 Copynumber: 4.8 Consensus size: 42
83191866 TGTTCCAATT
* * * *
83191876 CCATATCCCAGTTATGGTCTTACATGTAATCTCGTATCGATG
1 CCATATCCCAGATATGGTCTTACAAGTAGTCTCATATCGATG
* * * *
83191918 CCAATAGCCCAGCTATGGTCTTACAAGAAGTCTTATATCGATG
1 CC-ATATCCCAGATATGGTCTTACAAGTAGTCTCATATCGATG
* *
83191961 CCATATCCCAGATATGGTCTTACACGTAGTCTCATATTGATG
1 CCATATCCCAGATATGGTCTTACAAGTAGTCTCATATCGATG
*
83192003 CCATATCCTAGATATGGTCTTACACA-TAGTCTCATAGT-GATG
1 CCATATCCCAGATATGGTCTTACA-AGTAGTCTCATA-TCGATG
* * *
83192045 CCATATCCTAAATATGGTCTTACACGTAGTCT
1 CCATATCCCAGATATGGTCTTACAAGTAGTCT
83192077 TAGTAACCCT
Statistics
Matches: 138, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
42 102 0.74
43 36 0.26
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.33
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACAAGTAGTCTCATATCGATG
Found at i:83197465 original size:26 final size:29
Alignment explanation
Indices: 83197412--83197467 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 29
83197402 AAGTTTCCAT
* *
83197412 TGATGAATATTGTGATTTTTGATGTTATA
1 TGATGAATATTGTGAATGTTGATGTTATA
83197441 TGATGAAT-TTG-GAATGTTGAT-TTATA
1 TGATGAATATTGTGAATGTTGATGTTATA
83197467 T
1 T
83197468 TTAAAAGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.24
27 8 0.32
28 3 0.12
29 8 0.32
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (29 bp):
TGATGAATATTGTGAATGTTGATGTTATA
Found at i:83198057 original size:42 final size:41
Alignment explanation
Indices: 83197945--83198067 Score: 149
Period size: 42 Copynumber: 3.0 Consensus size: 41
83197935 GAAATATTTG
*
83197945 AGATAGCTTCAGCTATGCATTGGCACTTAGTATGCGAGATCA
1 AGATAGCTTCAGCTAT-CATTGGCACTTAGTGTGCGAGATCA
* *
83197987 AGATAGCTTCAGCTATCATTGGCACTTAGTGTGCGTGATTA
1 AGATAGCTTCAGCTATCATTGGCACTTAGTGTGCGAGATCA
* * * *
83198028 AGTTAGCTTCGGGTAGGT-ATTGGCACTTAGTGTGTGAGAT
1 AGATAGCTTCAGCTA--TCATTGGCACTTAGTGTGCGAGAT
83198068 TCCTGAGTAA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
41 34 0.48
42 36 0.51
43 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (41 bp):
AGATAGCTTCAGCTATCATTGGCACTTAGTGTGCGAGATCA
Found at i:83198199 original size:32 final size:32
Alignment explanation
Indices: 83198133--83198199 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
83198123 TGAGTATGAG
* * **
83198133 ATTGGTACGAGATGGTATAGGTATGTACGGAA
1 ATTGGTACGAGATGGTACAAGTATGTACAAAA
*
83198165 ATTGGTACGATATGGTACAAGTATGTACAAAA
1 ATTGGTACGAGATGGTACAAGTATGTACAAAA
83198197 ATT
1 ATT
83198200 CAATTGAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (32 bp):
ATTGGTACGAGATGGTACAAGTATGTACAAAA
Found at i:83206656 original size:40 final size:40
Alignment explanation
Indices: 83206601--83206778 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
83206591 CGGATGATAA
*
83206601 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
83206641 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
83206681 CCGGGATAAGTCCTGAAGGCATTTGTGCGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
83206721 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
83206761 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
83206779 TACTTGGTTG
Statistics
Matches: 125, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 16 0.13
40 109 0.87
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:83210135 original size:40 final size:40
Alignment explanation
Indices: 83210041--83210265 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
83210031 TATTCGAATG
*
83210041 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
83210082 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
83210122 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
83210162 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
83210202 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
83210242 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
83210266 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:83210221 original size:80 final size:80
Alignment explanation
Indices: 83210041--83210301 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
83210031 TATTCGAATG
* * * *
83210041 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
83210106 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
83210122 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
83210187 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
83210202 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
83210267 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
83210281 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
83210302 ATTTCTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:83210255 original size:120 final size:120
Alignment explanation
Indices: 83210041--83210301 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
83210031 TATTCGAATG
* * *
83210041 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
83210106 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
83210162 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
83210225 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
83210281 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
83210302 ATTTCTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:83218400 original size:40 final size:40
Alignment explanation
Indices: 83218223--83218444 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
83218213 TATTCGAATG
* *
83218223 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
83218264 ATAACCGGACTAAGATCCAAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
83218304 ATGTCCGGGCTAAGACCCGAAGGCATTTGTGCTA--G-CG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
83218341 ATATCCGGGCTAAAACCCGAAGACATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
83218381 ATATCCGGGATAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
83218421 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
83218445 CTTGTGCAAG
Statistics
Matches: 147, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
37 33 0.22
39 1 0.01
40 85 0.58
41 28 0.19
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:83218408 original size:77 final size:78
Alignment explanation
Indices: 83218223--83218480 Score: 236
Period size: 77 Copynumber: 3.3 Consensus size: 78
83218213 TATTCGAATG
* * * * * *
83218223 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCAAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGGCGA-TAT--CCGGGCTAAGACCCGAAGAC
*
83218288 ATTCGTGCGAGTTGCT
63 ATTCGTGCGAGTCGCT
* * *
83218304 ATGTCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGATATCCGGGCTAAAACCCGAAGACATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGGCGATATCCGGGCTAAGACCCGAAGACATT
* *
83218368 TGTGCTAG-CGACT
66 CGTGCGAGTCG-CT
* * * * * *
83218381 ATATCCGGGATAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-G-CGATATCCGGGCTAAGACCCGAAGACA
* * *
83218446 TT-GTGCAAGTAGTT
64 TTCGTGCGAGTCGCT
*
83218460 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
83218481 ATTTCTTGAG
Statistics
Matches: 146, Mismatches: 26, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
76 1 0.01
77 56 0.38
78 13 0.09
79 17 0.12
80 28 0.19
81 31 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGGCGATATCCGGGCTAAGACCCGAAGACATT
CGTGCGAGTCGCT
Found at i:83225281 original size:6 final size:6
Alignment explanation
Indices: 83225270--83225300 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
83225260 ACTCAGTGTA
83225270 ATTCTG ATTCTG ATTCTG ATTCTG AATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG -ATTCTG
83225301 GATAGATGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:83279572 original size:39 final size:39
Alignment explanation
Indices: 83279520--83279690 Score: 211
Period size: 39 Copynumber: 4.3 Consensus size: 39
83279510 GGACTAAGAT
83279520 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
*
83279559 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * *
83279599 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
83279639 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
83279678 CCGAAGGCATTTG
1 CCGAAGGCATTTG
83279691 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 65 0.56
40 51 0.44
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:83279603 original size:79 final size:79
Alignment explanation
Indices: 83279467--83279690 Score: 231
Period size: 79 Copynumber: 2.8 Consensus size: 79
83279457 TTGAATGCTG
* * * * * * *
83279467 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
83279530 TTGTGCGAGATA-CAAA
63 TTGTGCGAGATATCAAA
* * *
83279546 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
* * *
83279610 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * *
83279626 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
83279691 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 90 0.73
80 31 0.25
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:83279708 original size:79 final size:80
Alignment explanation
Indices: 83279547--83279723 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
83279537 AGATACAAAT
* * *
83279547 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
83279611 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
83279626 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
83279690 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
83279705 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
83279724 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 16 0.19
79 59 0.71
80 8 0.10
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:83287492 original size:39 final size:39
Alignment explanation
Indices: 83287440--83287610 Score: 211
Period size: 39 Copynumber: 4.3 Consensus size: 39
83287430 GGACTAAGAT
83287440 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAG-C
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
*
83287479 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * *
83287519 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
83287559 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
83287598 CCGAAGGCATTTG
1 CCGAAGGCATTTG
83287611 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
39 65 0.56
40 51 0.44
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:83287523 original size:79 final size:79
Alignment explanation
Indices: 83287387--83287610 Score: 231
Period size: 79 Copynumber: 2.8 Consensus size: 79
83287377 TTGAATGCTG
* * * * * * *
83287387 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAAACCGGGCTAAG-TCCCGAAGGCAT
83287450 TTGTGCGAGATA-CAAA
63 TTGTGCGAGATATCAAA
* * *
83287466 TTCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATT
* * *
83287530 CGTGCGAGTTATTAAA
64 TGTGCGAGATATCAAA
* * *
83287546 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
83287611 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 90 0.73
80 31 0.25
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATATCAAA
Found at i:83287628 original size:79 final size:80
Alignment explanation
Indices: 83287467--83287643 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
83287457 AGATACAAAT
* * *
83287467 TCCGGGTTAAG-CCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
83287531 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * *
83287546 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
83287610 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
83287625 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
83287644 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 16 0.19
79 59 0.71
80 8 0.10
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:83290490 original size:41 final size:41
Alignment explanation
Indices: 83290358--83290491 Score: 130
Period size: 41 Copynumber: 3.2 Consensus size: 41
83290348 CCGGCATTAC
*
83290358 GCTTACTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAA
1 GCTTGCTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAA
* * * * *
83290399 CCTTGCTAGACCTTTA-AGTCCGA-AATCATTTCACCAGCATT-AC
1 GCTTGCTAG-GC-TCAGAGCCCGATAAT-A-TTCACCAGC-TTAAA
* *
83290442 GCCTGCTAGGCTCGGAGCCCGATAATATTCACCAGCTTAAA
1 GCTTGCTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAA
83290483 GCTTGCTAG
1 GCTTGCTAG
83290492 ACCTTTAAGT
Statistics
Matches: 71, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
40 2 0.03
41 29 0.41
42 16 0.23
43 22 0.31
44 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (41 bp):
GCTTGCTAGGCTCAGAGCCCGATAATATTCACCAGCTTAAA
Found at i:83290558 original size:84 final size:84
Alignment explanation
Indices: 83290314--83290547 Score: 355
Period size: 84 Copynumber: 2.8 Consensus size: 84
83290304 CACCGGCAAT
* * * *
83290314 AAGCCTGCTAGACCTTTAAGTCTGATATCA-TTCACCGGCATTACGCTTACTAGGCTCAGAGCCC
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGACATTACGCCTGCTAGGCTCAGAGCCC
83290378 GATAATATTCACCAGCTTA
66 GATAATATTCACCAGCTTA
* * * *
83290397 AACCTTGCTAGACCTTTAAGTCCGAAATCATTTCACC-AGCATTACGCCTGCTAGGCTCGGAGCC
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGA-CATTACGCCTGCTAGGCTCAGAGCC
83290461 CGATAATATTCACCAGCTTA
65 CGATAATATTCACCAGCTTA
* *
83290481 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGACATTACGCCTGCTAGGCTTAAAGCCC
1 AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGACATTACGCCTGCTAGGCTCAGAGCCC
83290546 GA
66 GA
83290548 AATTCATCAC
Statistics
Matches: 134, Mismatches: 14, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
83 26 0.19
84 107 0.80
85 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (84 bp):
AAGCTTGCTAGACCTTTAAGTCTGATATCATTTCACCGACATTACGCCTGCTAGGCTCAGAGCCC
GATAATATTCACCAGCTTA
Found at i:83292459 original size:14 final size:15
Alignment explanation
Indices: 83292430--83292459 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
83292420 CAAAATTAAG
83292430 ACATGATACTTTCAC
1 ACATGATACTTTCAC
83292445 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
83292459 A
1 A
83292460 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:83313717 original size:45 final size:45
Alignment explanation
Indices: 83313649--83313775 Score: 157
Period size: 45 Copynumber: 2.8 Consensus size: 45
83313639 TAGGATTACG
*
83313649 ATATGTGTTTTCGGGTAAGACCACGTCTGAGACATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGAGACATTGGCATCGAT
* * * * *
83313694 ATATGTTTTTTCGTGTAATACCACGTCTGGGACGTTGGCATTGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGAGACATTGGCATCGAT
* **
83313739 ATATGTGGTTAT-GTGTAAGACCATATCTGAGACATTG
1 ATATGT-GTTTTCGTGTAAGACCACGTCTGAGACATTG
83313776 TGTAACACCC
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
45 65 0.96
46 3 0.04
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.35
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGAGACATTGGCATCGAT
Found at i:83314976 original size:29 final size:30
Alignment explanation
Indices: 83314909--83315027 Score: 117
Period size: 29 Copynumber: 4.2 Consensus size: 30
83314899 TACATACATG
* *
83314909 CATATGGCCCAT-TAGGCCCAATCCA-GTT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* * *
83314937 CAAACGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
*
83314966 CTTATGGCCCA-CTAGGCCCAATTC-TCATT
1 CATATGGCCCATCTAGGCCCAATTCAT-ATT
*
83314995 CATATGGCCCAT-TAGGCCCAAATCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
83315024 -ATAT
1 CATAT
83315028 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
28 26 0.35
29 47 0.64
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:83315022 original size:58 final size:57
Alignment explanation
Indices: 83314911--83315023 Score: 140
Period size: 58 Copynumber: 2.0 Consensus size: 57
83314901 CATACATGCA
* **
83314911 TATGGCCCATTAGGCCCAATCCAGTTCAAACGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCCAGTTCAAACGGCCCATCTGGCCCAAATCATATTCT
* *
83314968 TATGGCCCACTAGGCCCAATTCTCA-TTCATATGGCCCAT-TAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TC-CAGTTCAAACGGCCCATCT-GGCCCAAATCATATT
83315024 ATATTCATGC
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
57 19 0.40
58 27 0.56
59 2 0.04
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCCAGTTCAAACGGCCCATCTGGCCCAAATCATATTCT
Found at i:83318803 original size:96 final size:96
Alignment explanation
Indices: 83318735--83319003 Score: 463
Period size: 96 Copynumber: 2.8 Consensus size: 96
83318725 GATAATTGTG
*
83318735 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
83318798 ATGTGATAAGGCCG-AATGGCCGATGTGATGA
66 ATGTGATAAGG-CGTAATGGCCGATGTGATGA
*
83318829 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
83318894 ATGTGATAAGGCCTAATGGCCGATGTGATGA
66 ATGTGATAAGGCGTAATGGCCGATGTGATGA
83318925 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
83318990 ATATGTGATAAGGC
64 ATATGTGATAAGGC
83319004 TGAATGTGAA
Statistics
Matches: 166, Mismatches: 4, Indels: 6
0.94 0.02 0.03
Matches are distributed among these distances:
94 5 0.03
95 3 0.02
96 141 0.85
98 17 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCGTAATGGCCGATGTGATGA
Found at i:83319020 original size:129 final size:130
Alignment explanation
Indices: 83318871--83319270 Score: 531
Period size: 129 Copynumber: 3.0 Consensus size: 130
83318861 AATGGCCGAT
*
83318871 GTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
83318936 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
66 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
* * *
83319001 G-GCTGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
83319065 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
66 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA--T-AT---G
*
83319130 CCTAATAGCCGA
125 --TGATA----A
*
83319142 TGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 -GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
* * * * * * *
83319207 G--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATA
65 GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
83319268 A
130 A
83319269 GT
1 GT
83319271 CCCGAAGGGC
Statistics
Matches: 239, Mismatches: 17, Indels: 32
0.83 0.06 0.11
Matches are distributed among these distances:
126 2 0.01
127 1 0.00
129 114 0.48
130 1 0.00
131 5 0.02
132 2 0.01
133 1 0.00
135 1 0.00
136 2 0.01
137 4 0.02
140 1 0.00
141 45 0.19
142 1 0.00
143 59 0.25
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (130 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
Found at i:83319025 original size:31 final size:32
Alignment explanation
Indices: 83318971--83319040 Score: 115
Period size: 31 Copynumber: 2.2 Consensus size: 32
83318961 GCCGATGTGA
83318971 TGAATGTGAAAGTGTATATATATGTGATAAGGC
1 TGAATGTGAAAGTG-ATATATATGTGATAAGGC
83319004 TGAATGTGAAAGTG-TATATATGTGATAAGGC
1 TGAATGTGAAAGTGATATATATGTGATAAGGC
*
83319035 CGAATG
1 TGAATG
83319041 GCCAATGTGA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 22 0.61
33 14 0.39
ACGTcount: A:0.36, C:0.04, G:0.29, T:0.31
Consensus pattern (32 bp):
TGAATGTGAAAGTGATATATATGTGATAAGGC
Found at i:83319028 original size:49 final size:49
Alignment explanation
Indices: 83318735--83319003 Score: 469
Period size: 49 Copynumber: 5.6 Consensus size: 49
83318725 GATAATTGTG
*
83318735 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83318782 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83318829 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
83318878 ATGTGAAAATG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83318925 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
83318974 ATGTGAAAGTGTATATATATGTGATAAGGC
1 ATGTGAAAGTGTATATATATGTGATAAGGC
83319004 TGAATGTGAA
Statistics
Matches: 211, Mismatches: 5, Indels: 10
0.93 0.02 0.04
Matches are distributed among these distances:
47 96 0.45
48 2 0.01
49 113 0.54
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:83319032 original size:80 final size:81
Alignment explanation
Indices: 83318922--83319083 Score: 290
Period size: 80 Copynumber: 2.0 Consensus size: 81
83318912 GCCGATGTGA
* *
83318922 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TGAATGTGAAAGTG-ATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
83318987 TATATATGTGATAAGGC
65 TATATATGTGATAAGGC
83319004 TGAATGTGAAAGTG-TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 TGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
83319068 ATATATGTGATAAGGC
66 ATATATGTGATAAGGC
83319084 CTAATGGCCG
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
80 64 0.82
82 14 0.18
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (81 bp):
TGAATGTGAAAGTGATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
ATATATGTGATAAGGC
Found at i:83319057 original size:47 final size:47
Alignment explanation
Indices: 83319004--83319269 Score: 406
Period size: 47 Copynumber: 5.6 Consensus size: 47
83318994 GTGATAAGGC
* *
83319004 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
83319051 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
*
83319100 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
*
83319147 TGAATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
* * * * * *
83319194 TGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
* *
83319241 TGGATGTGAAAGTGTATAAATGTGATAAG
1 TGAATGTGAAAGTGTATATATGTGATAAG
83319270 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 156 0.78
49 45 0.22
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA
Found at i:83323288 original size:42 final size:42
Alignment explanation
Indices: 83323215--83323295 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
83323205 TATTTTGTCC
* * *
83323215 ACACGGGCAGACACACGGGCGTGTGTCTAGACCTTGTGTTAT
1 ACACGGGCAGACACAAGGGCATGTGTCTAGACCATGTGTTAT
* *
83323257 ACACGGTCAGATACAAGGGCATGTAGT-TAGACCATGTGT
1 ACACGGGCAGACACAAGGGCATGT-GTCTAGACCATGTGT
83323296 CCTCTGCACC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 31 0.94
43 2 0.06
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (42 bp):
ACACGGGCAGACACAAGGGCATGTGTCTAGACCATGTGTTAT
Found at i:83327318 original size:154 final size:154
Alignment explanation
Indices: 83327038--83327338 Score: 476
Period size: 154 Copynumber: 2.0 Consensus size: 154
83327028 AGTTTCCTTA
* * *
83327038 AGGAAATTACATGAATGACTTCAAATCTTAAAGTAAAGAAGTAGTCAAAGAACTTTCAAGAAATA
1 AGGAAATTACATGAATAACTTCAAACCTTAAAGTAAAGAAGTAATCAAAGAACTTTCAAGAAATA
* * *
83327103 TATAAAACCCTACGAAAACGCTTCTAAAACCAACTCCTAATAGTAGACCTGCAAATGATCAGTAG
66 TATAAAACCCTACGAAAACGCTTCTAAAACCAACTCCTAATAGTAGACCCGCAAATGATCAGCAA
83327168 CGTAGGGTGCTTTGTCAAACTGTG
131 CGTAGGGTGCTTTGTCAAACTGTG
** * *
83327192 AGGAAATTACATGAATAACTTCAAACCTTGGAGTAAAGAAGTAATCGAGGAACTTTCAAGAAATA
1 AGGAAATTACATGAATAACTTCAAACCTTAAAGTAAAGAAGTAATCAAAGAACTTTCAAGAAATA
* * *
83327257 TATAAAACCCTACGAAAATGGTTCTAGAACCAACTCCTAATAGTAGACCCGCAAATGATCAGCAA
66 TATAAAACCCTACGAAAACGCTTCTAAAACCAACTCCTAATAGTAGACCCGCAAATGATCAGCAA
*
83327322 CGTAGGGTGTTTTGTCA
131 CGTAGGGTGCTTTGTCA
83327339 TAATGAGAGG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
154 133 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.24
Consensus pattern (154 bp):
AGGAAATTACATGAATAACTTCAAACCTTAAAGTAAAGAAGTAATCAAAGAACTTTCAAGAAATA
TATAAAACCCTACGAAAACGCTTCTAAAACCAACTCCTAATAGTAGACCCGCAAATGATCAGCAA
CGTAGGGTGCTTTGTCAAACTGTG
Found at i:83330183 original size:33 final size:33
Alignment explanation
Indices: 83330139--83330204 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
83330129 AAATATTAAG
83330139 TATAGACTGAGATACTCCAATTTTAAGTTTTCT
1 TATAGACTGAGATACTCCAATTTTAAGTTTTCT
* *
83330172 TATAGATTGAGATATTCCAATTTTAAGTTTTCT
1 TATAGACTGAGATACTCCAATTTTAAGTTTTCT
83330205 ATGTTGAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (33 bp):
TATAGACTGAGATACTCCAATTTTAAGTTTTCT
Found at i:83331075 original size:23 final size:23
Alignment explanation
Indices: 83331050--83331152 Score: 111
Period size: 23 Copynumber: 4.5 Consensus size: 23
83331040 GTGTTAAAAG
*
83331050 TTAATGTGATTTATACTGAAA-A
1 TTAATGTGATTTATACTTAAATA
* *
83331072 GTTAATGTGCTTTATGCTTAAATA
1 -TTAATGTGATTTATACTTAAATA
*
83331096 TTAAT-TGGATTTATTCTTAAATA
1 TTAATGT-GATTTATACTTAAATA
* *
83331119 TTAATGTGATTTATTCCTAAATA
1 TTAATGTGATTTATACTTAAATA
*
83331142 TTAAAGTGATT
1 TTAATGTGATT
83331153 AATGTGTAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
22 1 0.01
23 67 0.96
24 2 0.03
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.47
Consensus pattern (23 bp):
TTAATGTGATTTATACTTAAATA
Found at i:83334914 original size:21 final size:22
Alignment explanation
Indices: 83334870--83334916 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
83334860 TGCAGGGCTC
* *
83334870 ACACGCCTGTGTAGTCCAAGGG
1 ACACGCCCGTGTAGACCAAGGG
*
83334892 ACACGCCCGTGT-GACCTAGGG
1 ACACGCCCGTGTAGACCAAGGG
83334913 ACAC
1 ACAC
83334917 CCTCGTGCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.23, C:0.32, G:0.30, T:0.15
Consensus pattern (22 bp):
ACACGCCCGTGTAGACCAAGGG
Found at i:83340143 original size:30 final size:30
Alignment explanation
Indices: 83340085--83340145 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
83340075 TTCCTGAGCC
**
83340085 TAGGGGCAAAAGTGCAATTATGCAAAAGTT
1 TAGGGGCAAAAACGCAATTATGCAAAAGTT
* * *
83340115 TAGGGGCAAAAACGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAACGCAATTATGCAAAAGTT
83340145 T
1 T
83340146 GTATTAAATG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAAACGCAATTATGCAAAAGTT
Found at i:83345736 original size:11 final size:11
Alignment explanation
Indices: 83345720--83345744 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
83345710 TAGACCAATA
83345720 ATCACAAGGTC
1 ATCACAAGGTC
83345731 ATCACAAGGTC
1 ATCACAAGGTC
83345742 ATC
1 ATC
83345745 CCCATAGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.28, G:0.16, T:0.20
Consensus pattern (11 bp):
ATCACAAGGTC
Found at i:83345991 original size:43 final size:42
Alignment explanation
Indices: 83345928--83346091 Score: 197
Period size: 42 Copynumber: 3.9 Consensus size: 42
83345918 TACCGTACCA
* * *
83345928 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATAGCCCAGATATGGTCTTACACGTAATCTCATATCG
* * *
83345970 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCACATCG
1 ATGCC-ATAGCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
83346013 ATGCCATATG-CCAGATATGGTCTTATACG-AAGTCTCATACCG
1 ATGCCATA-GCCCAGATATGGTCTTACACGTAA-TCTCATATCG
* *
83346055 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
1 ATGCCATAGCCCAGATATGGTCTTACACGTAATCTCA
83346092 ATAACCCTAA
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
41 2 0.02
42 63 0.61
43 39 0.38
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:83346057 original size:85 final size:84
Alignment explanation
Indices: 83345928--83346091 Score: 224
Period size: 85 Copynumber: 1.9 Consensus size: 84
83345918 TACCGTACCA
* * *
83345928 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCATATCGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATACCGATGCC-ATAGCCCAGATATGGTC
83345993 TTACACGAAATCTCACATCG
65 TTACACGAAATCTCACATCG
* *
83346013 ATGCCATATGCC-AGATATGGTCTTATACG-AAGTCTCATACCGATGCCATATCCCAGATATGGT
1 ATGCCATAT-CCTAGATATGGTCTTACACGTAA-TCTCATACCGATGCCATAGCCCAGATATGGT
* *
83346076 CTTACATGTAATCTCA
64 CTTACACGAAATCTCA
83346092 ATAACCCTAA
Statistics
Matches: 70, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 30 0.43
85 38 0.54
86 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCTAGATATGGTCTTACACGTAATCTCATACCGATGCCATAGCCCAGATATGGTCT
TACACGAAATCTCACATCG
Found at i:83348962 original size:21 final size:21
Alignment explanation
Indices: 83348924--83348963 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
83348914 GCCTGATAAT
*
83348924 GCTTGAAAAATGTTAAATCCC
1 GCTTGAAAAATGTAAAATCCC
83348945 GCTTGAATAAATG-AAAATC
1 GCTTGAA-AAATGTAAAATC
83348964 GATGGATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (21 bp):
GCTTGAAAAATGTAAAATCCC
Found at i:83351343 original size:15 final size:16
Alignment explanation
Indices: 83351314--83351343 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83351304 CAAACATGCT
83351314 TTAACACATTATCAAA
1 TTAACACATTATCAAA
83351330 TTAACACA-TATCAA
1 TTAACACATTATCAA
83351344 CATGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:83354227 original size:28 final size:28
Alignment explanation
Indices: 83354190--83354277 Score: 113
Period size: 28 Copynumber: 3.1 Consensus size: 28
83354180 AATCGTATTT
* *
83354190 ATATGGCCCATCGGGCCCAATTACATTC
1 ATATGGCCCATCAGGCCCAATCACATTC
* * *
83354218 ATATAGCCCATTAGGCCCAATCACTTTC
1 ATATGGCCCATCAGGCCCAATCACATTC
* *
83354246 ATATGGCCCGTCAGGCCGAATCACATTC
1 ATATGGCCCATCAGGCCCAATCACATTC
83354274 ATAT
1 ATAT
83354278 TCATGCAATC
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (28 bp):
ATATGGCCCATCAGGCCCAATCACATTC
Found at i:83354359 original size:18 final size:18
Alignment explanation
Indices: 83354336--83354370 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
83354326 TGCCTACTAT
83354336 GGCCCATACAGCCCATTG
1 GGCCCATACAGCCCATTG
**
83354354 GGCCCATTTAGCCCATT
1 GGCCCATACAGCCCATT
83354371 CTGGCCCGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.37, G:0.20, T:0.23
Consensus pattern (18 bp):
GGCCCATACAGCCCATTG
Found at i:83358814 original size:28 final size:28
Alignment explanation
Indices: 83358772--83358874 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
83358762 AGGCCCCTTT
* *
83358772 AGGCCCGATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
*
83358800 AGGCCCAATCACATTCATATGGCCTATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
83358828 AGGCCCAATCACTTTCGTATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
83358856 AGGCCTAATCACATTCATA
1 AGGCCCAATCACATTCATA
83358875 GTCATGCAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:83359111 original size:16 final size:16
Alignment explanation
Indices: 83359090--83359120 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83359080 CCAAACTTTT
83359090 GGCTTTTCGGCATTTC
1 GGCTTTTCGGCATTTC
*
83359106 GGCTTTTCGGTATTT
1 GGCTTTTCGGCATTT
83359121 TGGGATTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.19, G:0.26, T:0.48
Consensus pattern (16 bp):
GGCTTTTCGGCATTTC
Found at i:83361091 original size:341 final size:341
Alignment explanation
Indices: 83360468--83361155 Score: 1112
Period size: 341 Copynumber: 2.0 Consensus size: 341
83360458 AATAAGACGC
* * *
83360468 TCATGAAGAGTTGCGTTTGTGTCCGCATTATATGCAGGATCACAACCAATCATACATCAGGACGC
1 TCATGAAGAGCTGCATTTATGTCCGCATTATATGCAGGATCACAACCAATCATACATCAGGACGC
* *
83360533 TCACAAAGAGCTACGGTAGTGTGCAACACATGCTAAACCACTACCGACCAGGATGCTTGCAGGAA
66 TCACAAAAAGCTACGGTAGTGTGCAACACATGCTAAACCACTACCGACCAAGATGCTTGCAGGAA
* * * * * * *
83360598 CTATATAACAGGATACTCGAGAGGCTCTATCAGGATTACTTGTTCGAGGTAGATCCTTTCTGTAA
131 CAATATAACAGGATACTCGAAAGGCTATATCAGAATTACTTGTTCGAGCTACATCCCTTCTGTAA
83360663 CATATACAGAATCACCTTCACATTTGGGAAATCACATGTATCCATCGATTTTCATTATTCCAACG
196 CATATACAGAATCACCTTCACATTTGGGAAATCACATGTATCCATCGATTTTCATTATTCCAACG
83360728 GAACTTAACATTTTAAACACATTTCTAATCATGAAATCATTTCATGTATTTATAACATTCCATAA
261 GAACTTAACATTTTAAACACATTTCTAATCATGAAATCATTTCATGTATTTATAACATTCCATAA
83360793 ATCACATAAACATATA
326 ATCACATAAACATATA
** * **
83360809 TCATGAAGAGCTGCATTTATGTCCGCATTATATGCAGGATCACAACTGATCGTATGTCAGGACGC
1 TCATGAAGAGCTGCATTTATGTCCGCATTATATGCAGGATCACAACCAATCATACATCAGGACGC
* * *
83360874 TCACAAAAAGCTATGGTAGTGTGCAACACATGCTAAATCACTACCGATCAAGATGCTTGCAGGAA
66 TCACAAAAAGCTACGGTAGTGTGCAACACATGCTAAACCACTACCGACCAAGATGCTTGCAGGAA
*
83360939 CAATATAACAGGATACTTGAAAGGCTATATC-GAAATTA-TTCG-TCTGAGCTACATCCCTTCTG
131 CAATATAACAGGATACTCGAAAGGCTATATCAG-AATTACTT-GTTC-GAGCTACATCCCTTCTG
* * *
83361001 TAACATATGCAGAATCACCTTCATATTTGGGAAATCACATGTATCCATCGATTTTCATTATTCTA
193 TAACATATACAGAATCACCTTCACATTTGGGAAATCACATGTATCCATCGATTTTCATTATTCCA
83361066 ACGGAACTTAACATTTTAAACACATTTCTAATCATGAAATCATTTCATGTATTTATAACATTCCA
258 ACGGAACTTAACATTTTAAACACATTTCTAATCATGAAATCATTTCATGTATTTATAACATTCCA
83361131 TAAATCACATAAACATATA
323 TAAATCACATAAACATATA
83361150 TCATGA
1 TCATGA
83361156 TCAACAATCA
Statistics
Matches: 320, Mismatches: 24, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
340 5 0.02
341 315 0.98
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (341 bp):
TCATGAAGAGCTGCATTTATGTCCGCATTATATGCAGGATCACAACCAATCATACATCAGGACGC
TCACAAAAAGCTACGGTAGTGTGCAACACATGCTAAACCACTACCGACCAAGATGCTTGCAGGAA
CAATATAACAGGATACTCGAAAGGCTATATCAGAATTACTTGTTCGAGCTACATCCCTTCTGTAA
CATATACAGAATCACCTTCACATTTGGGAAATCACATGTATCCATCGATTTTCATTATTCCAACG
GAACTTAACATTTTAAACACATTTCTAATCATGAAATCATTTCATGTATTTATAACATTCCATAA
ATCACATAAACATATA
Found at i:83362107 original size:14 final size:14
Alignment explanation
Indices: 83362088--83362114 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
83362078 CAAAATGGAT
83362088 AAAATTTTCTTATC
1 AAAATTTTCTTATC
83362102 AAAATTTTCTTAT
1 AAAATTTTCTTAT
83362115 GACATTCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (14 bp):
AAAATTTTCTTATC
Found at i:83364532 original size:20 final size:20
Alignment explanation
Indices: 83364509--83364615 Score: 88
Period size: 20 Copynumber: 5.3 Consensus size: 20
83364499 GGGCACAAAT
*
83364509 GTGCAAACAGGGGCACCGTA
1 GTGCAAACAGGGGCACCGAA
* * ** *
83364529 GTGCGAATAGGAACATCGAA
1 GTGCAAACAGGGGCACCGAA
* * * *
83364549 GTGTATACAGGGGAACTGAA
1 GTGCAAACAGGGGCACCGAA
* *
83364569 GTGCAAATAGGGGCACCAAA
1 GTGCAAACAGGGGCACCGAA
*
83364589 GTGCAAACAGGGGCACCAAA
1 GTGCAAACAGGGGCACCGAA
*
83364609 GTACAAA
1 GTGCAAA
83364616 TCCCTTACAA
Statistics
Matches: 64, Mismatches: 23, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.38, C:0.19, G:0.31, T:0.12
Consensus pattern (20 bp):
GTGCAAACAGGGGCACCGAA
Found at i:83364616 original size:40 final size:39
Alignment explanation
Indices: 83364499--83364616 Score: 110
Period size: 40 Copynumber: 2.9 Consensus size: 39
83364489 GTGTGGACAA
* *
83364499 GGGCACAAATGTGCAAACAGGGGCACCGTAGTGCGAATAG
1 GGGCACAAA-GTGCAAACAGGGGCACCGAAGTGCAAATAG
** * * * * *
83364539 GAACATCGAAGTGTATACAGGGGAACTGAAGTGCAAATAG
1 GGGCA-CAAAGTGCAAACAGGGGCACCGAAGTGCAAATAG
* *
83364579 GGGCACCAAAGTGCAAACAGGGGCACCAAAGTACAAAT
1 GGGCA-CAAAGTGCAAACAGGGGCACCGAAGTGCAAAT
83364617 CCCTTACAAA
Statistics
Matches: 58, Mismatches: 19, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
40 55 0.95
41 3 0.05
ACGTcount: A:0.38, C:0.19, G:0.31, T:0.13
Consensus pattern (39 bp):
GGGCACAAAGTGCAAACAGGGGCACCGAAGTGCAAATAG
Found at i:83367232 original size:79 final size:81
Alignment explanation
Indices: 83367123--83367305 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
83367113 TACTCGTTCA
* *
83367123 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
83367186 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
83367203 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
83367266 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
83367282 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
83367306 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:83367305 original size:40 final size:40
Alignment explanation
Indices: 83367102--83367305 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
83367092 CGGAATTTAA
** *
83367102 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83367142 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
83367182 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
83367221 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
83367261 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
83367301 CCGGA
1 CCGGA
83367306 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:83375318 original size:38 final size:39
Alignment explanation
Indices: 83375208--83375390 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 39
83375198 GCTACTCGTT
*
83375208 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCA
*
83375247 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* *
83375287 CCAATGCCTTCGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
83375325 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
83375366 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
83375391 CATCATTCGA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
38 35 0.28
39 13 0.10
40 64 0.51
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:83375374 original size:78 final size:80
Alignment explanation
Indices: 83375208--83375390 Score: 214
Period size: 78 Copynumber: 2.3 Consensus size: 80
83375198 GCTACTCGTT
* *
83375208 CAAATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAA-GCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
83375272 ATTTAGTAACTCGCAC
65 ATATAGTAACTAGCAC
* **
83375288 CAATGCCTTCGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
83375350 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
83375366 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTC-GGACTTAGCCCGGA
83375391 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
77 3 0.03
78 56 0.64
79 15 0.17
80 14 0.16
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:83378151 original size:40 final size:40
Alignment explanation
Indices: 83378069--83378157 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
83378059 GAGTACCGAG
* * ***
83378069 GTACTAACAGGGGCACGTATGTGCTTTCAGGGGTATTGAA
1 GTACAAACAGGGGCACGTATGTGATTTCAGGGGTACCAAA
*
83378109 GTAGAAACAGGGGCACGTATGTGAATTT-AGGGGTACCAAA
1 GTACAAACAGGGGCACGTATGTG-ATTTCAGGGGTACCAAA
83378149 GTACAAACA
1 GTACAAACA
83378158 AAGGGTACCG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 38 0.93
41 3 0.07
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (40 bp):
GTACAAACAGGGGCACGTATGTGATTTCAGGGGTACCAAA
Found at i:83380109 original size:24 final size:25
Alignment explanation
Indices: 83380047--83380114 Score: 75
Period size: 26 Copynumber: 2.7 Consensus size: 25
83380037 GACTCACCGC
*
83380047 AGCTCGTATGAGCTTACTGTTACATT
1 AGCTCGTATGAGCTTACTATTA-ATT
* * *
83380073 AGCTCATAAGAGCTTACTATT-TTT
1 AGCTCGTATGAGCTTACTATTAATT
*
83380097 AGCTCGTATGAGCCTACT
1 AGCTCGTATGAGCTTACT
83380115 GATTCAGCTT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
24 17 0.49
26 18 0.51
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (25 bp):
AGCTCGTATGAGCTTACTATTAATT
Found at i:83386059 original size:79 final size:80
Alignment explanation
Indices: 83385928--83386075 Score: 246
Period size: 79 Copynumber: 1.9 Consensus size: 80
83385918 TATTCGGATG
* *
83385928 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
83385992 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
*
83386007 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGC
83386071 ATTTG
65 ATTTG
83386076 AGCAAGTAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
78 2 0.03
79 48 0.75
80 14 0.22
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:83386097 original size:79 final size:79
Alignment explanation
Indices: 83385928--83386108 Score: 242
Period size: 79 Copynumber: 2.3 Consensus size: 79
83385918 TATTCGGATG
* *
83385928 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
83385993 TTGTGCGAGTTACT
66 TTGAGCAAGTTACT
*
83386007 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
83386071 ATTTGAGCAAG-TAGCT
64 ATTTGAGCAAGTTA-CT
* * *
83386087 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
83386109 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
78 2 0.02
79 64 0.70
80 25 0.27
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACT
Found at i:83386108 original size:39 final size:40
Alignment explanation
Indices: 83385928--83386075 Score: 246
Period size: 40 Copynumber: 3.7 Consensus size: 40
83385918 TATTCGGATG
* *
83385928 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83385968 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
83386007 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
83386047 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
83386076 AGCAAGTAGC
Statistics
Matches: 101, Mismatches: 4, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
39 35 0.35
40 66 0.65
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:83392303 original size:40 final size:40
Alignment explanation
Indices: 83392259--83392483 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
83392249 CTTGCACAAG
* * *
83392259 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
83392299 GCCTTTGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
83392339 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
83392379 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
83392419 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
83392460 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
83392484 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 127 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:83397507 original size:79 final size:80
Alignment explanation
Indices: 83397376--83397523 Score: 228
Period size: 79 Copynumber: 1.9 Consensus size: 80
83397366 TATTCGGATG
* * *
83397376 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
83397440 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* *
83397455 ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCTGAAGGC
1 ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGC
83397519 ATTTG
65 ATTTG
83397524 AGCAAGTAGC
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
78 2 0.03
79 47 0.76
80 13 0.21
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:83397537 original size:40 final size:40
Alignment explanation
Indices: 83397376--83397523 Score: 228
Period size: 40 Copynumber: 3.7 Consensus size: 40
83397366 TATTCGGATG
* *
83397376 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83397416 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83397455 ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
83397495 ATAACCGGGCTAAGTCCTGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
83397524 AGCAAGTAGC
Statistics
Matches: 98, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 34 0.35
40 64 0.65
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:83397543 original size:79 final size:79
Alignment explanation
Indices: 83397376--83397546 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 79
83397366 TATTCGGATG
* * *
83397376 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
83397441 TTGTGCGAGTTACT
66 TTGAGCAAGTTACT
* *
83397455 ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCTGAAGGC
1 ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
83397519 ATTTGAGCAAG-TAGCT
64 ATTTGAGCAAGTTA-CT
*
83397535 AT-ATCCGGCTAA
1 ATAACCCGGCTAA
83397547 ATTCTGAAGG
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
78 2 0.02
79 58 0.72
80 21 0.26
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACT
Found at i:83397556 original size:39 final size:39
Alignment explanation
Indices: 83397376--83397556 Score: 188
Period size: 40 Copynumber: 4.6 Consensus size: 39
83397366 TATTCGGATG
* * *
83397376 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACC-GGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
* *
83397416 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACC-GGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
*
83397455 ATAACCCGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAA-CCGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
* *
83397495 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCAAG-TAGCT
1 ATAACC-GGCTAAGTCCTGAAGGCATTTGTGCGAGTTA-CT
* * *
83397535 ATATCCGGCTAAATTCTGAAGG
1 ATAACCGGCTAAGTCCTGAAGG
83397557 TACTTGGTTT
Statistics
Matches: 125, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
39 50 0.40
40 75 0.60
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATAACCGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACT
Found at i:83405897 original size:20 final size:20
Alignment explanation
Indices: 83405872--83405912 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
83405862 GGTTTTGAAA
* *
83405872 TAGAACTTATTTAGAAGATT
1 TAGAACTCATTCAGAAGATT
83405892 TAGAACTCATTCAGAAGATT
1 TAGAACTCATTCAGAAGATT
83405912 T
1 T
83405913 TGCATGAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.37
Consensus pattern (20 bp):
TAGAACTCATTCAGAAGATT
Found at i:83406403 original size:16 final size:16
Alignment explanation
Indices: 83406382--83406413 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
83406372 CACAAAGTTG
83406382 AATTTTAGTACTACTT
1 AATTTTAGTACTACTT
83406398 AATTTTAGTACTACTT
1 AATTTTAGTACTACTT
83406414 TTCATCCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.50
Consensus pattern (16 bp):
AATTTTAGTACTACTT
Found at i:83409557 original size:27 final size:26
Alignment explanation
Indices: 83409517--83409576 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
83409507 ATGTATATAT
* *
83409517 ATATCTATTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* *
83409543 ATATCTGTATCTGGTGACTTCGCCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
83409570 ATATCTG
1 ATATCTG
83409577 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.33
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:83417273 original size:13 final size:13
Alignment explanation
Indices: 83417255--83417279 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83417245 AAGTGTGTAG
83417255 AGGGTGGCAAATA
1 AGGGTGGCAAATA
83417268 AGGGTGGCAAAT
1 AGGGTGGCAAAT
83417280 GGCTTGGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.08, G:0.40, T:0.16
Consensus pattern (13 bp):
AGGGTGGCAAATA
Found at i:83418997 original size:17 final size:17
Alignment explanation
Indices: 83418975--83419007 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
83418965 ACTTCCCTTC
83418975 TCATCTTTTCTTTTCTT
1 TCATCTTTTCTTTTCTT
83418992 TCATCTTTTCTTTTCT
1 TCATCTTTTCTTTTCT
83419008 CCATAGCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (17 bp):
TCATCTTTTCTTTTCTT
Found at i:83419677 original size:16 final size:16
Alignment explanation
Indices: 83419647--83419692 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
83419637 TCGGCAAAAG
* *
83419647 TCGAAAAGCCGAAATA
1 TCGAAATGCCAAAATA
*
83419663 TCGAAATGCCAAAATG
1 TCGAAATGCCAAAATA
*
83419679 TTGAAATGCCAAAA
1 TCGAAATGCCAAAA
83419693 AGCTGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.17
Consensus pattern (16 bp):
TCGAAATGCCAAAATA
Found at i:83419979 original size:27 final size:27
Alignment explanation
Indices: 83419949--83420006 Score: 84
Period size: 26 Copynumber: 2.2 Consensus size: 27
83419939 TACTAAAATA
83419949 CCCTAAGTGTG-AAAATAACCATTATAC
1 CCCTAAG-GTGCAAAATAACCATTATAC
*
83419976 CCCT-AGGTGCAAAATGACCATTATAC
1 CCCTAAGGTGCAAAATAACCATTATAC
83420002 CCCTA
1 CCCTA
83420007 GGGTTGATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 3 0.11
26 21 0.75
27 4 0.14
ACGTcount: A:0.36, C:0.28, G:0.12, T:0.24
Consensus pattern (27 bp):
CCCTAAGGTGCAAAATAACCATTATAC
Found at i:83420185 original size:28 final size:27
Alignment explanation
Indices: 83420112--83420193 Score: 92
Period size: 28 Copynumber: 3.0 Consensus size: 27
83420102 GAGGAAGCGT
*
83420112 TCTGGTGGCTCTGTCACAAATATCTATT
1 TCTGGTGGCTCTGTCAC-AATATCTATA
* * *
83420140 TCTGGTGGCCCTGGCACAATTATCTGTA
1 TCTGGTGGCTCTGTCACAA-TATCTATA
* *
83420168 TCTGGTGACTCAGTCACAATATCTAT
1 TCTGGTGGCTCTGTCACAATATCTAT
83420194 TTTGGCAGCC
Statistics
Matches: 44, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
27 8 0.18
28 36 0.82
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
TCTGGTGGCTCTGTCACAATATCTATA
Found at i:83428769 original size:22 final size:22
Alignment explanation
Indices: 83428744--83428790 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
83428734 AACGCCATAG
* *
83428744 ACAGGATAGTACAAAGCCGTAA
1 ACAGGACAATACAAAGCCGTAA
*
83428766 ACAGGACAATACATAGCCGTAA
1 ACAGGACAATACAAAGCCGTAA
83428788 ACA
1 ACA
83428791 TCGCAGCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.47, C:0.21, G:0.19, T:0.13
Consensus pattern (22 bp):
ACAGGACAATACAAAGCCGTAA
Found at i:83429495 original size:27 final size:26
Alignment explanation
Indices: 83429465--83429783 Score: 148
Period size: 27 Copynumber: 11.9 Consensus size: 26
83429455 GGTAAATCTA
*
83429465 CAAACCAAGGGTATTTCGATAATTTTG
1 CAAATCAAGGGTATTTCG-TAATTTTG
* *
83429492 CAAA-CTAATGGTATTTTTGTAATTTTTG
1 CAAATC-AAGGGTA-TTTCGTAA-TTTTG
* *
83429520 -AAAGTC-TGGGTATTTCTGTAATTTTA
1 CAAA-TCAAGGGTATTTC-GTAATTTTG
* * *
83429546 TAAATTAGGGGTATTTCTGTAATTTT-
1 CAAATCAAGGGTATTTC-GTAATTTTG
* * *
83429572 CTAAGTCAACGGTATTTCGATAATTTTC
1 C-AAATCAAGGGTATTTCG-TAATTTTG
* *
83429600 CAAATCAAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* * **
83429627 CAAATCAAAGGTATTTCAATAATTTCA
1 CAAATCAAGGGTATTTC-GTAATTTTG
* * * *
83429654 CAAATAAAGGCTATTTTGGTAA-TTTA
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* *
83429680 CAAA-CTAGGGGTATTTTGGTAATTTTG
1 CAAATC-AAGGGTA-TTTCGTAATTTTG
* * * *
83429707 CTAATCGATGGTATTTTTGTAATTTTG
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* * *
83429734 TAAACCATGGGTA-TTCAGTAATTTTG
1 CAAATCAAGGGTATTTC-GTAATTTTG
* *
83429760 TAAACCAAGGGTATTTCAGTAATT
1 CAAATCAAGGGTATTTC-GTAATT
83429784 CTACCCTATA
Statistics
Matches: 229, Mismatches: 44, Indels: 38
0.74 0.14 0.12
Matches are distributed among these distances:
25 2 0.01
26 55 0.24
27 153 0.67
28 18 0.08
29 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.41
Consensus pattern (26 bp):
CAAATCAAGGGTATTTCGTAATTTTG
Found at i:83429531 original size:54 final size:53
Alignment explanation
Indices: 83429470--83429732 Score: 185
Period size: 54 Copynumber: 4.9 Consensus size: 53
83429460 ATCTACAAAC
* *
83429470 CAAGGGTATTTCGATAATTTTGCAAACTAATGGTATTTTTGTAATTTT-TGAAAGT
1 CAAGGGTATTTCGATAATTTTACAAA-TAAGGGTATTTTTGTAATTTTCT--AAGT
* * * *
83429525 C-TGGGTATTTCTG-TAATTTTATAAATTAGGGGTATTTCTGTAATTTTCTAAGT
1 CAAGGGTATTTC-GATAATTTTACAAA-TAAGGGTATTTTTGTAATTTTCTAAGT
* * * *
83429578 CAACGGTATTTCGATAATTTTCCAAATCAAGGGTATTTTGGTAATTTTAC-AAAT
1 CAAGGGTATTTCGATAATTTTACAAAT-AAGGGTATTTTTGTAATTTT-CTAAGT
* * * * * * * *
83429632 CAAAGGTATTTCAATAATTTCACAAATAAAGGCTATTTTGGTAATTTACAAACT
1 CAAGGGTATTTCGATAATTTTACAAAT-AAGGGTATTTTTGTAATTTTCTAAGT
* * * * * * *
83429686 -AGGGGTATTTTGGTAATTTTGCTAATCGATGGTATTTTTGTAATTTT
1 CAAGGGTATTTCGATAATTTTACAAAT-AAGGGTATTTTTGTAATTTT
83429733 GTAAACCATG
Statistics
Matches: 164, Mismatches: 37, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
53 41 0.25
54 119 0.73
55 4 0.02
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43
Consensus pattern (53 bp):
CAAGGGTATTTCGATAATTTTACAAATAAGGGTATTTTTGTAATTTTCTAAGT
Found at i:83429650 original size:81 final size:82
Alignment explanation
Indices: 83429443--83429705 Score: 209
Period size: 81 Copynumber: 3.3 Consensus size: 82
83429433 TTTCACCCTA
* * * * * *
83429443 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTGCAAACTAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAATAATTTTGCAAACTAACGGTATTT
* **
83429508 TTGTAATTTTTGAAAGT
66 TCGTAATTTTCCAAAGT
* * * * ** * *
83429525 C-TGGGTATTTCT-GTAATTTTATAAATTAGGGGTATTTCTGTAATTTT-CTAAGTCAACGGTA-
1 CAAGGGTATTT-TGGTAATTTTACAAATCAAGGGTATTTCAATAATTTTGCAAACT-AACGGTAT
83429586 TTTCGATAATTTTCCAAA-T
64 TTTCG-TAATTTTCCAAAGT
* ** *
83429605 CAAGGGTATTTTGGTAATTTTACAAATCAAAGGTATTTCAATAATTTCACAAA-TAAAGGCTATT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAATAATTTTGCAAACTAACGG-TATT
* * *
83429669 TTGGTAA-TTTACAAACT
65 TTCGTAATTTTCCAAAGT
*
83429686 -AGGGGTATTTTGGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
83429706 GCTAATCGAT
Statistics
Matches: 143, Mismatches: 29, Indels: 20
0.74 0.15 0.10
Matches are distributed among these distances:
80 41 0.29
81 93 0.65
82 9 0.06
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (82 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAATAATTTTGCAAACTAACGGTATTT
TCGTAATTTTCCAAAGT
Found at i:83429754 original size:26 final size:27
Alignment explanation
Indices: 83429716--83429783 Score: 102
Period size: 26 Copynumber: 2.6 Consensus size: 27
83429706 GCTAATCGAT
** *
83429716 GGTATTTTTGTAATTTTGTAAACCATG
1 GGTATTTCAGTAATTTTGTAAACCAAG
83429743 GGTA-TTCAGTAATTTTGTAAACCAAG
1 GGTATTTCAGTAATTTTGTAAACCAAG
83429769 GGTATTTCAGTAATT
1 GGTATTTCAGTAATT
83429784 CTACCCTATA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 23 0.62
27 14 0.38
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.43
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAACCAAG
Found at i:83429802 original size:27 final size:27
Alignment explanation
Indices: 83429772--83429845 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
83429762 AACCAAGGGT
* * *
83429772 ATTTCAGTAATTCTACCCTATAGGTGC
1 ATTTTAGTAATTCTACCCTAAAGGGGC
*
83429799 ATTTTAGTAATTCTACCCTAAAGGGGT
1 ATTTTAGTAATTCTACCCTAAAGGGGC
* *
83429826 ATTTTAGTAATACTAGCCTA
1 ATTTTAGTAATTCTACCCTA
83429846 CAGATATGAG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTAGTAATTCTACCCTAAAGGGGC
Found at i:83432770 original size:22 final size:20
Alignment explanation
Indices: 83432745--83432800 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
83432735 TTTGGCACAC
83432745 AGCCATAATTAGGTTGGCATA
1 AGCCATAATTAGGTTGGCA-A
83432766 GAGCCAT-ATGTAGGTTGGTGCAA
1 -AGCCATAAT-TAGGTT-G-GCAA
83432789 AGCCATAATTAG
1 AGCCATAATTAG
83432801 ACTAATTGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
21 2 0.07
22 21 0.70
23 4 0.13
24 3 0.10
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (20 bp):
AGCCATAATTAGGTTGGCAA
Found at i:83432992 original size:41 final size:41
Alignment explanation
Indices: 83432932--83433093 Score: 279
Period size: 41 Copynumber: 4.0 Consensus size: 41
83432922 AAAGCCACCG
*
83432932 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCG
1 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCA
*
83432973 GTGGATCCACGATCATCAAGCAACCATGCGATCCTCAATCA
1 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCA
83433014 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCA
1 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCA
* * *
83433055 GTGGATCCACGTTCGTCAAGCAACCATACGATCATCAAT
1 GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
83433094 TTCTTCCTTC
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 115 1.00
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (41 bp):
GTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAATCA
Found at i:83433010 original size:19 final size:19
Alignment explanation
Indices: 83432982--83433051 Score: 54
Period size: 19 Copynumber: 3.5 Consensus size: 19
83432972 GGTGGATCCA
*
83432982 CGATCATCAAGCAACCATG
1 CGATCCTCAAGCAACCATG
*
83433001 CGATCCTCAATCAGTGGATCCA--
1 CGATCCTCAAGCA----A-CCATG
*
83433023 CGATCGTCAAGCAACCATG
1 CGATCCTCAAGCAACCATG
83433042 CGATCCTCAA
1 CGATCCTCAA
83433052 TCAGTGGATC
Statistics
Matches: 39, Mismatches: 5, Indels: 14
0.67 0.09 0.24
Matches are distributed among these distances:
17 3 0.08
18 1 0.03
19 20 0.51
22 11 0.28
23 1 0.03
24 3 0.08
ACGTcount: A:0.31, C:0.33, G:0.17, T:0.19
Consensus pattern (19 bp):
CGATCCTCAAGCAACCATG
Found at i:83433467 original size:26 final size:27
Alignment explanation
Indices: 83433311--83433617 Score: 214
Period size: 27 Copynumber: 11.4 Consensus size: 27
83433301 TTTCACCTTA
* * *
83433311 CAAGGGTATTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
83433338 CAAGGGTATTTCGATAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
83433365 CAATGGTATTTTTGTAATTTTTGAAAGT
1 CAAGGGTATTTTGGTAATTTTACAAA-T
* *
83433393 CTAGGGTAATTTT-GTAATTTTATAAAT
1 CAAGGGT-ATTTTGGTAATTTTACAAAT
* * ** *
83433420 CAGGGGTCTTTTTATAAATTTT-CGAAT
1 CAAGGGTATTTTGGT-AATTTTACAAAT
* * * *
83433447 GAAAGGTATTTCGGTAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
83433474 CAGGGGTATTTTGGTAA-TTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
83433500 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
83433526 CTAGAGGTATTTTGGTAATTTTGCTAAT
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
83433554 CGAGGGTATTTTGGTAATTTTGA-AAA-
1 CAAGGGTATTTTGGTAATTTT-ACAAAT
** ** *
83433580 CTAAGGGTA-TTCAGTAATTTTGTAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
83433607 CAAGGGTATTT
1 CAAGGGTATTT
83433618 CAGTAATTCT
Statistics
Matches: 220, Mismatches: 47, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
26 57 0.26
27 133 0.60
28 25 0.11
29 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:83433543 original size:80 final size:79
Alignment explanation
Indices: 83433314--83433590 Score: 242
Period size: 80 Copynumber: 3.4 Consensus size: 79
83433304 CACCTTACAA
* * * * *
83433314 GGGTATTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTGCAAACCAATGGTATTTTTG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTT-CAAACTAA-GGTATTTTGG
**
83433379 TAATTTTTGAAAGTCTA-
64 TAATTTTCCAAA-TC-AG
* * * * * * *
83433396 GGGTAATTTT-GTAATTTTATAAATCAGGGGTCTTTTTATAAATTTTCGAA-TGAAAGGTATTTC
1 GGGT-ATTTTGGTAATTTTACAAACCAAGGGTATTTTGAT-AATTTTCAAACT--AAGGTATTTT
83433459 GGTAATTTTCCAAATCAG
62 GGTAATTTTCCAAATCAG
*
83433477 GGGTATTTTGGTAA-TTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTT-CAAACTA-AGGTATTTTGG
* *
83433541 TAATTTTGCTAATC-G
64 TAATTTTCCAAATCAG
*
83433556 AGGGTATTTTGGTAATTTTGA-AAACTAAGGGTATT
1 -GGGTATTTTGGTAATTTT-ACAAACCAAGGGTATT
83433591 CAGTAATTTT
Statistics
Matches: 158, Mismatches: 25, Indels: 25
0.76 0.12 0.12
Matches are distributed among these distances:
79 8 0.05
80 63 0.40
81 27 0.17
82 47 0.30
83 13 0.08
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (79 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGATAATTTTCAAACTAAGGTATTTTGGTA
ATTTTCCAAATCAG
Found at i:83433624 original size:80 final size:80
Alignment explanation
Indices: 83433314--83433625 Score: 205
Period size: 80 Copynumber: 3.9 Consensus size: 80
83433304 CACCTTACAA
* * * *
83433314 GGGTATTTTGGTAAATCTACAAACCAAGGGTATTTC-GATAATTTTGCAAACCAA-TGGTATTTT
1 GGGTATTTTGGT-AATTTACAAACCAAGGGTATTTCAG-TAATTTTACAAA-CAAGAGGTATTTC
* **
83433377 TGTAATTTTTGAAAGTCTA-
63 GGTAATTTTCCAAA-TC-AG
* * * * * **
83433396 GGGTAATTTT-GTAATTTTATAAATCAGGGGTCTTTTTA-TAAATTTT-CGAATGAA-AGGTATT
1 GGGT-ATTTTGGTAA-TTTACAAACCAAGGGT-ATTTCAGT-AATTTTAC-AAACAAGAGGTATT
83433457 TCGGTAATTTTCCAAATCAG
61 TCGGTAATTTTCCAAATCAG
** * *
83433477 GGGTATTTTGGTAATTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGAGGTATTTTGGT
1 GGGTATTTTGGTAATTTACAAACCAAGGGTATTTCAGTAATTTTACAAACAAGAGGTATTTCGGT
* *
83433542 AATTTTGCTAATC-G
66 AATTTTCCAAATCAG
* **
83433556 AGGGTATTTTGGTAATTTTGA-AAACTAAGGGTA-TTCAGTAATTTTGTAAACCAAG-GGTATTT
1 -GGGTATTTTGGTAA-TTT-ACAAACCAAGGGTATTTCAGTAATTTTACAAA-CAAGAGGTATTT
*
83433618 CAGTAATT
62 CGGTAATT
83433626 CTACCCTATG
Statistics
Matches: 183, Mismatches: 32, Indels: 32
0.74 0.13 0.13
Matches are distributed among these distances:
79 14 0.08
80 83 0.45
81 29 0.16
82 41 0.22
83 16 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTACAAACCAAGGGTATTTCAGTAATTTTACAAACAAGAGGTATTTCGGT
AATTTTCCAAATCAG
Found at i:83433648 original size:25 final size:26
Alignment explanation
Indices: 83433609--83433685 Score: 93
Period size: 25 Copynumber: 3.0 Consensus size: 26
83433599 TTGTAAACCA
*
83433609 AGGGTATTTCAGTAATTCTACCCTAT
1 AGGGCATTTCAGTAATTCTACCCTAT
*
83433635 -GGGCATTTCAGTAATTCTACTCTAT
1 AGGGCATTTCAGTAATTCTACCCTAT
* * *
83433660 AAGGGTATTTCAGTAATACTAGCCTA
1 -AGGGCATTTCAGTAATTCTACCCTA
83433686 CAGATATGAG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
25 23 0.53
27 20 0.47
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (26 bp):
AGGGCATTTCAGTAATTCTACCCTAT
Found at i:83434036 original size:70 final size:70
Alignment explanation
Indices: 83433923--83434061 Score: 242
Period size: 70 Copynumber: 2.0 Consensus size: 70
83433913 TGGCATTTGC
* * *
83433923 CGTTCTACAGATAGAGTAGTACGAAAGACACAGCTGTTTATGAGAACGAGCCGAAGTCCACGATC
1 CGTTCTACAGATACAGTAGTACGAAACACACACCTGTTTATGAGAACGAGCCGAAGTCCACGATC
83433988 ACTAT
66 ACTAT
*
83433993 CGTTCTACAGATACAGTAGTACGAAACACACACCTGTTTATGAGAACGAGCCGAAGTCCATGATC
1 CGTTCTACAGATACAGTAGTACGAAACACACACCTGTTTATGAGAACGAGCCGAAGTCCACGATC
83434058 ACTA
66 ACTA
83434062 ACCTTGGTAC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 65 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.22
Consensus pattern (70 bp):
CGTTCTACAGATACAGTAGTACGAAACACACACCTGTTTATGAGAACGAGCCGAAGTCCACGATC
ACTAT
Found at i:83437606 original size:28 final size:28
Alignment explanation
Indices: 83437543--83437724 Score: 321
Period size: 28 Copynumber: 6.5 Consensus size: 28
83437533 ATATTAAGTC
* *
83437543 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
83437570 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
83437598 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
83437626 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
83437654 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
83437682 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
83437710 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83437725 GTACAATTTA
Statistics
Matches: 151, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 22 0.15
28 129 0.85
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:83445946 original size:28 final size:28
Alignment explanation
Indices: 83445883--83446036 Score: 274
Period size: 28 Copynumber: 5.5 Consensus size: 28
83445873 ATATTAAGTC
* *
83445883 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
83445910 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
83445938 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
83445966 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
83445994 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
83446022 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83446037 GTACAATTTA
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 22 0.18
28 102 0.82
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:83460053 original size:39 final size:40
Alignment explanation
Indices: 83459936--83460117 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
83459926 GCTACTCGTT
*
83459936 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
83459976 AAAATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
83460016 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
83460055 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
83460096 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
83460118 AGACATCATT
Statistics
Matches: 117, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 70 0.60
41 14 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:83468193 original size:40 final size:40
Alignment explanation
Indices: 83468009--83468193 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
83467999 GCTACTCGTT
* *
83468009 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * * * *
83468049 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
83468089 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
83468128 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
83468169 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
83468194 CATCATTCGA
Statistics
Matches: 120, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 76 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:83472802 original size:30 final size:29
Alignment explanation
Indices: 83472735--83472901 Score: 133
Period size: 30 Copynumber: 5.7 Consensus size: 29
83472725 AGCAAAAGCT
* *
83472735 ATCCCTATTCATATTTGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTCGTCACC
83472764 AT-CCTTTTCATTATTCGATGGTCGTCACC
1 ATCCCTTTTCA-TATTCGATGGTCGTCACC
* * * * *
83472793 ATCCCTTTTCAAAATTTGATAGTCG-AAGCT
1 ATCCCTTTTC-ATATTCGATGGTCGTCA-CC
* * *
83472823 ATCCCTTTTCATGGTTCGATAGTCG-AAGCC
1 ATCCCTTTTCAT-ATTCGATGGTCGTCA-CC
* *
83472853 ATCCCTTTCCATAGTTCGATGGTTGTCACC
1 ATCCCTTTTCATA-TTCGATGGTCGTCACC
* *
83472883 ATCCCTTTTAATAATCGAT
1 ATCCCTTTTCATATTCGAT
83472902 AGCCAAAGTT
Statistics
Matches: 112, Mismatches: 19, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
28 7 0.06
29 28 0.25
30 75 0.67
31 2 0.02
ACGTcount: A:0.22, C:0.26, G:0.14, T:0.38
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATGGTCGTCACC
Found at i:83472915 original size:29 final size:29
Alignment explanation
Indices: 83472883--83472949 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
83472873 GGTTGTCACC
* *
83472883 ATCCCTTTTAATAATCGATAGCCAAAGTT
1 ATCCCTTTTAATAATCGATAACCAAAGCT
** * *
83472912 ATCCCTTTTTGTATTCGATAACCGAAGCT
1 ATCCCTTTTAATAATCGATAACCAAAGCT
83472941 ATCCCTTTT
1 ATCCCTTTT
83472950 CATTTGTCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTAATAATCGATAACCAAAGCT
Found at i:83474452 original size:27 final size:27
Alignment explanation
Indices: 83474422--83474735 Score: 412
Period size: 27 Copynumber: 11.6 Consensus size: 27
83474412 TTAGTTTACC
83474422 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
83474449 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83474476 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
83474503 AAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83474530 AAATTACCAAAATACCCATGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** * *
83474557 AAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
83474584 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
83474611 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83474638 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83474665 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
83474692 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
83474719 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
83474736 TCGACCTGTA
Statistics
Matches: 250, Mismatches: 37, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 250 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:83474735 original size:54 final size:54
Alignment explanation
Indices: 83474422--83474807 Score: 409
Period size: 54 Copynumber: 7.1 Consensus size: 54
83474412 TTAGTTTACC
* * *
83474422 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
83474476 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
83474530 AAATTACCAAAATACCCATGGTTTGTAAAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
83474584 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
83474638 AAATTATCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCTTGGTTTATA
* ** * *** *
83474692 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
*** * * * *
83474746 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
83474800 GAATTACC
1 AAATTACC
83474808 GTTTTACCCT
Statistics
Matches: 285, Mismatches: 44, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
53 4 0.01
54 280 0.98
55 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:83474746 original size:81 final size:80
Alignment explanation
Indices: 83474422--83474789 Score: 375
Period size: 81 Copynumber: 4.5 Consensus size: 80
83474412 TTAGTTTACC
* * ** * * *
83474422 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCTTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
*
83474487 ATACCCCTGGTTTGTA
66 ATACCCC-GATTTGTA
** * ** *
83474503 AAATTACCAAAATACCTTTGGTTTACAAAATTACCAAAATACCCATGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
** *
83474568 ATACCATTTG-TTTATA
66 ATACC--CCGATTTGTA
83474584 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTA-TCA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACT-A
*
83474647 AAATACCCCTAGTTTGTA
64 AAATACCCCGA-TTTGTA
* * * *
83474665 AAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
**
83474730 ATACCCTCGACCTGTA
66 ATACCC-CGATTTGTA
*** * *
83474746 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCC
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCAAAATACCC
83474790 TTGATTTACA
Statistics
Matches: 241, Mismatches: 36, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
80 5 0.02
81 231 0.96
82 5 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
ATACCCCGATTTGTA
Found at i:83474790 original size:27 final size:26
Alignment explanation
Indices: 83474422--83474789 Score: 297
Period size: 27 Copynumber: 13.7 Consensus size: 26
83474412 TTAGTTTACC
*
83474422 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* ** * *
83474449 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACC-CCGATTTGTA
* *
83474476 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
** * **
83474503 AAATTACCAAAATACCTTTGGTTTACA
1 AAATTACCAAAATACC-CCGATTTGTA
* *
83474530 AAATTACCAAAATACCCATGGTTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
* ** *
83474557 AAATTACTAAAATACCATTTG-TTTATA
1 AAATTACCAAAATACC--CCGATTTGTA
*
83474584 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
83474611 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
83474638 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
83474665 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
*
83474692 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
** **
83474719 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
83474746 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*
83474773 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
83474790 TTGATTTACA
Statistics
Matches: 285, Mismatches: 44, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
27 281 0.99
28 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:83474815 original size:27 final size:26
Alignment explanation
Indices: 83474785--83474855 Score: 115
Period size: 27 Copynumber: 2.7 Consensus size: 26
83474775 ATTACCAAAG
*
83474785 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACA-AATTACCGTTT
83474812 TACCCTCGATTTACAAATTTACCGTTT
1 TACCCTCGATTTACAAA-TTACCGTTT
83474839 TACCCTCGATTTACAAA
1 TACCCTCGATTTACAAA
83474856 ATTATCGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
26 2 0.05
27 40 0.95
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (26 bp):
TACCCTCGATTTACAAATTACCGTTT
Found at i:83474869 original size:27 final size:26
Alignment explanation
Indices: 83474719--83474871 Score: 90
Period size: 27 Copynumber: 5.7 Consensus size: 26
83474709 CTGATTTGTG
** **
83474719 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTAC-GAAATACCCTCGATTTACA
* * **
83474746 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTA-CGAAATACCCTCGATTTACA
* *
83474773 AAATTACCAAAGTACCCTTGATTTACA
1 AAATTACGAAA-TACCCTCGATTTACA
* ***
83474800 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTA-CGAAATACCCTCGATTTACA
* ***
83474827 AATTTACCGTTTTACCCTCGATTTACA
1 AAATTA-CGAAATACCCTCGATTTACA
83474854 AAATTATCGAAATACCCT
1 AAATTA-CGAAATACCCT
83474872 TGTAGGGTAG
Statistics
Matches: 102, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
26 3 0.03
27 98 0.96
28 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.09, T:0.33
Consensus pattern (26 bp):
AAATTACGAAATACCCTCGATTTACA
Found at i:83474870 original size:54 final size:54
Alignment explanation
Indices: 83474498--83474871 Score: 156
Period size: 54 Copynumber: 6.9 Consensus size: 54
83474488 TACCCCTGGT
* * * * * * **
83474498 TTGTAAAATTACCAAAATACCTTTGGTTTACAAAATTACCAAAATACCCAT-GGT
1 TTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTATCGAAATACCC-TCGAC
* * * * * * * * *
83474552 TTGTAAAATTACTAAAATACCATTTG-TTTATAAAATTACCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAGTACC-CTCGATTTACAAAATTATCGAAATACCCTCGA-C
* * ** * * *
83474606 TTGTAAAATTACCAAAATACCC-CTGGTTTGTAAAATTATCAAAATACCC-CTAGT
1 TTGTAAAATTACCAAAGTACCCTC-GATTTACAAAATTATCGAAATACCCTCGA-C
* *** * * *
83474660 TTGTAAAATTACCAAAATACCC-CTGATTTGTGAAATTACCAAAATACCC-CTGAT
1 TTGTAAAATTACCAAAGTACCCTC-GATTTACAAAATTATCGAAATACCCTC-GAC
* * ** ** *
83474714 TTGTGAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCCTCGAC
1 TTGTAAAATTAC-CAAAGTACCCTCGATTTACAAAATTATCGAAATACCCTCGAC
* * * ***
83474768 TTGTAAAATTACCAAAGTACCCTTGATTTACAGAATTACCGTTTTACCCTCGA-
1 TTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTATCGAAATACCCTCGAC
****
83474821 TT-TACAAATTTACCGTTTTACCCTCGATTTACAAAATTATCGAAATACCCT
1 TTGTA-AAA-TTACCAAAGTACCCTCGATTTACAAAATTATCGAAATACCCT
83474872 TGTAGGGTAG
Statistics
Matches: 263, Mismatches: 45, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.01
53 9 0.03
54 242 0.92
55 10 0.04
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (54 bp):
TTGTAAAATTACCAAAGTACCCTCGATTTACAAAATTATCGAAATACCCTCGAC
Found at i:83474891 original size:27 final size:27
Alignment explanation
Indices: 83474855--83475157 Score: 392
Period size: 27 Copynumber: 11.3 Consensus size: 27
83474845 CGATTTACAA
* *
83474855 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83474882 AAATACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83474909 AATTACTGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83474936 AATTAGCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
83474963 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83474990 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
83475017 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
83475044 AATTACTGAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
83475071 AATTATCGCAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
83475098 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
83475125 AATTACTGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
83475151 AATTACC
1 AATTACC
83475158 ATTTTGCCCC
Statistics
Matches: 238, Mismatches: 38, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
26 15 0.06
27 223 0.94
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:83475636 original size:22 final size:22
Alignment explanation
Indices: 83475584--83475648 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
83475574 TTAAAGCTTT
* * *
83475584 CTGATTATGGCTTTGTGTCAAG
1 CTGATTATGGCTCTGTGCCAAC
*
83475606 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
83475628 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
83475649 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.25, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:83475870 original size:27 final size:27
Alignment explanation
Indices: 83475813--83475906 Score: 154
Period size: 27 Copynumber: 3.5 Consensus size: 27
83475803 TAAGTGGCTT
*
83475813 TGCCACATTATCTGT-TCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
*
83475839 TGCCACAATATCTGTATCTAGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
83475866 TGCCACAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGACTC
*
83475893 TGTCACAATATCTG
1 TGCCACAATATCTG
83475907 ATAATTGAGC
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
26 14 0.22
27 49 0.78
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGACTC
Found at i:83476060 original size:6 final size:6
Alignment explanation
Indices: 83476046--83476178 Score: 94
Period size: 6 Copynumber: 21.7 Consensus size: 6
83476036 TTCTGTTACT
* * * *
83476046 TGATAC TGATTC TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTT
1 TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC
* * * *
83476095 TGATTC TG-TTACC TGATAC TGATTC TGATTT TGATTC TG-TTACC TAATAC
1 TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGATT--C TGATTC
*
83476145 TGATTC TGATTC TGATTT TGATTC T-AGTTC TGAT
1 TGATTC TGATTC TGATTC TGATTC TGA-TTC TGAT
83476179 AATGTTTCTT
Statistics
Matches: 99, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
5 7 0.07
6 80 0.81
7 9 0.09
8 3 0.03
ACGTcount: A:0.20, C:0.15, G:0.16, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:83476073 original size:31 final size:31
Alignment explanation
Indices: 83476022--83476161 Score: 235
Period size: 31 Copynumber: 4.5 Consensus size: 31
83476012 TTGCATTCAC
* *
83476022 ATTCTGATTTTTTATTCTGTTACTTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
83476054 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
83476085 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
83476116 ATTCTGATTTTGATTCTGTTACCTAATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
83476147 ATTCTGATTCTGATT
1 ATTCTGATTTTGATT
83476162 TTGATTCTAG
Statistics
Matches: 104, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
31 97 0.93
32 7 0.07
ACGTcount: A:0.20, C:0.15, G:0.14, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:83477449 original size:29 final size:29
Alignment explanation
Indices: 83477416--83477859 Score: 274
Period size: 29 Copynumber: 15.5 Consensus size: 29
83477406 AACATGCCAG
* * * *
83477416 AAAAGAAAAGCCTTTATGGTGAACGTATG
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
*
83477445 AAAAG-AAAGCCTTTATGGCGAACCTCTT
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
* * *
83477473 AAAAGGAAAGCCCTTATGGCGAACCTAT-
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
* ** * *
83477501 AAGAGGGAAGCCTTTCTGGTGAACCTCTA
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
* ***
83477530 AAAAGAAAAGCCTTTGTGATAAACCTCTA
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
** * * *
83477559 AAAAGAAAATACTTTTTGGCGAACCTATG
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
* * *
83477588 AAAAGAAAAGACTTTGTGGGGAACCTCTA
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
* *
83477617 AAAAGAAAAGCCTTTGTGGCAAACCTCTA
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
* * * ** * *
83477646 TAAATGGAAAGCCTTTGTGGAAAATCTTTA
1 -AAAAGAAAAGCCTTTATGGCGAACCTCTA
* * *
83477676 CAAAAG-AAAGCCTATATGTCAAACCTCT-
1 -AAAAGAAAAGCCTTTATGGCGAACCTCTA
* * * * **
83477704 GAAAGGAAAGCCTATGTGGAAAACCTCT-
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
* ** *
83477732 AAAAGGAAAGATTTTTTGGCGAA-C-CTA
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
* * * *
83477759 CAAAAGGAAAGCCTTTTTGGTGAACCTCTG
1 -AAAAGAAAAGCCTTTATGGCGAACCTCTA
* * *
83477789 AAAAG-AAAGCCTTTGTGGCAAATCTCTA
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
* * * *
83477817 CAAAGGAAAGCCTATATGGCTAACCTCTA
1 AAAAGAAAAGCCTTTATGGCGAACCTCTA
*
83477846 AAAATAAAAGCCTT
1 AAAAGAAAAGCCTT
83477860 GGTGGCAATT
Statistics
Matches: 330, Mismatches: 76, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.01
27 5 0.02
28 123 0.37
29 170 0.52
30 30 0.09
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.24
Consensus pattern (29 bp):
AAAAGAAAAGCCTTTATGGCGAACCTCTA
Found at i:83477843 original size:57 final size:57
Alignment explanation
Indices: 83477445--83477867 Score: 266
Period size: 57 Copynumber: 7.4 Consensus size: 57
83477435 TGAACGTATG
* * * ** *
83477445 AAAAGAAAGCCTTTATGGCGAACCTCTTA-AAAGGAAAGCCCT-TATGGCGAACCTATA
1 AAAAGAAAGCCTTTGTGGCAAACCTC-TACAAAGGAAAG-CCTATGTGGAAAACCTCTA
* * * * ** * * *
83477502 AGAGGGAAGCCTTTCTGGTGAACCTCTAAAAAGAAAAGCCTTTGT-GATAAACCTCTA
1 AAAAGAAAGCCTTTGTGGCAAACCTCTACAAAGGAAAGCCTATGTGGA-AAACCTCTA
** * * * * * * **
83477559 AAAAGAAAATACTTTTTGGCGAACCTATGA-AAAGAAAAGACTTTGTGGGGAACCTCTA
1 AAAAG-AAAGCCTTTGTGGCAAACCTCT-ACAAAGGAAAGCCTATGTGGAAAACCTCTA
* * * *
83477617 AAAAGAAAAGCCTTTGTGGCAAACCTCTATAAATGGAAAGCCTTTGTGGAAAATCTTTA
1 AAAAG-AAAGCCTTTGTGGCAAACCTCTACAAA-GGAAAGCCTATGTGGAAAACCTCTA
* * * *
83477676 CAAAAGAAAGCCTATATGTCAAACCTCT-GAAAGGAAAGCCTATGTGGAAAACCTCTA
1 -AAAAGAAAGCCTTTGTGGCAAACCTCTACAAAGGAAAGCCTATGTGGAAAACCTCTA
* ** * * * * ** *
83477733 AAAGGAAAGATTTTTTGGCGAA-C-CTACAAAAGGAAAGCCTTTTTGGTGAACCTCTG
1 AAAAGAAAGCCTTTGTGGCAAACCTCTAC-AAAGGAAAGCCTATGTGGAAAACCTCTA
* * **
83477789 AAAAGAAAGCCTTTGTGGCAAATCTCTACAAAGGAAAGCCTATATGGCTAACCTCTA
1 AAAAGAAAGCCTTTGTGGCAAACCTCTACAAAGGAAAGCCTATGTGGAAAACCTCTA
* *
83477846 AAAATAAAAGCCTTGGTGGCAA
1 AAAA-GAAAGCCTTTGTGGCAA
83477868 TTTTAAAAAG
Statistics
Matches: 288, Mismatches: 64, Indels: 27
0.76 0.17 0.07
Matches are distributed among these distances:
54 2 0.01
55 1 0.00
56 61 0.21
57 92 0.32
58 87 0.30
59 40 0.14
60 5 0.02
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (57 bp):
AAAAGAAAGCCTTTGTGGCAAACCTCTACAAAGGAAAGCCTATGTGGAAAACCTCTA
Found at i:83478466 original size:13 final size:13
Alignment explanation
Indices: 83478448--83478473 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83478438 CATGAGAGTA
83478448 CTTTTAGGAAACC
1 CTTTTAGGAAACC
83478461 CTTTTAGGAAACC
1 CTTTTAGGAAACC
83478474 TTATCAAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
CTTTTAGGAAACC
Found at i:83484911 original size:28 final size:28
Alignment explanation
Indices: 83484880--83484993 Score: 95
Period size: 28 Copynumber: 4.1 Consensus size: 28
83484870 GCACTTAACA
*
83484880 TGCGAAGTATCGGGGATGGCACTTAGTG
1 TGCGAAGTATCGAGGATGGCACTTAGTG
* * * **
83484908 TGCGATA-CATCCAGAATGGCACTTACAG
1 TGCGA-AGTATCGAGGATGGCACTTAGTG
* *
83484936 TGCGAAGTAACGAGGATGACACTTAGTG
1 TGCGAAGTATCGAGGATGGCACTTAGTG
** * * *
83484964 TGCGAAACATCCAGAACGGCACTTAGTG
1 TGCGAAGTATCGAGGATGGCACTTAGTG
83484992 TG
1 TG
83484994 TAAGGTATCA
Statistics
Matches: 64, Mismatches: 20, Indels: 4
0.73 0.23 0.05
Matches are distributed among these distances:
27 1 0.02
28 62 0.97
29 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (28 bp):
TGCGAAGTATCGAGGATGGCACTTAGTG
Found at i:83484959 original size:56 final size:55
Alignment explanation
Indices: 83484868--83484988 Score: 179
Period size: 56 Copynumber: 2.2 Consensus size: 55
83484858 TAATTATATG
* * * *
83484868 TGGCACTTAACATGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAA
1 TGGCACTT-ACATGCGAAGTAACGAGGATGACACTTAGTGTGCGAAACATCCAGAA
83484924 TGGCACTTACAGTGCGAAGTAACGAGGATGACACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTACA-TGCGAAGTAACGAGGATGACACTTAGTGTGCGAAACATCCAGAA
*
83484980 CGGCACTTA
1 TGGCACTTA
83484989 GTGTGTAAGG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
55 3 0.05
56 56 0.95
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (55 bp):
TGGCACTTACATGCGAAGTAACGAGGATGACACTTAGTGTGCGAAACATCCAGAA
Found at i:83485138 original size:32 final size:32
Alignment explanation
Indices: 83485072--83485138 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
83485062 TGAGTATGAG
* * * *
83485072 ATTGGTACGATATGGTATAGGTATCTACGGAA
1 ATTGGTACAATATAGTACAGGTATCTACGAAA
* *
83485104 ATTGGTACAATATAGTACATGTATGTACGAAA
1 ATTGGTACAATATAGTACAGGTATCTACGAAA
83485136 ATT
1 ATT
83485139 CAATTGAGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.36, C:0.09, G:0.22, T:0.33
Consensus pattern (32 bp):
ATTGGTACAATATAGTACAGGTATCTACGAAA
Found at i:83492421 original size:40 final size:40
Alignment explanation
Indices: 83492327--83492551 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
83492317 TATTCGAATG
*
83492327 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
83492368 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
83492408 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
83492448 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
83492488 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
83492528 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
83492552 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:83492507 original size:80 final size:80
Alignment explanation
Indices: 83492327--83492587 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
83492317 TATTCGAATG
* * * *
83492327 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
83492392 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
83492408 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
83492473 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
83492488 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
83492553 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
83492567 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
83492588 ATTTCTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:83492541 original size:120 final size:120
Alignment explanation
Indices: 83492327--83492587 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
83492317 TATTCGAATG
* * *
83492327 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
83492392 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
83492448 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
83492511 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
83492567 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
83492588 ATTTCTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:83498696 original size:40 final size:40
Alignment explanation
Indices: 83498602--83498826 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 40
83498592 TATTCGAATG
* *
83498602 ATATCCAGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
83498643 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
83498683 ATATCCGGGCTAAGA-CCAGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCC-GAAGGCATTTGTGCTAGTGACT
* * * *
83498723 ATATTCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
83498763 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
83498803 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
83498827 CTTGTGCAAG
Statistics
Matches: 154, Mismatches: 23, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.02
40 120 0.78
41 30 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:83498772 original size:80 final size:80
Alignment explanation
Indices: 83498602--83498862 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
83498592 TATTCGAATG
* * * * *
83498602 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
83498667 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * * *
83498683 ATATCCGGGCTAAGACCAGAAGGCATTTGTGCTAGCGATTATATTCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
83498748 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
83498763 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
83498828 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
83498842 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
83498863 ATTTCTTGAG
Statistics
Matches: 150, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 92 0.61
81 30 0.20
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:83501001 original size:50 final size:46
Alignment explanation
Indices: 83500930--83501051 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 46
83500920 TGTCTTCGAC
* * *
83500930 ATGGACTTACATGGATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC----ATATATCTAAT
* * *
83500980 ATGGGCTTACATGGCTCATTCCTATCTCCAAAGCCATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
*
83501026 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
83501052 CTGCCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.52
50 30 0.48
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
Found at i:83501036 original size:46 final size:47
Alignment explanation
Indices: 83500930--83501045 Score: 144
Period size: 50 Copynumber: 2.4 Consensus size: 47
83500920 TGTCTTCGAC
* * * *
83500930 ATGGACTTACATGGATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTATCTCCAAAGCC--A-ATATATCTAAT
* *
83500980 ATGGGCTTACATGGCTCATTCCTATCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTATCTCCAAAGCCAATATATCTAAT
83501026 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
83501046 TCTGTCCTGC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 29 0.49
50 30 0.51
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTATCTCCAAAGCCAATATATCTAAT
Found at i:83504569 original size:27 final size:28
Alignment explanation
Indices: 83504527--83504599 Score: 94
Period size: 27 Copynumber: 2.6 Consensus size: 28
83504517 AACATGCAAG
* *
83504527 AAAAGAAAAGCATTTGTGATGAACCTCT
1 AAAAGAAAAGCCTTTGTGATGAACATCT
* *
83504555 -AAAGAAAACCCTTTGTGGTGAACATCT
1 AAAAGAAAAGCCTTTGTGATGAACATCT
83504582 GAAAAGAAAAGCCTTTGT
1 -AAAAGAAAAGCCTTTGT
83504600 AGCAAACCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
27 23 0.61
29 15 0.39
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.25
Consensus pattern (28 bp):
AAAAGAAAAGCCTTTGTGATGAACATCT
Found at i:83504596 original size:29 final size:29
Alignment explanation
Indices: 83504526--83505052 Score: 261
Period size: 29 Copynumber: 18.5 Consensus size: 29
83504516 GAACATGCAA
* *
83504526 GAAAAGAAAAGCATTTGTGATGAACCTCT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
* *
83504555 --AAAGAAAACCCTTTGTGGTGAACATCT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
* ** *
83504582 GAAAAGAAAAGCCTTTGTAGCAAACCTTT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
* * *
83504611 G-ATAGGAAAGCCTTTGTGG-CAAGCCTCT
1 GAAAAGAAAAGCCTTTGTGGTGAA-CCTCT
** * **
83504639 --AAA-AAAATTCTTTGTAGCAAACCTCT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
* **
83504665 GAAAA-AATAGCCTTTTGTGGCAAACCTCT
1 GAAAAGAAAAGCC-TTTGTGGTGAACCTCT
* * **
83504694 AAAAAGAAAAGCCTTTATGGCAAACCTCT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
* * *
83504723 -ACAAA-ACAAACCCTTTGTGCCT-AATCTCT
1 GA-AAAGA-AAAGCCTTTGTG-GTGAACCTCT
* *
83504752 -ACAAAGGAAAGCCTATGTGGTGAACCTCT
1 GA-AAAGAAAAGCCTTTGTGGTGAACCTCT
* * * *
83504781 -AAAAGGAAAGCCTATATGGCGAACCTCT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
* *
83504809 GAAAAG-AAAGCCTATGTTGTGAACCTCT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
* * *
83504837 G-AAAGGAAAGCCTTTATGGTGAACCTAT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
83504865 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
* * **
83504894 -AAACAGAAAAGCATTTGTTGCAAACCTCT
1 GAAA-AGAAAAGCCTTTGTGGTGAACCTCT
* * **
83504923 -AGAAAGGAAACCCTTTGT-G-GAAAATCAT
1 GA-AAAGAAAAGCCTTTGTGGTGAACCTC-T
* * * * **
83504951 TATAAAGGAAAGCCTATATGGCAAACC-CTT
1 GA-AAAGAAAAGCCTTTGTGGTGAACCTC-T
* * * **
83504981 G-AAAGGAATGCCTATGTGGAAAACCTCT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
* *
83505009 G-AAAGGAAAGCCTTTGTGGTCAACCTCT
1 GAAAAGAAAAGCCTTTGTGGTGAACCTCT
*
83505037 GAAAAAAAAAGGCCTT
1 GAAAAGAAAA-GCCTT
83505053 GGAGGAAATT
Statistics
Matches: 395, Mismatches: 78, Indels: 49
0.76 0.15 0.09
Matches are distributed among these distances:
26 15 0.04
27 37 0.09
28 145 0.37
29 180 0.46
30 16 0.04
31 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (29 bp):
GAAAAGAAAAGCCTTTGTGGTGAACCTCT
Done.