Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 247 of 345
Found at i:83808600 original size:20 final size:20
Alignment explanation
Indices: 83808546--83808588 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
83808536 TTTTAAAATA
83808546 AAGTGAAAATGATTTCAACC
1 AAGTGAAAATGATTTCAACC
*
83808566 AAGTGAAAATGATTTCAATC
1 AAGTGAAAATGATTTCAACC
83808586 AAG
1 AAG
83808589 CTAAAATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26
Consensus pattern (20 bp):
AAGTGAAAATGATTTCAACC
Found at i:83815804 original size:53 final size:52
Alignment explanation
Indices: 83815630--83815882 Score: 221
Period size: 55 Copynumber: 4.8 Consensus size: 52
83815620 TAGGGTTTAG
* *
83815630 GGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCTAAGGCAA
* * * * * *
83815685 GGATATCATGAAATACCATGTCAAGACATGGCATTGATAAGTCACTATAAGGCAAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGT---TCTAAGGC-AA
* * *
83815741 GG-T-CTCATGTAAGACCGTGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAA
1 GGATAC-CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTC-TAAGGCAA
* *
83815793 GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-TCAA---AA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCT-AAGGCAA
* * * *
83815842 GGATACCATGTAAGACCATGACAAGTCATGCCAATGGTAAG
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
83815883 GTACCTGTGT
Statistics
Matches: 164, Mismatches: 25, Indels: 24
0.77 0.12 0.11
Matches are distributed among these distances:
49 40 0.24
51 1 0.01
52 8 0.05
53 40 0.24
54 8 0.05
55 63 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.22
Consensus pattern (52 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTAAGGCAA
Found at i:83815834 original size:108 final size:110
Alignment explanation
Indices: 83815636--83815834 Score: 296
Period size: 108 Copynumber: 1.8 Consensus size: 110
83815626 TTAGGGATAC
* *
83815636 CATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATATCATGAAATAC
1 CATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGAAAGAC
*
83815701 CATGTCAAGACATGGCATTGATAAGTCACTATAAGGCAAAGGTCT
66 CATGTCAAGACATGGCAATGATAAGTCACTATAAGGCAAAGGTCT
* * * *
83815746 CATGTAAGACCGTGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGAAAGA
*
83815808 CCATGTCAAGACATGGCAATGGTAAGT
65 CCATGTCAAGACATGGCAATGATAAGT
83815835 TTCAAAAGGA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGAAAGAC
CATGTCAAGACATGGCAATGATAAGTCACTATAAGGCAAAGGTCT
Found at i:83815972 original size:23 final size:24
Alignment explanation
Indices: 83815946--83815990 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
83815936 ATGTCAAGGT
*
83815946 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
83815969 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
83815991 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:83819255 original size:38 final size:38
Alignment explanation
Indices: 83819213--83819289 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
83819203 AATATTAAAG
83819213 ATTTAAAGTATGGTACATGTTGCATAATTTGCAAATGA
1 ATTTAAAGTATGGTACATGTTGCATAATTTGCAAATGA
83819251 ATTTAAAGTATGGTACATGTTGCATAATTTGCAAATGA
1 ATTTAAAGTATGGTACATGTTGCATAATTTGCAAATGA
83819289 A
1 A
83819290 CTTACCTCGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (38 bp):
ATTTAAAGTATGGTACATGTTGCATAATTTGCAAATGA
Found at i:83824316 original size:38 final size:38
Alignment explanation
Indices: 83824261--83824337 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
83824251 TTAGCCTCGG
*
83824261 CGGATACACTCCCGAGCATATTTGCTGAGCTGGACAAA
1 CGGATACACTCCAGAGCATATTTGCTGAGCTGGACAAA
* *
83824299 CGGATACACTCGAGAGCATATTTGCTGAGTTGGACAAA
1 CGGATACACTCCAGAGCATATTTGCTGAGCTGGACAAA
83824337 C
1 C
83824338 TCTCTTTCGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (38 bp):
CGGATACACTCCAGAGCATATTTGCTGAGCTGGACAAA
Found at i:83826479 original size:20 final size:20
Alignment explanation
Indices: 83826454--83826505 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
83826444 ATGTTGTCAC
83826454 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
83826474 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
83826494 ACACGCCCGTGT
1 ACACGCCCGTGT
83826506 CCTTAGCCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.12, C:0.33, G:0.37, T:0.19
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:83831913 original size:48 final size:48
Alignment explanation
Indices: 83831843--83832028 Score: 241
Period size: 48 Copynumber: 3.9 Consensus size: 48
83831833 TAGGGTGATG
** * * **
83831843 TGTGATCTGATGTAAAACCATGTCTTGGATATGTAATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATCGATA
83831891 TGTGATCCCATGTAAGACCATGT-TTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATGTCTT-GGACATGGCATTGGCATCGATA
*
83831939 TGTGATCCCATGTAAGACCATGTC-TGGTACATGGCATTGGCATCGAAA
1 TGTGATCCCATGTAAGACCATGTCTTGG-ACATGGCATTGGCATCGATA
* * * *
83831987 TGTGATCCCGTGTAAGACCATATCTAGGATATGGCATTGGCA
1 TGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCA
83832029 CCTTACTATG
Statistics
Matches: 123, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
47 4 0.03
48 117 0.95
49 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATGTCTTGGACATGGCATTGGCATCGATA
Found at i:83835104 original size:21 final size:22
Alignment explanation
Indices: 83835074--83835117 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
83835064 ATGAACTCAG
83835074 TTTTAGAAGA-AATATCAGATTA
1 TTTTAGAAGATAATAT-AGATTA
*
83835096 TTTTA-AAGATTATATAGATTA
1 TTTTAGAAGATAATATAGATTA
83835117 T
1 T
83835118 GCAATGTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.43
Consensus pattern (22 bp):
TTTTAGAAGATAATATAGATTA
Found at i:83840181 original size:28 final size:28
Alignment explanation
Indices: 83840140--83840194 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
83840130 GCCTTCCTGC
* *
83840140 ATAAGCACATAACCCAATCTATTCAAAG
1 ATAAGCACACAACCCAATCCATTCAAAG
83840168 ATAAGCACACAACCCAATCCATTCAAA
1 ATAAGCACACAACCCAATCCATTCAAA
83840195 AATGCATCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.47, C:0.29, G:0.05, T:0.18
Consensus pattern (28 bp):
ATAAGCACACAACCCAATCCATTCAAAG
Found at i:83843407 original size:9 final size:9
Alignment explanation
Indices: 83843393--83843427 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
83843383 ATGAATAGAT
83843393 GCTCAAAAG
1 GCTCAAAAG
83843402 GCTCAAAAG
1 GCTCAAAAG
83843411 GCTCAAAAG
1 GCTCAAAAG
83843420 GCTCAAAA
1 GCTCAAAA
83843428 ATCTCACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.23, G:0.20, T:0.11
Consensus pattern (9 bp):
GCTCAAAAG
Found at i:83843433 original size:18 final size:18
Alignment explanation
Indices: 83843393--83843433 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
83843383 ATGAATAGAT
*
83843393 GCTCAAAAGGCTCAAAAG
1 GCTCAAAAGGCTCAAAAA
83843411 GCTCAAAAGGCTCAAAAA
1 GCTCAAAAGGCTCAAAAA
*
83843429 TCTCA
1 GCTCA
83843434 CAAAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.24, G:0.17, T:0.15
Consensus pattern (18 bp):
GCTCAAAAGGCTCAAAAA
Found at i:83843749 original size:57 final size:58
Alignment explanation
Indices: 83843641--83843755 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 58
83843631 CAATTAAAAT
*
83843641 TTATCCTAAATATGATATGAGAGTTTTTCATGAGAACAAGGTGATTGTTAATGAATAC
1 TTATCCTAAATATGATATGAGAGTTTTTCATGAGAACAAGGTGATTATTAATGAATAC
83843699 TTATCCTAAATATGATATGAGAG-TTTTCATGAGAACAAGGTGATTATTAATGAATAC
1 TTATCCTAAATATGATATGAGAGTTTTTCATGAGAACAAGGTGATTATTAATGAATAC
83843756 CCCCCCACAC
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
57 33 0.59
58 23 0.41
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (58 bp):
TTATCCTAAATATGATATGAGAGTTTTTCATGAGAACAAGGTGATTATTAATGAATAC
Found at i:83849312 original size:24 final size:24
Alignment explanation
Indices: 83849266--83849312 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
83849256 TTATAACATG
* * *
83849266 AAAATGACCATTTTGCCCCTAGGT
1 AAAATCACCATTATACCCCTAGGT
*
83849290 AAAATCACCATTATACCCTTAGG
1 AAAATCACCATTATACCCCTAGG
83849313 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.28
Consensus pattern (24 bp):
AAAATCACCATTATACCCCTAGGT
Found at i:83849379 original size:20 final size:20
Alignment explanation
Indices: 83849356--83849414 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
83849346 TAAACATGGT
*
83849356 ATGTATGATACGCACATGAC
1 ATGTATGATATGCACATGAC
*
83849376 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
83849396 ACGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
83849415 TGTATTCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:83849492 original size:24 final size:24
Alignment explanation
Indices: 83849465--83849634 Score: 243
Period size: 24 Copynumber: 7.0 Consensus size: 24
83849455 GAGGAAGTGG
*
83849465 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
83849489 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
83849513 AAAAAAGGGCTGATGCCCCAGTTATG
1 --AAAAGGGCTTATGCCCCAGTTATT
83849539 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
83849563 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
83849587 AAAAGGGCTTTTGCCCGAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
83849611 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
83849635 ATGATAAAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
24 100 0.76
25 10 0.08
26 22 0.17
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:83849543 original size:50 final size:50
Alignment explanation
Indices: 83849465--83849614 Score: 241
Period size: 50 Copynumber: 3.0 Consensus size: 50
83849455 GAGGAAGTGG
83849465 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
* *
83849515 AAAAGGGCTGATGCCCCAGTTATGAAAAGGGCTTATGCCCCAGTTATT--
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
* * *
83849563 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCGAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
83849613 AA
1 AA
83849615 GAGGCTAGGC
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
48 44 0.48
50 48 0.52
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
Found at i:83849585 original size:74 final size:72
Alignment explanation
Indices: 83849464--83849634 Score: 245
Period size: 74 Copynumber: 2.3 Consensus size: 72
83849454 GGAGGAAGTG
83849464 GAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTGATGC
1 GAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT--AAAAGGGCTGATGC
83849529 CCCAGTTAT
64 CCCAGTTAT
* **
83849538 GAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCC
1 GAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTGATGCCC
*
83849603 GAGTTAT
66 CAGTTAT
* *
83849610 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 GAAAAG-GGCTTATGCC-CCAGTTAT
83849635 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
72 30 0.34
73 11 0.12
74 48 0.54
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (72 bp):
GAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTGATGCCC
CAGTTAT
Found at i:83856244 original size:20 final size:20
Alignment explanation
Indices: 83856178--83856244 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
83856168 ATTTTGATAA
* *
83856178 ACATGGTATGTATGATACGC
1 ACATGATATGTATGATATGC
*
83856198 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
83856218 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
83856238 ACATGAT
1 ACATGAT
83856245 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:83856319 original size:24 final size:24
Alignment explanation
Indices: 83856292--83856339 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
83856282 GGAGGAAGTG
83856292 CAAAAAGGCTTATGCCCCAGTTAT
1 CAAAAAGGCTTATGCCCCAGTTAT
*
83856316 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAAGGCTTATGCCCCAGTTAT
83856340 ATGATAAAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (24 bp):
CAAAAAGGCTTATGCCCCAGTTAT
Found at i:83860347 original size:20 final size:20
Alignment explanation
Indices: 83860324--83860382 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
83860314 TAAACATGGT
*
83860324 ATGTATGATACGCACATGAC
1 ATGTATGATATGCACATGAC
*
83860344 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAC
*
83860364 ACGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
83860383 TGTATTCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:83860459 original size:24 final size:24
Alignment explanation
Indices: 83860433--83860600 Score: 234
Period size: 24 Copynumber: 7.0 Consensus size: 24
83860423 GAGGAAGTGC
*
83860433 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
83860457 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
83860481 AAAAAAGGGCTGATG-CCCAGTTATG
1 --AAAAGGGCTTATGCCCCAGTTATT
83860506 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
83860530 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
83860554 AAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
83860577 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
83860601 ATGATAAAGC
Statistics
Matches: 130, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
23 29 0.22
24 72 0.55
25 17 0.13
26 12 0.09
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:83860511 original size:49 final size:50
Alignment explanation
Indices: 83860433--83860580 Score: 232
Period size: 49 Copynumber: 3.0 Consensus size: 50
83860423 GAGGAAGTGC
83860433 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
* *
83860483 AAAAGGGCTGATG-CCCAGTTATGAAAAGGGCTTATGCCCCAGTTATT--
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
* *
83860530 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTG-CCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
83860579 AA
1 AA
83860581 GAGGCTAGGC
Statistics
Matches: 90, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
47 22 0.24
48 21 0.23
49 35 0.39
50 12 0.13
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
Found at i:83860552 original size:73 final size:71
Alignment explanation
Indices: 83860433--83860600 Score: 248
Period size: 73 Copynumber: 2.3 Consensus size: 71
83860423 GAGGAAGTGC
83860433 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTGATGCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT--AAAAGGGCTGATGCC
83860498 CAGTTATG
64 CAGTTATG
* **
83860506 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTGATGCCCA
*
83860571 GTTATT
66 GTTATG
*
83860577 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
83860601 ATGATAAAGC
Statistics
Matches: 88, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
71 30 0.34
72 11 0.12
73 47 0.53
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTGATGCCCA
GTTATG
Found at i:83867161 original size:20 final size:20
Alignment explanation
Indices: 83867095--83867161 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
83867085 ATTTTGATAA
* *
83867095 ACATGGTATGTATGATACGC
1 ACATGATATGTATGATATGC
*
83867115 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
83867135 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
83867155 ACATGAT
1 ACATGAT
83867162 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:83867236 original size:24 final size:24
Alignment explanation
Indices: 83867209--83867384 Score: 226
Period size: 24 Copynumber: 7.2 Consensus size: 24
83867199 GGAGGAAGTG
*
83867209 CAAAAAGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
83867233 CAAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
*
83867258 AAAAAAGGGCTTATGCCCCAGTTAT
1 -CAAAAGGGCTTATGCCCCAGTTAT
* *
83867283 CAAAAGGGCTGATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
83867307 TAAAAGAGCTTATGCCCCACTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
83867331 TAAAAGGGATTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
83867355 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
83867379 TAAAAG
1 CAAAAG
83867385 ACGCTAGGCC
Statistics
Matches: 135, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
24 111 0.82
25 2 0.01
26 22 0.16
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:83867336 original size:48 final size:48
Alignment explanation
Indices: 83867210--83867384 Score: 251
Period size: 48 Copynumber: 3.6 Consensus size: 48
83867200 GAGGAAGTGC
*
83867210 AAAAAGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
83867258 AAAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTGATGCCTCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* * * *
83867308 AAAAGAGCTTATGCCCCACTTATTAAAAGGGATTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* *
83867356 AAAAGGGCTTTTGCCCCAGTTATTAAAAG
1 AAAAGGGCTTATGCCCCAGTTATCAAAAG
83867385 ACGCTAGGCC
Statistics
Matches: 113, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
48 68 0.60
50 45 0.40
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:83873994 original size:20 final size:20
Alignment explanation
Indices: 83873928--83873994 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
83873918 ATTTTGATAA
* *
83873928 ACATGGTATGTATGATACGC
1 ACATGATATGTATGATATGC
*
83873948 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
83873968 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
83873988 ACATGAT
1 ACATGAT
83873995 GTATTCATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:83874069 original size:24 final size:24
Alignment explanation
Indices: 83874042--83874212 Score: 218
Period size: 24 Copynumber: 7.0 Consensus size: 24
83874032 GGAGGAAGTG
83874042 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
83874066 CAAAAGGGCTTATGCCCCAGTTATT
1 CAAAAGGGCTTATGCCCCAGTTA-T
* *
83874091 AAAAAAGGGCTTACGCCCCAGTTAT
1 -CAAAAGGGCTTATGCCCCAGTTAT
83874116 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
83874140 TAAAAGGGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
83874164 TAAAAGGGCTTTTGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
83874188 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
83874213 ATAATGAAGC
Statistics
Matches: 131, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
24 98 0.75
25 12 0.09
26 21 0.16
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:83874118 original size:50 final size:50
Alignment explanation
Indices: 83874043--83874192 Score: 241
Period size: 50 Copynumber: 3.0 Consensus size: 50
83874033 GAGGAAGTGC
83874043 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
*
83874093 AAAAGGGCTTACGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT--
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
* * * *
83874141 AAAAGGGCTTATGCCTCAGTTATTAAAAGGGCTTTTGCCCTAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
83874191 AA
1 AA
83874193 GAGGCTAGGC
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
48 43 0.47
50 49 0.53
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
Found at i:83874163 original size:74 final size:72
Alignment explanation
Indices: 83874042--83874212 Score: 236
Period size: 74 Copynumber: 2.3 Consensus size: 72
83874032 GGAGGAAGTG
83874042 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTACGC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT--AAAAGGGCTTACGC
83874107 CCCAGTTAT
64 CCCAGTTAT
* * **
83874116 CAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTCAGTTATTAAAAGGGCTTTTGCCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTACGCCC
*
83874181 TAGTTAT
66 CAGTTAT
* *
83874188 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
83874213 ATAATGAAGC
Statistics
Matches: 88, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
72 30 0.34
73 11 0.12
74 47 0.53
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (72 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTACGCCC
CAGTTAT
Found at i:83881326 original size:47 final size:47
Alignment explanation
Indices: 83881248--83881893 Score: 1094
Period size: 47 Copynumber: 13.6 Consensus size: 47
83881238 CCCTTCGGGA
* * * * * *
83881248 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
83881295 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83881342 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83881389 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83881438 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83881485 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83881532 CTTATCACATATATACAATTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83881579 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83881626 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83881673 CTTATCACATATATACACTTTCACATTCGTCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83881720 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83881769 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
83881816 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83881865 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
83881894 TATTCAAATA
Statistics
Matches: 572, Mismatches: 21, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
47 413 0.72
49 159 0.28
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83883404 original size:13 final size:13
Alignment explanation
Indices: 83883386--83883410 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83883376 TACTAAATTT
83883386 TCATGGATTCAAA
1 TCATGGATTCAAA
83883399 TCATGGATTCAA
1 TCATGGATTCAA
83883411 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:83902284 original size:43 final size:43
Alignment explanation
Indices: 83902200--83902331 Score: 108
Period size: 43 Copynumber: 3.1 Consensus size: 43
83902190 ACATAGTAAT
* * * **
83902200 ATACCAATTCCATATCCCAGATATGG-CTTTACATG-GGATCTC
1 ATACCAATGCCATAGCCCAGATATGGTC-TTACACGTAAATCTC
* * *
83902242 ATATCGATGCCAATAGCCCAGCTATGGTCTTACACG-AAATCTC
1 ATACCAATGCC-ATAGCCCAGATATGGTCTTACACGTAAATCTC
* * * *
83902285 ATACCAATGTCATATCCCATATATTGTCTTACACGTAAACTCTC
1 ATACCAATGCCATAGCCCAGATATGGTCTTACACGTAAA-TCTC
83902329 ATA
1 ATA
83902332 ACCCTTATGT
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 28 0.39
43 35 0.49
44 8 0.11
ACGTcount: A:0.31, C:0.27, G:0.12, T:0.30
Consensus pattern (43 bp):
ATACCAATGCCATAGCCCAGATATGGTCTTACACGTAAATCTC
Found at i:83910825 original size:40 final size:40
Alignment explanation
Indices: 83910770--83910850 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
83910760 TATAGAGAAA
*
83910770 GGCTTTCCTGCCTCCTTCTCTTTGACTAACCGTAGGGGGT
1 GGCTTTCCTGCCTCCTTCTCTTTGACTAACCATAGGGGGT
83910810 GGCTTTCCTGCCTCCTTCTCTTTGACTAACCATAGGGGGT
1 GGCTTTCCTGCCTCCTTCTCTTTGACTAACCATAGGGGGT
83910850 G
1 G
83910851 TACTATCAGA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.11, C:0.30, G:0.25, T:0.35
Consensus pattern (40 bp):
GGCTTTCCTGCCTCCTTCTCTTTGACTAACCATAGGGGGT
Found at i:83925909 original size:47 final size:47
Alignment explanation
Indices: 83925835--83925988 Score: 272
Period size: 47 Copynumber: 3.3 Consensus size: 47
83925825 TCCTTCGGGA
*
83925835 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
83925882 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83925929 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
83925976 CTTATCACATATA
1 CTTATCACATATA
83925989 CATATCTTGT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.29, C:0.30, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:83927856 original size:13 final size:13
Alignment explanation
Indices: 83927838--83927862 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83927828 TACTAAATTT
83927838 TCATGGATTCAAA
1 TCATGGATTCAAA
83927851 TCATGGATTCAA
1 TCATGGATTCAA
83927863 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:83930284 original size:47 final size:47
Alignment explanation
Indices: 83930230--83930470 Score: 356
Period size: 47 Copynumber: 5.1 Consensus size: 47
83930220 TTAGGATTTT
** * * *
83930230 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83930277 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83930324 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
83930371 ATGTGATAAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
83930418 ATGAGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
83930465 ATGTGA
1 ATGTGA
83930471 AATATGTATG
Statistics
Matches: 175, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 175 1.00
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:83930305 original size:25 final size:25
Alignment explanation
Indices: 83930277--83930355 Score: 78
Period size: 25 Copynumber: 3.3 Consensus size: 25
83930267 TGAATGGCCA
83930277 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
83930302 ATGTGAT-AAGGCCG-A-ATGGC-CA-
1 ATGTGATGAATG-TGAACAT-GCATAT
83930324 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
83930349 ATGTGAT
1 ATGTGAT
83930356 AAGGCCGAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 9 0.22
25 15 0.37
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:83930330 original size:22 final size:22
Alignment explanation
Indices: 83930302--83930379 Score: 70
Period size: 22 Copynumber: 3.4 Consensus size: 22
83930292 ACATGCATAT
83930302 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
83930324 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
83930348 TATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
83930371 ATGTGATAA
1 ATGTGATAA
83930380 ATGTGAGCAT
Statistics
Matches: 43, Mismatches: 6, Indels: 14
0.68 0.10 0.22
Matches are distributed among these distances:
22 17 0.40
23 9 0.21
24 9 0.21
25 8 0.19
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:83930331 original size:94 final size:94
Alignment explanation
Indices: 83930230--83930518 Score: 359
Period size: 94 Copynumber: 3.1 Consensus size: 94
83930220 TTAGGATTTT
** * * * *
83930230 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCTGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
83930295 TGCATATATGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
*
83930324 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAGCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
*
83930389 TGCATATGTGTGATAAGGCCGAATGGCCA
66 TGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
83930418 ATGAGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTAATGTGA-AATATGTATGA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAA-ATG--TGA
* * * *
83930482 GATATG--TATATGTGGTAAAGCCGAATGGCTA
63 -ACATGCATATATGTGATAAGGCCGAATGGCCA
83930513 ATGTGA
1 ATGTGA
83930519 AATATGTATG
Statistics
Matches: 169, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
93 2 0.01
94 136 0.80
95 25 0.15
96 3 0.02
97 3 0.02
ACGTcount: A:0.34, C:0.10, G:0.28, T:0.27
Consensus pattern (94 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAACA
TGCATATATGTGATAAGGCCGAATGGCCA
Found at i:83930603 original size:52 final size:48
Alignment explanation
Indices: 83930440--83930626 Score: 304
Period size: 48 Copynumber: 3.8 Consensus size: 48
83930430 TGAACATGCA
83930440 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
83930488 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
83930536 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATGTATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATG--TATGAGATATG
*
83930588 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
83930627 GGCGATGTGC
Statistics
Matches: 130, Mismatches: 3, Indels: 12
0.90 0.02 0.08
Matches are distributed among these distances:
47 1 0.01
48 77 0.59
49 2 0.02
50 10 0.08
51 2 0.02
52 37 0.28
53 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:83930609 original size:100 final size:96
Alignment explanation
Indices: 83930441--83930626 Score: 311
Period size: 100 Copynumber: 1.9 Consensus size: 96
83930431 GAACATGCAT
83930441 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
83930506 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
83930537 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATGTATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATG--TATGAGATATGTATATGTGGTAAA
*
83930601 GCCGAATGGCTAGTGTGAAATATGTA
61 GCCGAATGGCTAATGTGAAATATGTA
83930627 GGCGATGTGC
Statistics
Matches: 84, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
95 1 0.01
96 27 0.32
97 2 0.02
98 5 0.06
100 49 0.58
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:83930822 original size:37 final size:37
Alignment explanation
Indices: 83930772--83930879 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
83930762 GGAAATATAT
*
83930772 TCTGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
83930809 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
** * *
83930846 TCCAGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCTGGGTAAGACCCGATGACTACGTGTGGAGATT
83930880 TCGTCTGAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:83932343 original size:42 final size:42
Alignment explanation
Indices: 83932235--83932343 Score: 148
Period size: 43 Copynumber: 2.6 Consensus size: 42
83932225 TATACCAATA
* *
83932235 CCATATCCCAGATATGGTCTTACATGAGATCTCATATCGATG
1 CCATATCCTAGATATGGTCTTACATGAAATCTCATATCGATG
* *
83932277 CCAATAGCCTAGCTATGGTCTTACATGAAATCTCATA-CTGATG
1 CC-ATATCCTAGATATGGTCTTACATGAAATCTCATATC-GATG
*
83932320 TCATATCCTAGATATGGTCTTACA
1 CCATATCCTAGATATGGTCTTACA
83932344 CGTAAACTCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 23 0.40
43 35 0.60
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
CCATATCCTAGATATGGTCTTACATGAAATCTCATATCGATG
Found at i:83937725 original size:23 final size:20
Alignment explanation
Indices: 83937699--83937746 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 20
83937689 CCTTCTGCAG
83937699 TGAATGTCTGCTCAAATATGCTT
1 TGAATGTC--CTC-AATATGCTT
*
83937722 TGAA-GTCCTCCATATGCTT
1 TGAATGTCCTCAATATGCTT
83937741 TGAATG
1 TGAATG
83937747 AACAATTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 12 0.52
20 4 0.17
22 3 0.13
23 4 0.17
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (20 bp):
TGAATGTCCTCAATATGCTT
Found at i:83939544 original size:14 final size:15
Alignment explanation
Indices: 83939524--83939566 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
83939514 CCATTGCCGA
83939524 AAATTTTAAATTTC-
1 AAATTTTAAATTTCG
* * *
83939538 TAATTTTCAATATCG
1 AAATTTTAAATTTCG
83939553 AAATTTTAAATTTC
1 AAATTTTAAATTTC
83939567 AAAACATAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (15 bp):
AAATTTTAAATTTCG
Found at i:83941354 original size:3 final size:3
Alignment explanation
Indices: 83941343--83941836 Score: 207
Period size: 3 Copynumber: 164.7 Consensus size: 3
83941333 AAAAATGATG
* * * *
83941343 ATA AGA ATA ATA ATA ATA A-A ATAA AGA ATA ATTA A-A ATG ATA CCAGA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA A-TA ATA ATA ATA --ATA
* *
83941390 ATA ATGA A-A ATA ATA CCTTA ATA ATA ATA ATA ATA ATA ATA GAGA ATA
1 ATA AT-A ATA ATA ATA --ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA
* * * * *
83941438 ACA ATA CATTG ATA ATA ATA TATG TTA ATA AAA ATA ATA ATA AT- ATGCA
1 ATA ATA -A-TA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA AT--A
* * * * *
83941487 AAA ATA ATA ATA ATA AT- ATA GTA AAA ATA ATA ATA AT- ATG TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * **
83941533 AGA ATA ATA GTA GTA GTA ATA ATA ATA ATA CATT A-A ATT ACG ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
* * * * * *
83941578 GTA A-A TTA ATA ATA ATA GTG ACA ATA ATA ATA ATA ATA AT- ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
83941624 A-A ACTA ATA ATA ATA GTA ATA GTG ATA ATA ATA ATA A-A ATA ATA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
83941668 ATA ATA ATA GT- ATG TTAA ATA ATA ATA GTA A-A A-A GATA GTA GTA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA -ATA ATA ATA
* * * * *
83941712 ATA ATA ATT ATA AAA ATG ATA ATGA A-C ATA A-A ATG ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
* * * * * *
83941756 CTA ATG TTA ATA ATA ATA ATA A-A A-A ATA AGA ATA GTA ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * *
83941802 CTA GTA ATA ATA ATA A-A TATA ATA ATT ATA ATA AT
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA AT
83941837 GTGATAAAAC
Statistics
Matches: 360, Mismatches: 95, Indels: 72
0.68 0.18 0.14
Matches are distributed among these distances:
2 32 0.09
3 300 0.83
4 22 0.06
5 6 0.02
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:83941392 original size:20 final size:20
Alignment explanation
Indices: 83941367--83941424 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
83941357 AATAAAATAA
* *
83941367 AGAATAATTAAAATGATACC
1 AGAATAATGAAAATAATACC
83941387 AGAATAATGAAAATAATACC
1 AGAATAATGAAAATAATACC
**
83941407 TTAATAAT-AATAATAATA
1 AGAATAATGAA-AATAATA
83941425 ATAATAGAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.28
Consensus pattern (20 bp):
AGAATAATGAAAATAATACC
Found at i:83941632 original size:41 final size:41
Alignment explanation
Indices: 83941470--83941836 Score: 141
Period size: 41 Copynumber: 8.9 Consensus size: 41
83941460 TGTTAATAAA
* *
83941470 AATAATAATAAT-ATGCA-AAAATAATAATAATAATA-TAGT
1 AATAATAATAATAAT-AATAAAATAATAATAATAATAGTAGC
* ** * * *
83941509 AAAAATAATAATAAT-ATGTTAATAAGAATAATAGTAGTAGT
1 AATAATAATAATAATAAT-AAAATAATAATAATAATAGTAGC
*
83941550 AATAATAATAATACATTAAATTACGATAGTAAATTAATAATAATAGT-GAC
1 AATAATAATAATA-A-T-AA-TA--A-AAT-AA-TAATAATAATAGTAG-C
* * * *
83941600 AATAATAATAATAATAATATATTAA-AACTAATAATAATAGT
1 AATAATAATAATAATAATAAAATAATAA-TAATAATAGTAGC
* * *
83941641 AATAGTGATAATAATAATAAAATAATAATAATAATAGTATGT
1 AATAATAATAATAATAATAAAATAATAATAATAATAGTA-GC
* * * * * *
83941683 TA-AATAATAATAGTAA-AAAGATAGTAGTAATAATAATTA-T
1 AATAATAATAATAATAATAAA-ATAATAATAATAAT-AGTAGC
* * * * * *
83941723 AAAAATGATAATGAA-CATAAAATGATAATAATACTAAT-G-
1 AATAATAATAAT-AATAATAAAATAATAATAATAATAGTAGC
* * * * *
83941762 -TTAATAATAATAATAA-AAAATAAGAATAGTAATAATAGT
1 AATAATAATAATAATAATAAAATAATAATAATAATAGTAGC
* * * *
83941801 ACTAGTAATAATAATAAATATAATAATTATAATAAT
1 AATAATAATAATAAT-AATAAAATAATAATAATAAT
83941837 GTGATAAAAC
Statistics
Matches: 246, Mismatches: 51, Indels: 59
0.69 0.14 0.17
Matches are distributed among these distances:
37 18 0.07
38 11 0.04
39 11 0.04
40 37 0.15
41 100 0.41
42 29 0.12
43 3 0.01
45 1 0.00
46 3 0.01
47 2 0.01
48 3 0.01
49 4 0.02
50 24 0.10
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (41 bp):
AATAATAATAATAATAATAAAATAATAATAATAATAGTAGC
Found at i:83942436 original size:7 final size:7
Alignment explanation
Indices: 83942424--83942448 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
83942414 AAAAGTGACT
83942424 TTTTTTC
1 TTTTTTC
83942431 TTTTTTC
1 TTTTTTC
83942438 TTTTTTC
1 TTTTTTC
83942445 TTTT
1 TTTT
83942449 CTTTGGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:83942601 original size:18 final size:17
Alignment explanation
Indices: 83942574--83942607 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
83942564 TATTTTGATT
83942574 TCCTGATTTGGGCTATTC
1 TCCTGATTTGGG-TATTC
*
83942592 TCCTGCTTTGGGTATT
1 TCCTGATTTGGGTATT
83942608 ACTAGAATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.09, C:0.21, G:0.24, T:0.47
Consensus pattern (17 bp):
TCCTGATTTGGGTATTC
Found at i:83963079 original size:19 final size:19
Alignment explanation
Indices: 83963055--83963094 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
83963045 GTGTTTTATG
83963055 ATAGAATATGAGGTTTTAA
1 ATAGAATATGAGGTTTTAA
83963074 ATAGAATATGAGGTTTTAA
1 ATAGAATATGAGGTTTTAA
83963093 AT
1 AT
83963095 TATGTTAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (19 bp):
ATAGAATATGAGGTTTTAA
Found at i:83963854 original size:53 final size:53
Alignment explanation
Indices: 83963675--83963881 Score: 215
Period size: 53 Copynumber: 3.8 Consensus size: 53
83963665 ATTAGGGTTT
* *
83963675 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGC
* * * * *
83963730 AAGGA-ATCGTGTAAGCCCATGTCAAGACATGGCATTGATAAGTTACAATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* *
83963784 AAAGG-T-CTCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATAC-CATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
83963837 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGTTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT
83963882 TCAAAAGGAT
Statistics
Matches: 125, Mismatches: 19, Indels: 18
0.77 0.12 0.11
Matches are distributed among these distances:
51 2 0.02
52 6 0.05
53 47 0.38
54 30 0.24
55 40 0.32
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:83963880 original size:108 final size:108
Alignment explanation
Indices: 83963683--83963889 Score: 294
Period size: 108 Copynumber: 1.9 Consensus size: 108
83963673 TTAAGGATAC
* * *
83963683 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAATCGTGTAAGCCC
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAACCATGTAAGACC
*
83963748 ATGTCAAGACATGGCATTGATAAGTTACAATAAGGCAAAGGTCT
66 ATGTCAAGACATGGCAATGATAAGTTACAA-AAGGCAAAGGTCT
* *
83963792 CATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGA
1 CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGA-ACCATGTAAGA
* *
83963854 CCATGTCAAGACATGGCAATGTTAAGTTTCAAAAGG
64 CCATGTCAAGACATGGCAATGATAAGTTACAAAAGG
83963890 ATACCACGTA
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
106 3 0.03
107 16 0.18
108 44 0.50
109 25 0.28
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACAAAAGGCAAAGGTCT
Found at i:83964141 original size:16 final size:16
Alignment explanation
Indices: 83964120--83964150 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83964110 ATAAATTTGA
83964120 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
83964136 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
83964151 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:83965602 original size:13 final size:13
Alignment explanation
Indices: 83965579--83965611 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
83965569 AGACCTGCAC
83965579 CCCCTCATGTAGCT
1 CCCC-CATGTAGCT
83965593 CCCCCATGTAGCT
1 CCCCCATGTAGCT
83965606 CCCCCA
1 CCCCCA
83965612 ATCATAGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.15, C:0.52, G:0.12, T:0.21
Consensus pattern (13 bp):
CCCCCATGTAGCT
Found at i:83968869 original size:27 final size:27
Alignment explanation
Indices: 83968841--83968996 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
83968831 TGCTATACAA
* * *
83968841 TCAAGTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAG
* *
83968868 TCAAATCGCACACTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAG
* * * *
83968895 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAG
*
83968923 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAG
* *
83968950 TCATTTCGCACACTTAGTGCAACATAG
1 TCAATTCGCACACTTAGTGCCACATAG
83968977 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
83968997 TGTACAATTT
Statistics
Matches: 107, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 82 0.77
28 24 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAG
Found at i:83968963 original size:82 final size:81
Alignment explanation
Indices: 83968841--83968996 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
83968831 TGCTATACAA
* * *
83968841 TCAAGTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAAGTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
83968906 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
83968923 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAAGTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
83968987 CACTTAGTGC
65 CACTTAGTGC
83968997 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAAGTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83976960 original size:27 final size:27
Alignment explanation
Indices: 83976925--83977080 Score: 161
Period size: 27 Copynumber: 5.7 Consensus size: 27
83976915 TGCTATACAA
* * *
83976925 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAAATCGCACACTTAGTGCCACATAG
*
83976952 TCAAATCGCACACTTAGTGCTACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
* * * *
83976979 TTAGACTCGCACACTTAGTGCCGCATGG
1 TCA-AATCGCACACTTAGTGCCACATAG
* *
83977007 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAAATCGCACACTTAGTGCCA-CATAG
** *
83977034 TCATTTCGCACACTTAGTGCAACATAG
1 TCAAATCGCACACTTAGTGCCACATAG
*
83977061 TCGAATCGCACACTTAGTGC
1 TCAAATCGCACACTTAGTGC
83977081 TGTACAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 82 0.77
28 23 0.22
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAATCGCACACTTAGTGCCACATAG
Found at i:83976990 original size:55 final size:55
Alignment explanation
Indices: 83976905--83977081 Score: 195
Period size: 54 Copynumber: 3.3 Consensus size: 55
83976895 ATATTGAGCC
* * *
83976905 CGCACACTCA-TGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
83976958 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
83977013 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
83977067 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
83977082 GTACAATTTA
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
52 2 0.02
53 10 0.10
54 46 0.45
55 45 0.44
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:83977045 original size:82 final size:81
Alignment explanation
Indices: 83976925--83977080 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
83976915 TGCTATACAA
* * *
83976925 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
83976990 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
83977007 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
83977071 CACTTAGTGC
65 CACTTAGTGC
83977081 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:83982756 original size:55 final size:55
Alignment explanation
Indices: 83982656--83982759 Score: 140
Period size: 55 Copynumber: 1.9 Consensus size: 55
83982646 TTAAGGATAC
* * *
83982656 CATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAAT
1 CATGTAAGACCATGCCAAGACATGGCAATTGATAAGGTTTATAAGGCAAGGAAAT
*
83982711 CATGTAAGACCATGTCAAGACATGGC-ATTGATAA-GTTACTATAAGGCAA
1 CATGTAAGACCATGCCAAGACATGGCAATTGATAAGGTT--TATAAGGCAA
83982760 AGGTCAGGGG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
53 3 0.07
54 7 0.16
55 33 0.77
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (55 bp):
CATGTAAGACCATGCCAAGACATGGCAATTGATAAGGTTTATAAGGCAAGGAAAT
Found at i:83986944 original size:46 final size:45
Alignment explanation
Indices: 83986875--83987048 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 45
83986865 GTAACCCGCC
* *
83986875 CCTAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCTCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
*
83986920 CCGTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCACAT
* ** *
83986970 -CTCA-TGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
*
83987013 CTATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 C-CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG
83987049 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 59 0.55
47 27 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
CCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCACAT
Found at i:83987040 original size:93 final size:93
Alignment explanation
Indices: 83986881--83987052 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
83986871 CGCCCCTAAG
** * *
83986881 TGAACTCGGACTCAACTCAACGAGCTCGGGCATTCTCATCCGTAAGTGAACTCAGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
83986946 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
83986974 TGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCTATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
83987039 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
83987053 TCAACCATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:83992509 original size:40 final size:40
Alignment explanation
Indices: 83992464--83992648 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
83992454 CTTGCACAAG
* * *
83992464 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
83992504 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
83992544 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
83992584 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
83992625 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
83992649 CATTCGAATA
Statistics
Matches: 125, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 95 0.76
41 30 0.24
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:84002231 original size:180 final size:180
Alignment explanation
Indices: 84001928--84002278 Score: 639
Period size: 180 Copynumber: 1.9 Consensus size: 180
84001918 TGTAAAACAC
* *
84001928 TTTGGTGAGGTAAAAATAATTGAGCTTTAAAAGATGGTCGAAAACTATTTAAGAACTAAGTAATT
1 TTTGGTGAGGTAAAAATAATTGAGCTTTAAAAGATGGTCAAAAACTATTTAAGAACTAAGTAAAT
*
84001993 GATTAAAAATAAAACAATGAGTTCTAATGCACGATTTCAAATAAGATTTAACCAAGGTAACATAC
66 GATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATAAGATTTAACCAAGGTAACATAC
84002058 TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTATATTCATGT
131 TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTATATTCATGT
* *
84002108 TTTGGTGAGGTAAAAATAATTTAGCTTTAAAAGATGGTCAAAAATTATTTAAGAACTAAGTAAAT
1 TTTGGTGAGGTAAAAATAATTGAGCTTTAAAAGATGGTCAAAAACTATTTAAGAACTAAGTAAAT
* *
84002173 GATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATTAGATTTAATCAAGGTAACATAC
66 GATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATAAGATTTAACCAAGGTAACATAC
84002238 TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTA
131 TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTA
84002279 AGTTAATGTT
Statistics
Matches: 164, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
180 164 1.00
ACGTcount: A:0.41, C:0.09, G:0.15, T:0.35
Consensus pattern (180 bp):
TTTGGTGAGGTAAAAATAATTGAGCTTTAAAAGATGGTCAAAAACTATTTAAGAACTAAGTAAAT
GATTAAAAATAAAACAAGGAGTTCTAATGCACGATTTCAAATAAGATTTAACCAAGGTAACATAC
TTGTGTTGGATTAATCATATTCCTTTAACTTAGAATTATTATATTCATGT
Found at i:84004048 original size:28 final size:28
Alignment explanation
Indices: 84004008--84004064 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
84003998 TAGAAGGAAG
*
84004008 AAGGTTTTATGCATGGTTGCATGGGCGT
1 AAGGTTTTATGCATGATTGCATGGGCGT
*
84004036 AAGGTTTTATGCATGATTGCATTGGCGT
1 AAGGTTTTATGCATGATTGCATGGGCGT
84004064 A
1 A
84004065 GTGTATGCGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.21, C:0.11, G:0.32, T:0.37
Consensus pattern (28 bp):
AAGGTTTTATGCATGATTGCATGGGCGT
Found at i:84006437 original size:9 final size:9
Alignment explanation
Indices: 84006410--84006445 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
84006400 TAAGTCTAAT
84006410 ATGTGTTTAA
1 ATGTGTTT-A
*
84006420 ATGTTTTTA
1 ATGTGTTTA
84006429 ATGTGTTTA
1 ATGTGTTTA
84006438 ATGTGTTT
1 ATGTGTTT
84006446 TTAATGGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 17 0.71
10 7 0.29
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.58
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:84006446 original size:20 final size:19
Alignment explanation
Indices: 84006410--84006456 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
84006400 TAAGTCTAAT
84006410 ATGTGTTTAAATGTTTTTA
1 ATGTGTTTAAATGTTTTTA
*
84006429 ATGTGTTTAATGTGTTTTTA
1 ATGTGTTTAA-ATGTTTTTA
*
84006449 ATGGGTTT
1 ATGTGTTT
84006457 GTTTGTAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.57
Consensus pattern (19 bp):
ATGTGTTTAAATGTTTTTA
Found at i:84007381 original size:20 final size:20
Alignment explanation
Indices: 84007356--84007394 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
84007346 TTTTGCAACC
84007356 TTATTTTAAGCCTATTTATA
1 TTATTTTAAGCCTATTTATA
84007376 TTATTTTAAGCCTATTTAT
1 TTATTTTAAGCCTATTTAT
84007395 TTCTTCTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.05, T:0.56
Consensus pattern (20 bp):
TTATTTTAAGCCTATTTATA
Found at i:84008148 original size:24 final size:24
Alignment explanation
Indices: 84008120--84008170 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
84008110 GGGCTAGTCT
*
84008120 TTCATAATTTGACACAAAGACTTA
1 TTCATAATTTGACAAAAAGACTTA
* * *
84008144 TTCATAGTTTGCCAAAAAGGCTTA
1 TTCATAATTTGACAAAAAGACTTA
84008168 TTC
1 TTC
84008171 TTACATAGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (24 bp):
TTCATAATTTGACAAAAAGACTTA
Found at i:84008190 original size:28 final size:28
Alignment explanation
Indices: 84008146--84008200 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
84008136 AAGACTTATT
84008146 CATAGTTTGCCAAAAAGGCTTATTCTTA
1 CATAGTTTGCCAAAAAGGCTTATTCTTA
*
84008174 CATAGATTT-CCACAAAGGCTTATTCTT
1 CATAG-TTTGCCAAAAAGGCTTATTCTT
84008201 TCATGGTTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 22 0.88
29 3 0.12
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (28 bp):
CATAGTTTGCCAAAAAGGCTTATTCTTA
Found at i:84009820 original size:63 final size:63
Alignment explanation
Indices: 84009747--84009873 Score: 218
Period size: 63 Copynumber: 2.0 Consensus size: 63
84009737 ATTCAATACA
*
84009747 AAGAATTTCACTATTTTAACATTTCAACTCAATAGTCTTTCATCTACAGTTTACAACAGCATC
1 AAGAATTTCACTATTTTAACATTTCAACTCAATAGTCTTTCATCTACAATTTACAACAGCATC
* * *
84009810 AAGAATTTCACTATTTTGACATTTCAACTCTATAGTCTTTCATCTACAATTTACAATAGCATC
1 AAGAATTTCACTATTTTAACATTTCAACTCAATAGTCTTTCATCTACAATTTACAACAGCATC
84009873 A
1 A
84009874 TGCAGAGTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (63 bp):
AAGAATTTCACTATTTTAACATTTCAACTCAATAGTCTTTCATCTACAATTTACAACAGCATC
Found at i:84023267 original size:40 final size:40
Alignment explanation
Indices: 84023186--84023407 Score: 358
Period size: 40 Copynumber: 5.6 Consensus size: 40
84023176 CAACCAAGTA
** * *
84023186 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
84023225 CCTTCGGGACTTAGCCCGGTTATACTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
84023265 CCTTCGGGACTTAGCCTGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
84023305 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
84023345 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
84023385 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
84023408 CATCCGAATA
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.08
40 158 0.92
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:84031346 original size:40 final size:40
Alignment explanation
Indices: 84031265--84031486 Score: 279
Period size: 40 Copynumber: 5.6 Consensus size: 40
84031255 CAACCAAGTA
** * *
84031265 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
84031304 CCTTCGGGACTTAGCCCGGTTATACTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
84031344 CCTTCGGGACTTAGCCTGGTTATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
84031384 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
** * * * *
84031424 CCTTCGGGACTTAGCCC-GAAATTAGTCATTAGAACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
84031464 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
84031487 CATCCGAATA
Statistics
Matches: 159, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 15 0.09
40 142 0.89
41 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:84040623 original size:23 final size:24
Alignment explanation
Indices: 84040597--84040802 Score: 189
Period size: 23 Copynumber: 8.7 Consensus size: 24
84040587 GCATGATAAA
* *
84040597 TAAGCTCCTT-TGAGTTGAAACGG
1 TAAGCTCCTTACGAGCTGAAACGG
*
84040620 TAAGCTCC-T-CTGAGCTGAAATGG
1 TAAGCTCCTTAC-GAGCTGAAACGG
84040643 TAAGCT-CTTACGAGCTGACATATCGG
1 TAAGCTCCTTACGAGCTGA-A-A-CGG
* *
84040669 TAAGCTCATT-CGAGCTGAAATGG
1 TAAGCTCCTTACGAGCTGAAACGG
*
84040692 TAAGC-CCTTACAAGCTGAAACGG
1 TAAGCTCCTTACGAGCTGAAACGG
* *
84040715 TAAGCT-CTTGCGAGCTGATATATCTG
1 TAAGCTCCTTACGAGCTGA-A-A-CGG
*
84040741 TAAGCTCATT-CGAGCTGAAACGG
1 TAAGCTCCTTACGAGCTGAAACGG
*
84040764 TAAGCT-CTTACAAGCTGAAACGG
1 TAAGCTCCTTACGAGCTGAAACGG
84040787 TAAGCT-CTTACGAGCT
1 TAAGCTCCTTACGAGCT
84040803 ATGGTGAGTC
Statistics
Matches: 152, Mismatches: 17, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
22 7 0.05
23 100 0.66
24 5 0.03
25 4 0.03
26 32 0.21
27 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
TAAGCTCCTTACGAGCTGAAACGG
Found at i:84040672 original size:49 final size:46
Alignment explanation
Indices: 84040612--84040802 Score: 217
Period size: 49 Copynumber: 4.0 Consensus size: 46
84040602 TCCTTTGAGT
*
84040612 TGAAACGGTAAGCTCCT-CTGAGCTGAAATGGTAAGCTCTTACGAGC
1 TGAAACGGTAAGCTCTTAC-GAGCTGAAATGGTAAGCTCTTACGAGC
* *
84040658 TGACATATCGGTAAGCTCATT-CGAGCTGAAATGGTAAGCCCTTACAAGC
1 TGA-A-A-CGGTAAGCTC-TTACGAGCTGAAATGGTAAGCTCTTACGAGC
* *
84040707 TGAAACGGTAAGCTCTTGCGAGCTGATATATCTGTAAGCTCATT-CGAGC
1 TGAAACGGTAAGCTCTTACGAGCTGA-A-AT-GGTAAGCTC-TTACGAGC
* *
84040756 TGAAACGGTAAGCTCTTACAAGCTGAAACGGTAAGCTCTTACGAGC
1 TGAAACGGTAAGCTCTTACGAGCTGAAATGGTAAGCTCTTACGAGC
84040802 T
1 T
84040803 ATGGTGAGTC
Statistics
Matches: 125, Mismatches: 10, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
45 4 0.03
46 35 0.28
47 4 0.03
48 5 0.04
49 73 0.58
50 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.25
Consensus pattern (46 bp):
TGAAACGGTAAGCTCTTACGAGCTGAAATGGTAAGCTCTTACGAGC
Found at i:84040696 original size:72 final size:72
Alignment explanation
Indices: 84040597--84040802 Score: 274
Period size: 72 Copynumber: 2.9 Consensus size: 72
84040587 GCATGATAAA
* * * * *
84040597 TAAGCTCCTTTGAGTTGAAACGGTAAGCTCCTCTGAGCTGAAATGGTAAGCTCTTACGAGCTGAC
1 TAAGCTCATTCGAGCTGAAACGGTAAGCTCCTCTAAGCTGAAACGGTAAGCTCTTACGAGCTGAC
84040662 ATATCGG
66 ATATCGG
* *
84040669 TAAGCTCATTCGAGCTGAAATGGTAAGC-CCT-TACAAGCTGAAACGGTAAGCTCTTGCGAGCTG
1 TAAGCTCATTCGAGCTGAAACGGTAAGCTCCTCT--AAGCTGAAACGGTAAGCTCTTACGAGCTG
* *
84040732 ATATATCTG
64 ACATATCGG
*
84040741 TAAGCTCATTCGAGCTGAAACGGTAAGCTCTTAC-AAGCTGAAACGGTAAGCTCTTACGAGCT
1 TAAGCTCATTCGAGCTGAAACGGTAAGCTCCT-CTAAGCTGAAACGGTAAGCTCTTACGAGCT
84040803 ATGGTGAGTC
Statistics
Matches: 117, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
70 1 0.01
71 3 0.03
72 111 0.95
73 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (72 bp):
TAAGCTCATTCGAGCTGAAACGGTAAGCTCCTCTAAGCTGAAACGGTAAGCTCTTACGAGCTGAC
ATATCGG
Found at i:84061948 original size:15 final size:17
Alignment explanation
Indices: 84061918--84061949 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
84061908 TTGATACTTG
84061918 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
84061935 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
84061950 AAATATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:84072010 original size:40 final size:40
Alignment explanation
Indices: 84071953--84072094 Score: 241
Period size: 40 Copynumber: 3.6 Consensus size: 40
84071943 ACTCATAGCT
*
84071953 TGCGGGTCTCT-AGCCCGGATAACATTCCAGCACGAAGCC
1 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGAAGCC
*
84071992 TGTGGGTCTTTAAGCCCGGATAACATTCCAGCACGAAGCC
1 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGAAGCC
84072032 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGAAGCC
1 TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGAAGCC
* *
84072072 TACGGGTCTTTAAGCCCAGATAA
1 TGCGGGTCTTTAAGCCCGGATAA
84072095 TACCTCAAGT
Statistics
Matches: 97, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 9 0.09
40 88 0.91
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (40 bp):
TGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGAAGCC
Found at i:84074559 original size:6 final size:6
Alignment explanation
Indices: 84074543--84074588 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
84074533 TTTAAAAACT
* * *
84074543 TTTTTA TTTTTTA TTTTTA TTTTTA ATTTTA CTTTTA TATTTA TTT
1 TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
84074589 ATCTTAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
6 28 0.82
7 6 0.18
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:84074561 original size:13 final size:13
Alignment explanation
Indices: 84074543--84074572 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
84074533 TTTAAAAACT
*
84074543 TTTTTATTTTTTA
1 TTTTTATTTTTAA
84074556 TTTTTATTTTTAA
1 TTTTTATTTTTAA
84074569 TTTT
1 TTTT
84074573 ACTTTTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTTATTTTTAA
Found at i:84079803 original size:3 final size:3
Alignment explanation
Indices: 84079795--84079823 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
84079785 TTCTCTCTGT
84079795 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
84079824 GACATTCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:84082347 original size:12 final size:12
Alignment explanation
Indices: 84082321--84082354 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
84082311 AGGGACCTAA
84082321 TTGTAAAA-G-G
1 TTGTAAAATGTG
84082331 TTGTAAAATGTG
1 TTGTAAAATGTG
84082343 TTGTAAAATGTG
1 TTGTAAAATGTG
84082355 GATAAATGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 8 0.36
11 1 0.05
12 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.38
Consensus pattern (12 bp):
TTGTAAAATGTG
Found at i:84083345 original size:27 final size:27
Alignment explanation
Indices: 84083307--84083360 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
84083297 GTAAGGTTTG
*
84083307 CTTATTTCTTACATATAGACTTTCTAA
1 CTTATTTCTTACATATAGACTTACTAA
84083334 CTTATTTCTTACATATAGACTTACTAA
1 CTTATTTCTTACATATAGACTTACTAA
84083361 GCTATATAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.46
Consensus pattern (27 bp):
CTTATTTCTTACATATAGACTTACTAA
Found at i:84084674 original size:48 final size:48
Alignment explanation
Indices: 84084618--84084723 Score: 151
Period size: 48 Copynumber: 2.2 Consensus size: 48
84084608 CCATATTAAC
* * *
84084618 CCGCACACATAGTGCCTTAGC-AATCCACACATGTATTGACATTCAAAT
1 CCGCACACATAGTGCCATA-CAAATCCACACATATAGTGACATTCAAAT
* *
84084666 CCGCACACATAGTGCCATACAAATCCGCACATATAGTGCCATTCAAAT
1 CCGCACACATAGTGCCATACAAATCCACACATATAGTGACATTCAAAT
84084714 CCGCACACAT
1 CCGCACACAT
84084724 TGAGCCAAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
47 1 0.02
48 51 0.98
ACGTcount: A:0.34, C:0.32, G:0.12, T:0.22
Consensus pattern (48 bp):
CCGCACACATAGTGCCATACAAATCCACACATATAGTGACATTCAAAT
Found at i:84084730 original size:24 final size:24
Alignment explanation
Indices: 84084590--84084723 Score: 121
Period size: 24 Copynumber: 5.6 Consensus size: 24
84084580 CAAAGCAAGG
* *
84084590 AAATTCGCACCCATAGTGCCATAT-
1 AAATCCGCACACATAGTGCCAT-TC
* *
84084614 TAACCCGCACACATAGTGCC-TT-
1 AAATCCGCACACATAGTGCCATTC
* ** * *
84084636 AGCAATCCACACATGTATTGACATTC
1 A--AATCCGCACACATAGTGCCATTC
*
84084662 AAATCCGCACACATAGTGCCATAC
1 AAATCCGCACACATAGTGCCATTC
*
84084686 AAATCCGCACATATAGTGCCATTC
1 AAATCCGCACACATAGTGCCATTC
84084710 AAATCCGCACACAT
1 AAATCCGCACACAT
84084724 TGAGCCAAAG
Statistics
Matches: 86, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 81 0.94
25 2 0.02
26 1 0.01
ACGTcount: A:0.34, C:0.31, G:0.12, T:0.22
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCCATTC
Found at i:84091905 original size:24 final size:24
Alignment explanation
Indices: 84091801--84091915 Score: 85
Period size: 24 Copynumber: 4.9 Consensus size: 24
84091791 TCAAGCAAGG
* * *
84091801 AAATTCGCACCCATAGTGCCATAT
1 AAATCCGCACACATAGTGCCATAC
* *
84091825 TAA-CCTGCACACATAGTGCCTTAGC
1 AAATCC-GCACACATAGTGCCATA-C
* ** * * *
84091850 -AATCCACACAGGTATTGACATTC
1 AAATCCGCACACATAGTGCCATAC
84091873 AAAT-C-CACACATAGTGCCATAC
1 AAATCCGCACACATAGTGCCATAC
84091895 AAATCCGCACACATAGTGCCA
1 AAATCCGCACACATAGTGCCA
84091916 AAGTCATTTC
Statistics
Matches: 68, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
22 16 0.24
23 4 0.06
24 46 0.68
25 2 0.03
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.22
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCCATAC
Found at i:84092362 original size:14 final size:14
Alignment explanation
Indices: 84092343--84092373 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
84092333 ATTACTTCAA
84092343 ATAAACACACATAT
1 ATAAACACACATAT
*
84092357 ATAAACACATATAT
1 ATAAACACACATAT
84092371 ATA
1 ATA
84092374 TTTGTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26
Consensus pattern (14 bp):
ATAAACACACATAT
Found at i:84098342 original size:40 final size:40
Alignment explanation
Indices: 84098249--84098472 Score: 249
Period size: 40 Copynumber: 5.6 Consensus size: 40
84098239 TATTCGAATG
*
84098249 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
84098290 ATAACC-GACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
84098329 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
84098369 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
84098409 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
84098449 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
84098473 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 21, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
39 9 0.06
40 141 0.90
41 6 0.04
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:84098389 original size:80 final size:79
Alignment explanation
Indices: 84098249--84098508 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 79
84098239 TATTCGAATG
* * * * *
84098249 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACC-GACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
* *
84098313 ATTCGTGCGAGTTGCT
65 ATT-GTGCAAGTAGCT
* * *
84098329 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
84098394 TTTGTGCTAG-CGACT
66 -TTGTGCAAGTAG-CT
* * * * *
84098409 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
*
84098474 TTGTGCAAGTAGTT
66 TTGTGCAAGTAGCT
84098488 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
84098509 ATTTCTTGAG
Statistics
Matches: 153, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
78 13 0.08
79 25 0.16
80 113 0.74
81 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTGTGCAAGTAGCT
Found at i:84098462 original size:120 final size:119
Alignment explanation
Indices: 84098249--84098508 Score: 314
Period size: 120 Copynumber: 2.2 Consensus size: 119
84098239 TATTCGAATG
* * *
84098249 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGACTAAGATCCGAAGGCA
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGACTAAGATCCGAAGGCA
* * * * *
84098314 TTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 TTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
84098369 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACC-GACTAAGAT-CCGAAGG
* * *
84098432 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
64 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
84098488 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
84098509 ATTTCTTGAG
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
118 15 0.12
119 29 0.24
120 77 0.64
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (119 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGACTAAGATCCGAAGGCA
TTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:84106522 original size:40 final size:40
Alignment explanation
Indices: 84106428--84106652 Score: 258
Period size: 40 Copynumber: 5.6 Consensus size: 40
84106418 TATTCGAATG
*
84106428 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
84106469 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
84106509 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
84106549 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
84106589 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* *
84106629 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
84106653 CTTGTGCAAG
Statistics
Matches: 158, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 1 0.01
40 127 0.80
41 29 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:84106608 original size:80 final size:80
Alignment explanation
Indices: 84106428--84106688 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
84106418 TATTCGAATG
* * * *
84106428 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
84106493 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
84106509 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
84106574 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * *
84106589 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
84106654 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
84106668 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
84106689 ATTTCTTGAG
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 95 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:84106642 original size:120 final size:120
Alignment explanation
Indices: 84106428--84106688 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
84106418 TATTCGAATG
* * *
84106428 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * * *
84106493 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * *
84106549 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
* * *
84106612 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
84106668 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAATCCCGAAG
84106689 ATTTCTTGAG
Statistics
Matches: 122, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
118 15 0.12
119 19 0.16
120 57 0.47
121 31 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (120 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:84112375 original size:93 final size:93
Alignment explanation
Indices: 84112216--84112386 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
84112206 GCCCCTAAGT
*
84112216 GAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
84112281 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
84112309 GAACTCGGACTCAACTCAACGAGTTCG-GACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
84112373 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
84112387 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84112382 original size:46 final size:47
Alignment explanation
Indices: 84112211--84112383 Score: 212
Period size: 46 Copynumber: 3.7 Consensus size: 47
84112201 AACCCGCCCC
* * *
84112211 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
* * *
84112257 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-ATTTGCATCCA
* *
84112305 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
84112350 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84112384 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.54
47 31 0.29
48 3 0.03
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTTGCATCCA
Found at i:84119842 original size:46 final size:45
Alignment explanation
Indices: 84119700--84119849 Score: 178
Period size: 46 Copynumber: 3.3 Consensus size: 45
84119690 CGCCCCTAAG
* * * *
84119700 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
* * *
84119745 TGAACTCGGACTCAACTCAACGAGTTCGGAGCCTAGTTACAT-C-TCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA--C-ATTTGCATCCATAA
*
84119791 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
84119836 GTGAACTCGGACTC
1 -TGAACTCGGACTC
84119850 CATAAGTGAA
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.07
44 2 0.02
45 30 0.34
46 43 0.49
47 2 0.02
48 4 0.05
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAA
Found at i:84119853 original size:19 final size:19
Alignment explanation
Indices: 84119829--84119868 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
84119819 GACATTTGCA
84119829 TCCATAAGTGAACTCGGAC
1 TCCATAAGTGAACTCGGAC
84119848 TCCATAAGTGAACTCGGAC
1 TCCATAAGTGAACTCGGAC
84119867 TC
1 TC
84119869 AACTCAACGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (19 bp):
TCCATAAGTGAACTCGGAC
Found at i:84124729 original size:47 final size:46
Alignment explanation
Indices: 84124610--84124736 Score: 200
Period size: 46 Copynumber: 2.7 Consensus size: 46
84124600 AACCCGCCCC
* * *
84124610 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
84124656 TAAATGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
84124702 TAAGTGAAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTG-AACTCGGACTCAACTCAACGAGTTCGGA
84124737 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
46 46 0.62
47 28 0.38
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:84124755 original size:47 final size:45
Alignment explanation
Indices: 84124612--84124755 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
84124602 CCCGCCCCTA
* ** *
84124612 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
* ** **
84124657 AAATGAACTCGGACTCAACTCAACGAGTTCGGACATT-TGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCC-T
*
84124703 AAGTGAAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTG-AACTCGGACTCAACTCAACGAGTTCGGATGTTC-ACCATCCT
84124751 AGTGA
1 AGTGA
84124756 CATGTCACTT
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
46 45 0.54
47 33 0.39
48 1 0.01
49 5 0.06
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGTTCACCATCCT
Found at i:84136367 original size:46 final size:45
Alignment explanation
Indices: 84136265--84136380 Score: 148
Period size: 46 Copynumber: 2.5 Consensus size: 45
84136255 TTCTTTAAAA
*
84136265 ATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCAGTTACGCACC
1 ATAAGTGAACTCGGACTCAACTC-ACGAGCTCGGACAGTTA-GCACC
*
84136312 ATAA-TGAACTCGGACTCAACTCACGAGTTCGGACA-TT-GCATCC
1 ATAAGTGAACTCGGACTCAACTCACGAGCTCGGACAGTTAGCA-CC
84136355 TATAAGTAGAACTCGGACTCAACTCA
1 -ATAAGT-GAACTCGGACTCAACTCA
84136381 ACCGAGTTGC
Statistics
Matches: 63, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
42 3 0.05
43 2 0.03
44 6 0.10
45 12 0.19
46 36 0.57
47 4 0.06
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.21
Consensus pattern (45 bp):
ATAAGTGAACTCGGACTCAACTCACGAGCTCGGACAGTTAGCACC
Found at i:84146675 original size:46 final size:46
Alignment explanation
Indices: 84146625--84146750 Score: 207
Period size: 46 Copynumber: 2.7 Consensus size: 46
84146615 TGGTTGAGCA
*
84146625 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
84146671 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
84146717 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
84146751 GGGCGGGTTA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
46 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:84147008 original size:19 final size:20
Alignment explanation
Indices: 84146971--84147008 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
84146961 ATAAGGTGGT
84146971 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
84146991 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
84147009 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:84149080 original size:42 final size:42
Alignment explanation
Indices: 84149021--84149175 Score: 249
Period size: 42 Copynumber: 3.7 Consensus size: 42
84149011 CACATAGCTA
* *
84149021 AGACACACGCCCGTGTTCTAGGCCGTGTGGCACACACGACTG
1 AGACACACGCCCGTGTTCTAGGCCATGTGGCACACACGGCTG
84149063 AGACACACGCCCGTGTTCTAGGCCATGTGGCACACACGGCTG
1 AGACACACGCCCGTGTTCTAGGCCATGTGGCACACACGGCTG
* *
84149105 AGACACACACCCATGTTCTAGGCCATGTGGCACACACGGCTG
1 AGACACACGCCCGTGTTCTAGGCCATGTGGCACACACGGCTG
*
84149147 AGACACACGCCCGTGTCTCT-GCCCATGTG
1 AGACACACGCCCGTGT-TCTAGGCCATGTG
84149176 TCCAATTCTG
Statistics
Matches: 105, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
42 102 0.97
43 3 0.03
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.17
Consensus pattern (42 bp):
AGACACACGCCCGTGTTCTAGGCCATGTGGCACACACGGCTG
Found at i:84154330 original size:47 final size:46
Alignment explanation
Indices: 84154245--84154410 Score: 160
Period size: 47 Copynumber: 3.6 Consensus size: 46
84154235 TCTGAACTTG
* * * *
84154245 TTGAGTTGCGTTCCGAGTTCATGA-GAATTATG-AGGCATCCGAACTCA
1 TTGAGTTGCGTTCCGAGTTCATTATG---GATGCAAGCATCCGAGCTCA
* *
84154292 TTAAGTTGCATTCCGAGTTCACTTATGGATGCAAGCATCCGAGCTCA
1 TTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAGCATCCGAGCTCA
* * * *
84154339 TTGAGTTGTGTTCTGAGTTCATTAT-GATGCAAACA-CCTGAGCTTA
1 TTGAGTTGCGTTCCGAGTTCATTATGGATGCAAGCATCC-GAGCTCA
*
84154384 TTGAGTTGCGTCCCGAGTTCATTATGG
1 TTGAGTTGCGTTCCGAGTTCATTATGG
84154411 GTGAGATTAT
Statistics
Matches: 99, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
44 2 0.02
45 37 0.37
46 8 0.08
47 49 0.49
48 2 0.02
49 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (46 bp):
TTGAGTTGCGTTCCGAGTTCATTATGGATGCAAGCATCCGAGCTCA
Found at i:84154387 original size:45 final size:45
Alignment explanation
Indices: 84154280--84154409 Score: 145
Period size: 45 Copynumber: 2.8 Consensus size: 45
84154270 AATTATGAGG
* * * * *
84154280 CATCCGAACTCATTAAGTTGCATTCCGAGTTCACTTATGGATGCAAG
1 CATCCGAGCTCATTGAGTTGCGTCCCGAGTTCA-TTAT-GATGCAAA
* * *
84154327 CATCCGAGCTCATTGAGTTGTGTTCTGAGTTCATTATGATGCAAA
1 CATCCGAGCTCATTGAGTTGCGTCCCGAGTTCATTATGATGCAAA
*
84154372 CA-CCTGAGCTTATTGAGTTGCGTCCCGAGTTCATTATG
1 CATCC-GAGCTCATTGAGTTGCGTCCCGAGTTCATTATG
84154410 GGTGAGATTA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
44 2 0.03
45 38 0.53
46 4 0.06
47 28 0.39
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (45 bp):
CATCCGAGCTCATTGAGTTGCGTCCCGAGTTCATTATGATGCAAA
Found at i:84157379 original size:15 final size:15
Alignment explanation
Indices: 84157346--84157410 Score: 62
Period size: 15 Copynumber: 4.4 Consensus size: 15
84157336 GTATCTTAGG
*
84157346 TTTCTTTATTCTAGA
1 TTTCTTTATTCTGGA
*
84157361 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
84157376 TTTC-TCAATCTTGGA
1 TTTCTTTATTC-TGGA
*
84157391 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
84157405 TTTCTT
1 TTTCTT
84157411 GTTATCTTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
14 12 0.30
15 24 0.60
16 4 0.10
ACGTcount: A:0.12, C:0.15, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:84157380 original size:30 final size:30
Alignment explanation
Indices: 84157344--84157410 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
84157334 TTGTATCTTA
* *
84157344 GGTTTCTTTATTC-TAGATTTCTTTATTCTG
1 GGTTTCTTCAATCTTAGATTTCTTTATTC-G
*
84157374 GGTTTC-TCAATCTTGGATTTCTTTATTCG
1 GGTTTCTTCAATCTTAGATTTCTTTATTCG
*
84157403 GTTTTCTT
1 GGTTTCTT
84157411 GTTATCTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
29 10 0.32
30 21 0.68
ACGTcount: A:0.12, C:0.15, G:0.15, T:0.58
Consensus pattern (30 bp):
GGTTTCTTCAATCTTAGATTTCTTTATTCG
Found at i:84160252 original size:47 final size:45
Alignment explanation
Indices: 84160201--84160292 Score: 103
Period size: 47 Copynumber: 2.0 Consensus size: 45
84160191 GAATTATGAG
84160201 GCATCAGAACTCGTTAAGTTGCATTCCGAGTTCACTTATGGATGCAA
1 GCATCAGAACTCGTTAAGTTGCATTCCGAGTTCA-TTAT-GATGCAA
* *** * **
84160248 GCATCCGTGGTCGTTGAGTTGTGTTCCGAGTTCATTATGATGCAA
1 GCATCAGAACTCGTTAAGTTGCATTCCGAGTTCATTATGATGCAA
84160293 ACACCCGAGC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
45 7 0.18
46 4 0.11
47 27 0.71
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.33
Consensus pattern (45 bp):
GCATCAGAACTCGTTAAGTTGCATTCCGAGTTCATTATGATGCAA
Found at i:84160310 original size:45 final size:45
Alignment explanation
Indices: 84160217--84160331 Score: 131
Period size: 45 Copynumber: 2.5 Consensus size: 45
84160207 GAACTCGTTA
* * * * * *
84160217 AGTTGCATTCCGAGTTCACTTATGGATGCAAGCATCCGTGGTCGTTG
1 AGTTGCGTTCCGAGTTCA-TTAT-GATGCAAACACCCGAGCTCATTG
* *
84160264 AGTTGTGTTCCGAGTTCATTATGATGCAAACACCCGAGCTTATTG
1 AGTTGCGTTCCGAGTTCATTATGATGCAAACACCCGAGCTCATTG
*
84160309 AGTTGCGTCCCGAGTTCATTATG
1 AGTTGCGTTCCGAGTTCATTATG
84160332 GGTGAGATTA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 38 0.66
46 4 0.07
47 16 0.28
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (45 bp):
AGTTGCGTTCCGAGTTCATTATGATGCAAACACCCGAGCTCATTG
Found at i:84163304 original size:15 final size:15
Alignment explanation
Indices: 84163267--84163305 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
84163257 TATCGTATCT
*
84163267 TGGGTTTCTTTATTC
1 TGGGTTTCTTTACTC
* *
84163282 TAGATTTCTTTACTC
1 TGGGTTTCTTTACTC
84163297 TGGGTTTCT
1 TGGGTTTCT
84163306 CAATCTTGGA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.10, C:0.15, G:0.18, T:0.56
Consensus pattern (15 bp):
TGGGTTTCTTTACTC
Found at i:84174635 original size:72 final size:73
Alignment explanation
Indices: 84174540--84174690 Score: 223
Period size: 72 Copynumber: 2.1 Consensus size: 73
84174530 TATGTAATGT
* * * *
84174540 GGGTTCGGGTACTGACTTTTGTGTATAAACCCATGATTAACTCACTGAGCGAGCATATCGTGTTA
1 GGGTCCGGGTACTGAATTTTGTGTATAAACCCATGAGTAACTCACTGAGCGAGCATATCATGTTA
84174605 ATGCTTTG
66 ATGCTTTG
* ***
84174613 GGGTCCGGGTACT-AATTTTGTGTATAAACTCATGAGTAACTTGTTGAGCGAGCATATCATGTTA
1 GGGTCCGGGTACTGAATTTTGTGTATAAACCCATGAGTAACTCACTGAGCGAGCATATCATGTTA
84174677 ATGCTTTG
66 ATGCTTTG
84174685 GGGTCC
1 GGGTCC
84174691 AGGTGATGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
72 58 0.83
73 12 0.17
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (73 bp):
GGGTCCGGGTACTGAATTTTGTGTATAAACCCATGAGTAACTCACTGAGCGAGCATATCATGTTA
ATGCTTTG
Found at i:84174705 original size:72 final size:72
Alignment explanation
Indices: 84174547--84174727 Score: 211
Period size: 72 Copynumber: 2.5 Consensus size: 72
84174537 TGTGGGTTCG
* * *
84174547 GGTACTGACTTTTGTGTATAAACCCATGATTAACTCACTGAGCGAGCATATCGTGTTAATGCTTT
1 GGTACTAAC-TTTGTGTATAAACCCATGAGTAACTCACTGAGCGAGCATATCATGTTAATGCTTT
*
84174612 GGGGTCCG
65 GGGGTCCA
* * ***
84174620 GGTACTAATTTTGTGTATAAACTCATGAGTAACTTGTTGAGCGAGCATATCATGTTAATGCTTTG
1 GGTACTAACTTTGTGTATAAACCCATGAGTAACTCACTGAGCGAGCATATCATGTTAATGCTTTG
84174685 GGGTCCA
66 GGGTCCA
** * * *
84174692 GGTGA-TGGCTTTGTGTACAAACCCGTGAGTAGCTCA
1 GGT-ACTAACTTTGTGTATAAACCCATGAGTAACTCA
84174728 AATGCGGGCA
Statistics
Matches: 89, Mismatches: 18, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
72 81 0.91
73 8 0.09
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (72 bp):
GGTACTAACTTTGTGTATAAACCCATGAGTAACTCACTGAGCGAGCATATCATGTTAATGCTTTG
GGGTCCA
Found at i:84196108 original size:39 final size:39
Alignment explanation
Indices: 84196006--84196229 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 39
84195996 TTGAATGATG
* *
84196006 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
84196045 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
84196086 TCCGGGCTAAGCTCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
84196125 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
84196164 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
84196203 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
84196230 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 72 0.45
40 77 0.48
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:84196192 original size:79 final size:79
Alignment explanation
Indices: 84196006--84196229 Score: 251
Period size: 79 Copynumber: 2.8 Consensus size: 79
84195996 TTGAATGATG
* * * *
84196006 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
84196068 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
* *
84196086 TCCGGGCTAAGCTCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
*
84196149 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * * *
84196164 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
84196229 G
65 G
84196230 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 35 0.28
79 54 0.43
80 35 0.28
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:84196251 original size:79 final size:78
Alignment explanation
Indices: 84196013--84196262 Score: 242
Period size: 79 Copynumber: 3.2 Consensus size: 78
84196003 ATGTCCGGGC
* * * *
84196013 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
84196076 AGATACTAATTCCGGGC
64 AGATACTAA-TCC-GGT
* *
84196093 TAAG-CTCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA
* *
84196155 GTTACTAAATCTGGGT
65 GATACT-AATC-CGGT
* * **
84196171 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
84196236 -TAGCTATATCCGGT
66 ATA-CTA-ATCCGGT
* *
84196250 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
84196263 TACGTGATTT
Statistics
Matches: 142, Mismatches: 18, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
78 32 0.23
79 75 0.53
80 35 0.25
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
ATACTAATCCGGT
Found at i:84200724 original size:47 final size:46
Alignment explanation
Indices: 84200603--84200735 Score: 194
Period size: 46 Copynumber: 2.9 Consensus size: 46
84200593 ATAATCTCAC
* * *
84200603 CCATAATGAACTCGAAACGCAACTCAACGAGCTCGGGTGTTTGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGATGCTTGCAT
* *
84200649 CCATAATGAACTCGGAACACAACTCAACGAGCTCAGATGCTTGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGATGCTTGCAT
* *
84200695 CCATAAGTGAACTCGGAATGCAACTCAACGAGTTCGGATGC
1 CCATAA-TGAACTCGGAACGCAACTCAACGAGCTCGGATGC
84200736 CTCATAATTC
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
46 47 0.61
47 30 0.39
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGCTCGGATGCTTGCAT
Found at i:84207480 original size:17 final size:17
Alignment explanation
Indices: 84207458--84207491 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
84207448 TTAGTAAGTT
84207458 CATATGAAAAAAATAAG
1 CATATGAAAAAAATAAG
84207475 CATATGAAAAAAATAAG
1 CATATGAAAAAAATAAG
84207492 TAATTTATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (17 bp):
CATATGAAAAAAATAAG
Done.