Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 248 of 345
Found at i:84208645 original size:72 final size:72
Alignment explanation
Indices: 84208569--84208708 Score: 253
Period size: 72 Copynumber: 1.9 Consensus size: 72
84208559 CAGCATCCGG
* *
84208569 ACCCCAAAGCATTAACATGATATGCTCGCTCAGTGAGTTTCTCACGGGTTTATACACAAAGTCAG
1 ACCCCAAAGCATTAACATGATATGCTCGCTCAGTGAGTTACTCACGAGTTTATACACAAAGTCAG
84208634 TACTCGA
66 TACTCGA
*
84208641 ACCCCAAAGCATTAACATGATATGCTCGCTCAGTGAGTTACTCACGAGTTTATACACACAGTCAG
1 ACCCCAAAGCATTAACATGATATGCTCGCTCAGTGAGTTACTCACGAGTTTATACACAAAGTCAG
84208706 TAC
66 TAC
84208709 GCAGACCCAC
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (72 bp):
ACCCCAAAGCATTAACATGATATGCTCGCTCAGTGAGTTACTCACGAGTTTATACACAAAGTCAG
TACTCGA
Found at i:84214791 original size:50 final size:49
Alignment explanation
Indices: 84214669--84214854 Score: 214
Period size: 50 Copynumber: 3.8 Consensus size: 49
84214659 CGAAGCTATC
* * * *
84214669 TGATACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-TCAACA-A
1 TGATACACGTAGTAGCCTACACTTAGTACTACACACGCGACTCAACATA
* * * *
84214716 TCCGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTCATCATT
1 T--GATACACGTAGTAGCCTACACTTAGTACTACACACGCGA-CTCAACATA
* * *
84214768 TGATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACTTAACAGTA
1 TGATACACGTAGTAGCCTACACTTAGTACTACACACGCGACTCAACA-TA
*
84214818 TGATACACGTAGTAGCCTACACTTAGTGCTACACACG
1 TGATACACGTAGTAGCCTACACTTAGTACTACACACG
84214855 TGTATTCACA
Statistics
Matches: 115, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
47 1 0.01
49 38 0.33
50 70 0.61
51 5 0.04
52 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (49 bp):
TGATACACGTAGTAGCCTACACTTAGTACTACACACGCGACTCAACATA
Found at i:84218709 original size:19 final size:20
Alignment explanation
Indices: 84218685--84218722 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
84218675 GGTACCACCA
84218685 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
84218704 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
84218723 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:84219013 original size:46 final size:46
Alignment explanation
Indices: 84218946--84219115 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
84218936 AACCCACCCC
* *
84218946 TAAGTGAACTCGGACTCAACTCAACGAGCTCTGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCTGACGTTCGCATCCA
* *
84218992 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC---TGAC--GTTCGCATCCA
* * * *
84219040 TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCTGACGTTCGCATCCA
*
84219085 TAGGTGAACTCGGACTCAACTCAACGAGTTC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC
84219116 GGATGCTCAA
Statistics
Matches: 103, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 1 0.01
46 56 0.54
47 26 0.25
48 2 0.02
49 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCTGACGTTCGCATCCA
Found at i:84219063 original size:93 final size:93
Alignment explanation
Indices: 84218951--84219121 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
84218941 ACCCCTAAGT
* * *
84218951 GAACTCGGACTCAACTCAACGAGCTCTGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84219016 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
84219044 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
84219109 CGAGTTCGGATGC
66 CGAGTTCGGATGC
84219122 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84219575 original size:30 final size:30
Alignment explanation
Indices: 84219541--84219600 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
84219531 ATTTAATACG
84219541 AACTTTGGAAAAAGTACACTTTTGCCCCTA
1 AACTTTGGAAAAAGTACACTTTTGCCCCTA
* * * *
84219571 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAAGTACACTTTTGCCCCTA
84219601 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (30 bp):
AACTTTGGAAAAAGTACACTTTTGCCCCTA
Found at i:84227477 original size:28 final size:28
Alignment explanation
Indices: 84227437--84227543 Score: 124
Period size: 28 Copynumber: 3.8 Consensus size: 28
84227427 GCAATCAAAT
* *
84227437 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
*
84227465 ATGGCACTTAGTGTACGAAATATTAAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
** *
84227493 ATGGCACTTAGTGTGTGAGATATTGAGA
1 ATGGCACTTAGTGTACGAAATATTGAGA
* * * *
84227521 ATGACACTTCGTGTGCAAAATAT
1 ATGGCACTTAGTGTACGAAATAT
84227544 CGAATGATTC
Statistics
Matches: 67, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 67 1.00
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTACGAAATATTGAGA
Found at i:84227858 original size:40 final size:40
Alignment explanation
Indices: 84227759--84227863 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
84227749 GGGCTTCAAG
* * *
84227759 CCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTG-ATGAATTCAGACTTAAAA
* *** * **
84227800 TCTAGCAGGCTTCGTGCCGGTGATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
84227840 CCTAGCAGGCTAAATGCCGGTGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
84227864 TTGATAAAAG
Statistics
Matches: 50, Mismatches: 14, Indels: 1
0.77 0.22 0.02
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (40 bp):
CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
Found at i:84232257 original size:6 final size:6
Alignment explanation
Indices: 84232242--84232365 Score: 104
Period size: 6 Copynumber: 20.3 Consensus size: 6
84232232 ATTGAATCCA
* * * * *
84232242 TTTATC TTTATG TTTATT TTTATTTT TTTATC TTTATT TTTATT TTTCTC
1 TTTATT TTTATT TTTATT TTTA--TT TTTATT TTTATT TTTATT TTTATT
* ** * * *
84232292 TTTATG TTTATT TTTAGG TTTATT ATTATT TTTCTT TTTATG TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* * *
84232340 ATTATT TTTCTT TTTATG TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
84232366 GTTTTCATAT
Statistics
Matches: 91, Mismatches: 25, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
6 85 0.93
8 6 0.07
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:84232277 original size:20 final size:20
Alignment explanation
Indices: 84232248--84232306 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
84232238 TCCATTTATC
*
84232248 TTTATGTTTATTTTTATTTT
1 TTTATCTTTATTTTTATTTT
84232268 TTTATCTTTATTTTTA--TT
1 TTTATCTTTATTTTTATTTT
* *
84232286 TTTCTCTTTATGTTTATTTT
1 TTTATCTTTATTTTTATTTT
84232306 T
1 T
84232307 AGGTTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 16 0.47
20 18 0.53
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (20 bp):
TTTATCTTTATTTTTATTTT
Found at i:84232293 original size:18 final size:18
Alignment explanation
Indices: 84232242--84232389 Score: 100
Period size: 18 Copynumber: 8.1 Consensus size: 18
84232232 ATTGAATCCA
* *
84232242 TTTATCTTTATGTTTATT
1 TTTATTTTTATCTTTATT
84232260 TTTATTTTTTTATCTTTATT
1 TTTA--TTTTTATCTTTATT
* *
84232280 TTTATTTTTCTCTTTATG
1 TTTATTTTTATCTTTATT
**
84232298 TTTATTTTTAGGTTTATT
1 TTTATTTTTATCTTTATT
* * * *
84232316 ATTATTTTTCTTTTTATG
1 TTTATTTTTATCTTTATT
* * *
84232334 TTTATTATTATTTTTCTT
1 TTTATTTTTATCTTTATT
* *
84232352 TTTATGTTTAT-TTTGTT
1 TTTATTTTTATCTTTATT
* *
84232369 TTCATATTTTAAACTTTATT
1 TT--TATTTTTATCTTTATT
84232389 T
1 T
84232390 CAATTATTAT
Statistics
Matches: 100, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
17 7 0.07
18 65 0.65
19 6 0.06
20 22 0.22
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.73
Consensus pattern (18 bp):
TTTATTTTTATCTTTATT
Found at i:84232320 original size:24 final size:23
Alignment explanation
Indices: 84232242--84232365 Score: 119
Period size: 24 Copynumber: 5.3 Consensus size: 23
84232232 ATTGAATCCA
84232242 TTTATCTTTATGTTTATTTTTA--
1 TTTAT-TTTATGTTTATTTTTATG
* *
84232264 TTT-TTTTATCTTTATTTTTATT
1 TTTATTTTATGTTTATTTTTATG
* *
84232286 TTTCTCTTTATGTTTATTTTTAGG
1 TTTAT-TTTATGTTTATTTTTATG
* *
84232310 TTTATTATTATTTTTCTTTTTATG
1 TTTATT-TTATGTTTATTTTTATG
* *
84232334 TTTATTATTATTTTTCTTTTTATG
1 TTTATT-TTATGTTTATTTTTATG
84232358 TTTATTTT
1 TTTATTTT
84232366 GTTTTCATAT
Statistics
Matches: 89, Mismatches: 8, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.17
21 1 0.01
22 6 0.07
23 4 0.04
24 63 0.71
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.75
Consensus pattern (23 bp):
TTTATTTTATGTTTATTTTTATG
Found at i:84235395 original size:27 final size:27
Alignment explanation
Indices: 84235376--84235475 Score: 112
Period size: 27 Copynumber: 3.6 Consensus size: 27
84235366 ATATATTAAG
*
84235376 TCCGCACACTCAGTGCTATATAATCAA
1 TCCGCACACTTAGTGCTATATAATCAA
84235403 -CTCGCACACTTAGTGCTATATAATCAA
1 TC-CGCACACTTAGTGCTATATAATCAA
* * *
84235430 ACTCGCACACTTAGTGCTATACAATTTAAA
1 TC-CGCACACTTAGTGCTATATAA--TCAA
*
84235460 CCCGCACACTTAGTGC
1 TCCGCACACTTAGTGC
84235476 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
26 1 0.02
27 24 0.37
28 22 0.34
29 14 0.22
30 4 0.06
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (27 bp):
TCCGCACACTTAGTGCTATATAATCAA
Found at i:84235441 original size:28 final size:28
Alignment explanation
Indices: 84235378--84235475 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
84235368 ATATTAAGTC
*
84235378 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
84235405 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
84235433 CGCACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
84235462 CGCACACTTAGTGC
1 CGCACACTTAGTGC
84235476 CAATCTCATG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
27 22 0.34
28 24 0.37
29 19 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:84253337 original size:21 final size:21
Alignment explanation
Indices: 84253311--84253351 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
84253301 AACTTGATTC
84253311 AATTAAAAAAATTAAATTTTA
1 AATTAAAAAAATTAAATTTTA
** *
84253332 AATTAATTAAATTGAATTTT
1 AATTAAAAAAATTAAATTTT
84253352 GCTTACTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (21 bp):
AATTAAAAAAATTAAATTTTA
Found at i:84265527 original size:43 final size:45
Alignment explanation
Indices: 84265344--84266346 Score: 256
Period size: 43 Copynumber: 22.6 Consensus size: 45
84265334 TATCATCAGC
* *
84265344 CTTATCTTCACTGAGCAGGAGTGGAACAGGCT-AAATAC-CAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGAGAT
* * * **
84265387 CTTATCTTCACTGAGCAGGAGTGAAGCA-GATCGAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACT-GAG-AT
* * * ** * * *
84265433 CTTATCTCCAC-GTA-CCGGCGATGGAGCAGATTCCAAT-CATCAG-C
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGGCTCAAATAC-TGAGAT
*
84265477 CTTATCTTCACTAAGCAGGAGTGGAGCAGGCT-AAATACT-AGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGAGAT
** * * * ** *
84265520 CTTATCTTCGTTGAGCATGAGCGGAGCA-GATCAAATTTTGGTAAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACT-G-AGAT
* * * ** * * *
84265566 CTTATCTCCA-TGTATC-GGCAATGGAGCAGATTTCAACTAC-CAG-C
1 CTTATCTTCACTG-AGCAGG-AGTGGAGCAG-GCTCAAATACTGAGAT
* *
84265610 CTTATCTTCACTGAGCAGGAGTGGAGTAGGCT-ATATACT-AGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGAGAT
** *** * **
84265653 CTTATCTTTGCTGAGCAGGAGCAAAGCA-GATCAAATTTTGATGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGA-G-AT
* * * * * ** * * *
84265699 CTTATCTCCA-TGTATC-GGCAATGGCGTAGATTCCAAT-CATAAG-C
1 CTTATCTTCACTG-AGCAGG-AGTGGAGCAGGCTCAAATAC-TGAGAT
*
84265743 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAATAC-CAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGAGAT
* * * **
84265786 CTTATCTTCACTGAGCAGGAGTGAAGCA-GATCGAATTTTAGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACT-GAG-AT
* * * * ** * * *
84265832 CTTAGCTCCAC-GTA-CTGGCGATGGAGCAGATTCCAAT-CATAAG-C
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGGCTCAAATAC-TGAGAT
* * *
84265876 CTTATTTTCACTGAGCAAGAGTGGAGCAGGCT-AAATAC-CAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGAGAT
* * * * ** * **
84265919 CTTATCTTCACTGAGTAAGAGTGAAACA-AATCGAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACT-GAG-AT
* * * ** * * *
84265965 CTTATCTCCA-TGTACCGACGA-TGGAGCAGATTCCAAT-CATAAG-C
1 CTTATCTTCACTG-AGC-AGGAGTGGAGCAGGCTCAAATAC-TGAGAT
*
84266009 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAATAC-CAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGAGAT
* * * **
84266052 CTTATCTTCACTGAGTAGGAGTGAAGCA-GATCAAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACT-GAG-AT
* * * ** * * *
84266098 CTTATCTCCAC-GTA-CCGGCGATGGAGCAGATTCCAAT-CATAAG-C
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGGCTCAAATAC-TGAGAT
*
84266142 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAATAC-CAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGAGAT
* * * **
84266185 CTTATCTTCACTGAGCAGGAGTGAAGCA-GATCGAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACT-GAG-AT
* * *** * * *
84266231 CTTATCTCCA-TGTA-CTAGCGA-TGGAACAAATTCCAAT-CATCAG-C
1 CTTATCTTCACTG-AGC-AG-GAGTGGAGCAGGCTCAAATAC-TGAGAT
* *
84266275 CTTATCTTCACTAAGCAGGAGTGGAGCAGGCT-AAATAC-CAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGAGAT
*
84266318 CTTATCTTCACTGAGCAGGAGTGAAGCAG
1 CTTATCTTCACTGAGCAGGAGTGGAGCAG
84266347 ATCAAATTTT
Statistics
Matches: 674, Mismatches: 200, Indels: 172
0.64 0.19 0.16
Matches are distributed among these distances:
42 32 0.05
43 252 0.37
44 142 0.21
45 63 0.09
46 137 0.20
47 43 0.06
48 5 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (45 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACTGAGAT
Found at i:84265573 original size:133 final size:133
Alignment explanation
Indices: 84265335--84266684 Score: 1864
Period size: 133 Copynumber: 10.1 Consensus size: 133
84265325 GATTACAGAT
*
84265335 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAACAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
*
84265400 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
84265465 CCA
131 CCA
* * **
84265468 ATCATCAGCCTTATCTTCACTAAGCAGGAGTGGAGCAGGCTAAATACTAGATCTTATCTTCGTTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * * * * *
84265533 AGCATGAGCGGAGCAGATCAAATTTTGGTA-AATCTTATCTCCATGTATCGGCAATGGAGCAGAT
66 AGCAGGAGTGAAGCAGATCAAATTTTGG-AGAATCTTATCTCCACGTACCGGCGATGGAGCAGAT
*
84265597 TTCA
130 TCCA
* * * * **
84265601 A-CTACCAGCCTTATCTTCACTGAGCAGGAGTGGAGTAGGCTATATACTAGATCTTATCTTTGCT
1 ATC-ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACT
** * * * * *
84265665 GAGCAGGAGCAAAGCAGATCAAATTTT-GATGAATCTTATCTCCATGTATCGGCAATGGCGTAGA
65 GAGCAGGAGTGAAGCAGATCAAATTTTGGA-GAATCTTATCTCCACGTACCGGCGATGGAGCAGA
84265729 TTCCA
129 TTCCA
*
84265734 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * * *
84265799 AGCAGGAGTGAAGCAGATCGAATTTTAGAGAATCTTAGCTCCACGTACTGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
84265864 CCA
131 CCA
* * *
84265867 ATCATAAGCCTTATTTTCACTGAGCAAGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * * * * * *
84265932 AGTAAGAGTGAAACAAATCGAATTTTGGAGAATCTTATCTCCATGTACCGACGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
84265997 CCA
131 CCA
*
84266000 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
*
84266065 AGTAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
84266130 CCA
131 CCA
*
84266133 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * ** * *
84266198 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCATGTACTAGCGATGGAACAAATT
66 AGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
84266263 CCA
131 CCA
*
84266266 ATCATCAGCCTTATCTTCACTAAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
**
84266331 AGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTA-CTACGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
84266395 CCA
131 CCA
* * * *
84266398 ATCACCAGCTTTATCTTCACTGAGCAGGAATGGAGCAGGCTAAATGTACCATG-TCTTATCTTCG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAA--TACCA-GATCTTATCTTCA
* * * * * * * * **
84266462 CTGAGCAAGAGCGGAGCTGATCAAATTTTTGTGAATCTTATCTCCATGTATCGGTAATGGAGCAG
63 CTGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAG
* *
84266527 GTTTCA
128 ATTCCA
** * * * * *
84266533 GCCACCAACCTTATCTTCACTGAGCAGGAGCGAAGCAGGCTAAATATACCAGATCTTATCTTCAT
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AA-ATACCAGATCTTATCTTCAC
* * *
84266598 TAAGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGACGATGGAGCAGA
64 TGAGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGA
84266663 TTCCA
129 TTCCA
* *
84266668 ATCATTAGCTTTATCTT
1 ATCATCAGCCTTATCTT
84266685 TACTAAGTAG
Statistics
Matches: 1079, Mismatches: 125, Indels: 24
0.88 0.10 0.02
Matches are distributed among these distances:
131 1 0.00
132 57 0.05
133 825 0.76
134 63 0.06
135 130 0.12
136 2 0.00
137 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (133 bp):
ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
AGCAGGAGTGAAGCAGATCAAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
CCA
Found at i:84266785 original size:85 final size:85
Alignment explanation
Indices: 84266687--84266969 Score: 440
Period size: 85 Copynumber: 3.3 Consensus size: 85
84266677 TTTATCTTTA
* *
84266687 CTAAGTAGTAGGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAATGGTGGAGCAGGT
1 CTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
*
84266752 CGAAGATTTGCCTTAACCCC
66 CGAAGATTCGCCTTAACCCC
* *
84266772 CTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATTCTGGCTCTCCGAGTAGTGGTGGAGCAGGT
1 CTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
*
84266837 CGAAGATCCGCCTTAACCCC
66 CGAAGATTCGCCTTAACCCC
* * * *
84266857 CTAAGCAGTAGGGTAACAGGCTAAAATTTACAAATCCTAGCTCTCCGAGCAGTGGTAGAGTAGGT
1 CTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
* *
84266922 CGAAGACTCGCCTTAATCCC
66 CGAAGATTCGCCTTAACCCC
* *
84266942 CTAAGTAGTAGGGTAACAGGTTAAAATT
1 CTAAGCAGTAGGGTAACAGGCTAAAATT
84266970 GCAGATCTTA
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 181 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (85 bp):
CTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
CGAAGATTCGCCTTAACCCC
Found at i:84270219 original size:16 final size:16
Alignment explanation
Indices: 84270198--84270267 Score: 95
Period size: 16 Copynumber: 4.4 Consensus size: 16
84270188 TTTGGTTCAC
* *
84270198 TGTAATAGAATAGTGT
1 TGTAATGGAATAGAGT
* *
84270214 TGTAATTGAATAGAGC
1 TGTAATGGAATAGAGT
84270230 TGTAATGGAATAGAGT
1 TGTAATGGAATAGAGT
*
84270246 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGT
84270262 TGTAAT
1 TGTAAT
84270268 CAGTAATTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.37, C:0.03, G:0.27, T:0.33
Consensus pattern (16 bp):
TGTAATGGAATAGAGT
Found at i:84270234 original size:32 final size:32
Alignment explanation
Indices: 84270197--84270267 Score: 115
Period size: 32 Copynumber: 2.2 Consensus size: 32
84270187 ATTTGGTTCA
* *
84270197 CTGTAATAGAATAGTGTTGTAATTGAATAGAG
1 CTGTAATAGAATAGAGTTGTAATGGAATAGAG
*
84270229 CTGTAATGGAATAGAGTTGTAATGGAATAGAG
1 CTGTAATAGAATAGAGTTGTAATGGAATAGAG
84270261 CTGTAAT
1 CTGTAAT
84270268 CAGTAATTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.37, C:0.04, G:0.27, T:0.32
Consensus pattern (32 bp):
CTGTAATAGAATAGAGTTGTAATGGAATAGAG
Found at i:84270335 original size:44 final size:46
Alignment explanation
Indices: 84270249--84270342 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
84270239 ATAGAGTTGT
84270249 AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
* ***
84270295 AATGGAGTAGAGCTGTAAT-AG-AATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
84270339 AATG
1 AATG
84270343 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 24 0.55
45 2 0.05
46 18 0.41
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.34
Consensus pattern (46 bp):
AATGGAATAGAGCTGTAATCAGTAATTCAACTGTTTGGTTGAATGG
Found at i:84270457 original size:25 final size:24
Alignment explanation
Indices: 84270413--84270462 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
84270403 ATTGATAGAT
84270413 GATTATTGTTATTAAATTTTAATAA
1 GATTATTGTTA-TAAATTTTAATAA
84270438 GATTATTGTTA-AATATTTTTAATAA
1 GATTATTGTTATAA-A-TTTTAATAA
84270463 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 2 0.09
24 1 0.04
25 20 0.87
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (24 bp):
GATTATTGTTATAAATTTTAATAA
Found at i:84270523 original size:24 final size:21
Alignment explanation
Indices: 84270502--84270560 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 21
84270492 TAACATAATT
84270502 ATTATTAAATATAATTTAATAA
1 ATTATT-AATATAATTTAATAA
* *
84270524 AATAAT-ATATAATTTAATAA
1 ATTATTAATATAATTTAATAA
84270544 CATTATTAATATAATTT
1 -ATTATTAATATAATTT
84270561 TTAATAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 14 0.45
21 4 0.13
22 13 0.42
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTATTAATATAATTTAATAA
Found at i:84270563 original size:24 final size:24
Alignment explanation
Indices: 84270536--84270581 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
84270526 TAATATATAA
*
84270536 TTTAATAA-CATTATTAATATAATT
1 TTTAATAATAATT-TTAATATAATT
84270560 TTTAATAATAATTTTAATATAA
1 TTTAATAATAATTTTAATATAA
84270582 AATTATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
TTTAATAATAATTTTAATATAATT
Found at i:84273066 original size:40 final size:40
Alignment explanation
Indices: 84273022--84273099 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
84273012 GTTATACTGT
84273022 AGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGATGC
1 AGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGATGC
84273062 AGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGAT
1 AGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGAT
84273100 AGAGTTCCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.33
Consensus pattern (40 bp):
AGATACTCAAGCAAATAAGTTATTTTGCCAATTTAGATGC
Found at i:84278097 original size:56 final size:56
Alignment explanation
Indices: 84278026--84278139 Score: 201
Period size: 56 Copynumber: 2.0 Consensus size: 56
84278016 ACCTTCATAA
*
84278026 CCCTCCATCTAAACTTTTGTTTTTCTTATAAATAGGTGATCTTTACCATTACCAAG
1 CCCTCCATCTAAACTTTTGTTTTTCTTATAAATAGGTCATCTTTACCATTACCAAG
* *
84278082 CCCTCCATCTCAACTTTTGTTTTTCTTATAAATAGGTCATTTTTACCATTACCAAG
1 CCCTCCATCTAAACTTTTGTTTTTCTTATAAATAGGTCATCTTTACCATTACCAAG
84278138 CC
1 CC
84278140 AATTAAGCTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.41
Consensus pattern (56 bp):
CCCTCCATCTAAACTTTTGTTTTTCTTATAAATAGGTCATCTTTACCATTACCAAG
Found at i:84279595 original size:6 final size:6
Alignment explanation
Indices: 84279581--84279614 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
84279571 AGGTTCCCAA
* *
84279581 AAATAG AAATTG AAATAG AAATTG AAATAG AAAT
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAAT
84279615 GGTCCATTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24
Consensus pattern (6 bp):
AAATAG
Found at i:84279598 original size:12 final size:12
Alignment explanation
Indices: 84279581--84279614 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
84279571 AGGTTCCCAA
84279581 AAATAGAAATTG
1 AAATAGAAATTG
84279593 AAATAGAAATTG
1 AAATAGAAATTG
84279605 AAATAGAAAT
1 AAATAGAAAT
84279615 GGTCCATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24
Consensus pattern (12 bp):
AAATAGAAATTG
Found at i:84280295 original size:17 final size:17
Alignment explanation
Indices: 84280273--84280306 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
84280263 TAAAAGAGAG
84280273 AAAACTTTTTCTAGTTT
1 AAAACTTTTTCTAGTTT
*
84280290 AAAACTTTTTTTAGTTT
1 AAAACTTTTTCTAGTTT
84280307 TGTGTTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.56
Consensus pattern (17 bp):
AAAACTTTTTCTAGTTT
Found at i:84283552 original size:23 final size:23
Alignment explanation
Indices: 84283526--84283570 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
84283516 CAATTTATAA
84283526 ATATTTTATAGTATA-AAATATTG
1 ATATTTTA-AGTATATAAATATTG
*
84283549 ATATTTTAATTATATAAATATT
1 ATATTTTAAGTATATAAATATT
84283571 AGTACTTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (23 bp):
ATATTTTAAGTATATAAATATTG
Found at i:84288229 original size:47 final size:48
Alignment explanation
Indices: 84288161--84288480 Score: 241
Period size: 46 Copynumber: 6.8 Consensus size: 48
84288151 GTGGAGAGAC
* * *
84288161 AGTGGAAGACCATGTCAGGGACATGGCATCGGCATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCT
* * * *
84288209 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATGTA-AGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATG-AGAGCT
* * *
84288255 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACGAGATGTG-TC-
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGATGAGAGCT
* * * * * *
84288299 AGGGTAAAACCATGTTTGGGACATGGCATTGGCATGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--TGAGAGCT
* * ** ** *
84288349 AGTGTAAGACCATGTTTGGGACATGGCGTCGGTGTTGATTTTGATAG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA-GATGAGAGCT
* * *
84288397 CAGTGTAAGACCACGTCTGGGACATGGCATCGAC-TT--GATGGATGAGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGAT-GA-GAGCT
*
84288445 AGTGTAAGACCATGTCTGGGACATGGCATCGACATT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
84288481 ATACCCTATG
Statistics
Matches: 219, Mismatches: 37, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
44 7 0.03
45 16 0.07
46 65 0.30
47 49 0.22
48 16 0.07
49 34 0.16
50 31 0.14
51 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCT
Found at i:84297142 original size:4 final size:4
Alignment explanation
Indices: 84297133--84297165 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
84297123 TTACTACCAA
84297133 TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG T
84297166 TTTTTTTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:84309902 original size:107 final size:107
Alignment explanation
Indices: 84309731--84309930 Score: 278
Period size: 107 Copynumber: 1.9 Consensus size: 107
84309721 AAAGGGAAAC
* * *
84309731 AACCAAAGGTGAATGGCATCATCAGAAACGCCATTGATCTTAAATGTGTCGCAAAACTTTAGAAA
1 AACCAAAGATGAATGACATCATCAGAAACGCCATTGATCTTAAATATGTCGCAAAACTTTAGAAA
*
84309796 ATTCACCAAATTAGTATTTGGATCCTCAATGAAAATGCAAAT
66 ATTCACCAAATGAGTATTTGGATCCTCAATGAAAATGCAAAT
* * * * *
84309838 AACCGAAGATGAATGACATCATCAGAGACGCCATTGATTTTAAATAAT-TCG-TAAAGTTTCAGA
1 AACCAAAGATGAATGACATCATCAGAAACGCCATTGATCTTAAAT-ATGTCGCAAAACTTT-AGA
*
84309901 AAATTCACCAAGTGAGTATTTGGATCCTCA
64 AAATTCACCAAATGAGTATTTGGATCCTCA
84309931 TCCTGCAAAC
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
106 6 0.07
107 74 0.91
108 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (107 bp):
AACCAAAGATGAATGACATCATCAGAAACGCCATTGATCTTAAATATGTCGCAAAACTTTAGAAA
ATTCACCAAATGAGTATTTGGATCCTCAATGAAAATGCAAAT
Found at i:84310328 original size:26 final size:26
Alignment explanation
Indices: 84310299--84310355 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
84310289 GTCATAAACT
*
84310299 ATAAAAACTT-GTAAGAAGAAAACAAA
1 ATAAAAACTTAGTAACAA-AAAACAAA
* *
84310325 AT-AAAATTTAGTAACAAAAATCAAA
1 ATAAAAACTTAGTAACAAAAAACAAA
84310350 ATAAAA
1 ATAAAA
84310356 TATAAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 15 0.58
26 11 0.42
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.19
Consensus pattern (26 bp):
ATAAAAACTTAGTAACAAAAAACAAA
Found at i:84315964 original size:29 final size:29
Alignment explanation
Indices: 84315922--84316032 Score: 159
Period size: 29 Copynumber: 3.8 Consensus size: 29
84315912 TATATATGTG
* *
84315922 AATTATCGAGCACTAAGTGTGCAAAGAAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
84315951 AATTAACGAGCACTAAGTGTGCGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
** *
84315980 AATTATTAAGCACTAAGTGTGTGAAGTAA
1 AATTATCGAGCACTAAGTGTGCGAAGTAA
*
84316009 AACTATCGAGCACTAAGTGTGCGA
1 AATTATCGAGCACTAAGTGTGCGA
84316033 TCTCATTGCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.23
Consensus pattern (29 bp):
AATTATCGAGCACTAAGTGTGCGAAGTAA
Found at i:84318327 original size:42 final size:42
Alignment explanation
Indices: 84318281--84318374 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
84318271 GCATTAAATG
* *
84318281 AAAACTCATAGGAGCTGAACAGAAACCCATAAA-GGTTAATCT
1 AAAACTCATAGGAGCTAAACAGAAACCCA-AAAGGGTTAAACT
* * *
84318323 AAAACTCAGAGGAGCTAAACTGAAACCTAAAAGGGTTAAACT
1 AAAACTCATAGGAGCTAAACAGAAACCCAAAAGGGTTAAACT
*
84318365 CAAACTCATA
1 AAAACTCATA
84318375 TGAGTTAACT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 3 0.07
42 41 0.93
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.18
Consensus pattern (42 bp):
AAAACTCATAGGAGCTAAACAGAAACCCAAAAGGGTTAAACT
Found at i:84322238 original size:20 final size:20
Alignment explanation
Indices: 84322193--84322240 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
84322183 GAATTTATGA
*
84322193 TTTTGATGAATATTTTGAGC
1 TTTTGATGAATATATTGAGC
**
84322213 CATTGATGAATA-ATTGAGC
1 TTTTGATGAATATATTGAGC
84322232 TTTTTGATG
1 -TTTTGATG
84322241 TTAGTTGATA
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.27, C:0.06, G:0.21, T:0.46
Consensus pattern (20 bp):
TTTTGATGAATATATTGAGC
Found at i:84322989 original size:41 final size:42
Alignment explanation
Indices: 84322873--84323041 Score: 160
Period size: 43 Copynumber: 4.0 Consensus size: 42
84322863 TAGGATTTCT
* **
84322873 GATATGTGTTCTCGTGTAAGACCATGTCTGGGATGTTGGCATC
1 GATATGTGAT-TCGTGTAAGACCATGTCTGGGACATTGGCATC
* * *
84322916 GATATGTGGTTACATGTAAGACCATGTCTGGGACATTGGTATC
1 GATATGTGATT-CGTGTAAGACCATGTCTGGGACATTGGCATC
* * * * *
84322959 G-TATTTGATTCGTGTAAGACCCTGTTTGGGACAATGACATC
1 GATATGTGATTCGTGTAAGACCATGTCTGGGACATTGGCATC
* * * * *
84323000 GATATGTAATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 GATATGTGATT-CGTGTAAGACCATGTCTGGGACATTGGCAT
84323042 TGTACGATAT
Statistics
Matches: 100, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
41 26 0.26
42 15 0.15
43 59 0.59
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.33
Consensus pattern (42 bp):
GATATGTGATTCGTGTAAGACCATGTCTGGGACATTGGCATC
Found at i:84323235 original size:19 final size:18
Alignment explanation
Indices: 84323211--84323254 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
84323201 GATACTAATT
84323211 ATATATGATGCAAATGAAA
1 ATATATG-TGCAAATGAAA
* *
84323230 ATATATGTGTATATGAAA
1 ATATATGTGCAAATGAAA
84323248 AGTATAT
1 A-TATAT
84323255 TTGGCCAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (18 bp):
ATATATGTGCAAATGAAA
Found at i:84329585 original size:17 final size:16
Alignment explanation
Indices: 84329563--84329594 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
84329553 CGAGGTCTCA
84329563 CTACAGTTTTCAGTTTC
1 CTACAGTTTT-AGTTTC
84329580 CTACAGTTTTAGTTT
1 CTACAGTTTTAGTTT
84329595 ACTCCAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.19, C:0.19, G:0.12, T:0.50
Consensus pattern (16 bp):
CTACAGTTTTAGTTTC
Found at i:84334564 original size:41 final size:42
Alignment explanation
Indices: 84334516--84334630 Score: 135
Period size: 41 Copynumber: 2.7 Consensus size: 42
84334506 ATATGTATTC
*
84334516 TCGTGTAAGACCACGTCTGGGACGTTGGCATAG-TATTTGAT
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATAGATATGTGAT
* * ** *
84334557 TCGTGTAAGACC-CTATCTAGGACAATGGCATCGATATGTGAT
1 TCGTGTAAGACCAC-GTCTGGGACGTTGGCATAGATATGTGAT
*
84334599 TACATGTAAGACCACGTCTGGGACGTTGGCAT
1 T-CGTGTAAGACCACGTCTGGGACGTTGGCAT
84334631 TGTACAATAT
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
40 1 0.02
41 26 0.44
42 8 0.14
43 23 0.39
44 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATAGATATGTGAT
Found at i:84334822 original size:19 final size:18
Alignment explanation
Indices: 84334798--84334841 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
84334788 GATTCTAATT
84334798 ATATATGATGCAAATGAAA
1 ATATAT-ATGCAAATGAAA
* *
84334817 ATATATATGTATATGAAA
1 ATATATATGCAAATGAAA
84334835 AGTATAT
1 A-TATAT
84334842 TCGGCCAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (18 bp):
ATATATATGCAAATGAAA
Found at i:84350642 original size:129 final size:129
Alignment explanation
Indices: 84350412--84350670 Score: 455
Period size: 129 Copynumber: 2.0 Consensus size: 129
84350402 CAAAATCCTT
* * *
84350412 AGCTTCCAAAGAAGAAAACATATAAGTTTTAAAAGGAAGAACCATAAAGTATATTTTAAAAGAAG
1 AGCTTCCAAAGAAGAAAACATATAAGTTTTAAAACGAAAAAACATAAAGTATATTTTAAAAGAAG
*
84350477 AAAAAACCATCCCGACTAATCCTTCTCACAATATATATATCCAGTTTCCCCTTAGTGGAACTTG
66 AAAAAACCATCCCGACTAATCCTTCTCACAATATATATATCCAGTTTCCCCTTAGTAGAACTTG
*
84350541 AGCTTCCAAAGAAGAAAACTTATAAGTTTTAAAACGAAAAAACATAAAGTATATTTTAAAAGAAG
1 AGCTTCCAAAGAAGAAAACATATAAGTTTTAAAACGAAAAAACATAAAGTATATTTTAAAAGAAG
* *
84350606 AAAAAACCATCTCGACTAATCCTTCTCACAATATATATATCTAGTTTCCCCTTAGTAGAACTTG
66 AAAAAACCATCCCGACTAATCCTTCTCACAATATATATATCCAGTTTCCCCTTAGTAGAACTTG
84350670 A
1 A
84350671 CAAATGTCGA
Statistics
Matches: 123, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 123 1.00
ACGTcount: A:0.44, C:0.18, G:0.11, T:0.27
Consensus pattern (129 bp):
AGCTTCCAAAGAAGAAAACATATAAGTTTTAAAACGAAAAAACATAAAGTATATTTTAAAAGAAG
AAAAAACCATCCCGACTAATCCTTCTCACAATATATATATCCAGTTTCCCCTTAGTAGAACTTG
Found at i:84367079 original size:41 final size:41
Alignment explanation
Indices: 84367022--84367106 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
84367012 ATAAAATGAA
84367022 AGTATAATAGATGACCCTTGAGCTAGTATGATACAAAGATT
1 AGTATAATAGATGACCCTTGAGCTAGTATGATACAAAGATT
84367063 AGTATAATAGATGACCCTTGAGCTAGTATGATACAAAGATT
1 AGTATAATAGATGACCCTTGAGCTAGTATGATACAAAGATT
84367104 AGT
1 AGT
84367107 TTCAAAGCGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (41 bp):
AGTATAATAGATGACCCTTGAGCTAGTATGATACAAAGATT
Found at i:84377694 original size:18 final size:15
Alignment explanation
Indices: 84377659--84377689 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
84377649 CACGCCTTCA
84377659 TTTTGTTAACTCTGT
1 TTTTGTTAACTCTGT
84377674 TTTTGTTAACTCTGT
1 TTTTGTTAACTCTGT
84377689 T
1 T
84377690 GTTTTGGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.61
Consensus pattern (15 bp):
TTTTGTTAACTCTGT
Found at i:84389087 original size:42 final size:42
Alignment explanation
Indices: 84389041--84389204 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 42
84389031 TAGGGTTATG
*
84389041 TGTGATTTCGTGTAAGACCATATCTAGGATATGGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* * * * *
84389083 TGTGATTTTGTATAAGACCATGTCTGGGACATGGCATTGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
* ** * *
84389125 TGAGACATCGTGTAAGACCATAGCTGGGCTATCGGCATCGATA
1 TGTGATTTCGTGTAAGACCATATCTGGGATAT-GGCATCGATA
** *
84389168 TGTGATCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGTGATTTCGTGTAAGACCATATCTGGGATATGGCAT
84389205 TTGCATGTTA
Statistics
Matches: 98, Mismatches: 23, Indels: 2
0.80 0.19 0.02
Matches are distributed among these distances:
42 64 0.65
43 34 0.35
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
TGTGATTTCGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:84389172 original size:85 final size:84
Alignment explanation
Indices: 84389048--84389205 Score: 217
Period size: 85 Copynumber: 1.9 Consensus size: 84
84389038 ATGTGTGATT
* **** *
84389048 TCGTGTAAGACCATATCTAGGATATGGCATCGATATGTGATTTTGTATAAGACCATGTCTGGGAC
1 TCGTGTAAGACCATAGCTAGGATATGGCATCGATATGTGATCCCATATAAGACCATATCTGGGAC
84389113 ATGGCATTGATATGAGACA
66 ATGGCATTGATATGAGACA
* * *
84389132 TCGTGTAAGACCATAGCTGGGCTATCGGCATCGATATGTGATCCCATGTAAGACCATATCTGGGA
1 TCGTGTAAGACCATAGCTAGGATAT-GGCATCGATATGTGATCCCATATAAGACCATATCTGGGA
*
84389197 TATGGCATT
65 CATGGCATT
84389206 TGCATGTTAC
Statistics
Matches: 63, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
84 22 0.35
85 41 0.65
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (84 bp):
TCGTGTAAGACCATAGCTAGGATATGGCATCGATATGTGATCCCATATAAGACCATATCTGGGAC
ATGGCATTGATATGAGACA
Found at i:84405197 original size:16 final size:18
Alignment explanation
Indices: 84405169--84405202 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
84405159 TTAGAATCGG
84405169 ATTGAGAAAATT-ATTTA
1 ATTGAGAAAATTAATTTA
84405186 ATTGAG-AAATTAATTTA
1 ATTGAGAAAATTAATTTA
84405203 GTTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (18 bp):
ATTGAGAAAATTAATTTA
Found at i:84405209 original size:9 final size:9
Alignment explanation
Indices: 84405193--84405225 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
84405183 TTAATTGAGA
84405193 AATTAATTT
1 AATTAATTT
*
84405202 AGTTAATTT
1 AATTAATTT
84405211 AATTAA-TT
1 AATTAATTT
84405219 AATTAAT
1 AATTAAT
84405226 AATTATTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (9 bp):
AATTAATTT
Found at i:84405592 original size:20 final size:19
Alignment explanation
Indices: 84405554--84405594 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
84405544 AAAGTAATGA
*
84405554 AAATTTATTTTCTTAGAAT
1 AAATTTATTTTCTGAGAAT
*
84405573 AAATTATATTTTCTGGGAAT
1 AAATT-TATTTTCTGAGAAT
84405593 AA
1 AA
84405595 TAATTTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (19 bp):
AAATTTATTTTCTGAGAAT
Found at i:84407103 original size:35 final size:35
Alignment explanation
Indices: 84407036--84407115 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 35
84407026 TTATTAACTT
* * *
84407036 GTCCTTCGGGGCAACACCGTGAAGATGATATATAA
1 GTCCTTCAGGACAACACCGTGAAGACGATATATAA
* * *
84407071 GTCTTTCAGGACAACACCGTGTAA-ACGGTATATAG
1 GTCCTTCAGGACAACACCGTG-AAGACGATATATAA
84407106 GTCCTTCAGG
1 GTCCTTCAGG
84407116 GTGATACCGT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
35 35 0.95
36 2 0.05
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (35 bp):
GTCCTTCAGGACAACACCGTGAAGACGATATATAA
Found at i:84410197 original size:40 final size:40
Alignment explanation
Indices: 84410160--84410424 Score: 342
Period size: 40 Copynumber: 6.7 Consensus size: 40
84410150 GCTACTCGTT
*
84410160 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
84410200 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
84410240 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
84410280 CAAATGCCTTC-AGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* *
84410320 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
84410359 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
84410400 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
84410425 CATCATTCAA
Statistics
Matches: 199, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 34 0.17
40 149 0.75
41 14 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:84413307 original size:22 final size:19
Alignment explanation
Indices: 84413268--84413307 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 19
84413258 AATCAGAGTA
84413268 TCATATAAAATCAATCAAT
1 TCATATAAAATCAATCAAT
84413287 TCATACTAAAAGTCATATCAA
1 TCATA-TAAAA-TCA-ATCAA
84413308 ACTCATCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.28
20 5 0.28
21 3 0.17
22 5 0.28
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.30
Consensus pattern (19 bp):
TCATATAAAATCAATCAAT
Found at i:84415861 original size:38 final size:38
Alignment explanation
Indices: 84415810--84415885 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 38
84415800 AATTTAAATC
* * *
84415810 TGTATTCTTGAGTCTACAGCATATGCAAGAGCTCAGAA
1 TGTATCCTTGAGTCCACAACATATGCAAGAGCTCAGAA
*
84415848 TGTATCCTTGAGTCCATAACATATGCAAGAGCTCAGAA
1 TGTATCCTTGAGTCCACAACATATGCAAGAGCTCAGAA
84415886 CCTATTCCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (38 bp):
TGTATCCTTGAGTCCACAACATATGCAAGAGCTCAGAA
Found at i:84417286 original size:16 final size:16
Alignment explanation
Indices: 84417265--84417309 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
84417255 ATATTTAGTC
84417265 ATATAATAAATTATTA
1 ATATAATAAATTATTA
84417281 ATATAATAAA-TA-TA
1 ATATAATAAATTATTA
* *
84417295 ATTTATTAAATTATT
1 ATATAATAAATTATT
84417310 TCAATTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 10 0.40
15 4 0.16
16 11 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:84417409 original size:15 final size:15
Alignment explanation
Indices: 84417391--84417447 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
84417381 TATTCATATT
84417391 AATATTTTAATAATA
1 AATATTTTAATAATA
*
84417406 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
84417425 AATATATTAATAATA
1 AATATTTTAATAATA
*
84417440 AATGTTTT
1 AATATTTT
84417448 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:84417851 original size:32 final size:33
Alignment explanation
Indices: 84417815--84417887 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 33
84417805 CAAGTTTTCT
84417815 AAAATATTTT-TA-AGAAATC-TACCAAACAACAG
1 AAAATATTTTATACAG-AATCAT-CCAAACAACAG
* *
84417847 AAAATATTTTATACAGATTCATCCAAACACCAG
1 AAAATATTTTATACAGAATCATCCAAACAACAG
84417880 AAAATATT
1 AAAATATT
84417888 AGCTTTTCCA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
32 10 0.28
33 23 0.64
34 3 0.08
ACGTcount: A:0.51, C:0.16, G:0.05, T:0.27
Consensus pattern (33 bp):
AAAATATTTTATACAGAATCATCCAAACAACAG
Found at i:84419771 original size:17 final size:17
Alignment explanation
Indices: 84419749--84419805 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
84419739 GTGGGAATTA
84419749 AAAAAAAAGTGAAATAG
1 AAAAAAAAGTGAAATAG
84419766 AAAAAAAAGTTGAAA-AG
1 AAAAAAAAG-TGAAATAG
* *
84419783 --AAACAATTGAAATAG
1 AAAAAAAAGTGAAATAG
84419798 AAAAAAAA
1 AAAAAAAA
84419806 AAGAAAAAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
14 5 0.15
15 7 0.21
17 16 0.48
18 5 0.15
ACGTcount: A:0.72, C:0.02, G:0.14, T:0.12
Consensus pattern (17 bp):
AAAAAAAAGTGAAATAG
Found at i:84420000 original size:26 final size:26
Alignment explanation
Indices: 84419968--84420019 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
84419958 TAAAGGAATG
84419968 AGAAAGAGAA-AGACAAATATGAAAAA
1 AGAAAGAGAATA-ACAAATATGAAAAA
*
84419994 AGAAAGAGAATAACAAATATGTAAAA
1 AGAAAGAGAATAACAAATATGAAAAA
84420020 TAAATATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.17, T:0.12
Consensus pattern (26 bp):
AGAAAGAGAATAACAAATATGAAAAA
Found at i:84420119 original size:23 final size:23
Alignment explanation
Indices: 84420093--84420156 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
84420083 TAATATATAT
84420093 ATATATGAAAAATAGAGAATCAA-
1 ATATATGAAAAATAGAGAAT-AAC
* *
84420116 ATAT-GGAAAGAAAAGAGAATAAC
1 ATATATGAAA-AATAGAGAATAAC
* *
84420139 AAATATGCAAAATAGAGA
1 ATATATGAAAAATAGAGA
84420157 TACGAAAGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
22 6 0.19
23 23 0.72
24 3 0.09
ACGTcount: A:0.61, C:0.05, G:0.17, T:0.17
Consensus pattern (23 bp):
ATATATGAAAAATAGAGAATAAC
Found at i:84420194 original size:26 final size:25
Alignment explanation
Indices: 84420172--84420258 Score: 74
Period size: 25 Copynumber: 3.5 Consensus size: 25
84420162 AAGAGAAAAT
84420172 CAAATATGGGAAAATAAAAAGAATAA
1 CAAATAT-GGAAAATAAAAAGAATAA
* *
84420198 CATATATGGAAAATAAAAATAAT--
1 CAAATATGGAAAATAAAAAGAATAA
* *
84420221 TAAATAT-GAGAAATGAAAGAGAATAA
1 CAAATATGGA-AAAT-AAAAAGAATAA
*
84420247 CATATAT-GAAAA
1 CAAATATGGAAAA
84420259 GTAGAGATGG
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
22 2 0.04
23 9 0.18
24 7 0.14
25 18 0.37
26 13 0.27
ACGTcount: A:0.62, C:0.03, G:0.14, T:0.21
Consensus pattern (25 bp):
CAAATATGGAAAATAAAAAGAATAA
Found at i:84420215 original size:24 final size:24
Alignment explanation
Indices: 84420181--84420258 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 24
84420171 TCAAATATGG
84420181 GAAAATAAAAAGAATAACATATAT
1 GAAAATAAAAAGAATAACATATAT
* *
84420205 GGAAAATAAAAATAATTA-A-ATAT
1 -GAAAATAAAAAGAATAACATATAT
*
84420228 GAGAAATGAAAGAGAATAACATATAT
1 GA-AAAT-AAAAAGAATAACATATAT
84420254 GAAAA
1 GAAAA
84420259 GTAGAGATGG
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
22 2 0.05
23 8 0.18
24 9 0.20
25 19 0.43
26 6 0.14
ACGTcount: A:0.64, C:0.03, G:0.13, T:0.21
Consensus pattern (24 bp):
GAAAATAAAAAGAATAACATATAT
Found at i:84420425 original size:12 final size:13
Alignment explanation
Indices: 84420406--84420438 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
84420396 TACTAAGTTG
*
84420406 TCTTTTTTGTTTT
1 TCTTTTTTATTTT
84420419 T-TTTTTTATTTT
1 TCTTTTTTATTTT
84420431 TCTTTTTT
1 TCTTTTTT
84420439 TTTCCTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.03, C:0.06, G:0.03, T:0.88
Consensus pattern (13 bp):
TCTTTTTTATTTT
Found at i:84427658 original size:43 final size:43
Alignment explanation
Indices: 84427604--84427687 Score: 168
Period size: 43 Copynumber: 2.0 Consensus size: 43
84427594 TTGTTTTTGT
84427604 TTTATTTATGAGATTAAAATAGCACGATTTTGTTTCATGTAAA
1 TTTATTTATGAGATTAAAATAGCACGATTTTGTTTCATGTAAA
84427647 TTTATTTATGAGATTAAAATAGCACGATTTTGTTTCATGTA
1 TTTATTTATGAGATTAAAATAGCACGATTTTGTTTCATGTA
84427688 CGAGATTTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.45
Consensus pattern (43 bp):
TTTATTTATGAGATTAAAATAGCACGATTTTGTTTCATGTAAA
Found at i:84429284 original size:17 final size:17
Alignment explanation
Indices: 84429249--84429284 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
84429239 ATATTTAACA
*
84429249 ATTTTAAAATTATATAT
1 ATTTTAAAATTATAAAT
*
84429266 ATTTTAAAATTTTAAAT
1 ATTTTAAAATTATAAAT
84429283 AT
1 AT
84429285 ATACAATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTTAAAATTATAAAT
Found at i:84429876 original size:18 final size:19
Alignment explanation
Indices: 84429843--84429886 Score: 72
Period size: 18 Copynumber: 2.3 Consensus size: 19
84429833 TTTGAAATTC
84429843 AAAATTTAAGTTCGAGATTT
1 AAAA-TTAAGTTCGAGATTT
84429863 AAAATTAA-TTCGAGATTT
1 AAAATTAAGTTCGAGATTT
84429881 AAAATT
1 AAAATT
84429887 TAGAGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 16 0.67
19 4 0.17
20 4 0.17
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (19 bp):
AAAATTAAGTTCGAGATTT
Found at i:84429935 original size:7 final size:7
Alignment explanation
Indices: 84429914--84430004 Score: 50
Period size: 6 Copynumber: 13.4 Consensus size: 7
84429904 TTCAAGATTA
84429914 TTTAAA-
1 TTTAAAG
84429920 TTTAAAG
1 TTTAAAG
*
84429927 TTTAGAG
1 TTTAAAG
*
84429934 TTAAAAG
1 TTTAAAG
*
84429941 TTT-GAG
1 TTTAAAG
84429947 TTTAAA-
1 TTTAAAG
*
84429953 TTTGAA-
1 TTTAAAG
*
84429959 TTCAAAG
1 TTTAAAG
*
84429966 TTT-AAT
1 TTTAAAG
84429972 TTTAAAGG
1 TTTAAA-G
*
84429980 TTT-AAT
1 TTTAAAG
84429986 TTTAAAG
1 TTTAAAG
84429993 TTATATAAG
1 TT-TA-AAG
84430002 TTT
1 TTT
84430005 GGGTAGTTTG
Statistics
Matches: 63, Mismatches: 14, Indels: 14
0.69 0.15 0.15
Matches are distributed among these distances:
6 28 0.44
7 24 0.38
8 6 0.10
9 5 0.08
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.47
Consensus pattern (7 bp):
TTTAAAG
Found at i:84429984 original size:14 final size:14
Alignment explanation
Indices: 84429965--84429992 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
84429955 TGAATTCAAA
84429965 GTTTAATTTTAAAG
1 GTTTAATTTTAAAG
84429979 GTTTAATTTTAAAG
1 GTTTAATTTTAAAG
84429993 TTATATAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (14 bp):
GTTTAATTTTAAAG
Found at i:84430111 original size:18 final size:19
Alignment explanation
Indices: 84430077--84430114 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
84430067 TAAAAAATTG
84430077 TTAAAATATTATTTAATAA
1 TTAAAATATTATTTAATAA
*
84430096 TTAAAAT-TTTTTTAATAA
1 TTAAAATATTATTTAATAA
84430114 T
1 T
84430115 ACGATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTAAAATATTATTTAATAA
Found at i:84433332 original size:53 final size:53
Alignment explanation
Indices: 84433252--84433357 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
84433242 ATGTGCTGTT
84433252 AGTGCCAGAAATCGACAGAAACCTTCTCAGCATAGCTCAATTGCTCGAGAAAG
1 AGTGCCAGAAATCGACAGAAACCTTCTCAGCATAGCTCAATTGCTCGAGAAAG
84433305 AGTGCCAGAAATCGACAGAAACCTTCTCAGCATAGCTCAATTGCTCGAGAAAG
1 AGTGCCAGAAATCGACAGAAACCTTCTCAGCATAGCTCAATTGCTCGAGAAAG
84433358 GTTATTCTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.19
Consensus pattern (53 bp):
AGTGCCAGAAATCGACAGAAACCTTCTCAGCATAGCTCAATTGCTCGAGAAAG
Found at i:84435637 original size:39 final size:39
Alignment explanation
Indices: 84435433--84435655 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
84435423 TTGAATGCTG
* * * * *
84435433 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
84435473 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
84435512 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* * *
84435553 TCCGGGTTAAATCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
84435593 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
84435632 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
84435656 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 40 0.26
40 101 0.65
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:84446949 original size:7 final size:7
Alignment explanation
Indices: 84446939--84447060 Score: 62
Period size: 7 Copynumber: 18.1 Consensus size: 7
84446929 AATATATATT
84446939 TTTTAAA
1 TTTTAAA
84446946 TTTTAAA
1 TTTTAAA
* *
84446953 -TATATAT
1 TTTTA-AA
84446960 TTTTAAAA
1 TTTT-AAA
*
84446968 TTATT-TA
1 TT-TTAAA
84446975 TT-TAAA
1 TTTTAAA
84446981 TTTTAAA
1 TTTTAAA
* *
84446988 TATT-AT
1 TTTTAAA
84446994 TTTTAAA
1 TTTTAAA
84447001 TTTTAAA
1 TTTTAAA
**
84447008 AATTAAA
1 TTTTAAA
84447015 TTTT-AA
1 TTTTAAA
84447021 TTTT---
1 TTTTAAA
84447025 TTTTAAA
1 TTTTAAA
84447032 TTTTAAA
1 TTTTAAA
* * *
84447039 TTATGAT
1 TTTTAAA
84447046 TTTTAAA
1 TTTTAAA
*
84447053 TATTAAA
1 TTTTAAA
84447060 T
1 T
84447061 ATATTTTTAA
Statistics
Matches: 84, Mismatches: 21, Indels: 20
0.67 0.17 0.16
Matches are distributed among these distances:
4 4 0.05
5 1 0.01
6 16 0.19
7 55 0.65
8 5 0.06
9 3 0.04
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (7 bp):
TTTTAAA
Found at i:84446957 original size:20 final size:20
Alignment explanation
Indices: 84446932--84447068 Score: 94
Period size: 20 Copynumber: 7.5 Consensus size: 20
84446922 ATTTTATAAT
84446932 ATATATTTTTTAAATTTTAA
1 ATATATTTTTTAAATTTTAA
84446952 ATATATATTTTT--A----AA
1 ATATAT-TTTTTAAATTTTAA
84446967 AT-TATTTATTTAAATTTTAA
1 ATATATTT-TTTAAATTTTAA
84446987 ATAT-TATTTTTAAATTTTAA
1 ATATAT-TTTTTAAATTTTAA
84447007 A-A-A----TTAAATTTT-A
1 ATATATTTTTTAAATTTTAA
84447020 AT-T-TTTTTTAAATTTTAA
1 ATATATTTTTTAAATTTTAA
*
84447038 AT-TATGATTTTTAAATATTAA
1 ATATAT--TTTTTAAATTTTAA
84447059 ATATATTTTT
1 ATATATTTTT
84447069 AATAATATAA
Statistics
Matches: 94, Mismatches: 1, Indels: 44
0.68 0.01 0.32
Matches are distributed among these distances:
13 4 0.04
14 15 0.16
15 4 0.04
16 1 0.01
17 9 0.10
18 4 0.04
19 3 0.03
20 28 0.30
21 23 0.24
22 3 0.03
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (20 bp):
ATATATTTTTTAAATTTTAA
Found at i:84446957 original size:22 final size:23
Alignment explanation
Indices: 84446922--84446969 Score: 80
Period size: 22 Copynumber: 2.1 Consensus size: 23
84446912 TATTTGAAAT
*
84446922 ATTTTATAATATATATTTTTTAA
1 ATTTTATAATATATATTTTTAAA
84446945 ATTTTA-AATATATATTTTTAAA
1 ATTTTATAATATATATTTTTAAA
84446967 ATT
1 ATT
84446970 ATTTATTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
ATTTTATAATATATATTTTTAAA
Found at i:84446981 original size:35 final size:35
Alignment explanation
Indices: 84446920--84447000 Score: 121
Period size: 35 Copynumber: 2.3 Consensus size: 35
84446910 AATATTTGAA
*
84446920 ATATTTTATAATATATATTTTTTAAATTTTAAATAT
1 ATATTTT-TAAAATATATTTTTTAAATTTTAAATAT
84446956 ATATTTTTAAAAT-TATTTATTTAAATTTTAAATAT
1 ATATTTTTAAAATATATTT-TTTAAATTTTAAATAT
84446991 -TATTTTTAAA
1 ATATTTTTAAA
84447001 TTTTAAAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
34 15 0.35
35 21 0.49
36 7 0.16
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (35 bp):
ATATTTTTAAAATATATTTTTTAAATTTTAAATAT
Found at i:84447050 original size:21 final size:20
Alignment explanation
Indices: 84446922--84447070 Score: 107
Period size: 21 Copynumber: 8.0 Consensus size: 20
84446912 TATTTGAAAT
84446922 ATTTTATAATATATATTTTTTAA
1 ATTTTA-AAT-TATA-TTTTTAA
84446945 ATTTTAAATATATATTTTTAA
1 ATTTTAAAT-TATATTTTTAA
*
84446966 A-ATT--ATT-TA--TTTAA
1 ATTTTAAATTATATTTTTAA
84446980 ATTTTAAA-TATTATTTTTAA
1 ATTTTAAATTA-TATTTTTAA
84447000 ATTTTAAA--A-A---TTAA
1 ATTTTAAATTATATTTTTAA
84447014 ATTTT-AATT-T-TTTTTAA
1 ATTTTAAATTATATTTTTAA
84447031 ATTTTAAATTATGATTTTTAA
1 ATTTTAAATTAT-ATTTTTAA
*
84447052 ATATTAAA-TATATTTTTAA
1 ATTTTAAATTATATTTTTAA
84447071 TAATATAAAA
Statistics
Matches: 106, Mismatches: 3, Indels: 38
0.72 0.02 0.26
Matches are distributed among these distances:
13 2 0.02
14 15 0.14
15 2 0.02
16 3 0.03
17 12 0.11
18 8 0.08
19 10 0.09
20 18 0.17
21 22 0.21
22 8 0.08
23 6 0.06
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.58
Consensus pattern (20 bp):
ATTTTAAATTATATTTTTAA
Found at i:84447051 original size:31 final size:30
Alignment explanation
Indices: 84446976--84447038 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 30
84446966 AATTATTTAT
84446976 TTAAATTTTAAATATTATTTTTAAATTTTAAAAA
1 TTAAATTTT-AAT-TT-TTTTTAAATTTT-AAAA
84447010 TTAAATTTTAATTTTTTTTAAATTTTAAA
1 TTAAATTTTAATTTTTTTTAAATTTTAAA
84447039 TTATGATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
30 3 0.10
31 12 0.41
32 2 0.07
33 3 0.10
34 9 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (30 bp):
TTAAATTTTAATTTTTTTTAAATTTTAAAA
Found at i:84447175 original size:20 final size:20
Alignment explanation
Indices: 84447136--84447175 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
84447126 TTTGTAATAT
* *
84447136 TTTAAATGTATATTTTAAAA
1 TTTAAATGTAAATTTAAAAA
*
84447156 TTTAAATTTAAATTTAAAAA
1 TTTAAATGTAAATTTAAAAA
84447176 AGTATTTGAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
TTTAAATGTAAATTTAAAAA
Found at i:84447261 original size:30 final size:28
Alignment explanation
Indices: 84447190--84447277 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 28
84447180 TTTGAATATC
*
84447190 TTTAAAATTA-ATTTTAAAA-TTAATAAT
1 TTTAAAATTATA-TTTAAAATTTAAAAAT
84447217 TTATAAAAATTATATTTAAAATTTAAAAAT
1 TT-T-AAAATTATATTTAAAATTTAAAAAT
84447247 ATTTAAAATGTATATTTAAAATATTATAAAA
1 -TTTAAAAT-TATATTTAAAAT-TTA-AAAA
84447278 CAAATAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 11
0.81 0.02 0.17
Matches are distributed among these distances:
27 2 0.04
28 1 0.02
29 19 0.37
30 21 0.40
31 5 0.10
32 4 0.08
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (28 bp):
TTTAAAATTATATTTAAAATTTAAAAAT
Found at i:84447333 original size:25 final size:23
Alignment explanation
Indices: 84447304--84447407 Score: 87
Period size: 25 Copynumber: 4.6 Consensus size: 23
84447294 GAGGTCATTC
*
84447304 TTTAAAAATAATATATTTTAAATAA
1 TTTAAAAATAATA-ATTTAAAAT-A
*
84447329 TTTAAAAATCATAATTTAAAATA
1 TTTAAAAATAATAATTTAAAATA
84447352 -TTATAAAA-AAT-ATTT-AAA-A
1 TTTA-AAAATAATAATTTAAAATA
84447371 TTT-AAAAT-ATACATTTAAAATA
1 TTTAAAAATAATA-ATTTAAAATA
*
84447393 TTATAAAACTAATAA
1 TT-TAAAAATAATAA
84447408 AATTTGAAAG
Statistics
Matches: 65, Mismatches: 4, Indels: 21
0.72 0.04 0.23
Matches are distributed among these distances:
18 6 0.09
19 1 0.02
20 9 0.14
21 7 0.11
22 8 0.12
23 6 0.09
24 13 0.20
25 15 0.23
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (23 bp):
TTTAAAAATAATAATTTAAAATA
Found at i:84447387 original size:41 final size:39
Alignment explanation
Indices: 84447327--84447513 Score: 130
Period size: 41 Copynumber: 4.5 Consensus size: 39
84447317 TATTTTAAAT
84447327 AATTTAAAAATCATAATTTAAAATATTATAAAAAATATTTAA
1 AATTT-AAAAT-ATAATTTAAAATATTAT-AAAAATATTTAA
* *
84447369 AATTTAAAATATACATTTAAAATATTATAAAACTA-ATAA
1 AATTTAAAATATA-ATTTAAAATATTATAAAAATATTTAA
* * *
84447408 AATTTGAAAGGTCATATCTTTAAAATATT-TAAATAT-TTTATA
1 AATTT-AAA-AT-ATA-ATTTAAAATATTATAAAAATATTTA-A
* * * *
84447450 TTATTAAAAATATATATTTAATAT-TTAAAAATAATATTTAA
1 -AATTTAAAATATA-ATTTAAAATATTATAAA-AATATTTAA
*
84447491 AATTTTAAAAAATAATTTCAAAA
1 AA-TTTAAAATATAATTT-AAAA
84447514 ATATATTTAA
Statistics
Matches: 114, Mismatches: 19, Indels: 25
0.72 0.12 0.16
Matches are distributed among these distances:
39 10 0.09
40 31 0.27
41 43 0.38
42 27 0.24
43 3 0.03
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (39 bp):
AATTTAAAATATAATTTAAAATATTATAAAAATATTTAA
Found at i:84447395 original size:123 final size:120
Alignment explanation
Indices: 84447247--84447513 Score: 328
Period size: 123 Copynumber: 2.2 Consensus size: 120
84447237 ATTTAAAAAT
* *
84447247 ATTTAAAATGTATATTTAAAATATTATAAAACAAATAATAAATTTGAGAGGTCAT-TCTTTAAAA
1 ATTTAAAATATA-ATTTAAAATATTATAAAACAAAT-A-AAATTTGAAAGGTCATATCTTTAAAA
84447311 -A-TAATATATTTTAAATAATTTAAAAATCATA-ATTTAAAATATTATAAAA-AATATTTAAA
63 TATTAA-ATATTTTAAATAA-TTAAAAAT-ATATATTTAAAAT-TTA-AAAATAATATTTAAA
*
84447370 ATTTAAAATATACATTTAAAATATTATAAAACTAATAAAATTTGAAAGGTCATATCTTTAAAATA
1 ATTTAAAATATA-ATTTAAAATATTATAAAACAAATAAAATTTGAAAGGTCATATCTTTAAAATA
* * *
84447435 TTTAAATATTTTATATTATTAAAAATATATATTTAATATTTAAAAATAATATTTAAA
65 -TTAAATATTTTAAATAATTAAAAATATATATTTAAAATTTAAAAATAATATTTAAA
*
84447492 ATTTTAAAAAATAATTTCAAAA
1 A-TTTAAAATATAATTT-AAAA
84447514 ATATATTTAA
Statistics
Matches: 128, Mismatches: 8, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
121 19 0.15
122 31 0.24
123 64 0.50
124 11 0.09
125 3 0.02
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (120 bp):
ATTTAAAATATAATTTAAAATATTATAAAACAAATAAAATTTGAAAGGTCATATCTTTAAAATAT
TAAATATTTTAAATAATTAAAAATATATATTTAAAATTTAAAAATAATATTTAAA
Found at i:84447477 original size:21 final size:22
Alignment explanation
Indices: 84447453--84447513 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
84447443 TTTTATATTA
*
84447453 TTAAAAATATATATTTAATA-T
1 TTAAAAATATATATTTAAAATT
84447474 TTAAAAATA-ATATTTAAAATT
1 TTAAAAATATATATTTAAAATT
84447495 TTAAAAA-ATA-ATTTCAAAA
1 TTAAAAATATATATTT-AAAA
84447514 ATATATTTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
20 14 0.39
21 22 0.61
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
TTAAAAATATATATTTAAAATT
Found at i:84447479 original size:20 final size:20
Alignment explanation
Indices: 84447431--84447565 Score: 60
Period size: 20 Copynumber: 7.0 Consensus size: 20
84447421 ATATCTTTAA
84447431 AATATTT-AAATAT-T-TTAT
1 AATATTTAAAATATATATT-T
* *
84447449 ATTATTAAAAATATATATTT
1 AATATTTAAAATATATATTT
84447469 AATATTTAAAA-ATAATATTT
1 AATATTTAAAATAT-ATATTT
* *
84447489 AAAATTTTAAA-A-A-A--T
1 AATATTTAAAATATATATTT
*
84447504 AAT-TTCAAAA-ATATATTT
1 AATATTTAAAATATATATTT
84447522 AA-ATTTTAAAAAATATATATTAT
1 AATA-TTT--AAAATATATATT-T
* *
84447545 AAATATTTCAAATATACATTT
1 -AATATTTAAAATATATATTT
84447566 TAAATTTTTT
Statistics
Matches: 89, Mismatches: 12, Indels: 29
0.68 0.09 0.22
Matches are distributed among these distances:
14 6 0.07
15 4 0.04
16 1 0.01
17 1 0.01
18 9 0.10
19 10 0.11
20 27 0.30
21 7 0.08
22 17 0.19
23 1 0.01
24 5 0.06
25 1 0.01
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (20 bp):
AATATTTAAAATATATATTT
Found at i:84447484 original size:13 final size:13
Alignment explanation
Indices: 84447468--84447524 Score: 54
Period size: 12 Copynumber: 4.8 Consensus size: 13
84447458 AATATATATT
84447468 TAATATTTAAAAA
1 TAATATTTAAAAA
84447481 TAATATTT-AAAA
1 TAATATTTAAAAA
*
84447493 T--T-TTAAAAAA
1 TAATATTTAAAAA
*
84447503 TAAT-TTCAAAAA
1 TAATATTTAAAAA
84447515 T-ATATTTAAA
1 TAATATTTAAA
84447525 TTTTAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
9 2 0.05
10 6 0.16
11 2 0.05
12 19 0.51
13 8 0.22
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:84447505 original size:22 final size:20
Alignment explanation
Indices: 84447304--84447506 Score: 87
Period size: 21 Copynumber: 9.6 Consensus size: 20
84447294 GAGGTCATTC
84447304 TTTAAAAATAATATATTTTAAATAA
1 TTTAAAAAT-A-ATA-TTT-AA-AA
*
84447329 TTTAAAAATCATAATTTAAAA
1 TTTAAAAATAAT-ATTTAAAA
84447350 TATTATAAAA-AATATTTAAAA
1 T-TTA-AAAATAATATTTAAAA
*
84447371 TTT-AAAATATACATTTAAAA
1 TTTAAAAATA-ATATTTAAAA
* * *
84447391 TATTATAAA-ACTA-ATAAAA
1 T-TTAAAAATAATATTTAAAA
** *
84447410 TTTGAAAGGTCATATCTTTAAAA
1 TTT-AAAAAT-A-ATATTTAAAA
* * *
84447433 TATT-TAAAT-AT-TTTATAT
1 T-TTAAAAATAATATTTAAAA
*
84447451 TATTAAAAATATATATTTAATA
1 T-TTAAAAATA-ATATTTAAAA
84447473 TTTAAAAATAATATTTAAAA
1 TTTAAAAATAATATTTAAAA
84447493 TTTTAAAAAATAAT
1 -TTT-AAAAATAAT
84447507 TTCAAAAATA
Statistics
Matches: 136, Mismatches: 23, Indels: 41
0.68 0.12 0.20
Matches are distributed among these distances:
18 15 0.11
19 15 0.11
20 22 0.16
21 30 0.22
22 27 0.20
23 15 0.11
24 3 0.02
25 9 0.07
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.42
Consensus pattern (20 bp):
TTTAAAAATAATATTTAAAA
Found at i:84447530 original size:32 final size:33
Alignment explanation
Indices: 84447472--84447536 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
84447462 TATATTTAAT
84447472 ATTTAAAAATAATATTTAAAATTTTAAAAAATA
1 ATTTAAAAATAATATTTAAAATTTTAAAAAATA
84447505 ATTTCAAAAAT-ATATTT-AAATTTTAAAAAATA
1 ATTT-AAAAATAATATTTAAAATTTTAAAAAATA
84447537 TATATTATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 15 0.48
33 10 0.32
34 6 0.19
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (33 bp):
ATTTAAAAATAATATTTAAAATTTTAAAAAATA
Found at i:84447549 original size:33 final size:33
Alignment explanation
Indices: 84447470--84447550 Score: 112
Period size: 33 Copynumber: 2.4 Consensus size: 33
84447460 TATATATTTA
84447470 ATATTTAAAAATAATATTTAAAATTTTAAAAAAT
1 ATATTTAAAAAT-ATATTTAAAATTTTAAAAAAT
84447504 A-ATTTCAAAAATATATTT-AAATTTTAAAAAAT
1 ATATTT-AAAAATATATTTAAAATTTTAAAAAAT
*
84447536 ATATATTATAAATAT
1 ATAT-TTAAAAATAT
84447551 TTCAAATATA
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
32 15 0.35
33 19 0.44
34 9 0.21
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (33 bp):
ATATTTAAAAATATATTTAAAATTTTAAAAAAT
Found at i:84447552 original size:77 final size:75
Alignment explanation
Indices: 84447438--84447584 Score: 183
Period size: 78 Copynumber: 1.9 Consensus size: 75
84447428 TAAAATATTT
*
84447438 AAATATTTTATATTATTAAAAATATATATTTAATATTT-AAAAATA-ATATTTAAAATTTTAAAA
1 AAATATTTTAAATTATTAAAAATATATATTTAATATTTCAAAAATACAT-TTTAAAATTTTAAAA
84447501 AATAATTTCAA
65 AATAATTTCAA
* * *
84447512 AAATATATTTAAATT-TTAAAAAATATATATTATAAATATTTCAAATATACATTTTAAATTTTTT
1 AAATAT-TTTAAATTATT-AAAAATATATATT-T-AATATTTCAAAAATACATTTTAAAATTTTA
*
84447576 AAAATTAAT
62 AAAAATAAT
84447585 AATAAATAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
74 8 0.13
75 20 0.32
76 1 0.02
77 7 0.11
78 24 0.39
79 2 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (75 bp):
AAATATTTTAAATTATTAAAAATATATATTTAATATTTCAAAAATACATTTTAAAATTTTAAAAA
ATAATTTCAA
Found at i:84447580 original size:45 final size:42
Alignment explanation
Indices: 84447500--84447592 Score: 105
Period size: 45 Copynumber: 2.1 Consensus size: 42
84447490 AAATTTTAAA
* *
84447500 AAATAATTTCAAAAATATATTTAAATTTTAAAAAATATATATTAT
1 AAAT-ATTTCAAAAATACATTTAAATTTTAAAAAAT-TA-ATAAT
* **
84447545 AAATATTTCAAATATACATTTTAAATTTTTTAAAATTAATAAT
1 AAATATTTCAAAAATACA-TTTAAATTTTAAAAAATTAATAAT
84447588 AAATA
1 AAATA
84447593 AAATAAATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
43 9 0.21
44 14 0.33
45 19 0.45
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (42 bp):
AAATATTTCAAAAATACATTTAAATTTTAAAAAATTAATAAT
Found at i:84447668 original size:11 final size:10
Alignment explanation
Indices: 84447652--84447694 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
84447642 AGAATAGGAC
84447652 AAAAGTTAAAA
1 AAAAG-TAAAA
84447663 AAAAGTAAAA
1 AAAAGTAAAA
84447673 AAAA--AAAA
1 AAAAGTAAAA
*
84447681 CAAAGTAAAA
1 AAAAGTAAAA
84447691 AAAA
1 AAAA
84447695 CCAGGCAGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
8 7 0.25
10 16 0.57
11 5 0.18
ACGTcount: A:0.81, C:0.02, G:0.07, T:0.09
Consensus pattern (10 bp):
AAAAGTAAAA
Found at i:84447673 original size:18 final size:18
Alignment explanation
Indices: 84447659--84447694 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
84447649 GACAAAAGTT
84447659 AAAAA-AAAGTAAAAAAA
1 AAAAACAAAGTAAAAAAA
84447676 AAAAACAAAGTAAAAAAA
1 AAAAACAAAGTAAAAAAA
84447694 A
1 A
84447695 CCAGGCAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.86, C:0.03, G:0.06, T:0.06
Consensus pattern (18 bp):
AAAAACAAAGTAAAAAAA
Found at i:84451166 original size:40 final size:40
Alignment explanation
Indices: 84451111--84451329 Score: 284
Period size: 40 Copynumber: 5.5 Consensus size: 40
84451101 TTCGAATGAT
*
84451111 ATCCGGGTTAGGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
84451151 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
84451191 TTCCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
84451230 ATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* * * * *
84451271 A-CCGGGCTATGTCCCAAAGGCATTTGAGCGAG-TAGCTAT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAA
* *
84451310 ATCC-GGTTAAATTCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
84451330 TATGTGATTC
Statistics
Matches: 156, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 50 0.32
40 104 0.67
41 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:84451256 original size:79 final size:80
Alignment explanation
Indices: 84451113--84451329 Score: 289
Period size: 79 Copynumber: 2.7 Consensus size: 80
84451103 CGAATGATAT
* *
84451113 CCGGGTTAGGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
*
84451178 TGCGAGTTACTA-ATT
66 TGCGAGTTACTATA-A
*
84451193 CCGGGCTAAGT-CCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
*
84451257 TGTGAGTTACTATAA
66 TGCGAGTTACTATAA
* * * * * *
84451272 CCGGGCTATGTCCCAAAGGCATTTGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
84451330 TATGTGATTC
Statistics
Matches: 122, Mismatches: 12, Indels: 7
0.87 0.09 0.05
Matches are distributed among these distances:
79 89 0.73
80 33 0.27
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAA
Found at i:84454721 original size:46 final size:46
Alignment explanation
Indices: 84454668--84454843 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
84454658 TAGTTGAGCA
84454668 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84454714 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGTA-AGATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
84454759 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84454807 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84454844 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 3 0.03
45 1 0.01
46 62 0.56
47 28 0.25
48 1 0.01
49 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84454824 original size:93 final size:93
Alignment explanation
Indices: 84454665--84454836 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
84454655 GAATAGTTGA
* *
84454665 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84454730 TGAGTCCGAGTTCGTAAGATGTAACTAG
66 TGAGTCCGAGTTCGTAAGATGTAACTAG
*
84454758 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84454823 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
84454837 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTAAGATGTAACTAG
Found at i:84457520 original size:42 final size:42
Alignment explanation
Indices: 84457463--84457626 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 42
84457453 TAGGGTTATG
* *
84457463 TGTGATTTCGTGTAAGACCATATCTAGGATATGGCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* * * *
84457505 TGTGATTTCATGTAAGAACATGTCTGGGACATGGCATTGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
* ** * *
84457547 TGAGACATCATGTAAGACCATAGCTGGGCTATCGGCATCGATA
1 TGTGATTTCATGTAAGACCATATCTGGGATAT-GGCATCGATA
** *
84457590 TGTGATCCCATATAAGACCATATCTGGGATATGGCAT
1 TGTGATTTCATGTAAGACCATATCTGGGATATGGCAT
84457627 TGGCATCTTA
Statistics
Matches: 99, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
42 65 0.66
43 34 0.34
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (42 bp):
TGTGATTTCATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:84457606 original size:85 final size:84
Alignment explanation
Indices: 84457473--84457628 Score: 222
Period size: 85 Copynumber: 1.8 Consensus size: 84
84457463 TGTGATTTCG
* ** * *
84457473 TGTAAGACCATATCTAGGATATGGCATCGATATGTGATTTCATGTAAGAACATGTCTGGGACATG
1 TGTAAGACCATAGCTAGGATATGGCATCGATATGTGATCCCATATAAGAACATATCTGGGACATG
84457538 GCATTGATATGAGACATCA
66 GCATTGATATGAGACATCA
* * * *
84457557 TGTAAGACCATAGCTGGGCTATCGGCATCGATATGTGATCCCATATAAGACCATATCTGGGATAT
1 TGTAAGACCATAGCTAGGATAT-GGCATCGATATGTGATCCCATATAAGAACATATCTGGGACAT
84457622 GGCATTG
65 GGCATTG
84457629 GCATCTTACT
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
84 19 0.31
85 43 0.69
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (84 bp):
TGTAAGACCATAGCTAGGATATGGCATCGATATGTGATCCCATATAAGAACATATCTGGGACATG
GCATTGATATGAGACATCA
Found at i:84460163 original size:20 final size:20
Alignment explanation
Indices: 84460134--84460183 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
84460124 CATGGCCTAC
84460134 CCACAAGGGCATGTCCCAAG
1 CCACAAGGGCATGTCCCAAG
*
84460154 CCACACGGGCATGTCCCAAG
1 CCACAAGGGCATGTCCCAAG
*
84460174 CCACATGGGC
1 CCACAAGGGC
84460184 GTATGACCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.26, C:0.38, G:0.26, T:0.10
Consensus pattern (20 bp):
CCACAAGGGCATGTCCCAAG
Found at i:84464683 original size:13 final size:13
Alignment explanation
Indices: 84464665--84464691 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
84464655 TGAATTAGTA
84464665 TGTGTGAAAATTT
1 TGTGTGAAAATTT
84464678 TGTGTGAAAATTT
1 TGTGTGAAAATTT
84464691 T
1 T
84464692 ATCGTTTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (13 bp):
TGTGTGAAAATTT
Found at i:84465907 original size:43 final size:43
Alignment explanation
Indices: 84465787--84465940 Score: 195
Period size: 43 Copynumber: 3.6 Consensus size: 43
84465777 TGTGTTATCG
* * *
84465787 TGTAAGACCACGTTTGGGACATTGGAATCGACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGACATTGGAATCGA-TATTTGATTT-CA
* **
84465831 TGTAAGACCATGTCTGGGACATTGGCATC-ATATTTGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGAATCGATATTTGATTTCA
* * *
84465873 TGTAAGACCCTGTCTGGGACAGTGGAATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGACATTGGAATCGATATTTGATTTCA
84465916 TGTAAGACCATGTCTGGGACATTGG
1 TGTAAGACCATGTCTGGGACATTGG
84465941 CATTGTACGA
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
42 27 0.29
43 41 0.44
44 26 0.28
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGAATCGATATTTGATTTCA
Found at i:84465941 original size:85 final size:86
Alignment explanation
Indices: 84465786--84465943 Score: 250
Period size: 85 Copynumber: 1.8 Consensus size: 86
84465776 ATGTGTTATC
* *
84465786 GTGTAAGACCACGTTTGGGACATTGGAATCGACTTATGATTTACATGTAAGACCATGTCTGGGAC
1 GTGTAAGACCACGTCTGGGACAGTGGAATCGACTTATGATTTACATGTAAGACCATGTCTGGGAC
84465851 ATTGGCATCATATTTGATTTT
66 ATTGGCATCATATTTGATTTT
*
84465872 GTGTAAGACC-CTGTCTGGGACAGTGGAATCGA-TATTTGA-TTACATGTAAGACCATGTCTGGG
1 GTGTAAGACCAC-GTCTGGGACAGTGGAATCGACT-TATGATTTACATGTAAGACCATGTCTGGG
84465934 ACATTGGCAT
64 ACATTGGCAT
84465944 TGTACGAGCT
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
85 35 0.52
86 32 0.48
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (86 bp):
GTGTAAGACCACGTCTGGGACAGTGGAATCGACTTATGATTTACATGTAAGACCATGTCTGGGAC
ATTGGCATCATATTTGATTTT
Found at i:84474298 original size:27 final size:28
Alignment explanation
Indices: 84474214--84474311 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
84474204 CATGAGATTG
* * * *
84474214 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
84474243 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
84474271 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
84474298 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
84474312 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:84474322 original size:27 final size:27
Alignment explanation
Indices: 84474242--84474324 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
84474232 TAAATTGTAC
* *
84474242 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
84474270 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
84474297 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
84474324 A
1 A
84474325 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:84474325 original size:29 final size:27
Alignment explanation
Indices: 84474214--84474325 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
84474204 CATGAGATTG
** * *
84474214 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
84474243 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
84474271 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
84474298 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
84474326 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:84489916 original size:18 final size:18
Alignment explanation
Indices: 84489893--84489927 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
84489883 TTTACTATCT
84489893 AAATTAATAAATTAAATG
1 AAATTAATAAATTAAATG
* *
84489911 AAATTATTAATTTAAAT
1 AAATTAATAAATTAAAT
84489928 CAAGATAGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (18 bp):
AAATTAATAAATTAAATG
Found at i:84490155 original size:29 final size:29
Alignment explanation
Indices: 84490113--84490276 Score: 109
Period size: 29 Copynumber: 5.7 Consensus size: 29
84490103 ATCAACGATA
84490113 ATCGAATATGAAAAGGGATAGCTTTGGCT
1 ATCGAATATGAAAAGGGATAGCTTTGGCT
* * * * *
84490142 ATCGATTATGAAAAGGGAT-GGTGATGACC
1 ATCGAATATGAAAAGGGATAGCT-TTGGCT
* * ** * *
84490171 GTC-AATTATGAAAAGGGAT-GGTGACGACC
1 ATCGAA-TATGAAAAGGGATAGCT-TTGGCT
** * * **
84490200 ATAAAAAATGAAAAAGGATAGCTTCAGCT
1 ATCGAATATGAAAAGGGATAGCTTTGGCT
84490229 ATCGAATATGAAAAGGGATAGCTTTGGCT
1 ATCGAATATGAAAAGGGATAGCTTTGGCT
* *
84490258 ATCGATTGTGAAAAGGGAT
1 ATCGAATATGAAAAGGGAT
84490277 GGAGATGACC
Statistics
Matches: 106, Mismatches: 25, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
28 3 0.03
29 99 0.93
30 4 0.04
ACGTcount: A:0.38, C:0.10, G:0.27, T:0.24
Consensus pattern (29 bp):
ATCGAATATGAAAAGGGATAGCTTTGGCT
Found at i:84490297 original size:116 final size:116
Alignment explanation
Indices: 84490113--84490332 Score: 361
Period size: 116 Copynumber: 1.9 Consensus size: 116
84490103 ATCAACGATA
* * *
84490113 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGTGATGACCGTCAATT
1 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGAGATGACCATCAACT
*
84490178 ATGAAAAGGGATGGTGACGACCAT-AAAAAATGAAAAAGGATAGCTTCAGCT
66 ATGAAAAGGAATGGTGACGA-CATCAAAAAATGAAAAAGGATAGCTTCAGCT
*
84490229 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTGTGAAAAGGGATGGAGATGACCATCAACT
1 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGAGATGACCATCAACT
**
84490294 ATGAAAAGGAATGGTGACGACATCAATTAATGAAAAAGG
66 ATGAAAAGGAATGGTGACGACATCAAAAAATGAAAAAGG
84490333 GATGGTTTCA
Statistics
Matches: 96, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
115 3 0.03
116 93 0.97
ACGTcount: A:0.40, C:0.11, G:0.27, T:0.23
Consensus pattern (116 bp):
ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGAGATGACCATCAACT
ATGAAAAGGAATGGTGACGACATCAAAAAATGAAAAAGGATAGCTTCAGCT
Found at i:84490298 original size:87 final size:87
Alignment explanation
Indices: 84490117--84490300 Score: 208
Period size: 87 Copynumber: 2.1 Consensus size: 87
84490107 ACGATAATCG
* ** * * *
84490117 AATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGTGATGACCGTCAATTATGA
1 AATATGAAAAAGGATAGCTTCAGCTATCGAATATGAAAAGGGATGCTGATGACCATCAATTATGA
*
84490182 AAAGGGATGGTGACGACCATAA
66 AAAGGGATGGAGACGACCATAA
* * * * * *
84490204 AAAATGAAAAAGGATAGCTTCAGCTATCGAATATGAAAAGGGATAGCT-TTGGCTATCGATTGTG
1 AATATGAAAAAGGATAGCTTCAGCTATCGAATATGAAAAGGGAT-GCTGATGACCATCAATTATG
* *
84490268 AAAAGGGATGGAGATGACCATCA
65 AAAAGGGATGGAGACGACCATAA
*
84490291 ACTATGAAAA
1 AATATGAAAA
84490301 GGAATGGTGA
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
87 77 0.97
88 2 0.03
ACGTcount: A:0.39, C:0.11, G:0.27, T:0.23
Consensus pattern (87 bp):
AATATGAAAAAGGATAGCTTCAGCTATCGAATATGAAAAGGGATGCTGATGACCATCAATTATGA
AAAGGGATGGAGACGACCATAA
Found at i:84490357 original size:30 final size:29
Alignment explanation
Indices: 84490148--84490376 Score: 97
Period size: 29 Copynumber: 7.9 Consensus size: 29
84490138 GGCTATCGAT
* ** * *
84490148 TATGAAAAGGGATGGTGATGACCGTCAAT
1 TATGAAAAGGGATGGTTACAACCATCAAA
* * *
84490177 TATGAAAAGGGATGGTGACGACCATAAAA
1 TATGAAAAGGGATGGTTACAACCATCAAA
* * * * * *
84490206 AATGAAAAAGGATAGCTT-CAGCTATCGAA
1 TATGAAAAGGGAT-GGTTACAACCATCAAA
* *** * * *
84490235 TATGAAAAGGGATAGCTT-TGGCTATCGAT
1 TATGAAAAGGGAT-GGTTACAACCATCAAA
* ** ** *
84490264 TGTGAAAAGGGATGGAGATGACCATCAAC
1 TATGAAAAGGGATGGTTACAACCATCAAA
* * * *
84490293 TATGAAAAGGAATGGTGACGA-CATCAAT
1 TATGAAAAGGGATGGTTACAACCATCAAA
*
84490321 TAATGAAAAAGGGATGGTTTCAACCATCAAA
1 T-ATG-AAAAGGGATGGTTACAACCATCAAA
*
84490352 TATG-AAAGGGACGGTTACAACCATC
1 TATGAAAAGGGATGGTTACAACCATC
84490377 GTTTAGCACA
Statistics
Matches: 157, Mismatches: 38, Indels: 11
0.76 0.18 0.05
Matches are distributed among these distances:
28 27 0.17
29 105 0.67
30 18 0.11
31 7 0.04
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.22
Consensus pattern (29 bp):
TATGAAAAGGGATGGTTACAACCATCAAA
Found at i:84490360 original size:116 final size:116
Alignment explanation
Indices: 84490117--84490362 Score: 352
Period size: 116 Copynumber: 2.1 Consensus size: 116
84490107 ACGATAATCG
* * *
84490117 AATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGTGATGACCGTCAATTATGA
1 AATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGAGATGACCATCAACTATGA
* * * *
84490182 AAAGGGATGGTGACGACCATAAAAAATGAAAAAGGATAGCTTCAGCTATCG
66 AAAGGAATGGTGACGACCATAAAAAATGAAAAAGGATAGCTTCAACCATCA
*
84490233 AATATGAAAAGGGATAGCTTTGGCTATCGATTGTGAAAAGGGATGGAGATGACCATCAACTATGA
1 AATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGAGATGACCATCAACTATGA
** * *
84490298 AAAGGAATGGTGACGA-CATCAATTAATGAAAAAGGGATGGTTTCAACCATCA
66 AAAGGAATGGTGACGACCAT-AAAAAATGAAAAA-GGATAGCTTCAACCATCA
84490350 AATATG-AAAGGGA
1 AATATGAAAAGGGA
84490363 CGGTTACAAC
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
115 3 0.03
116 94 0.81
117 19 0.16
ACGTcount: A:0.40, C:0.11, G:0.26, T:0.23
Consensus pattern (116 bp):
AATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAAAGGGATGGAGATGACCATCAACTATGA
AAAGGAATGGTGACGACCATAAAAAATGAAAAAGGATAGCTTCAACCATCA
Found at i:84494278 original size:26 final size:26
Alignment explanation
Indices: 84494249--84494303 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
84494239 AACACACCAA
*
84494249 TATCGCAGCAAGGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
* *
84494275 TATCGTAGCAAAGCTGCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
84494301 TAT
1 TAT
84494304 ATGTGGCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.22
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:84510963 original size:43 final size:44
Alignment explanation
Indices: 84510892--84511026 Score: 175
Period size: 43 Copynumber: 3.1 Consensus size: 44
84510882 TATCGAAATG
* * *
84510892 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
* *
84510936 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
* *
84510979 T-ATTATTCAAGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATTC-GGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
84511024 TGA
1 TGA
84511027 AATGTTATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.01
43 36 0.46
44 7 0.09
45 33 0.42
46 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAA
Found at i:84511008 original size:45 final size:43
Alignment explanation
Indices: 84510912--84511026 Score: 160
Period size: 45 Copynumber: 2.6 Consensus size: 43
84510902 GCTTCGGGCC
* *
84510912 TAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGAGCT
1 TAGCAGGCTATAATGCCGGTGAAATGATATCAGCCTTTGAGCT
* *
84510955 TAGTAGGCTATGATGCCGGTGAAAT-ATTATTCAAGCCTTTGAGCT
1 TAGCAGGCTATAATGCCGGTGAAATGA-TA-TC-AGCCTTTGAGCT
84511000 TAGCAGGCTATAATGCCGGTGAAATGA
1 TAGCAGGCTATAATGCCGGTGAAATGA
84511027 AATGTTATGT
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 1 0.02
43 25 0.40
44 2 0.03
45 33 0.53
46 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (43 bp):
TAGCAGGCTATAATGCCGGTGAAATGATATCAGCCTTTGAGCT
Found at i:84511478 original size:38 final size:38
Alignment explanation
Indices: 84511323--84511493 Score: 234
Period size: 38 Copynumber: 4.5 Consensus size: 38
84511313 GTAGGCTATA
* *
84511323 TGCTGGAATTATATCCGGGTTAAATCCTGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* *
84511361 TGCTAGTAATATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* *
84511399 TGCTGGTAATATATCCGGGTTAATTCCCGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * * *
84511437 TGCTGGTATTATATCCTGGTTAAATCCCACATGCCTAG
1 TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
84511475 TGCTGGTATTATATTCGGG
1 TGCTGGTATTATATCCGGG
84511494 CCTTTGAGCC
Statistics
Matches: 118, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 118 1.00
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:84511583 original size:45 final size:45
Alignment explanation
Indices: 84511489--84511583 Score: 106
Period size: 45 Copynumber: 2.1 Consensus size: 45
84511479 GGTATTATAT
* * *
84511489 TCGGGCCTTTGAGCCTAGTAGGCTATAATACCGATGAGATACTAT
1 TCGGGCCTTTGAGCCTAGTAGACTATAATACCGATGAAATACTAA
*
84511534 TCGGG-CTTTCGAGCCTAG-ACGACTATAATGCCGATGAAATGA-TAA
1 TCGGGCCTTT-GAGCCTAGTA-GACTATAATACCGATGAAAT-ACTAA
84511579 TCGGG
1 TCGGG
84511584 TCTCGATCCT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
44 5 0.12
45 37 0.86
46 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (45 bp):
TCGGGCCTTTGAGCCTAGTAGACTATAATACCGATGAAATACTAA
Found at i:84521864 original size:28 final size:28
Alignment explanation
Indices: 84521832--84521920 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
84521822 TTTTACCAAA
84521832 GTATGAATTATGGGTCAATTCAAACAAT
1 GTATGAATTATGGGTCAATTCAAACAAT
* ** ** * *
84521860 GTATG-TTTAAAAAGGT-AATTTTACCAAA
1 GTATGAATT--ATGGGTCAATTCAAACAAT
84521888 GTATGAATTATGGGTCAATTCAAACAAT
1 GTATGAATTATGGGTCAATTCAAACAAT
84521916 GTATG
1 GTATG
84521921 TATTGAAGAA
Statistics
Matches: 43, Mismatches: 14, Indels: 8
0.66 0.22 0.12
Matches are distributed among these distances:
27 6 0.14
28 31 0.72
29 6 0.14
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (28 bp):
GTATGAATTATGGGTCAATTCAAACAAT
Found at i:84521875 original size:56 final size:56
Alignment explanation
Indices: 84521811--84521921 Score: 222
Period size: 56 Copynumber: 2.0 Consensus size: 56
84521801 AAGTTAGGGG
84521811 TAAAAAGGTAATTTTACCAAAGTATGAATTATGGGTCAATTCAAACAATGTATGTT
1 TAAAAAGGTAATTTTACCAAAGTATGAATTATGGGTCAATTCAAACAATGTATGTT
84521867 TAAAAAGGTAATTTTACCAAAGTATGAATTATGGGTCAATTCAAACAATGTATGT
1 TAAAAAGGTAATTTTACCAAAGTATGAATTATGGGTCAATTCAAACAATGTATGT
84521922 ATTGAAGAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.33
Consensus pattern (56 bp):
TAAAAAGGTAATTTTACCAAAGTATGAATTATGGGTCAATTCAAACAATGTATGTT
Found at i:84526772 original size:23 final size:23
Alignment explanation
Indices: 84526746--84526790 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
84526736 AGGGTTCTCC
84526746 ATAGTAAGTGATTCCAAGCCCCA
1 ATAGTAAGTGATTCCAAGCCCCA
*
84526769 ATAGTAAGTGATTGCAAGCCCC
1 ATAGTAAGTGATTCCAAGCCCC
84526791 GTTTTTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (23 bp):
ATAGTAAGTGATTCCAAGCCCCA
Found at i:84527654 original size:46 final size:45
Alignment explanation
Indices: 84527602--84527774 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
84527592 TGGTTGAGCA
84527602 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* * * * *
84527648 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAA-T--G
* *
84527693 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAATG
* *
84527741 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
84527775 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.56
47 26 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAATG
Done.