Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 249 of 345
Found at i:84527758 original size:93 final size:93
Alignment explanation
Indices: 84527599--84527769 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
84527589 GGATGGTTGA
* * * **
84527599 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
*
84527664 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
84527692 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
84527757 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84527770 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84550855 original size:28 final size:28
Alignment explanation
Indices: 84550824--84550970 Score: 95
Period size: 29 Copynumber: 5.2 Consensus size: 28
84550814 TCGTATACAC
* *
84550824 AGTGCCCACTGACTAATTTCGCACACAT
1 AGTGCCCACTGACGAATCTCGCACACAT
* * * *
84550852 AGTGCTCGATTAAAGAA-CTCGCACACAT
1 AGTGC-CCACTGACGAATCTCGCACACAT
* * *
84550880 AGTGCCTCAATTACCAATCTCGCACACAT
1 AGTGCC-CACTGACGAATCTCGCACACAT
* * *
84550909 AGTGCTCAATTGAAGAA-CTCGCACACAT
1 AGTGC-CCACTGACGAATCTCGCACACAT
*
84550937 AGTGCCTCAACT-ACTG-ATCTGGCACACAT
1 AGTGCC-C-ACTGAC-GAATCTCGCACACAT
84550966 AGTGC
1 AGTGC
84550971 TCGGTTGAAG
Statistics
Matches: 91, Mismatches: 20, Indels: 15
0.72 0.16 0.12
Matches are distributed among these distances:
27 2 0.02
28 43 0.47
29 45 0.49
30 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (28 bp):
AGTGCCCACTGACGAATCTCGCACACAT
Found at i:84550902 original size:29 final size:29
Alignment explanation
Indices: 84550842--84550970 Score: 133
Period size: 29 Copynumber: 4.5 Consensus size: 29
84550832 CTGACTAATT
* *
84550842 TCGCACACATAGTG-CTCGATTA-AAGAAC
1 TCGCACACATAGTGCCTCAATTACAA-ATC
*
84550870 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCCTCAATTACAAATC
84550899 TCGCACACATAGTG-CTCAATTGA-AGAA-C
1 TCGCACACATAGTGCCTCAATT-ACA-AATC
* **
84550927 TCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCCTCAATTACAAATC
*
84550956 TGGCACACATAGTGC
1 TCGCACACATAGTGC
84550971 TCGGTTGAAG
Statistics
Matches: 86, Mismatches: 8, Indels: 13
0.80 0.07 0.12
Matches are distributed among these distances:
28 38 0.44
29 47 0.55
30 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.22
Consensus pattern (29 bp):
TCGCACACATAGTGCCTCAATTACAAATC
Found at i:84550904 original size:57 final size:57
Alignment explanation
Indices: 84550842--84551002 Score: 232
Period size: 57 Copynumber: 2.8 Consensus size: 57
84550832 CTGACTAATT
* *
84550842 TCGCACACATAGTGCTCGATTAAAGAACTCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* **
84550899 TCGCACACATAGTGCTCAATTGAAGAACTCGCACACATAGTGCCTCAACTACTGATC
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
* * * * *
84550956 TGGCACACATAGTGCTCGGTTGAAGAGCTTGCACACACAGTGCCTCA
1 TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCA
84551003 TAATTCCAGC
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 93 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (57 bp):
TCGCACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGCCTCAACTACCAATC
Found at i:84551075 original size:40 final size:40
Alignment explanation
Indices: 84551008--84551283 Score: 484
Period size: 40 Copynumber: 6.9 Consensus size: 40
84550998 CCTCATAATT
* *
84551008 CCAGCACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCA
1 CCAGCACGAATGCTCTTCG-GGACTTAGCCCGGATATAACA
*
84551047 CTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
84551087 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
84551127 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
84551167 CCAGCACGAATGCTCTTCGGGATTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
*
84551207 CCAGCACGAATGCTCTTCGGGACTTAGCCCAGATATAACA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
84551247 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
84551284 TAACTCTCAA
Statistics
Matches: 227, Mismatches: 8, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
39 14 0.06
40 213 0.94
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
Found at i:84556288 original size:46 final size:45
Alignment explanation
Indices: 84556235--84556408 Score: 172
Period size: 46 Copynumber: 3.8 Consensus size: 45
84556225 TGGTTGAGCA
*
84556235 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GAATGCAAATG
* * * * * *
84556281 TCCGAACTCATTGAGTTGAGTTCGAGTTC-GTGA-AATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGAATGCAA--ATG
*
84556326 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GAATGCAAATG
* * * *
84556374 CCCGAGCTTGTTGAGTTGAGTCTGAGTTCACTTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAG
84556409 GGTCGGGTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
43 5 0.05
45 5 0.05
46 57 0.55
47 27 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGAATGCAAATG
Found at i:84556391 original size:93 final size:93
Alignment explanation
Indices: 84556232--84556402 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
84556222 GGATGGTTGA
* * *
84556232 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGAATGCAAATGCCCGAACTCATTGAGT
84556297 TGAGT-TCGAGTTCGTGAAATGTAACTAG
66 TGAGTCT-GAGTTCGTGAAATGTAACTAG
* * **
84556325 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGGATGCAAATGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGAATGCAAATGCCCGAACTCATTGAGT
84556390 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
84556403 ACTTAGGGTC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 69 0.99
94 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTACGAATGCAAATGCCCGAACTCATTGAGT
TGAGTCTGAGTTCGTGAAATGTAACTAG
Found at i:84563853 original size:46 final size:45
Alignment explanation
Indices: 84563803--84563974 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
84563793 TGGTTGAGCA
84563803 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
84563849 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
84563895 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
84563941 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
84563975 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:84563957 original size:92 final size:92
Alignment explanation
Indices: 84563800--84563969 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
84563790 GGATGGTTGA
* *
84563800 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84563865 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
84563892 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84563957 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84563970 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:84577404 original size:46 final size:46
Alignment explanation
Indices: 84577354--84577529 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
84577344 TGGTTGAGCA
84577354 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84577400 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
84577445 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84577493 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84577530 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84577510 original size:93 final size:93
Alignment explanation
Indices: 84577351--84577522 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
84577341 GGATGGTTGA
* *
84577351 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84577416 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
84577444 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84577509 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
84577523 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84590931 original size:46 final size:46
Alignment explanation
Indices: 84590881--84591056 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
84590871 TGGTTGAGCA
84590881 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84590927 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
84590972 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
84591020 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84591057 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84591037 original size:93 final size:93
Alignment explanation
Indices: 84590878--84591049 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
84590868 GGATGGTTGA
* *
84590878 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84590943 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
84590971 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
84591036 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
84591050 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84596216 original size:24 final size:24
Alignment explanation
Indices: 84596184--84596232 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
84596174 TTTTATTAGA
84596184 TCAACTCCATAAATCTGATTTTCC
1 TCAACTCCATAAATCTGATTTTCC
84596208 TCAACTCCATAAATCTGATTTTCC
1 TCAACTCCATAAATCTGATTTTCC
84596232 T
1 T
84596233 TGAGTTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.04, T:0.39
Consensus pattern (24 bp):
TCAACTCCATAAATCTGATTTTCC
Found at i:84609241 original size:23 final size:23
Alignment explanation
Indices: 84609214--84609263 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
84609204 GTGATAAGGT
84609214 AATTAAGTACTTAATG-TTGTTAC
1 AATTAAGTACTTAA-GATTGTTAC
84609237 AATTAAGTACTTAAGATTGTTAC
1 AATTAAGTACTTAAGATTGTTAC
84609260 AATT
1 AATT
84609264 GACTTATGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 1 0.04
23 25 0.96
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (23 bp):
AATTAAGTACTTAAGATTGTTAC
Found at i:84612710 original size:27 final size:27
Alignment explanation
Indices: 84612672--84612725 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
84612662 TACTGAGTCT
84612672 GTTGGGGCAGTTTGTTCGGGTTAGTAA
1 GTTGGGGCAGTTTGTTCGGGTTAGTAA
84612699 GTTGGGGCAGTTTGTTCGGGTTAGTAA
1 GTTGGGGCAGTTTGTTCGGGTTAGTAA
84612726 ACTCTATAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.07, G:0.41, T:0.37
Consensus pattern (27 bp):
GTTGGGGCAGTTTGTTCGGGTTAGTAA
Found at i:84618305 original size:46 final size:48
Alignment explanation
Indices: 84618254--84618384 Score: 157
Period size: 46 Copynumber: 2.8 Consensus size: 48
84618244 ATGGTTGAGC
*
84618254 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
* * *
84618301 -TCCGAACTCGTTGAGTTGATTCCGAGTT--C-GA-GAGATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAAC-AGG
84618346 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84618385 GCGGGTTACA
Statistics
Matches: 69, Mismatches: 6, Indels: 15
0.77 0.07 0.17
Matches are distributed among these distances:
42 1 0.01
43 7 0.10
44 1 0.01
45 2 0.03
46 27 0.39
47 27 0.39
49 1 0.01
50 2 0.03
51 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
Found at i:84622277 original size:40 final size:40
Alignment explanation
Indices: 84622225--84622414 Score: 256
Period size: 40 Copynumber: 4.8 Consensus size: 40
84622215 ATAACCACAA
* * * * * *
84622225 GCACAATTGCCTTCGGGTCTTAACTCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
* *
84622265 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
84622305 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
* *
84622345 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTT
* *
84622385 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
84622415 GTATTCAAAT
Statistics
Matches: 135, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
40 131 0.97
41 4 0.03
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
Found at i:84630753 original size:40 final size:40
Alignment explanation
Indices: 84630703--84630889 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
84630693 AACCACAAGA
* * * * * *
84630703 CACAATTGCCTTCGGGTCTTAACTCGGGTATAGCAACTCG
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTG
* *
84630743 CACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTTG
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTG
84630783 CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTG
1 CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTG
* * *
84630823 CACAAATTCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAG
1 CACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTTG
* *
84630863 CATAAATGCCTTC--GACTTAGCCCGGAT
1 CACAAATGCCTTCGGGTCTTAGCCCGGAT
84630890 GTATTCAAAT
Statistics
Matches: 130, Mismatches: 16, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
38 13 0.10
40 113 0.87
41 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (40 bp):
CACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTG
Found at i:84632626 original size:17 final size:16
Alignment explanation
Indices: 84632598--84632629 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
84632588 ACTTTTTCTT
84632598 TTTATTCTTTCTTTTA
1 TTTATTCTTTCTTTTA
84632614 TTTATTCCTTTCTTTT
1 TTTATT-CTTTCTTTT
84632630 CCAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTATTCTTTCTTTTA
Found at i:84644731 original size:29 final size:29
Alignment explanation
Indices: 84644689--84644747 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
84644679 TATGAATTAG
84644689 AACATTATTGCAGTATTATTATCATAACA
1 AACATTATTGCAGTATTATTATCATAACA
84644718 AACATTATTGCAGTATTATTATCATAACA
1 AACATTATTGCAGTATTATTATCATAACA
84644747 A
1 A
84644748 CTTACCTCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (29 bp):
AACATTATTGCAGTATTATTATCATAACA
Found at i:84651771 original size:42 final size:42
Alignment explanation
Indices: 84651659--84651781 Score: 117
Period size: 42 Copynumber: 2.9 Consensus size: 42
84651649 TACCATACCA
* * * *
84651659 ATGCCATATCCCATA-TATGGTCTTACATGTAA-TCCCGTATCG
1 ATGCCATAACCCA-AGTATGGTCTTACACG-AAGTCTCATATCG
** *
84651701 ATGCCAATAAATC-AGCTATGGCCTTACACGAAGTCTCATATCG
1 ATGCC-ATAACCCAAG-TATGGTCTTACACGAAGTCTCATATCG
*
84651744 ATGCCATAACCCAAGTATGGTCTTACACGTAGTCTCAT
1 ATGCCATAACCCAAGTATGGTCTTACACGAAGTCTCAT
84651782 TAACCCTAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 10
0.76 0.13 0.12
Matches are distributed among these distances:
41 1 0.02
42 33 0.51
43 31 0.48
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (42 bp):
ATGCCATAACCCAAGTATGGTCTTACACGAAGTCTCATATCG
Found at i:84659082 original size:42 final size:42
Alignment explanation
Indices: 84658971--84659082 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
84658961 TACCATACCA
* *
84658971 ATGCCATATCCCAGATATGATCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAAATATGATCTTACATGTAATCTCATATCG
* * * *
84659013 ATGTCAATAGCCCAACTATGGTCTTACATG-AAGTCTCATATCG
1 ATG-CCATATCCCAAATATGATCTTACATGTAA-TCTCATATCG
*
84659056 ATGCCATATCCCAAATATGTTCTTACA
1 ATGCCATATCCCAAATATGATCTTACA
84659083 CATAGTCTCA
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAAATATGATCTTACATGTAATCTCATATCG
Found at i:84663236 original size:37 final size:37
Alignment explanation
Indices: 84663195--84663268 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
84663185 TGTTGAATGA
84663195 TTGATTTTGCATAGTAATGTTGAATATGTTTATGAAT
1 TTGATTTTGCATAGTAATGTTGAATATGTTTATGAAT
84663232 TTGATTTTGCATAGTAATGTTGAATATGTTTATGAAT
1 TTGATTTTGCATAGTAATGTTGAATATGTTTATGAAT
84663269 AATACATGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.49
Consensus pattern (37 bp):
TTGATTTTGCATAGTAATGTTGAATATGTTTATGAAT
Found at i:84663755 original size:14 final size:15
Alignment explanation
Indices: 84663738--84663768 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
84663728 AATTCTTTCA
84663738 ATTCTATA-GGAGCT
1 ATTCTATACGGAGCT
84663752 ATTCTATACGGAGCT
1 ATTCTATACGGAGCT
84663767 AT
1 AT
84663769 AGATATTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (15 bp):
ATTCTATACGGAGCT
Found at i:84672304 original size:39 final size:39
Alignment explanation
Indices: 84672250--84672416 Score: 253
Period size: 39 Copynumber: 4.3 Consensus size: 39
84672240 TTCAGTGATG
* *
84672250 ATTATATCCGGACTTAGGGTCCGCAGGCTATATGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
*
84672289 ATTATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
* *
84672328 ATTATATCCAGACTTAAGGTCTGCAGGCTATGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
* *
84672367 ATTATAACCAGACTTAAGGTCCGCAGGCTATGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
* *
84672406 AATATGTCCGG
1 ATTATATCCGG
84672417 GCTAAAATCC
Statistics
Matches: 118, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 118 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
Found at i:84672443 original size:78 final size:78
Alignment explanation
Indices: 84672269--84672454 Score: 200
Period size: 78 Copynumber: 2.4 Consensus size: 78
84672259 GGACTTAGGG
* * * *
84672269 TCCGCAGGCTAT-ATGCTGGAATTATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTAT
1 TCCGCAGGCTATGA-GCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAATAT
**
84672333 ATCCAGACTTAAGG
65 ATCCAGACTTAAAA
* * *
84672347 TCTGCAGGCTATGTGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATG
1 TCCGCAGGCTATGAGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATA
* *
84672412 TCCGGGC-TAAAA
66 TCCAGACTTAAAA
* *
84672424 TCCCGTAGGCT-TCGAGCTGGTATTAT-ACCAG
1 T-CCGCAGGCTAT-GAGCTGGAATTATAACCAG
84672455 GTTTAAATTT
Statistics
Matches: 90, Mismatches: 15, Indels: 7
0.80 0.13 0.06
Matches are distributed among these distances:
77 10 0.11
78 80 0.89
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (78 bp):
TCCGCAGGCTATGAGCTGGAATTATAACCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAATATA
TCCAGACTTAAAA
Found at i:84681549 original size:18 final size:18
Alignment explanation
Indices: 84681526--84681568 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
84681516 TTTGCATATG
84681526 GCTTACTAAGCTCTTAAA
1 GCTTACTAAGCTCTTAAA
*
84681544 GCTTACTAAGCTTTTAAA
1 GCTTACTAAGCTCTTAAA
84681562 GCTTACT
1 GCTTACT
84681569 TTATGTGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (18 bp):
GCTTACTAAGCTCTTAAA
Found at i:84693742 original size:48 final size:48
Alignment explanation
Indices: 84693622--84693758 Score: 163
Period size: 48 Copynumber: 2.8 Consensus size: 48
84693612 AAGAGATTTC
* *
84693622 GTGTAAGACCATGTCTGGGACATGGCATCGGC-ATCCGAGATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GATATATGTGCCA
* *
84693671 GTGTAA-AGCCATGTCTGGAACATGGCATCAGCGATGATATATGTGCCA
1 GTGTAAGA-CCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
* *
84693719 -TCGTAAGACCAAGTCTGGGACATGGCATTGGCGATGATAT
1 GT-GTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
84693759 GTGGAATCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
47 1 0.01
48 44 0.58
49 29 0.38
50 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCA
Found at i:84702239 original size:46 final size:45
Alignment explanation
Indices: 84702188--84702354 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 45
84702178 GACGAGTGCT
84702188 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCC
* * **
84702234 AGTGTAAGACTTGTCTGGGACATGCATCAGCCTCGAGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGAGCC
* * * * * *
84702280 AGTGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GAGCC
* *
84702324 AGTGTAAGACATGTCTAGGACATGCGTCAGC
1 AGTGTAAGACATGTCTGGGACATGCATCAGC
84702355 ACGGTTACAT
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
43 1 0.01
44 32 0.31
46 67 0.66
47 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCC
Found at i:84703380 original size:28 final size:28
Alignment explanation
Indices: 84703323--84703380 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
84703313 TTCTTCTAGA
* *
84703323 TTATATTCTTGGATTTCTGGTATAGTCT
1 TTATATTCTTGGATTTCTGATATAGGCT
* *
84703351 TTATA-TCTTGGAATTTCTTATATTGGCT
1 TTATATTCTTGG-ATTTCTGATATAGGCT
84703379 TT
1 TT
84703381 TCTCTCGTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.19, C:0.10, G:0.16, T:0.55
Consensus pattern (28 bp):
TTATATTCTTGGATTTCTGATATAGGCT
Found at i:84709528 original size:23 final size:22
Alignment explanation
Indices: 84709498--84709541 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
84709488 TCTCAATTCA
*
84709498 TAAATAAATTCATACCAAAACT
1 TAAATAAAATCATACCAAAACT
*
84709520 TAAACTAAAATCATACCTAAAC
1 TAAA-TAAAATCATACCAAAAC
84709542 ATATGATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (22 bp):
TAAATAAAATCATACCAAAACT
Found at i:84710288 original size:42 final size:43
Alignment explanation
Indices: 84710184--84710292 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
84710174 TATACAATGC
* * *
84710184 CAAC-GTCCCAGACGTGGTCTTACATGTAATCAAACATCGACG
1 CAACTGTCCCAGACATGGTCTTACACGAAATCAAACATCGACG
* *
84710226 CAACTGTCCCAGACAGGGTCTTACACGAAATCAAATA-CGACG
1 CAACTGTCCCAGACATGGTCTTACACGAAATCAAACATCGACG
* *
84710268 TCGA-TGTCCCAAACATGGTCTTACA
1 -CAACTGTCCCAGACATGGTCTTACA
84710293 TGTCAAACAG
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
42 28 0.49
43 29 0.51
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.21
Consensus pattern (43 bp):
CAACTGTCCCAGACATGGTCTTACACGAAATCAAACATCGACG
Found at i:84710893 original size:28 final size:28
Alignment explanation
Indices: 84710837--84710888 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
84710827 CATTTCATTT
* *
84710837 ATTTCACATTTTAGTCCCTTATTTACAA
1 ATTTCACAATTTAGTCCCATATTTACAA
84710865 ATTTCACAATTTAG-CCCAT-TTTAC
1 ATTTCACAATTTAGTCCCATATTTAC
84710889 TCAAAATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 4 0.18
28 13 0.59
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (28 bp):
ATTTCACAATTTAGTCCCATATTTACAA
Found at i:84711532 original size:20 final size:20
Alignment explanation
Indices: 84711507--84711547 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
84711497 TGTATGATTT
84711507 ATGAAAACCTATCATTTTAA
1 ATGAAAACCTATCATTTTAA
84711527 ATGAAAACCTATCATTTTAA
1 ATGAAAACCTATCATTTTAA
84711547 A
1 A
84711548 ATTAAGTTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.34
Consensus pattern (20 bp):
ATGAAAACCTATCATTTTAA
Found at i:84715024 original size:40 final size:40
Alignment explanation
Indices: 84714950--84715170 Score: 304
Period size: 40 Copynumber: 5.6 Consensus size: 40
84714940 AACCCAAGTA
* * *
84714950 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
84714989 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
84715029 CC-TCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
84715068 CCTTCGGGACTTAGCCTGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* * *
84715108 CCTTCAGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
84715148 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
84715171 CATTCGAATA
Statistics
Matches: 161, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
39 47 0.29
40 111 0.69
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:84715154 original size:80 final size:80
Alignment explanation
Indices: 84714950--84715170 Score: 322
Period size: 79 Copynumber: 2.8 Consensus size: 80
84714940 AACCCAAGTA
* * * *
84714950 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
*
84715013 GTCAATAGCACAAAAG
65 ATCAATAGCACAAAAG
*
84715029 CC-TCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCTGGATATAA
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
*
84715093 TCAATAGCACAAATG
66 TCAATAGCACAAAAG
* * *
84715108 CCTTCAGGACTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
84715171 CATTCGAATA
Statistics
Matches: 128, Mismatches: 11, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
78 10 0.08
79 60 0.47
80 58 0.45
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAA
TCAATAGCACAAAAG
Found at i:84720218 original size:39 final size:40
Alignment explanation
Indices: 84720104--84720232 Score: 190
Period size: 40 Copynumber: 3.2 Consensus size: 40
84720094 GCTACTCGTT
84720104 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCA
* *
84720144 CAAATGCCTTCGGGACGTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* * *
84720184 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
84720223 CAAATGCCTT
1 CAAATGCCTT
84720233 TGGATCTTAG
Statistics
Matches: 81, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 31 0.38
40 48 0.59
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
Found at i:84738342 original size:68 final size:63
Alignment explanation
Indices: 84738195--84738342 Score: 147
Period size: 63 Copynumber: 2.3 Consensus size: 63
84738185 ATATAGTTCG
* *
84738195 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGTGACCTAGCCAATTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGCCAATATATCTCGTA
* * * * *
84738258 GCTCTCCTGT-CTACATGGTGTACACAT-AGTATCACCCATGCGACCTATCTACATCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACAC-TCAGTACCACCCATGCGACCTAGC--CA--AT-ATATC
*
84738321 TTGTA
59 TCGTA
84738326 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
84738343 ATGTGTGCTC
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
62 1 0.01
63 40 0.59
64 1 0.01
65 2 0.03
67 2 0.03
68 21 0.31
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACTCAGTACCACCCATGCGACCTAGCCAATATATCTCGTA
Found at i:84745779 original size:29 final size:29
Alignment explanation
Indices: 84745713--84745808 Score: 149
Period size: 29 Copynumber: 3.3 Consensus size: 29
84745703 AAGTATACAT
* *
84745713 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
84745741 ATATTCATATGGCTCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
84745770 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
84745799 ACATTCATAT
1 ACATTCATAT
84745809 ACATGCTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 20 0.33
29 41 0.67
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:84751061 original size:26 final size:27
Alignment explanation
Indices: 84751012--84751075 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
84751002 ATTTACTAAA
* *
84751012 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCTAGGTATCAAAATTACCATT
84751039 ATACCCCTAGGTA-CAAAATTACCATT
1 ATACCCCTAGGTATCAAAATTACCATT
*
84751065 ATACCCTTAGG
1 ATACCCCTAGG
84751076 GTTAATTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 22 0.65
27 12 0.35
ACGTcount: A:0.38, C:0.25, G:0.09, T:0.28
Consensus pattern (27 bp):
ATACCCCTAGGTATCAAAATTACCATT
Found at i:84751224 original size:27 final size:27
Alignment explanation
Indices: 84751181--84751291 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
84751171 GGAAACATTT
* *
84751181 TGGTGGCTTTGCCACAAATATCTGATC
1 TGGTGGCTCTACCACAAATATCTGATC
*
84751208 TGGTGGCTCTACTACAAATATCT-ATTTC
1 TGGTGGCTCTACCACAAATATCTGA--TC
* *
84751236 CGATGGCTCTACCAC-AATATCTGTATC
1 TGGTGGCTCTACCACAAATATCTG-ATC
* ** *
84751263 TGGTGACTCTGTCAC-AATATCTGTTC
1 TGGTGGCTCTACCACAAATATCTGATC
84751289 TGG
1 TGG
84751292 CAGCCATGCT
Statistics
Matches: 68, Mismatches: 12, Indels: 9
0.76 0.13 0.10
Matches are distributed among these distances:
26 6 0.09
27 47 0.69
28 14 0.21
29 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (27 bp):
TGGTGGCTCTACCACAAATATCTGATC
Found at i:84758816 original size:39 final size:39
Alignment explanation
Indices: 84758772--84759079 Score: 481
Period size: 39 Copynumber: 7.9 Consensus size: 39
84758762 TATCAACACA
* *
84758772 AAGCCTGCTGGACTTTAACCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
84758811 AAGCCTGTGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
84758850 AAGCCTGAGGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* *
84758889 AAGCCTGCGGGACTTTGGCCCGGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
84758928 AAGCCTGCAGGACTTTAGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * * * *
84758967 AAGCCTGCGAGACTTTGGCCCGAATATATTTCCTGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
84759006 AAGCCTGCGGGACTTTCGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
84759045 AAGCCTGCGGGACTTTAACCCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
84759080 TGTCTTGCAT
Statistics
Matches: 244, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 244 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:84764696 original size:39 final size:39
Alignment explanation
Indices: 84764652--84764962 Score: 531
Period size: 39 Copynumber: 8.1 Consensus size: 39
84764642 ATTATATTAT
* *
84764652 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
84764691 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
84764730 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
84764769 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
84764808 CAGCACGAAGCCT--GGGACTTTA-CCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
84764844 CAGCACGAAGCCTGCGGGACTTTGGCCC-GATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
84764882 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
84764921 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
84764960 CAG
1 CAG
84764963 TGTCTTGCAT
Statistics
Matches: 256, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
36 26 0.10
37 8 0.03
38 44 0.17
39 178 0.70
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.21
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:84771036 original size:79 final size:81
Alignment explanation
Indices: 84770927--84771109 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
84770917 TACTCGTTCA
* *
84770927 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
84770990 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
84771007 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
84771070 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
84771086 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
84771110 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:84771109 original size:40 final size:40
Alignment explanation
Indices: 84770906--84771109 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
84770896 CGGAATTTAA
** *
84770906 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84770946 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84770986 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
84771025 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
84771065 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
84771105 CCGGA
1 CCGGA
84771110 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:84772401 original size:85 final size:85
Alignment explanation
Indices: 84772272--84772450 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
84772262 TATTTTATTT
*
84772272 CCCATGCTCTTTATTTTATTCATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
84772337 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
84772357 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
84772422 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
84772442 CCCATGCTC
1 CCCATGCTC
84772451 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:84778962 original size:40 final size:40
Alignment explanation
Indices: 84778918--84779101 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
84778908 GCTACTCATT
*
84778918 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
84778958 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
84778998 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* ** * * *
84779037 CAAATGCCTTC-GGATCTTAGTCCGAATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
84779078 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
84779102 ACATCATTCA
Statistics
Matches: 118, Mismatches: 18, Indels: 16
0.78 0.12 0.11
Matches are distributed among these distances:
38 2 0.02
39 29 0.25
40 73 0.62
41 14 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:84779019 original size:79 final size:80
Alignment explanation
Indices: 84778920--84779102 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
84778910 TACTCATTCA
* * *
84778920 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGA
*
84778983 ATTTAGTAACTT-GCACC
64 ATATAGTAACTTAGCA-C
* **
84779000 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGAAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGAAT
* *
84779064 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
84779079 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
84779103 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 27 0.30
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGAAT
ATAGTAACTTAGCAC
Found at i:84780392 original size:85 final size:85
Alignment explanation
Indices: 84780263--84780441 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
84780253 TATTTTATTG
84780263 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
84780328 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
84780348 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
84780413 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
84780433 CCCATGCTC
1 CCCATGCTC
84780442 ATGGCCGGCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:84782215 original size:27 final size:27
Alignment explanation
Indices: 84782185--84782246 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
84782175 ATTTACTAAA
84782185 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATTACCATT
* *
84782212 ATACCACT-AGGTGCAAAATTACCATT
1 ATACCCCTAAGATGCAAAATTACCATT
84782238 ATACCCCTA
1 ATACCCCTA
84782247 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 21 0.70
27 7 0.23
ACGTcount: A:0.39, C:0.26, G:0.08, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATTACCATT
Found at i:84782391 original size:28 final size:27
Alignment explanation
Indices: 84782351--84782403 Score: 97
Period size: 28 Copynumber: 1.9 Consensus size: 27
84782341 GGAGGAAGCG
84782351 TTCTGGTGGCTCTACCACAAATATCTAT
1 TTCTGGTGGCTCTACCAC-AATATCTAT
84782379 TTCTGGTGGCTCTACCACAATATCT
1 TTCTGGTGGCTCTACCACAATATCT
84782404 GTTCTGGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (27 bp):
TTCTGGTGGCTCTACCACAATATCTAT
Found at i:84787005 original size:23 final size:22
Alignment explanation
Indices: 84786975--84787018 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
84786965 TCTCAATTCA
*
84786975 TAAATAAATTCATACCAAAACT
1 TAAATAAAATCATACCAAAACT
*
84786997 TAAACTAAAATCATACCTAAAC
1 TAAA-TAAAATCATACCAAAAC
84787019 ATATGATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (22 bp):
TAAATAAAATCATACCAAAACT
Found at i:84789154 original size:42 final size:44
Alignment explanation
Indices: 84789077--84789198 Score: 132
Period size: 42 Copynumber: 2.8 Consensus size: 44
84789067 AGATGTGGTC
*
84789077 TTACATGT-AATCAAATATCGATGCCACTGTCCCAGACAGGGTA
1 TTACACGTAAATCAAATATCGATGCCACTGTCCCAGACAGGGTA
* *
84789120 TTACACG-AAATCAAATA-CGATGCCGA-TGTCCCAGACATGGTC
1 TTACACGTAAATCAAATATCGATGCC-ACTGTCCCAGACAGGGTA
84789162 TTACACGTAAATATCAAAT-T-GATGCCAAC-GTCCCAGA
1 TTACACGT-AA-ATCAAATATCGATGCC-ACTGTCCCAGA
84789199 TGTGGTCTTA
Statistics
Matches: 68, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
42 28 0.41
43 16 0.24
44 17 0.25
45 7 0.10
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (44 bp):
TTACACGTAAATCAAATATCGATGCCACTGTCCCAGACAGGGTA
Found at i:84791458 original size:55 final size:54
Alignment explanation
Indices: 84791349--84791604 Score: 229
Period size: 55 Copynumber: 4.8 Consensus size: 54
84791339 CATTAGGGTT
* * * *
84791349 CAAGGATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTT-TCTAAGG
1 CAAGGGTACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCTATAAGG
* * * *
84791404 CAAGGGAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGG
1 CAAGGGTACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGG
* * * * *
84791459 TAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG
1 CAAGGGTACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
* * * * *
84791512 CAAGGCTACCATGTAAGACCATGTCAATACATGGCAATGGTAAGTT-T-CAA--
1 CAAGGGTACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
* * * * *
84791562 -AAGGATACCATGTAAGACCATGACAAGTCATGGGAATGGTAAG
1 CAAGGGTACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
84791605 GTACCCGTGT
Statistics
Matches: 166, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
49 38 0.23
52 2 0.01
53 46 0.28
54 8 0.05
55 72 0.43
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CAAGGGTACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGG
Found at i:84791556 original size:108 final size:110
Alignment explanation
Indices: 84791357--84791557 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
84791347 TTCAAGGATA
* *
84791357 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGGAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGCAACCATGTAAGA
*
84791422 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGTAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
* * *
84791467 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGCAACCATGTAAG
* *
84791529 ACCATGTCAATACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
84791558 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGCAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGTAAAGGTC
Found at i:84793043 original size:20 final size:19
Alignment explanation
Indices: 84793022--84793103 Score: 84
Period size: 18 Copynumber: 4.6 Consensus size: 19
84793012 ATATGTAGTA
84793022 AAAATATATAACATATAAT
1 AAAATATATAACATATAAT
84793041 -AAATATA-AAC--ATAAT
1 AAAATATATAACATATAAT
* * * *
84793056 AGAATAAATAATATATATT
1 AAAATATATAACATATAAT
84793075 AAAA-ATATAACATATAAT
1 AAAATATATAACATATAAT
*
84793093 AAAATTTATAA
1 AAAATATATAA
84793104 AGATGTATAT
Statistics
Matches: 49, Mismatches: 9, Indels: 10
0.72 0.13 0.15
Matches are distributed among these distances:
15 5 0.10
16 5 0.10
17 5 0.10
18 22 0.45
19 12 0.24
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (19 bp):
AAAATATATAACATATAAT
Found at i:84793125 original size:54 final size:52
Alignment explanation
Indices: 84792997--84793125 Score: 124
Period size: 52 Copynumber: 2.5 Consensus size: 52
84792987 ATGAATATGG
*
84792997 TAAA-ATAA-ATAAT-ATATATGTAGTAAAAATATATAACATATAATAAATA
1 TAAACATAATATAATAATATATATAGTAAAAATATATAACATATAATAAATA
* *
84793046 TAAACATAATAGAATAAATAATATATA-TTAAAA-ATATAACATATAATAAAATTTA
1 TAAACATAATATAAT-AAT-ATATATAGTAAAAATATATAACATATAAT-AAA--TA
* *
84793101 TAAAGATGTATATAATAATATATAT
1 TAAACAT-AATATAATAATATATAT
84793126 TATCTTATAT
Statistics
Matches: 65, Mismatches: 6, Indels: 13
0.77 0.07 0.15
Matches are distributed among these distances:
49 4 0.06
50 4 0.06
51 4 0.06
52 14 0.22
53 10 0.15
54 12 0.18
55 11 0.17
56 6 0.09
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (52 bp):
TAAACATAATATAATAATATATATAGTAAAAATATATAACATATAATAAATA
Found at i:84798303 original size:25 final size:25
Alignment explanation
Indices: 84798274--84798321 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
84798264 CCTTATAATA
* * *
84798274 TAAAAATGATCATTTTTCCCCTAAG
1 TAAAAATGACCATTATACCCCTAAG
84798299 TAAAAATGACCATTATACCCCTA
1 TAAAAATGACCATTATACCCCTA
84798322 GGGTTTAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (25 bp):
TAAAAATGACCATTATACCCCTAAG
Found at i:84798468 original size:23 final size:23
Alignment explanation
Indices: 84798438--84798511 Score: 112
Period size: 23 Copynumber: 3.1 Consensus size: 23
84798428 AGGAAGTGCA
84798438 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
84798461 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
84798484 AAAAAGGCTTTTTGCCCCAGTTATT
1 -AAAGGGC-TTATGCCCCAGTTATT
84798509 AAA
1 AAA
84798512 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
23 23 0.49
24 9 0.19
25 15 0.32
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:84798528 original size:25 final size:25
Alignment explanation
Indices: 84798437--84798532 Score: 121
Period size: 25 Copynumber: 4.0 Consensus size: 25
84798427 GAGGAAGTGC
84798437 AAAAG-GGCTTATGCCCCAGTTATT
1 AAAAGAGGCTTATGCCCCAGTTATT
84798461 -AAAG-GGCTTATGCCCCAGTTATT
1 AAAAGAGGCTTATGCCCCAGTTATT
*
84798484 AAAA-AGGCTTTTTGCCCCAGTTATT
1 AAAAGAGGC-TTATGCCCCAGTTATT
*
84798509 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGAGGCTTATGCC-CCAGTTAT
84798533 ACGAAAGCAA
Statistics
Matches: 64, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
23 23 0.36
24 10 0.16
25 27 0.42
26 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGAGGCTTATGCCCCAGTTATT
Found at i:84798757 original size:31 final size:31
Alignment explanation
Indices: 84798722--84798784 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
84798712 CATTTACAGT
84798722 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
84798753 AAAGGCTTCGGCCGAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
84798784 A
1 A
84798785 GTGTGAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:84806383 original size:11 final size:11
Alignment explanation
Indices: 84806347--84806402 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
84806337 CATGGTATAT
84806347 ATGATATGCAC
1 ATGATATGCAC
* *
84806358 ATGACATG--T
1 ATGATATGCAC
84806367 ATGATATGCAC
1 ATGATATGCAC
*
84806378 ATGATATG--T
1 ATGATATGCAC
84806387 ATGATATGCAC
1 ATGATATGCAC
84806398 ATGAT
1 ATGAT
84806403 GTATCATAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:84806402 original size:20 final size:20
Alignment explanation
Indices: 84806336--84806402 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
84806326 ATTTTGATAA
* *
84806336 ACATGGTATATATGATATGC
1 ACATGATATGTATGATATGC
*
84806356 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
84806376 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
84806396 ACATGAT
1 ACATGAT
84806403 GTATCATAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:84806416 original size:40 final size:39
Alignment explanation
Indices: 84806336--84806410 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 39
84806326 ATTTTGATAA
* *
84806336 ACATGGTATATATGATATGCACATGACATGTATGATATGC
1 ACATGATATATATGATATGCACATGA-ATGTATCATATGC
*
84806376 ACATGATATGTATGATATGCACATG-ATGTATCATA
1 ACATGATATATATGATATGCACATGAATGTATCATA
84806411 AATGCATTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
38 9 0.28
40 23 0.72
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (39 bp):
ACATGATATATATGATATGCACATGAATGTATCATATGC
Found at i:84806529 original size:53 final size:53
Alignment explanation
Indices: 84806449--84806550 Score: 204
Period size: 53 Copynumber: 1.9 Consensus size: 53
84806439 GGAGGAAGTG
84806449 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTATGCC
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTATGCC
84806502 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTA
84806551 AAAGGGCTTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (53 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTATGCC
Found at i:84806581 original size:23 final size:24
Alignment explanation
Indices: 84806450--84806595 Score: 176
Period size: 23 Copynumber: 6.0 Consensus size: 24
84806440 GAGGAAGTGC
84806450 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
84806474 -AAAGGGCTTATGCCCCAGTTATTAT
1 AAAAGGGCTTATGCCCCAGTTA-T-T
84806499 GCCCAAAAGGGCTTATGCCCCAGTTATT
1 ----AAAAGGGCTTATGCCCCAGTTATT
84806527 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
84806550 AAAAGGGCTT-TG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
84806572 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
84806596 ATGATAAAGC
Statistics
Matches: 109, Mismatches: 1, Indels: 23
0.82 0.01 0.17
Matches are distributed among these distances:
22 16 0.15
23 50 0.46
24 11 0.10
25 9 0.08
28 1 0.01
29 1 0.01
30 21 0.19
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:84806592 original size:47 final size:47
Alignment explanation
Indices: 84806450--84806595 Score: 172
Period size: 53 Copynumber: 3.0 Consensus size: 47
84806440 GAGGAAGTGC
*
84806450 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTAGGCCCCAGTTA-T-T
*
84806499 GCCCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATT
1 ----AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTAGGCCCCAGTTATT
84806550 AAAAGGGCTT-TG-CCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATT-AAAG-GGCTTAGGCC-CCAGTTAT
84806596 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 12
0.87 0.01 0.12
Matches are distributed among these distances:
45 10 0.11
46 11 0.12
47 21 0.24
51 1 0.01
52 1 0.01
53 45 0.51
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTAGGCCCCAGTTATT
Found at i:84806818 original size:30 final size:31
Alignment explanation
Indices: 84806784--84806846 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
84806774 CGTTTACAGT
84806784 AAAGGCTTCGGCCCAGTAATATG-AATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
84806814 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
84806845 AA
1 AA
84806847 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:84811306 original size:50 final size:50
Alignment explanation
Indices: 84811242--84811475 Score: 219
Period size: 50 Copynumber: 4.7 Consensus size: 50
84811232 CTGGTATGCA
*
84811242 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGAACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGAACACG
* *
84811292 TAGTAGCCTGCACTTAGTACTAAACATGTGACCTAACCA--TGAGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTG-GA-ACACG
* * * * * * *
84811342 TAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGCTATCAGGTACTCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CAATCTGGAACACG
* * * ** *
84811393 TAGTAGCCTACACTTAGTACTACACATGTGACCTGAAACCATTTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACAATCTGGAACACG
*
84811445 TAGTAGCCTGCA--TA-TACTACACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT
84811476 GAAACCATTT
Statistics
Matches: 152, Mismatches: 24, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
48 2 0.01
49 19 0.12
50 74 0.49
51 34 0.22
52 20 0.13
53 3 0.02
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGGAACACG
Found at i:84811420 original size:101 final size:101
Alignment explanation
Indices: 84811240--84811475 Score: 275
Period size: 100 Copynumber: 2.4 Consensus size: 101
84811230 CTCTGGTATG
* * * * *
84811240 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGAACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCAGGAACACATAGTAGCCTACAC
*
84811305 TTAGTACTAAACATGTGACCT-AACCATGAGATACA
66 TTAGTACTAAACATGTGACCTAAACCATGAGAAACA
* * * * *
84811340 CGTAGTAGCCTGCACTTAGTACTACACACGTGA-TTGAAGCTATCAGGTACTCATAGTAGCCTAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT-AA-CAATCAGGAACACATAGTAGCCTAC
* ***
84811404 ACTTAGTACTACACATGTGACCTGAAACCATTTTAAACA
64 ACTTAGTACTAAACATGTGACCT-AAACCATGAGAAACA
84811443 CATAGTAGCCTGCA--TA-TACTACACACGTGACCT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT
84811476 GAAACCATTT
Statistics
Matches: 114, Mismatches: 17, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
99 1 0.01
100 46 0.40
101 44 0.39
103 23 0.20
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAATCAGGAACACATAGTAGCCTACAC
TTAGTACTAAACATGTGACCTAAACCATGAGAAACA
Found at i:84811473 original size:49 final size:49
Alignment explanation
Indices: 84811391--84811517 Score: 209
Period size: 49 Copynumber: 2.5 Consensus size: 49
84811381 ATCAGGTACT
* *
84811391 CATAGTAGCCTACACTTAGTACTACACATGTGACCTGAAACCATTTTAAACA
1 CATAGTAGCCTGCA--TA-TACTACACACGTGACCTGAAACCATTTTAAACA
84811443 CATAGTAGCCTGCATATACTACACACGTGACCTGAAACCATTTTAAACA
1 CATAGTAGCCTGCATATACTACACACGTGACCTGAAACCATTTTAAACA
84811492 CATAGTAGCCTGCATATACTACACAC
1 CATAGTAGCCTGCATATACTACACAC
84811518 ATGTGTTCTC
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
49 58 0.79
50 2 0.03
52 13 0.18
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCATATACTACACACGTGACCTGAAACCATTTTAAACA
Found at i:84811496 original size:101 final size:100
Alignment explanation
Indices: 84811240--84811502 Score: 246
Period size: 101 Copynumber: 2.6 Consensus size: 100
84811230 CTCTGGTATG
* * * * * * *
84811240 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT--AACAATCTGGAACACGTAGTAGCCTGC
1 CATAGTAGCCTGCAC-TAGTACTACACACGTGA-CTGAAACCATCAGAAACACATAGTAGCCTAC
*
84811303 ACTTAGTACTAAACATGTGACCTAACCATGAGATACA
64 ACTTAGTACTAAACATGTGACCTAACCATGAGAAACA
* * * * ** *
84811340 CGTAGTAGCCTGCACTTAGTACTACACACGTGATTGAAGCTATCAGGTACTCATAGTAGCCTACA
1 CATAGTAGCCTGCAC-TAGTACTACACACGTGACTGAAACCATCAGAAACACATAGTAGCCTACA
* ***
84811405 CTTAGTACTACACATGTGACCTGAAACCATTTTAAACA
65 CTTAGTACTAAACATGTGACCT--AACCATGAGAAACA
***
84811443 CATAGTAGCCTGCA-TA-TACTACACACGTGACCTGAAACCATTTTAAACACATAGTAGCCT
1 CATAGTAGCCTGCACTAGTACTACACACGTGA-CTGAAACCATCAGAAACACATAGTAGCCT
84811503 GCATATACTA
Statistics
Matches: 132, Mismatches: 26, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
99 1 0.01
100 44 0.33
101 64 0.48
103 23 0.17
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTGCACTAGTACTACACACGTGACTGAAACCATCAGAAACACATAGTAGCCTACAC
TTAGTACTAAACATGTGACCTAACCATGAGAAACA
Found at i:84811518 original size:25 final size:25
Alignment explanation
Indices: 84811440--84811519 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
84811430 ACCATTTTAA
84811440 ACACATAGTAGCCTGCATATACTAC
1 ACACATAGTAGCCTGCATATACTAC
* * * ** *
84811465 ACACGT-G-A-CCTGAAACCATTTTAA
1 ACACATAGTAGCCTG-CA-TATACTAC
84811489 ACACATAGTAGCCTGCATATACTAC
1 ACACATAGTAGCCTGCATATACTAC
84811514 ACACAT
1 ACACAT
84811520 GTGTTCTCAC
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
22 4 0.11
23 2 0.05
24 10 0.26
25 16 0.42
26 2 0.05
27 4 0.11
ACGTcount: A:0.38, C:0.28, G:0.11, T:0.24
Consensus pattern (25 bp):
ACACATAGTAGCCTGCATATACTAC
Found at i:84815735 original size:62 final size:62
Alignment explanation
Indices: 84815624--84815743 Score: 159
Period size: 62 Copynumber: 1.9 Consensus size: 62
84815614 TGTCATACTA
* * * * *
84815624 AGCTATGGTCATAGACCTTAATCCCTATGTTTAATGTCCTAGTGGACTCCACTAGTTAGTTG
1 AGCTATGGTCATACACCTTAATCCCCATGTTTAACGTCCTAGCGAACTCCACTAGTTAGTTG
* * * *
84815686 AGCTATGGTCTTACACCTTAATCCCCATGTTTAACGTCTTGGCGAACTCCACTGGTTA
1 AGCTATGGTCATACACCTTAATCCCCATGTTTAACGTCCTAGCGAACTCCACTAGTTA
84815744 CCATAATCAA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 49 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.34
Consensus pattern (62 bp):
AGCTATGGTCATACACCTTAATCCCCATGTTTAACGTCCTAGCGAACTCCACTAGTTAGTTG
Found at i:84820540 original size:1 final size:1
Alignment explanation
Indices: 84820534--84822281 Score: 1489
Period size: 1 Copynumber: 1748.0 Consensus size: 1
84820524 GAAAGTCTCA
84820534 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
84820599 TTTTTTTTTTTTATTTATTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* **
84820664 TTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*** **
84820729 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTTTTAAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** *
84820794 TTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTATTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * ** * * * * * * *
84820859 TTTTATATAATATTTATTTTTTTTTTTTTTTTTTTTTATTTTTTTTATATTTATTATTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** * * * * ** *
84820924 TTTATTTTTAATATTTTTTTTTTTTTTTTTTTTTTTTATGTGTTTGGTTTTTTTTTTTTTTTTAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * ** *** ** ** *****
84820989 TTTTTTTTTTATTTTTTTTTATTATTTTGTTTGATTTTTTTTTACATTAATTTTTTGCTAAAACT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*** * * * * *** * ** ** * * ** ** *
84821054 AGATATATTCTATAAATTTGTTTTTGATTTAATATTTTTTTTTTGTTTTAGTTTTTCGTTTTTCT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** * *** * * ** * ******
84821119 TATTACTATTTTTTTTAACTATTTTTTTTTATTTAATTTTATTTTTTTTTTTTTTTTTTACACAC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
**** * * *
84821184 CACATTTTTTTTTTTTTTTTTTTTTTTTTTGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTATT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * *** * ** * *
84821249 TTTTTATTTTTTGTTTTTTTTTTTTTTTTTTTTTATTATTACATTTTTTTTTATAATTATATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** * * * * * * **
84821314 TTTTTTTTTTTTATTTTTTTTTTTTAATTTATTTATTTTTTTTTTTATTATATTTGTTTAATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * ** * * *** **
84821379 TTTTTTTGTTTTCTAATTTTTTTATTTTTTTTTTTTTATTTTTTTTTAAATTTTTTTTAATTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * * *
84821444 TTTAATTTGTTTTTTTTTTTTTATATTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
84821509 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * *
84821574 TTTCTTTTTTCTTTATTTTTTTTTTTTTTTTTTTTTTTATCTTTATTCTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * ** * *** * **
84821639 TTTTCTTTTTTTTTGTTTTTTTTTTTTTTATTTTTTTTTTATTAATTATTTAACTTTTTATTAAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** **
84821704 TTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
84821769 TTTTTTTTTTTTTTATTTTTATTATTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *
84821834 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTATTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* *** * * * ** * *
84821899 TTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTAAATTTTTTTATATTTATTTTTTAATATTATTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
84821964 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** * ** * ** *
84822029 TTTTTTTTGTTTTTAATTTTTTTTTTTTTTATAATTTTTTTTTTTATAATTATTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** * * * * *
84822094 TTTTAATTTTTTTTTTTTTTTTTTTTTTATTTTTTTATTTTTTTTTTTTTTTTCTTTATTATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * ** ** *
84822159 ATTTTTTTATTTTTTTTTATTTTATTTTTTTTTTATTTTTTTTTTTTATTTTTTAATTTTAATAT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * **** * * * *
84822224 TTTTATATTTTTTTTTAAAATTTTATTTTTTTTTTTATTTATTTTTTATTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
84822282 GTTTCATCCT
Statistics
Matches: 1408, Mismatches: 339, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 1408 1.00
ACGTcount: A:0.10, C:0.01, G:0.01, T:0.87
Consensus pattern (1 bp):
T
Found at i:84823370 original size:20 final size:19
Alignment explanation
Indices: 84823345--84823795 Score: 102
Period size: 19 Copynumber: 22.7 Consensus size: 19
84823335 TTATGCGTTC
*
84823345 TTTATTTTTTATTTTCTTTT
1 TTTATTTTTT-CTTTCTTTT
84823365 TTTATTTTTTCTTTCTTTT
1 TTTATTTTTTCTTTCTTTT
* *
84823384 TTT-TTTACTTCTTTCTTTCC
1 TTTATTT-TTTCTTTCTTT-T
* * ** * *
84823404 TCTCTTTTTTAATTATTTC
1 TTTATTTTTTCTTTCTTTT
* *
84823423 TTTATTTCTTATTT-TTTT
1 TTTATTTTTTCTTTCTTTT
*
84823441 TCTCTCTTCTTTTGC-TTCTTATT
1 T-T-TATT-TTTT-CTTTCTT-TT
*
84823464 TTTCTTTTTTCTTT-TTTT
1 TTTATTTTTTCTTTCTTTT
* *
84823482 CTT-TTTTTCCTTT-TTATT
1 TTTATTTTTTCTTTCTT-TT
*
84823500 TTCTTTGTTTTTC-TTCTCTTT
1 TT-TAT-TTTTTCTTTCT-TTT
* *
84823521 TTTCTTTTCTCTTTCATTTAT
1 TTTATTTTTTCTTTC-TTT-T
84823542 TTT-TGTGTTTT-TTT-TTTT
1 TTTAT-T-TTTTCTTTCTTTT
*
84823560 TCTT-TTTTCTTCTCTCTTTTTT
1 T-TTATTTT-TTCT-T-TCTTTT
*
84823582 TTTATTCATCTTT-TTTCTTCT
1 TTTATT--T-TTTCTTTCTTTT
* *
84823603 TTTCTTTCTTCTTTCTTTT
1 TTTATTTTTTCTTTCTTTT
*
84823622 TTCT-TTTCTTCTTTTCTTTCTT
1 TT-TATTTTTTC-TTTC-TT-TT
84823644 TTTATTTTTT-TTTCTTTAT
1 TTTATTTTTTCTTTCTTT-T
84823663 TTTATGGTTTGAGTTTCTTAATCTTCTCT
1 TTTA---TTT---TTTCTT--TCTT-T-T
* * *
84823692 TTATATTTCCCTTTATCTCTTCT
1 TT-TATTT---TTTCTTTCTTTT
84823715 TTT-TTTTTT-TTTCTTTT
1 TTTATTTTTTCTTTCTTTT
84823732 TTT-TTTTTT-TTT-TTTT
1 TTTATTTTTTCTTTCTTTT
*
84823748 TTTTTTTCTTTC-TT-TTTT
1 TTTATTT-TTTCTTTCTTTT
*
84823766 TTTCTTTTTTC-TTCTTTT
1 TTTATTTTTTCTTTCTTTT
84823784 TTT-TTTTTTCTT
1 TTTATTTTTTCTT
84823796 CTATTTGCTT
Statistics
Matches: 338, Mismatches: 39, Indels: 110
0.69 0.08 0.23
Matches are distributed among these distances:
16 7 0.02
17 47 0.14
18 48 0.14
19 73 0.22
20 49 0.14
21 49 0.14
22 28 0.08
23 7 0.02
24 3 0.01
25 8 0.02
26 2 0.01
27 7 0.02
28 4 0.01
29 4 0.01
30 2 0.01
ACGTcount: A:0.05, C:0.15, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTATTTTTTCTTTCTTTT
Found at i:84823460 original size:36 final size:35
Alignment explanation
Indices: 84823420--84823656 Score: 96
Period size: 36 Copynumber: 6.5 Consensus size: 35
84823410 TTTTAATTAT
*
84823420 TTCTTTATTTCTTATTTTTTTTCTCTCTTCTTTTGC
1 TTCTTTATTTCTT-TTTTTTTTCTCTCTTCTTTTCC
* * *
84823456 TTCTTATTTTTCTTTTTTCTTTT-TTTCTTTTTTTCC
1 TTCTT-TATTTCTTTTTT-TTTTCTCTCTTCTTTTCC
*
84823492 TT-TTTATTTTCTTTGTTTTTCTTCTCTTTTTTCTTTTCTC
1 TTCTTTA-TTTCTTT-TTTTT-TTCTC--TCTTCTTTTC-C
* * *
84823532 TTTCATTTATTTTTGTGTTTTTTTTTTTTCTT-TTTT-C
1 -TTC-TTTATTTCT-T-TTTTTTTTCTCTCTTCTTTTCC
* * * * * *
84823569 TTCTCTCTTTTTTTTTATTCATCTTTTTTCTTCTTTTCT
1 TTCTTTATTTCTTTTT-TT--T-TTCTCTCTTCTTTTCC
* *
84823608 TTC-TTCTTTCTTTTTTCTTTTCT-TCTT-TTCTTTC
1 TTCTTTATTTCTTTTTT-TTTTCTCTCTTCTT-TTCC
84823642 TT-TTTATTT-TTTTTT
1 TTCTTTATTTCTTTTTT
84823657 CTTTATTTTA
Statistics
Matches: 157, Mismatches: 21, Indels: 49
0.69 0.09 0.22
Matches are distributed among these distances:
33 11 0.07
34 17 0.11
35 21 0.13
36 31 0.20
37 23 0.15
38 15 0.10
39 15 0.10
40 4 0.03
41 2 0.01
42 7 0.04
43 10 0.06
44 1 0.01
ACGTcount: A:0.04, C:0.16, G:0.02, T:0.78
Consensus pattern (35 bp):
TTCTTTATTTCTTTTTTTTTTCTCTCTTCTTTTCC
Found at i:84823528 original size:33 final size:34
Alignment explanation
Indices: 84823423--84824035 Score: 109
Period size: 33 Copynumber: 17.7 Consensus size: 34
84823413 TAATTATTTC
* *
84823423 TTTATTTCTTATTTTTTTTC-TCTCTTCTTTTGCTT
1 TTTATTT-TTCTTTTTTTTCTTCTCTT-TTTTCCTT
* * *
84823458 CTTATTTTTCTTTTTTCTTTTTTTCTTTTTTTCCTT
1 TTTATTTTTCTTTTTT-TTCTTCTC-TTTTTTCCTT
84823494 TTTA-TTTTCTTTGTTTTTCTTCTCTTTTTT-CTT
1 TTTATTTTTCTTT-TTTTTCTTCTCTTTTTTCCTT
* * * *
84823527 TTCTCTTTCATT-TATTTTTGTGT-TTTTTTTTTTTCTTT
1 TT-TATTT--TTCT-TTTTT-T-TCTTCTCTTTTTTCCTT
* * * *
84823565 TTTCTTCTCTCTTTTTTTTTATTCATCTTTTTTCTTCT
1 TTTATT-TTTC-TTTTTTTTCTTC-TCTTTTTTCCT-T
* *
84823603 TTTCTTTCTTCTTTCTTTTTTCTTTTCTTCTTTT-CTT
1 TTTATTT-TTC-TT-TTTTTTCTTCTCTT-TTTTCCTT
* * * **
84823640 TCTT-TTTAT-TTTTTTTTCTT-TATTTTAT-GGT
1 T-TTATTTTTCTTTTTTTTCTTCTCTTTTTTCCTT
* * ** * *
84823671 TTGA-GTTTCTTAATCTTC-TCT-TTATATTTCC-C
1 TTTATTTTTCTTTTTTTTCTTCTCTT-T-TTTCCTT
* * * *
84823703 TTTATCTCTTCTTTTTTTTTTTTTCTTTTTT-TTT
1 TTTAT-TTTTCTTTTTTTTCTTCTCTTTTTTCCTT
* *
84823737 TTTTTTTTTTTTTTTTTTCTT-TCTTTTTT--TT
1 TTTATTTTTCTTTTTTTTCTTCTCTTTTTTCCTT
* * * *
84823768 TCTTTTTTCTTCTTTTTTTTTTTTTCTTCTATTTGCTT
1 T-TTATTT-TTCTTTTTTTTCTTCTCTT-T-TTTCCTT
* * *
84823806 TCTT-TTATTCTCTTTTTTCTTCTTTATTTTAGTCCTT
1 T-TTATTTTTCTTTTTTTTCTTCTCT-TTTT--TCCTT
* * *
84823843 CTCTT-TATTTCTTTTTTTTCTTTTCTTTTTTTATCTT
1 -T-TTATTTTTCTTTTTTTTCTTCTC-TTTTTT-CCTT
* * *
84823880 CTTT-TTTCTCTTTTATATCTT-TC-TTTTTCCTT
1 -TTTATTTTTCTTTTTTTTCTTCTCTTTTTTCCTT
* *
84823912 TTTAATTTTTATTATTTTT-TTC-C-TTTTTCTCTT
1 TTT-ATTTTTCTTTTTTTTCTTCTCTTTTTTC-CTT
* ** * *
84823945 TCTTCTACTTCTTTTTTTTC-T-T-TTCTCTCCTT
1 T-TTATTTTTCTTTTTTTTCTTCTCTTTTTTCCTT
* * * *
84823977 TTGTTTTTTTCTTTTGTTTGTTCT-TTTTTATGCTT
1 TT-TATTTTTCTTTTTTTTCTTCTCTTTTT-TCCTT
*
84824012 TCTTATCTTTT-TTTTTTTTTTTCT
1 T-TTAT-TTTTCTTTTTTTTCTTCT
84824036 GATTACTTTC
Statistics
Matches: 429, Mismatches: 89, Indels: 120
0.67 0.14 0.19
Matches are distributed among these distances:
30 6 0.01
31 20 0.05
32 50 0.12
33 73 0.17
34 42 0.10
35 51 0.12
36 66 0.15
37 53 0.12
38 55 0.13
39 13 0.03
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (34 bp):
TTTATTTTTCTTTTTTTTCTTCTCTTTTTTCCTT
Found at i:84823534 original size:49 final size:47
Alignment explanation
Indices: 84823466--84823907 Score: 171
Period size: 50 Copynumber: 8.9 Consensus size: 47
84823456 TTCTTATTTT
*
84823466 TCTTTTTTCTTTTTTTCTTTTTTTCCTTTTTATTTTCTTTGTTTTTCTTC
1 TCTTTTTTC-TTTTCTCTTTTTTT-CTTTTTATTTTCTTT-TTTTTCTTC
* * * *
84823516 TCTTTTTTCTTTTCTCTTTCATTTATTTTTGTGTTTTTTTTTTTTCTT-
1 TCTTTTTTCTTTTCTCTTT-TTTTCTTTTTAT-TTTCTTTTTTTTCTTC
*
84823564 T-TTTCTTCTCTCTTT-T-TTTTTATTCATCTTTT-TTCTTCTTTTCTTTCTTC
1 TCTTT-TT-TCT-TTTCTCTTTTT-TTC-T-TTTTATT-TTCTTTTTTTTCTTC
* * *
84823614 TTTCTTTTTTCTTTTCTTCTTTTCTTTCTTTTTATTTTTTTTTCTTTATTTTA
1 --TCTTTTTTCTTTTC-TCTTTT-TTTCTTTTTATTTTCTTTT-TTT-TCTTC
* ** * *
84823667 TGGTTTGAGTTTCTTAATCTTCTCTTTATATTTCCCTTTATCTCTTCTTTTTTTTTTTT
1 T-CTTT---TTTC-T--T-TTCTCTTT-T-TTTCTTTTTAT-T-TTCTTTTTTTTCTTC
*
84823726 TCTTTTTT-TTTT-T-TTTTTTT-TTTTT-TTTTCTTTCTTTTT-TTT
1 TCTTTTTTCTTTTCTCTTTTTTTCTTTTTATTTTCTTT-TTTTTCTTC
* * * *
84823768 TCTTTTTTCTTCTT-T-TTTTTTTTTTCTTCTATTTGCTTTCTTTTATTC
1 TCTTTTTTCTT-TTCTCTTTTTTTCTT-TT-TATTTTCTTTTTTTTCTTC
* * *
84823816 TCTTTTTTCTTCTT-TATTTTAGTCCTTCTCTTTA-TTTCTTTTTTTTCTTT
1 TCTTTTTTCTT-TTCTCTTTT--T--TTCTTTTTATTTTCTTTTTTTTCTTC
*
84823866 TCTTTTTT-TATCTTCT-TTTTTCTCTTTTATATCTTTCTTTTT
1 TCTTTTTTCT-T-TTCTCTTTTTTTCTTTT-TAT-TTTCTTTTT
84823908 CCTTTTTAAT
Statistics
Matches: 310, Mismatches: 33, Indels: 99
0.70 0.07 0.22
Matches are distributed among these distances:
42 17 0.05
43 8 0.03
44 11 0.04
45 5 0.02
46 10 0.03
47 12 0.04
48 37 0.12
49 56 0.18
50 58 0.19
51 19 0.06
52 14 0.05
53 17 0.05
54 1 0.00
55 7 0.02
56 1 0.00
58 9 0.03
59 18 0.06
60 4 0.01
61 6 0.02
ACGTcount: A:0.05, C:0.16, G:0.02, T:0.77
Consensus pattern (47 bp):
TCTTTTTTCTTTTCTCTTTTTTTCTTTTTATTTTCTTTTTTTTCTTC
Found at i:84823569 original size:56 final size:56
Alignment explanation
Indices: 84823433--84823646 Score: 68
Period size: 63 Copynumber: 3.6 Consensus size: 56
84823423 TTTATTTCTT
* * *
84823433 ATTTTTTTTCTCTCTTCTTTTGCTTCTTATTTTTCTTTTTTCT-TTTTTTC-TTT-TTTTC
1 ATTTTTTTT-TCTTTTC-TTT-CTTCTT-TCTTT-TTTCTTCTCTTTTTTCTTTTCTTTTC
* * *
84823491 CTTTTTATTTTC-TTTGTTT-TTCTTCTCTTTTTTCTTTTCTCTTTCATTTATTTT-TGTGTT-
1 ATTTTT-TTTTCTTTTCTTTCTTCTT-TCTTTTTTC--TTCTCTTT--TTTCTTTTCT-T-TTC
* * *
84823551 TTTTTTTTTTCTTTTTTCTTCTCTCTTT-TTTTTTATTCATCTTTTTTCTTCTTTTCTTTCTTC
1 ATTTTTTTTTCTTTTCT-TTCT-TCTTTCTTTTTTCTTC-TC--TTTT-TTCTTTTC-TT-TTC
*
84823614 -TTTCTTTTTTCTTTTCTTCTTTTCTTTCTTTTT
1 ATTT-TTTTTTCTTTTCTT-TCTTCTTTCTTTTT
84823647 ATTTTTTTTT
Statistics
Matches: 119, Mismatches: 14, Indels: 41
0.68 0.08 0.24
Matches are distributed among these distances:
53 3 0.03
54 9 0.08
55 4 0.03
56 6 0.05
57 2 0.02
58 10 0.08
59 15 0.13
60 13 0.11
61 16 0.13
62 17 0.14
63 24 0.20
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (56 bp):
ATTTTTTTTTCTTTTCTTTCTTCTTTCTTTTTTCTTCTCTTTTTTCTTTTCTTTTC
Found at i:84823720 original size:1 final size:1
Alignment explanation
Indices: 84823714--84823792 Score: 104
Period size: 1 Copynumber: 79.0 Consensus size: 1
84823704 TTATCTCTTC
* * * * *
84823714 TTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTTTTTTTCTTTTTTCTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*
84823779 CTTTTTTTTTTTTT
1 TTTTTTTTTTTTTT
84823793 CTTCTATTTG
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 66 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (1 bp):
T
Found at i:84823886 original size:15 final size:14
Alignment explanation
Indices: 84823349--84824065 Score: 160
Period size: 14 Copynumber: 49.4 Consensus size: 14
84823339 GCGTTCTTTA
*
84823349 TTTTTTATTTTCTT
1 TTTTTTCTTTTCTT
*
84823363 TTTTTATTTTTTCTT
1 TTTTT-TCTTTTCTT
*
84823378 TCTTTTTTTTTTACTT
1 T-TTTTTCTTTT-CTT
* *
84823394 CTTTCTTTCCTCTCTT
1 -TTT-TTTCTTTTCTT
*
84823410 TTTTAATT-ATTTC-T
1 TTTT--TTCTTTTCTT
* *
84823424 TTATTTC--TTATT
1 TTTTTTCTTTTCTT
*
84823436 TTTTTTC-TCTCTT
1 TTTTTTCTTTTCTT
* *
84823449 CTTTTGC--TTCTT
1 TTTTTTCTTTTCTT
* *
84823461 ATTTTTCTTTTTTCT
1 TTTTTTCTTTTCT-T
84823476 TTTTTTCTTTT-TT
1 TTTTTTCTTTTCTT
*
84823489 TCCTTTTTATTTTCTT
1 T--TTTTTCTTTTCTT
*
84823505 TGTTTTTC--TTCTC
1 T-TTTTTCTTTTCTT
84823518 TTTTTTCTTTTCTCT
1 TTTTTTCTTTTCT-T
*
84823533 TTCATTTAT-TTTTGTGT
1 TT--TTT-TCTTTTCT-T
*
84823550 TTTTTTTTTTTCTT
1 TTTTTTCTTTTCTT
*
84823564 TTTTCTTC-TCTCTT
1 TTTT-TTCTTTTCTT
84823578 TTTTTT-TATTCATCTT
1 TTTTTTCT-TT--TCTT
84823594 TTTTCTTCTTTTCTT
1 TTTT-TTCTTTTCTT
84823609 TCTTCTTTCTTTT-TT
1 T-TT-TTTCTTTTCTT
84823624 CTTTTCTTCTTTTCTT
1 -TTTT-TTCTTTTCTT
*
84823640 TCTTTTTATTTT-TT
1 T-TTTTTCTTTTCTT
* *
84823654 TTTCTTTATTTTATGGT
1 TTT-TTTCTTTTCT--T
* *
84823671 TTGAGTTTCTTAATCTT
1 TT--TTTTCTT-TTCTT
* * * *
84823688 CTCTTTATATTTC-C
1 TTTTTTCT-TTTCTT
* * *
84823702 CTTTATCTCTTCTT
1 TTTTTTCTTTTCTT
*
84823716 TTTTTTTTTTTCTT
1 TTTTTTCTTTTCTT
* *
84823730 TTTTTTTTTTTTTT
1 TTTTTTCTTTTCTT
*
84823744 TTTTTTTTTTTCTT
1 TTTTTTCTTTTCTT
84823758 TCTTTTT-TTTTCTT
1 T-TTTTTCTTTTCTT
*
84823772 TTTTCTTCTTTTTTT
1 TTTT-TTCTTTTCTT
* *
84823787 TTTTTTCTTCTATT
1 TTTTTTCTTTTCTT
** *
84823801 TGCTTTCTTTTATT
1 TTTTTTCTTTTCTT
*
84823815 CTCTTTTT-TCTTCTT
1 -T-TTTTTCTTTTCTT
* ** *
84823830 TATTTT-AGTCCTT
1 TTTTTTCTTTTCTT
* * *
84823843 CTCTTT-ATTTCTT
1 TTTTTTCTTTTCTT
84823856 TTTTTTCTTTTCTT
1 TTTTTTCTTTTCTT
84823870 TTTTTATC--TTCTT
1 TTTTT-TCTTTTCTT
* *
84823883 TTTTCTCTTTTATAT
1 TTTTTTCTTTTCT-T
* *
84823898 CTTTCTT-TTTCCTT
1 -TTTTTTCTTTTCTT
*
84823912 TTTAATTT-TTATTATT
1 TTT--TTTCTT-TTCTT
* *
84823928 TTTTTCCTTTTTCTC
1 TTTTTTC-TTTTCTT
* *
84823943 TTTCTTCTACTTCTT
1 TTTTTTCT-TTTCTT
84823958 TTTTTTCTTTTCTCT
1 TTTTTTCTTTTCT-T
*
84823973 CCTTTTGTTTTTTTCTTT
1 --TTTT-TTCTTTTC-TT
84823991 TGTTTGTTCTTTT-TT
1 T-TTT-TTCTTTTCTT
** *
84824006 ATGCTTTCTTATCTT
1 -TTTTTTCTTTTCTT
84824021 TTTTTT-TTTT-TT
1 TTTTTTCTTTTCTT
* *
84824033 TCTGATTAC-TTTCTT
1 T-T-TTTTCTTTTCTT
*
84824048 CTTTTTCTTTT-TT
1 TTTTTTCTTTTCTT
84824061 TTTTT
1 TTTTT
84824066 ATAAATTATA
Statistics
Matches: 524, Mismatches: 104, Indels: 151
0.67 0.13 0.19
Matches are distributed among these distances:
11 2 0.00
12 29 0.06
13 70 0.13
14 159 0.30
15 147 0.28
16 58 0.11
17 41 0.08
18 15 0.03
19 3 0.01
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.77
Consensus pattern (14 bp):
TTTTTTCTTTTCTT
Found at i:84823923 original size:91 final size:94
Alignment explanation
Indices: 84823756--84823924 Score: 201
Period size: 93 Copynumber: 1.8 Consensus size: 94
84823746 TTTTTTTTTC
*
84823756 TTTCTTTTTTTTTCTTTTTTCTTCTTTTTTTTTTTTTCTTCTATTTGCTTTCTTTTATTCTCTTT
1 TTTCTTTTTTTTTCTTTTTTCTTCTTTTTTTTTTTTTCTTCTATATGCTTTCTTTTATTCTCTTT
**
84823821 TTTCTTCTTTATTTTAGTCCTTCTCTTTA
66 TTAATTCTTTATTTTAGTCCTTCTCTTTA
*
84823850 TTTC-TTTTTTTTCTTTTCTT-TT-TTTATCTTCTTTTTTCTCTTTTATAT-CTTTC-TTT-TTC
1 TTTCTTTTTTTTTCTTTT-TTCTTCTTT-T-TT-TTTTTT-TCTTCTATATGCTTTCTTTTATTC
84823909 -CTTTTTAATT-TTTATT
61 TCTTTTTAATTCTTTATT
84823925 ATTTTTTTCC
Statistics
Matches: 66, Mismatches: 4, Indels: 13
0.80 0.05 0.16
Matches are distributed among these distances:
91 6 0.09
92 11 0.17
93 19 0.29
94 11 0.17
95 11 0.17
96 8 0.12
ACGTcount: A:0.07, C:0.16, G:0.01, T:0.76
Consensus pattern (94 bp):
TTTCTTTTTTTTTCTTTTTTCTTCTTTTTTTTTTTTTCTTCTATATGCTTTCTTTTATTCTCTTT
TTAATTCTTTATTTTAGTCCTTCTCTTTA
Found at i:84823966 original size:22 final size:23
Alignment explanation
Indices: 84823935--84823991 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
84823925 ATTTTTTTCC
84823935 TTTTTCTCTTTCTTCTACTTCT-TT
1 TTTTTCT-TTTC-TCTACTTCTGTT
* *
84823959 TTTTTCTTTTCTCTCCTTTTGTT
1 TTTTTCTTTTCTCTACTTCTGTT
84823982 TTTTTCTTTT
1 TTTTTCTTTT
84823992 GTTTGTTCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 7 0.23
23 16 0.53
24 7 0.23
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.75
Consensus pattern (23 bp):
TTTTTCTTTTCTCTACTTCTGTT
Found at i:84824065 original size:6 final size:6
Alignment explanation
Indices: 84823356--84824064 Score: 81
Period size: 6 Copynumber: 112.7 Consensus size: 6
84823346 TTATTTTTTA
*
84823356 TTTTCT TTTT-T TATTTTT TCTTTCT TTTT-T TTTTACT TCTTTCT TTCCTCTCTT
1 TTTTCT TTTTCT T-TTTCT T-TTTCT TTTTCT TTTT-CT T-TTTCT TT--T-TC-T
* * *
84823410 TTTTAAT TATTTCTT TATTTCT TATTT-T TTTTCT CTCTTCT TTTGCT
1 TTTT-CT T-TTTC-T T-TTTCT T-TTTCT TTTTCT -TTTTCT TTTTCT
* * * *
84823457 TCTTAT TTTTCTT TTTTCT TTTT-T TCTTT-T TTTCCT TTTT-A TTTTCT
1 TTTTCT TTTTC-T TTTTCT TTTTCT T-TTTCT TTTTCT TTTTCT TTTTCT
* *
84823504 TTGTT-T TTCTTCT CTTTTTT CTTTTCT CTTTCAT TTATT-T TTGTGT-T
1 TT-TTCT TT-TTCT -TTTTCT -TTTTCT TTTTC-T TT-TTCT TT-T-TCT
* * * *
84823551 TTTTTT TTTTCTT TTTTCT TCTCTCT TTTTTT TTATTCAT CTTTT-T TCTTC-
1 TTTTCT TTTTC-T TTTTCT T-TTTCT TTTTCT TT-TTC-T -TTTTCT TTTTCT
* * *
84823602 TTTTCT TTCTTCT TTCT-T TTTTC- TTTTCT TCTTT-T CTTTCT TTTT-A
1 TTTTCT TT-TTCT TTTTCT TTTTCT TTTTCT T-TTTCT TTTTCT TTTTCT
* ** * ** * * *
84823648 TTTT-T TTTTCT TTATTTT ATGGTTTGA GTTTCT TAATC- TTCTCT TTATAT
1 TTTTCT TTTTCT TT-TTCT -T--TTTCT TTTTCT TTTTCT TTTTCT TTTTCT
**
84823698 TTCCCT TTATCTCT TCTTT-T TTTT-T TTTTCT TTTT-T TTTT-T TTTT-T
1 TTTTCT TT-T-TCT T-TTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
* *
84823744 TTTT-T TTTT-T TCTTTC- TTTT-T TTTTCTT TTTTCT TCTTTTT TTTTTT
1 TTTTCT TTTTCT T-TTTCT TTTTCT TTTTC-T TTTTCT T-TTTCT TTTTCT
* * *
84823791 TTCTTCT ATTTGCT TTCTT-T TATTCTCTT TTTTCT TCTTTAT TTTAGTCC
1 TT-TTCT -TTTTCT TT-TTCT T-TT-TC-T TTTTCT T-TTTCT TTT--TCT
* *
84823841 TTCTCT TTATT-T CTTT-T TTTTC- TTTTCT TTTT-T TATCTTCTT TTTTCT
1 TTTTCT TT-TTCT TTTTCT TTTTCT TTTTCT TTTTCT T-T-TTC-T TTTTCT
* * * *
84823889 CTTTTAT ATCTTTCT TTTTCCT TTTTAAT TTTTAT TATTT-T TTTCCT
1 -TTTTCT -T-TTTCT TTTT-CT TTTT-CT TTTTCT T-TTTCT TTTTCT
* * * * *
84823936 TTTTCT CTTTCT TCTACT TCTTT-T TTTTCT TTTCTCT CCTTTTGT TTTTTT
1 TTTTCT TTTTCT TTTTCT T-TTTCT TTTTCT TTT-TCT --TTTTCT TTTTCT
* *
84823987 CTTTTGT TTGTTCT TTTT-T ATGCTTTC- TTATCT TTTT-T TTTT-T TTTTCT
1 -TTTTCT TT-TTCT TTTTCT -T--TTTCT TTTTCT TTTTCT TTTTCT TTTTCT
* *
84824036 GATTACT TTCTTCT TTTTCT TTTT-T TTTT
1 -TTTTCT TT-TTCT TTTTCT TTTTCT TTTT
84824065 TATAAATTAT
Statistics
Matches: 525, Mismatches: 88, Indels: 181
0.66 0.11 0.23
Matches are distributed among these distances:
5 123 0.23
6 186 0.35
7 154 0.29
8 44 0.08
9 14 0.03
10 4 0.01
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTTCT
Found at i:84824339 original size:1 final size:1
Alignment explanation
Indices: 84824324--84824907 Score: 673
Period size: 1 Copynumber: 584.0 Consensus size: 1
84824314 AATGGTTGCG
* * ** ** * * * *
84824324 TTTTTTCTTTATTTTTTTTTTTTTTTTTTCCTTTTTTTCCTTTTCTTTCTATTTTTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
*** * ** ** *
84824389 TTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTATTTAGTTTAATTTTATTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** * *
84824454 TTTTTATTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTATTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* **
84824519 TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
84824584 TTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTATATT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** **
84824649 TTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTTAATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** ** * * * **
84824714 TTATTTTTAATTTTTTAGTTTTTATTTTATTTTTTTTTTTTTTTTTTTTTATTTTTTTTAATTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
84824779 TTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTATATTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * **
84824844 TTATTTTTTTGTATTTTTTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
84824908 ATGTAGGATG
Statistics
Matches: 498, Mismatches: 85, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 498 1.00
ACGTcount: A:0.07, C:0.01, G:0.01, T:0.91
Consensus pattern (1 bp):
T
Found at i:84824700 original size:208 final size:203
Alignment explanation
Indices: 84824323--84824907 Score: 800
Period size: 208 Copynumber: 2.8 Consensus size: 203
84824313 GAATGGTTGC
* * * *
84824323 GTTTTTTCTTTATTTTTTTTTTTTTTTTTTCCTTTTTTTCCTTTTCTTTCTATTTTTCTTTTTTT
1 GTTTTTT-TTT-TTTTTTTTTTTTTTTTTT--TTTTTTT-TTTTTTTTTTTATTTTTTTTTTTTT
* * * **
84824388 TTTTTTTTTTTTTTTTTTTTTTTTTAAATTTTTTTTTTTTTTTTTTTATTTA-GTTTAATTTTAT
61 TTTTTTTTTTTTTTTTTTTTTTTTTATATTTTTTTTTTTTTTTTTTTTTTTATATTTTTTTTTAT
* *
84824452 TTTTTTTATTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTT-TTTTTTTTATTTTTTTTA
126 TTTTTTT-TTTTTTTTTTTTTTTT--TTTTTTTTTTTTTTTTTTTTATTTTTTTT-TATTTTTAA
*
84824516 TTTTTT-TTTTTTTTTT
187 TTTTTTATTTTTATTTT
84824532 GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTTTTTTTTATTTTTT
1 GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA-TTTTTTTTTT-TTTTTT
* *
84824597 TTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTATATTTTTTTTTTTATTT
64 TTTTTTTTTTTTTTTTTTTTTTATATTTTTTTTTTTTTTTTTTTTTT-TATATTTTTTTTTATTT
84824662 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTTTTTTTAATTTTTTTTTATTTTTAATTT
128 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT--TTTTTTTTTTT-ATTTTTTTTTATTTTTAATTT
84824727 TTTAGTTTTTATTTT
190 TTTA-TTTTTATTTT
* * **
84824742 -ATTTTTTTTTTTTTTTTTTTTTATTTTTTTTAATTTTTTTTTTTTATTTTTTTTTTTTTTTTTT
1 GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTT
* *
84824806 TTTTTTTTTATTTTTTTTTTTATATTTTTTTTTTTTTTTTATTTTTTTGTATTTTTTTTTAATTT
66 TTTTTTTTT-TTTTTTTTTTTATATTTTTTTTTTTTTTTT-TTTTTTTATATTTTTTTTTATTTT
84824871 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
129 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
84824908 ATGTAGGATG
Statistics
Matches: 343, Mismatches: 21, Indels: 27
0.88 0.05 0.07
Matches are distributed among these distances:
204 9 0.03
205 25 0.07
206 58 0.17
207 64 0.19
208 115 0.34
209 63 0.18
210 9 0.03
ACGTcount: A:0.07, C:0.01, G:0.01, T:0.90
Consensus pattern (203 bp):
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTATATTTTTTTTTTTTTTTTTTTTTTTATATTTTTTTTTATTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTATTTTTAATTTTTTATT
TTTATTTT
Found at i:84827370 original size:17 final size:17
Alignment explanation
Indices: 84827344--84827381 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
84827334 TTAACATTTT
84827344 AAAA-AATAAATTAAAA
1 AAAATAATAAATTAAAA
*
84827360 AAAATAATAAATTTAAA
1 AAAATAATAAATTAAAA
84827377 AAAAT
1 AAAAT
84827382 TTCTATATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAATAATAAATTAAAA
Found at i:84827377 original size:18 final size:16
Alignment explanation
Indices: 84827344--84827380 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 16
84827334 TTAACATTTT
84827344 AAAAAATAAATTAAAA
1 AAAAAATAAATTAAAA
84827360 AAAATAATAAATTTAAAA
1 AAAA-AATAAA-TTAAAA
84827378 AAA
1 AAA
84827381 TTTCTATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.21
17 6 0.32
18 9 0.47
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAAAATAAATTAAAA
Found at i:84827431 original size:1 final size:1
Alignment explanation
Indices: 84827425--84827582 Score: 136
Period size: 1 Copynumber: 158.0 Consensus size: 1
84827415 CAAATTGTTA
* ** * * * * *
84827425 TTTTTTTTTTTTATTTCATTTTTTGTTTATTTTTTTTTTTTATATATTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * * *
84827490 TTTTTTTTTTTATTTTTTTATTTTTTTTATTTTTGTTTTTTTGTTTATTATTTATATTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
84827555 TTTTTTTTTTTTTTATTTATTATTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
84827583 CTGTATTTTG
Statistics
Matches: 118, Mismatches: 39, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 118 1.00
ACGTcount: A:0.10, C:0.01, G:0.02, T:0.87
Consensus pattern (1 bp):
T
Found at i:84827461 original size:30 final size:28
Alignment explanation
Indices: 84827422--84827600 Score: 143
Period size: 29 Copynumber: 6.2 Consensus size: 28
84827412 GAACAAATTG
*
84827422 TTATTTTTTTTTTTTATTTCATTTTTTGT
1 TTATTTTTTTTTTTT-TTTTATTTTTTGT
* *
84827451 TTATTTTTTTTTTTTATATATTTTTT-T
1 TTATTTTTTTTTTTTTTTTATTTTTTGT
* * *
84827478 TTTTTTTTTTTTTTTTTTTTTTTATTTTT
1 TTATTTTTTTTTTTTTTTTATTT-TTTGT
* *
84827507 TTATTTTTTTTATTTTTGT-TTTTTTGT
1 TTATTTTTTTTTTTTTTTTATTTTTTGT
84827534 TTATTATTTATATTTTTTTTTT-TTTTTT-T
1 TTATT-TTT-T-TTTTTTTTTTATTTTTTGT
* *
84827563 TT-TTTTATTTATTATTTTTTCTGTATTTTGT
1 TTATTTT-TTT-TT-TTTTTT-TATTTTTTGT
84827594 TGTATTT
1 T-TATTT
84827601 GTGTGCTGTT
Statistics
Matches: 123, Mismatches: 14, Indels: 22
0.77 0.09 0.14
Matches are distributed among these distances:
26 1 0.01
27 34 0.28
28 26 0.21
29 37 0.30
30 19 0.15
31 2 0.02
32 1 0.01
33 3 0.02
ACGTcount: A:0.11, C:0.01, G:0.03, T:0.85
Consensus pattern (28 bp):
TTATTTTTTTTTTTTTTTTATTTTTTGT
Found at i:84827557 original size:77 final size:77
Alignment explanation
Indices: 84827422--84827582 Score: 233
Period size: 75 Copynumber: 2.1 Consensus size: 77
84827412 GAACAAATTG
84827422 TTATTTTTTTTTTTTATTTCATTTTTTGTTTATTTTTTTTTTTTATATATTTTTTTTTTTTTTTT
1 TTATTTTTTTTTTTTATTTCATTTTTTGTTTATTTTTTTTTTTTATATATTTTTTTTTTTTTTTT
84827487 TTTTTTTTTTTT
66 TTTTTTTTTTTT
*
84827499 TTATTTTTTTATTTTT-TTT-A-TTTTTGTTT-TTTTGTTTATTATT-TATATTTTTTTTTTTTT
1 TTATTTTTTT-TTTTTATTTCATTTTTTGTTTATTTT-TTT-TTTTTATATATTTTTTTTTTTTT
* *
84827559 TTTTTTTTTTATTTA
63 TTTTTTTTTTTTTTT
84827574 TTATTTTTT
1 TTATTTTTT
84827583 CTGTATTTTG
Statistics
Matches: 78, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
74 4 0.05
75 51 0.65
76 5 0.06
77 13 0.17
78 5 0.06
ACGTcount: A:0.11, C:0.01, G:0.02, T:0.87
Consensus pattern (77 bp):
TTATTTTTTTTTTTTATTTCATTTTTTGTTTATTTTTTTTTTTTATATATTTTTTTTTTTTTTTT
TTTTTTTTTTTT
Found at i:84840465 original size:28 final size:29
Alignment explanation
Indices: 84840403--84840514 Score: 97
Period size: 28 Copynumber: 4.0 Consensus size: 29
84840393 ACCTATATAT
* * *
84840403 ATATGGCCCACTAGGCCC-AATCTC-TTCC
1 ATATGGCCCATTAAGCCCAAATCACATT-C
* *
84840431 ATATGGCCCATTAAGCCC-ATTCACATTT
1 ATATGGCCCATTAAGCCCAAATCACATTC
* *
84840459 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCATTAAGCCCAAATCACATTC
* * *
84840488 ATATGG-CCACTAGGCCAAAATCACATT
1 ATATGGCCCATTAAGCCCAAATCACATT
84840515 TATAGTCATG
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
28 55 0.79
29 15 0.21
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAAGCCCAAATCACATTC
Found at i:84852523 original size:13 final size:13
Alignment explanation
Indices: 84852505--84852530 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84852495 TCCATGCATA
84852505 CTTATACAATAAC
1 CTTATACAATAAC
84852518 CTTATACAATAAC
1 CTTATACAATAAC
84852531 ATACAACATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
CTTATACAATAAC
Found at i:84856337 original size:43 final size:43
Alignment explanation
Indices: 84856199--84856362 Score: 126
Period size: 43 Copynumber: 3.8 Consensus size: 43
84856189 CATAGGATTT
* * *
84856199 TCGATATGTGATTTCGTGTAAGACCACGTCTGAGAC-GTTGGC-A
1 TCGATATTTGATTTCGTGTAAGACCACGTTTGGGACAG-T-GCAA
* * **
84856242 TCGAT-TTGAGATTTACTTGTAAGACCGTGTTTGGGACA-T-CGACA
1 TCGATATT-TGATTT-CGTGTAAGACCACGTTTGGGACAGTGC-A-A
*
84856286 TTG-TATTTGATTTCGTGTAAGACC-CTGTTTGGGACAGTGCAA
1 TCGATATTTGATTTCGTGTAAGACCAC-GTTTGGGACAGTGCAA
* *
84856328 TCGATATTTGATTACATGTAAGACCACGTTTGGGA
1 TCGATATTTGATTTCGTGTAAGACCACGTTTGGGA
84856363 TGTTGGCATT
Statistics
Matches: 95, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
41 1 0.01
42 24 0.25
43 46 0.48
44 24 0.25
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (43 bp):
TCGATATTTGATTTCGTGTAAGACCACGTTTGGGACAGTGCAA
Found at i:84860587 original size:25 final size:25
Alignment explanation
Indices: 84860554--84860618 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
84860544 TCTCAAAATA
*
84860554 TTACCAGGGTAAAATCGCCAATA-TT
1 TTACTAGGGTAAAATCGCCAA-AGTT
* *
84860579 TTACTAGGGTAAAATTGTCAAAGTT
1 TTACTAGGGTAAAATCGCCAAAGTT
*
84860604 TTACTAAGGTAAAAT
1 TTACTAGGGTAAAAT
84860619 TGGGAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 1 0.03
25 34 0.97
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.32
Consensus pattern (25 bp):
TTACTAGGGTAAAATCGCCAAAGTT
Found at i:84867747 original size:41 final size:42
Alignment explanation
Indices: 84867690--84867884 Score: 157
Period size: 41 Copynumber: 4.5 Consensus size: 42
84867680 TTTATCAAAT
**
84867690 CACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAAT-TCA-TC
1 CACCGGCATTTAGCCTGCTAGGTTCGAAACCC-AATATCATTC
* * * *
84867731 CACCGGCATTTCGCCTGCTAGGCTCGAAGCCCAATATCATTT
1 CACCGGCATTTAGCCTGCTAGGTTCGAAACCCAATATCATTC
**
84867773 CACCGGCATTATAGCCTGCTAGGTTCGAAGGCCAGA-AT-AGTATC
1 CACCGGCATT-TAGCCTGCTAGGTTCGAAACCCA-ATATCA-T-TC
* * *
84867817 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGATATCATTT
1 -CACCGGCATT-TAGCCTGCTAGGTTCGAAA--CCCAATATCATTC
*
84867862 CACCAGCATTATAGCCTGCTAGG
1 CACCGGCATT-TAGCCTGCTAGG
84867885 CTCAAAGGCC
Statistics
Matches: 127, Mismatches: 16, Indels: 19
0.78 0.10 0.12
Matches are distributed among these distances:
40 3 0.02
41 30 0.24
42 12 0.09
43 23 0.18
44 26 0.20
45 27 0.21
46 5 0.04
47 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (42 bp):
CACCGGCATTTAGCCTGCTAGGTTCGAAACCCAATATCATTC
Found at i:84867832 original size:45 final size:45
Alignment explanation
Indices: 84867689--84867897 Score: 240
Period size: 44 Copynumber: 4.8 Consensus size: 45
84867679 TTTTATCAAA
* *
84867689 TCACCGGCATT-TAGCCTGCTAGGTTTTAAA--CCCGAAT-TCATC
1 TCACCGGCATTATAGCCTGCTAGG-CTCAAAGGCCCGAATATCATC
* * *
84867731 -CACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCC-AATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATC
* * *
84867772 TCACCGGCATTATAGCCTGCTAGGTTCGAAGGCCAGAATAGT-ATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA-TCATC
*
84867817 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATC
*
84867861 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGA
84867898 TTAGTACCAT
Statistics
Matches: 144, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
40 6 0.04
41 28 0.19
42 10 0.07
43 17 0.12
44 43 0.30
45 39 0.27
46 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATCATC
Found at i:84867871 original size:89 final size:87
Alignment explanation
Indices: 84867731--84867903 Score: 256
Period size: 89 Copynumber: 2.0 Consensus size: 87
84867721 CGAATTCATC
* * *
84867731 CACCGGCATTTCGCCTGCTAGGCTCGAAGCCCAATATCATTTCACCGGCATTATAGCCTGCTAGG
1 CACCGGCATTTAGCCTGCTAGGCTCAAAGCCCAATATCATTTCACCAGCATTATAGCCTGCTAGG
* *
84867796 TTCGAAGGCCAGAATAGTATCT
66 CTCAAAGGCCAGAATAGTATCT
*
84867818 CACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGATATCATTTCACCAGCATTATAGCCTGCTA
1 CACCGGCATT-TAGCCTGCTAGGCTCAAA-GCCCAATATCATTTCACCAGCATTATAGCCTGCTA
* *
84867883 GGCTCAAAGGCCCGATTAGTA
64 GGCTCAAAGGCCAGAATAGTA
84867904 CCATACGATA
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
87 10 0.13
88 16 0.21
89 50 0.66
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (87 bp):
CACCGGCATTTAGCCTGCTAGGCTCAAAGCCCAATATCATTTCACCAGCATTATAGCCTGCTAGG
CTCAAAGGCCAGAATAGTATCT
Found at i:84872955 original size:13 final size:13
Alignment explanation
Indices: 84872931--84872970 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
84872921 AAAGCAATTG
*
84872931 CACAAGGGCGTGT
1 CACACGGGCGTGT
*
84872944 CACACGGTCGTGT
1 CACACGGGCGTGT
*
84872957 CACATGGGCGTGT
1 CACACGGGCGTGT
84872970 C
1 C
84872971 CCTGTTGGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:84892002 original size:15 final size:15
Alignment explanation
Indices: 84891981--84892022 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
84891971 TAGAGAATGA
84891981 AATTTGTTATTTGAT
1 AATTTGTTATTTGAT
* *
84891996 TATTTGTTATTGGAT
1 AATTTGTTATTTGAT
*
84892011 AATTTTTTATTT
1 AATTTGTTATTT
84892023 ACATATATAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (15 bp):
AATTTGTTATTTGAT
Found at i:84895789 original size:25 final size:26
Alignment explanation
Indices: 84895733--84895789 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
84895723 GCTCTTCGTA
*
84895733 AGCTTCTTGATTTAAAGTTCTATGTG
1 AGCTTCTTGATTTAAAGCTCTATGTG
* **
84895759 AACTTCTTGA-TTATGGCTCTATGTG
1 AGCTTCTTGATTTAAAGCTCTATGTG
84895784 AGCTTC
1 AGCTTC
84895790 CTGTTATATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.44
Consensus pattern (26 bp):
AGCTTCTTGATTTAAAGCTCTATGTG
Found at i:84916835 original size:15 final size:15
Alignment explanation
Indices: 84916815--84916883 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
84916805 GTATCTTGGG
84916815 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
84916830 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
84916845 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
84916860 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
84916875 TTTCTTTAT
1 TTTCTTTAT
84916884 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:84916884 original size:30 final size:30
Alignment explanation
Indices: 84916806--84916893 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
84916796 CATAATATCG
* * * *
84916806 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
84916836 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
84916866 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
84916894 TATTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:84919328 original size:46 final size:46
Alignment explanation
Indices: 84919278--84919450 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
84919268 TGGTTGAGCA
* *
84919278 TCCGAACTCGTTAAGTTTAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
84919324 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
84919369 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
84919417 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
84919451 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:84919434 original size:93 final size:93
Alignment explanation
Indices: 84919275--84919445 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
84919265 GGATGGTTGA
* *
84919275 GCATCCGAACTCGTTAAGTTTAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
84919340 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
84919368 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
84919433 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
84919446 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:84926452 original size:40 final size:40
Alignment explanation
Indices: 84926406--84926630 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
84926396 CTTGCACAAG
* * *
84926406 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
84926446 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
84926486 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
84926526 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
84926566 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
84926607 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
84926631 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:84926501 original size:80 final size:80
Alignment explanation
Indices: 84926370--84926630 Score: 312
Period size: 80 Copynumber: 3.3 Consensus size: 80
84926360 CTCAAGAAAT
* * * * * * *
84926370 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
84926433 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
84926448 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
84926512 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
84926528 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
84926593 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
84926609 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
84926631 CATTCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
78 12 0.08
79 16 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:84930260 original size:17 final size:17
Alignment explanation
Indices: 84930238--84930273 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
84930228 CGTCGGTAGT
84930238 CTGCACTAGAATTGGAG
1 CTGCACTAGAATTGGAG
84930255 CTGCACTAGAATTGGAG
1 CTGCACTAGAATTGGAG
84930272 CT
1 CT
84930274 TCAGTCAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (17 bp):
CTGCACTAGAATTGGAG
Found at i:84930364 original size:169 final size:169
Alignment explanation
Indices: 84930085--84930406 Score: 619
Period size: 169 Copynumber: 1.9 Consensus size: 169
84930075 CCTGATTCGG
84930085 GCTGCACTAGAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAATTTTCTGACATTTTT
1 GCTGCACTAGAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAATTTTCTGACATTTTT
84930150 TCCGTCCATTCGAACTTAACATCTTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAA
66 TCCGTCCATTCGAACTTAACATCTTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAA
84930215 ACCTTTTACAAACCGTCGGTAGTCTGCACTAGAATTGGA
131 ACCTTTTACAAACCGTCGGTAGTCTGCACTAGAATTGGA
84930254 GCTGCACTAGAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAACTTTTCTGACA-TTT
1 GCTGCACTAGAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAA-TTTTCTGACATTTT
*
84930318 TTCCGTCCATTTGAACTTAACATCTTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGA
65 TTCCGTCCATTCGAACTTAACATCTTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGA
84930383 AACCTTTTACAAACCGTCGGTAGT
130 AACCTTTTACAAACCGTCGGTAGT
84930407 AATCGGCAAG
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
169 141 0.93
170 10 0.07
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (169 bp):
GCTGCACTAGAATTGGAGCTTCAGTCAAATAAGTTTTCAGTTGATCAAAATTTTCTGACATTTTT
TCCGTCCATTCGAACTTAACATCTTTTTGAAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAA
ACCTTTTACAAACCGTCGGTAGTCTGCACTAGAATTGGA
Found at i:84934570 original size:40 final size:40
Alignment explanation
Indices: 84934525--84934628 Score: 145
Period size: 40 Copynumber: 2.6 Consensus size: 40
84934515 CTTGCACAAG
* * * * *
84934525 GCCTTCGGGCCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAA
* *
84934565 GCCTTCGAGACTTAGCCCGGATATAGTCGCTAGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAA
84934605 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
84934629 CATTTGAATA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 56 1.00
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAA
Found at i:84942543 original size:40 final size:40
Alignment explanation
Indices: 84942499--84942721 Score: 225
Period size: 40 Copynumber: 5.5 Consensus size: 40
84942489 CTTGCACAAG
* * *
84942499 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
84942539 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * ** *
84942579 GCCTTCGGGTTTTAGCCCAGATATAATTGCTAGGACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
84942619 GCCTTCGGGTCTTAGCCTC-GATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCC-CGGATATAGTC-ACTAGCACAAAT
* * * *
84942659 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
* * *
84942700 GCCTTTGGGACTTAGCTCGGAT
1 GCCTTCGGGTCTTAGCCCGGAT
84942722 GTCATTCGAA
Statistics
Matches: 148, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.82
41 26 0.18
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:84945852 original size:17 final size:17
Alignment explanation
Indices: 84945820--84945852 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
84945810 ATGAGTTTTG
84945820 TTTAGTTTTTGATGATT
1 TTTAGTTTTTGATGATT
84945837 TTTACGTTTTTG-TGAT
1 TTTA-GTTTTTGATGAT
84945853 CGTTGCTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.03, G:0.18, T:0.64
Consensus pattern (17 bp):
TTTAGTTTTTGATGATT
Found at i:84949466 original size:42 final size:43
Alignment explanation
Indices: 84949320--84949475 Score: 133
Period size: 42 Copynumber: 3.7 Consensus size: 43
84949310 TATGTTTTCG
* *
84949320 TGTAAGACCACGTCTAGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACA
** * * * ***
84949364 TGTAAGACCATATCTGGGACATCGGCATTG-TATTTGATTTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
* *
84949406 CGTAAGACC-CTGTTTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
84949449 TGT-AGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
84949476 TGTATGAGCG
Statistics
Matches: 84, Mismatches: 22, Indels: 14
0.70 0.18 0.12
Matches are distributed among these distances:
41 1 0.01
42 43 0.51
43 16 0.19
44 24 0.29
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:84977292 original size:5 final size:5
Alignment explanation
Indices: 84977282--84977370 Score: 51
Period size: 6 Copynumber: 17.0 Consensus size: 5
84977272 ATATGTCTTT
* * *
84977282 TAAAA TAAAA T--AA TAAAA TTGAAA TGGAAA TAAAAA TCAAAA GAAATA
1 TAAAA TAAAA TAAAA TAAAA -TAAAA T-AAAA T-AAAA T-AAAA TAAA-A
84977330 TAAAAA TAAAA TAAAA T-AAA -AAAA TAAAAA TAAGAA TAAAA
1 T-AAAA TAAAA TAAAA TAAAA TAAAA T-AAAA TAA-AA TAAAA
84977371 AAACAGGAGG
Statistics
Matches: 68, Mismatches: 6, Indels: 20
0.72 0.06 0.21
Matches are distributed among these distances:
3 3 0.04
4 6 0.09
5 26 0.38
6 30 0.44
7 3 0.04
ACGTcount: A:0.74, C:0.01, G:0.06, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:84977318 original size:6 final size:6
Alignment explanation
Indices: 84977309--84977371 Score: 65
Period size: 6 Copynumber: 10.5 Consensus size: 6
84977299 ATTGAAATGG
* * * *
84977309 AAATAA AAATCA AAAGAA ATATAA AAAT-A AAATAA AATAAAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AA-ATAA AAATAA
*
84977357 AAATAA GAATAA AAA
1 AAATAA AAATAA AAA
84977372 AACAGGAGGA
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
5 5 0.11
6 35 0.78
7 5 0.11
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:84977336 original size:24 final size:24
Alignment explanation
Indices: 84977309--84977373 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
84977299 ATTGAAATGG
* * *
84977309 AAATAAAAATCAAAAGAAATATAA
1 AAATAAAAATAAAAAAAAAAATAA
84977333 AAAT-AAAATAAAATAAAAAAATAA
1 AAATAAAAATAAAA-AAAAAAATAA
*
84977357 AAATAAGAATAAAAAAA
1 AAATAAAAATAAAAAAA
84977374 CAGGAGGATC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
23 8 0.23
24 19 0.54
25 8 0.23
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (24 bp):
AAATAAAAATAAAAAAAAAAATAA
Found at i:84977353 original size:13 final size:13
Alignment explanation
Indices: 84977325--84977373 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
84977315 AAATCAAAAG
*
84977325 AAATATAAAAATA
1 AAATAAAAAAATA
84977338 AAATAAAATAAA-A
1 AAATAAAA-AAATA
84977351 AAAT--AAAAATA
1 AAATAAAAAAATA
84977362 AGAATAAAAAAA
1 A-AATAAAAAAA
84977374 CAGGAGGATC
Statistics
Matches: 30, Mismatches: 1, Indels: 9
0.75 0.03 0.22
Matches are distributed among these distances:
10 3 0.10
11 4 0.13
12 3 0.10
13 12 0.40
14 8 0.27
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (13 bp):
AAATAAAAAAATA
Found at i:84977353 original size:19 final size:20
Alignment explanation
Indices: 84977326--84977373 Score: 73
Period size: 18 Copynumber: 2.5 Consensus size: 20
84977316 AATCAAAAGA
*
84977326 AATATAAAAAT-AAAATAA-
1 AATAAAAAAATAAAAATAAG
84977344 AATAAAAAAATAAAAATAAG
1 AATAAAAAAATAAAAATAAG
84977364 AATAAAAAAA
1 AATAAAAAAA
84977374 CAGGAGGATC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 10 0.37
19 7 0.26
20 10 0.37
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (20 bp):
AATAAAAAAATAAAAATAAG
Done.