Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 252 of 345
Found at i:85667226 original size:20 final size:21
Alignment explanation
Indices: 85667198--85667241 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
85667188 AATGCTTTTG
*
85667198 TTTCTATTTTGTACT-TTTTCT
1 TTTCTATTTT-TACTCTTTACT
85667219 TTTC-ATTTTTACTCTTTACT
1 TTTCTATTTTTACTCTTTACT
85667239 TTT
1 TTT
85667242 TTTGGATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.11, C:0.16, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTCTATTTTTACTCTTTACT
Found at i:85670357 original size:30 final size:30
Alignment explanation
Indices: 85670302--85670363 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
85670292 AATTGATCAA
* *
85670302 GTTTTATATACATGTATTATCCATTT-CAT
1 GTTTTATATACATGTAATATACATTTCCAT
85670331 GTTTCTATATACCATGTAATA-ACATTTCCAT
1 GTTT-TATATA-CATGTAATATACATTTCCAT
85670362 GT
1 GT
85670364 AATTCATGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 4 0.14
30 11 0.39
31 13 0.46
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47
Consensus pattern (30 bp):
GTTTTATATACATGTAATATACATTTCCAT
Found at i:85670583 original size:25 final size:25
Alignment explanation
Indices: 85670555--85670607 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
85670545 ATGTTCATTT
* *
85670555 GAGCTATAGATCGGTATGCTCTCAC
1 GAGCTAGAAATCGGTATGCTCTCAC
* *
85670580 GAGCTAGAAATTGGTATGCTCTTAC
1 GAGCTAGAAATCGGTATGCTCTCAC
85670605 GAG
1 GAG
85670608 TTGTAGAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (25 bp):
GAGCTAGAAATCGGTATGCTCTCAC
Found at i:85673473 original size:6 final size:6
Alignment explanation
Indices: 85673455--85673545 Score: 53
Period size: 6 Copynumber: 14.8 Consensus size: 6
85673445 AAGAAACATT
* * * *
85673455 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATCAAA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
85673504 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
85673546 GTAACAGAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 4 0.06
6 55 0.83
7 5 0.08
8 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:85673506 original size:25 final size:25
Alignment explanation
Indices: 85673472--85673539 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
85673462 CTAGAATCAG
* * *
85673472 AATCAGAATCAGAATTAGGTGACAA
1 AATCAAAATCAGAATCAGGTAACAA
* *
85673497 AATCAAAATCAGTATCAGGTAACAG
1 AATCAAAATCAGAATCAGGTAACAA
85673522 AATCAAAATCAGAATCAG
1 AATCAAAATCAGAATCAG
85673540 TATCAGGTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.50, C:0.15, G:0.16, T:0.19
Consensus pattern (25 bp):
AATCAAAATCAGAATCAGGTAACAA
Found at i:85673529 original size:31 final size:31
Alignment explanation
Indices: 85673494--85673560 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
85673484 AATTAGGTGA
85673494 CAAAATCAAAATCAGTATCAGGTAACAGAAT
1 CAAAATCAAAATCAGTATCAGGTAACAGAAT
*
85673525 CAAAATCAGAATCAGTATCAGGTAACAGAAT
1 CAAAATCAAAATCAGTATCAGGTAACAGAAT
*
85673556 AAAAA
1 CAAAA
85673561 ATTAGAATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.54, C:0.15, G:0.13, T:0.18
Consensus pattern (31 bp):
CAAAATCAAAATCAGTATCAGGTAACAGAAT
Found at i:85673964 original size:22 final size:22
Alignment explanation
Indices: 85673936--85674000 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
85673926 GCAAATACGT
*
85673936 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
85673958 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
* *
85673980 TTGACACAAAGGCATAATCAG
1 TTGGCACAAAGCCATAATCAG
85674001 AAGGCTTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:85674486 original size:27 final size:27
Alignment explanation
Indices: 85674428--85675027 Score: 650
Period size: 27 Copynumber: 23.0 Consensus size: 27
85674418 GGGGCAAAAT
* * * *
85674428 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
85674454 GATAATTCCACCCTACAGAGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85674481 GGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85674508 GGTAATTCTACCCTACAGGGGTATTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85674535 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85674562 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
85674589 GGTACTTCTACTCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * * *
85674616 AATAATTCTACCCTATAGGGATATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
85674643 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85674669 TGATAATTCTACCCTACAGAGGTATTTC
1 -GGTAATTCTACCCTACAGGGGTATTTC
*
85674697 GGTAA-T-T---CTA-A---GTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85674715 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85674742 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85674769 GATAATTCTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85674796 GGTAA-T-T---CTA-A---GTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
85674814 GGTAATTCTACCCTACA-AGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
85674840 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
85674867 GGTAATTCTACTGTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85674894 GATAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
85674921 AGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
85674948 GGTAATTCTACCTTATGGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
85674975 GGTAATTCTACCCTACAGGGGTATTGT-
1 GGTAATTCTACCCTACAGGGGTATT-TC
* *
85675002 GATAATTCTACCCTGCAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
85675028 AAGTAATTTT
Statistics
Matches: 484, Mismatches: 68, Indels: 44
0.81 0.11 0.07
Matches are distributed among these distances:
18 21 0.04
19 2 0.00
20 2 0.00
21 2 0.00
22 6 0.01
23 6 0.01
24 2 0.00
25 2 0.00
26 41 0.08
27 396 0.82
28 4 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:85674727 original size:45 final size:44
Alignment explanation
Indices: 85674663--85674849 Score: 232
Period size: 45 Copynumber: 4.0 Consensus size: 44
85674653 CCCTACAGGG
*
85674663 GTATTCTGATAATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
1 GTATTCCG-TAATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
*
85674708 GTATTCCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACA
1 GTATTCC-GTAATTCTACCCTACAGAGGTATTTCGGTAA-T-T---CTA-A
85674759 GGGGTATTCCGATAATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
1 ---GTATTCCG-TAATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
85674807 GTATTCCGGTAATTCTACCCTACA-AGGTATTTCGGTAATTCTA
1 GTATTCC-GTAATTCTACCCTACAGAGGTATTTCGGTAATTCTA
85674850 CCCTACAGGG
Statistics
Matches: 127, Mismatches: 3, Indels: 25
0.82 0.02 0.16
Matches are distributed among these distances:
44 19 0.15
45 57 0.45
46 3 0.02
47 1 0.01
48 1 0.01
49 3 0.02
50 3 0.02
51 1 0.01
52 1 0.01
53 2 0.02
54 36 0.28
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (44 bp):
GTATTCCGTAATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
Found at i:85674751 original size:99 final size:99
Alignment explanation
Indices: 85674609--85674999 Score: 498
Period size: 99 Copynumber: 3.9 Consensus size: 99
85674599 CTCTACAGGG
* * * * *
85674609 GTATTGCAATAATTCTACCCTATAGGGATATTTTGGTAATTCTACCCTACAGGGGTA-TTCTGAT
1 GTATTCCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC-GAT
85674673 AATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
65 AATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
*
85674708 GTATTCCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTCCGATA
1 GTATTCCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATA
85674773 ATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
66 ATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
* * *
85674807 GTATTCCGGTAATTCTACCCTACA-AGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTA
1 GTATTCCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATA
** * * *
85674871 ATTCTACTGTACAGGGGTATTGCGATAATTCTACCCTACA
66 ATTCTACCCTACAGAGGTATTTCGGTAA-T-T---CTA-A
* * **
85674911 GGGGTATTCCAGTAATTCTACCCTACAGGGGTATTCCGGTAATTCTACCTTATGGGGGTATTTCG
1 ---GTATTCCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCG
* *
85674976 GTAATTCTACCCTACAGGGGTATT
63 ATAATTCTACCCTACAGAGGTATT
85675000 GTGATAATTC
Statistics
Matches: 258, Mismatches: 23, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
98 60 0.23
99 114 0.44
100 3 0.01
103 3 0.01
104 1 0.00
107 23 0.09
108 54 0.21
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (99 bp):
GTATTCCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATA
ATTCTACCCTACAGAGGTATTTCGGTAATTCTAA
Found at i:85674765 original size:72 final size:72
Alignment explanation
Indices: 85674644--85674778 Score: 218
Period size: 72 Copynumber: 1.9 Consensus size: 72
85674634 GGATATTTTG
* *
85674644 GTAATTCTACCCTACAGGGGTATTCTGATAATTCTACCCTACAGAGGTATTTCGGTAATTCTAAG
1 GTAATTCTACCCTACAGGGGTATTCTGATAATTCTACCCTACAGAGGTATTCCGATAATTCTAAG
85674709 TATTCCA
66 TATTCCA
* *
85674716 GTAATTCTACCCTACAGGGGTATT-TCGGTAATTCTACCCTACAGGGGTATTCCGATAATTCTA
1 GTAATTCTACCCTACAGGGGTATTCT-GATAATTCTACCCTACAGAGGTATTCCGATAATTCTA
85674779 CCCTACAGAG
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
71 1 0.02
72 57 0.98
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (72 bp):
GTAATTCTACCCTACAGGGGTATTCTGATAATTCTACCCTACAGAGGTATTCCGATAATTCTAAG
TATTCCA
Found at i:85674816 original size:18 final size:18
Alignment explanation
Indices: 85674789--85674823 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
85674779 CCCTACAGAG
*
85674789 GTATTTCGGTAATTCTAA
1 GTATTCCGGTAATTCTAA
85674807 GTATTCCGGTAATTCTA
1 GTATTCCGGTAATTCTA
85674824 CCCTACAAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (18 bp):
GTATTCCGGTAATTCTAA
Found at i:85675050 original size:27 final size:27
Alignment explanation
Indices: 85675020--85675105 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 27
85675010 TACCCTGCAG
* **
85675020 GGGTATTTAAGTAATTTTATTGATCGA
1 GGGTATTTAAGTAATTTTGTAAATCGA
** * *
85675047 GGGTATTTGGGTAATTTTGTAAACCAA
1 GGGTATTTAAGTAATTTTGTAAATCGA
*
85675074 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTAAGTAATTTTGTAAATCGA
85675101 GGGTA
1 GGGTA
85675106 AAATGGTAAT
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.40
Consensus pattern (27 bp):
GGGTATTTAAGTAATTTTGTAAATCGA
Found at i:85675051 original size:81 final size:80
Alignment explanation
Indices: 85674807--85675062 Score: 279
Period size: 81 Copynumber: 3.2 Consensus size: 80
85674797 GTAATTCTAA
* * *
85674807 GTATTCCGGTAATTCTACCCTACA-AGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTA
1 GTATTTCGGTAATTCTACCCTACAGGGGTATTT-GATAATTCTACCCTACAGGGGTATTTCGGTA
*
85674871 ATTCTACTG-TAC-AGGG
65 ATTCTATTGAT-CGA-GG
* * ** *
85674887 GTATTGCGATAATTCTACCCTACAGGGGTATTCCAGTAATTCTACCCTACAGGGGTATTCCGGTA
1 GTATTTCGGTAATTCTACCCTACAGGGGTATTTGA-TAATTCTACCCTACAGGGGTATTTCGGTA
*
85674952 ATTCTACCTT-AT-GGGG
65 ATTCTA--TTGATCGAGG
* **
85674968 GTATTTCGGTAATTCTACCCTACAGGGGTATTGTGATAATTCTACCCTGCAGGGGTATTTAAGTA
1 GTATTTCGGTAATTCTACCCTACAGGGGTATT-TGATAATTCTACCCTACAGGGGTATTTCGGTA
*
85675033 ATTTTATTGATCGAGG
65 ATTCTATTGATCGAGG
*
85675049 GTATTTGGGTAATT
1 GTATTTCGGTAATT
85675063 TTGTAAACCA
Statistics
Matches: 147, Mismatches: 20, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
79 2 0.01
80 24 0.16
81 118 0.80
82 1 0.01
83 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (80 bp):
GTATTTCGGTAATTCTACCCTACAGGGGTATTTGATAATTCTACCCTACAGGGGTATTTCGGTAA
TTCTATTGATCGAGG
Found at i:85675114 original size:27 final size:27
Alignment explanation
Indices: 85675084--85675145 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
85675074 GGGTATTTCA
*
85675084 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
85675111 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
85675138 GTAATTCT
1 GTAATTCT
85675146 ATCTTATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.35
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:85675132 original size:54 final size:54
Alignment explanation
Indices: 85675020--85675123 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
85675010 TACCCTGCAG
** ** *
85675020 GGGTATTTAAGTAATTTTATTGATCGAGGGTATTTGGGTAATTTTGTAAACCAA
1 GGGTATTTAAGTAATTTTATAAATCGAGGGTAAATGGGTAATTCTGTAAACCAA
* *
85675074 GGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAAT-GGTAATTCTGTAAA
1 GGGTATTTAAGTAATTTTATAAATCGAGGGT-AAATGGGTAATTCTGTAAA
85675124 TTGAGGGTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
54 40 0.95
55 2 0.05
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (54 bp):
GGGTATTTAAGTAATTTTATAAATCGAGGGTAAATGGGTAATTCTGTAAACCAA
Found at i:85675217 original size:28 final size:26
Alignment explanation
Indices: 85675157--85675244 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 26
85675147 TCTTATTTTA
* *
85675157 GTAATTTTACAAATCAAGGATATTTG
1 GTAATTTTACAAATCGAGGGTATTTG
* *
85675183 GGAATTTTTATAAATCGAGGGTACTTTG
1 GTAA-TTTTACAAATCGAGGGTA-TTTG
* *
85675211 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAATCGAGGGTATTT-G
85675238 GTAATTT
1 GTAATTT
85675245 GGTAAACTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.12
27 38 0.75
28 7 0.14
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAAATCGAGGGTATTTG
Found at i:85680466 original size:30 final size:29
Alignment explanation
Indices: 85680432--85680497 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 29
85680422 ATGAATCGGA
85680432 AGCTTTGGCACTAAGTGTGC-ATTTTAAACT
1 AGCTTTGGCACTAAGTGTGCGA-TTT-AACT
85680462 AGCTTTGGCACTAAGTGTGCGATTTAACT
1 AGCTTTGGCACTAAGTGTGCGATTTAACT
85680491 AGCTTTG
1 AGCTTTG
85680498 TTTACTTGAG
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 11 0.31
30 23 0.66
31 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATTTAACT
Found at i:85682229 original size:8 final size:8
Alignment explanation
Indices: 85682212--85682242 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
85682202 TCCTAATATG
85682212 TCAATCAT
1 TCAATCAT
*
85682220 TCAATAAT
1 TCAATCAT
85682228 TCAATCAT
1 TCAATCAT
85682236 TCAATCA
1 TCAATCA
85682243 AACTAGCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (8 bp):
TCAATCAT
Found at i:85711660 original size:93 final size:93
Alignment explanation
Indices: 85711548--85711719 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85711538 CGCCCATAAG
* *
85711548 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85711613 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
85711641 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85711706 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
85711720 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85711716 original size:46 final size:46
Alignment explanation
Indices: 85711541--85711716 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
85711531 TGTAACCCGC
* * *
85711541 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85711587 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
85711637 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85711680 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85711717 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85718455 original size:93 final size:93
Alignment explanation
Indices: 85718343--85718514 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
85718333 CGCCCATAAG
* *
85718343 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85718408 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
85718436 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
85718501 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
85718515 TCAACATCCT
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:85718511 original size:46 final size:46
Alignment explanation
Indices: 85718336--85718511 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
85718326 TGTAACCCGC
* * *
85718336 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
85718382 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
85718432 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
85718475 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
85718512 TGCTCAACAT
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:85727154 original size:48 final size:47
Alignment explanation
Indices: 85726987--85727303 Score: 293
Period size: 48 Copynumber: 6.7 Consensus size: 47
85726977 CGGATAACCT
* ** *
85726987 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATTGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTTATATGGAGCC
* * * * *
85727034 AGTGTAAGACCATGTTTGGAACATGACATCGGCATTTATAAGAGAACT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTTATATG-GAGCC
*** *
85727082 AGTGTAAGACCATGTTTAAAACATGGCATCGGTATTTATATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTTATATG-GAGCC
* * *
85727130 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTTATATTGGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTTATA-TGGAGCC
* ** * * ** *
85727178 AATGTAAGACCATGCCTAGGACATGGCATCGGCCTCGACATATGG-GCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCAT--TTATATGGAGCC
** **
85727226 AGTGTAAGACCATGTTTGTAACATGGCATCGGCA--CCTAT--AGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTTATATGGAGCC
*
85727269 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCAT
85727304 CTTACCCTTT
Statistics
Matches: 222, Mismatches: 42, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
43 33 0.15
44 4 0.02
47 35 0.16
48 142 0.64
49 5 0.02
50 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTTATATGGAGCC
Found at i:85733315 original size:25 final size:25
Alignment explanation
Indices: 85733269--85733316 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
85733259 TTATAACATG
* * * *
85733269 AAAATGACCGTTTTGCCTCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
85733294 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
85733317 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:85733395 original size:19 final size:20
Alignment explanation
Indices: 85733360--85733417 Score: 91
Period size: 19 Copynumber: 3.0 Consensus size: 20
85733350 TAAACATGGT
*
85733360 ATGTATGATATGCACATGAC
1 ATGTATGATAGGCACATGAC
*
85733380 ATGTATGATA-GCACATGAT
1 ATGTATGATAGGCACATGAC
85733399 ATGTATGATAGGCACATGA
1 ATGTATGATAGGCACATGA
85733418 TGTATTCATA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (20 bp):
ATGTATGATAGGCACATGAC
Found at i:85733418 original size:20 final size:19
Alignment explanation
Indices: 85733353--85733418 Score: 96
Period size: 20 Copynumber: 3.4 Consensus size: 19
85733343 ATTTTGATAA
*
85733353 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATA-GC
*
85733373 ACATGACATGTATGATAGC
1 ACATGATATGTATGATAGC
85733392 ACATGATATGTATGATAGGC
1 ACATGATATGTATGATA-GC
85733412 ACATGAT
1 ACATGAT
85733419 GTATTCATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
19 18 0.43
20 24 0.57
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (19 bp):
ACATGATATGTATGATAGC
Found at i:85733559 original size:25 final size:24
Alignment explanation
Indices: 85733468--85733563 Score: 149
Period size: 24 Copynumber: 4.0 Consensus size: 24
85733458 GAGGAAGTGC
85733468 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
85733492 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
85733516 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
85733540 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
85733564 ATGATAAAGC
Statistics
Matches: 67, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
24 56 0.84
25 11 0.16
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:85735274 original size:3 final size:3
Alignment explanation
Indices: 85735266--85735308 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
85735256 AATTACAATG
* *
85735266 ATA ATA ATA ATG ATA ATA ATA AAA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
85735309 CATAATGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:85736199 original size:28 final size:29
Alignment explanation
Indices: 85736151--85736258 Score: 94
Period size: 29 Copynumber: 3.8 Consensus size: 29
85736141 TTCACATACC
* * * *
85736151 TGTATCTGCCCCATTAAGCCC-AACCATA
1 TGTATATGGCCCATTAGGCCCAAACCACA
* *
85736179 T-TCATATGGCCCATTAGGCCCAAATCACC
1 TGT-ATATGGCCCATTAGGCCCAAACCACA
* *
85736208 TGTATATGGCCCATTAGGCCTAAATCACA
1 TGTATATGGCCCATTAGGCCCAAACCACA
* * *
85736237 TTTATATAGCCCGTTAGGCCCA
1 TGTATATGGCCCATTAGGCCCA
85736259 GTCACATTCA
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
27 1 0.02
28 16 0.25
29 47 0.72
30 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAACCACA
Found at i:85736215 original size:29 final size:29
Alignment explanation
Indices: 85736182--85736258 Score: 109
Period size: 29 Copynumber: 2.7 Consensus size: 29
85736172 AACCATATTC
*
85736182 ATATGGCCCATTAGGCCCAAATCACCTGT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
85736211 ATATGGCCCATTAGGCCTAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATGT
* *
85736240 ATATAGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
85736259 GTCACATTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATGT
Found at i:85739816 original size:40 final size:40
Alignment explanation
Indices: 85739757--85739927 Score: 206
Period size: 40 Copynumber: 4.3 Consensus size: 40
85739747 CATTTGAATG
* * *
85739757 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
85739797 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
85739837 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * ** *
85739877 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
85739916 ATATCC-GGCTAA
1 ATATCCGGGCTAA
85739928 ATTCCGAAGA
Statistics
Matches: 116, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.02
39 36 0.31
40 75 0.65
41 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:85739895 original size:39 final size:40
Alignment explanation
Indices: 85739757--85739907 Score: 216
Period size: 40 Copynumber: 3.8 Consensus size: 40
85739747 CATTTGAATG
* * *
85739757 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
85739797 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
85739837 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
85739877 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
85739908 TTGTGGTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 26 0.25
40 73 0.72
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:85739919 original size:79 final size:80
Alignment explanation
Indices: 85739757--85739927 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 80
85739747 CATTTGAATG
* * * *
85739757 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
85739822 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
85739837 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATA-CCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGACTATATCCGGGCTAAGACCCGAAGGC
** *
85739900 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
85739916 ATATCC-GGCTAA
1 ATATCCGGGCTAA
85739928 ATTCCGAAGA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 6 0.08
79 36 0.46
80 35 0.44
81 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGACTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCGAGTGGAT
Found at i:85747065 original size:40 final size:40
Alignment explanation
Indices: 85747010--85747220 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
85747000 ATTTGAATGA
*
85747010 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
85747050 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
85747090 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
85747130 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
85747170 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
85747210 TATCC-GGCTAA
1 TATCCGGGCTAA
85747221 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:85750073 original size:18 final size:18
Alignment explanation
Indices: 85750050--85750084 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
85750040 CTCTCGTCCT
* *
85750050 CTAAGGGGAAGCAGAAAG
1 CTAAGGGAAAGAAGAAAG
85750068 CTAAGGGAAAGAAGAAA
1 CTAAGGGAAAGAAGAAA
85750085 CCGACTAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.09, G:0.34, T:0.06
Consensus pattern (18 bp):
CTAAGGGAAAGAAGAAAG
Found at i:85757241 original size:40 final size:40
Alignment explanation
Indices: 85757186--85757403 Score: 237
Period size: 40 Copynumber: 5.5 Consensus size: 40
85757176 GCATAAATTG
* *
85757186 TATATATGGAACTTAGTGTGCAATTCGACATAGTTTCGGC
1 TATATATGGCACTTAGTGTGCAATTCGACATAGCTTCGGC
* * *
85757226 TATATATGGAACTTAGTGTGCGATTCGACATAGATTCGGC
1 TATATATGGCACTTAGTGTGCAATTCGACATAGCTTCGGC
*
85757266 TATATGTGGCACTTAGTGTG---TTCGACATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCAATTCGACATAGCTTCGGC
* * * *
85757303 TATATATGGCACTTAGTGTGTGAGA-TCCAGATAGCTTCAGC
1 TATATATGGCACTTAGTGTG-CA-ATTCGACATAGCTTCGGC
* * * * *
85757344 TATATATGGTACTTAGTGTGCTATTTGAGATAGCTTCAGC
1 TATATATGGCACTTAGTGTGCAATTCGACATAGCTTCGGC
* *
85757384 TATGTACGGCACTTAGTGTG
1 TATATATGGCACTTAGTGTG
85757404 AGAGATATCG
Statistics
Matches: 155, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
37 35 0.23
39 1 0.01
40 87 0.56
41 32 0.21
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (40 bp):
TATATATGGCACTTAGTGTGCAATTCGACATAGCTTCGGC
Found at i:85759921 original size:14 final size:15
Alignment explanation
Indices: 85759902--85759930 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
85759892 AAGTGTAGTT
85759902 ATTTTGATTT-TGGG
1 ATTTTGATTTATGGG
85759916 ATTTTGATTTATGGG
1 ATTTTGATTTATGGG
85759931 TTTCGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.55
Consensus pattern (15 bp):
ATTTTGATTTATGGG
Found at i:85761743 original size:17 final size:17
Alignment explanation
Indices: 85761721--85761753 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
85761711 TATACTAAAC
*
85761721 ACTGTAGTAAAACTGAG
1 ACTGTAGCAAAACTGAG
85761738 ACTGTAGCAAAACTGA
1 ACTGTAGCAAAACTGA
85761754 TAGAGACTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.21
Consensus pattern (17 bp):
ACTGTAGCAAAACTGAG
Found at i:85763297 original size:14 final size:14
Alignment explanation
Indices: 85763280--85763307 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
85763270 AATGTTCCTT
85763280 TAAAGGTCCAAGGG
1 TAAAGGTCCAAGGG
85763294 TAAAGGTCCAAGGG
1 TAAAGGTCCAAGGG
85763308 ACGATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.36, T:0.14
Consensus pattern (14 bp):
TAAAGGTCCAAGGG
Found at i:85764995 original size:40 final size:40
Alignment explanation
Indices: 85764928--85765038 Score: 134
Period size: 40 Copynumber: 2.8 Consensus size: 40
85764918 TTAATAGTCG
* *
85764928 AAGCTATCTCAACCTCGCACACTAAGTGCCATATATATCCA
1 AAGCTATCTCGA-CTCGCACACTAAGTGCCATATATAGCCA
* * *
85764969 AAGCTATTTCGACTCGCACACTAAGTGCTC-TATATGGCCG
1 AAGCTATCTCGACTCGCACACTAAGTGC-CATATATAGCCA
**
85765009 AAGCTATCTCGAAACGCACACTAAGTGCCA
1 AAGCTATCTCGACTCGCACACTAAGTGCCA
85765039 AACATAGTCA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
39 1 0.02
40 48 0.80
41 11 0.18
ACGTcount: A:0.32, C:0.30, G:0.15, T:0.23
Consensus pattern (40 bp):
AAGCTATCTCGACTCGCACACTAAGTGCCATATATAGCCA
Found at i:85778735 original size:17 final size:17
Alignment explanation
Indices: 85778715--85778748 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
85778705 TTATATTAAT
*
85778715 TAAATAAAATAAGTAAA
1 TAAATAAAATAAATAAA
85778732 TAAATAAAATAAATAAA
1 TAAATAAAATAAATAAA
85778749 GACAAATGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (17 bp):
TAAATAAAATAAATAAA
Found at i:85778892 original size:16 final size:16
Alignment explanation
Indices: 85778844--85778897 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
85778834 ATTTACTATT
85778844 TATAA-AAGATATTTA
1 TATAATAAGATATTTA
*
85778859 T-TAATTAAG-TAATTA
1 TATAA-TAAGATATTTA
*
85778874 TATTATAAGATATTTA
1 TATAATAAGATATTTA
85778890 TATAATAA
1 TATAATAA
85778898 ATAAATTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 3 0.10
15 11 0.35
16 17 0.55
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
TATAATAAGATATTTA
Found at i:85779693 original size:15 final size:16
Alignment explanation
Indices: 85779673--85779703 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
85779663 TAATATAAAG
85779673 TGAATTGA-AATATAT
1 TGAATTGAGAATATAT
85779688 TGAATTGAGAATATAT
1 TGAATTGAGAATATAT
85779704 CTGATTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (16 bp):
TGAATTGAGAATATAT
Found at i:85780088 original size:18 final size:18
Alignment explanation
Indices: 85780065--85780160 Score: 102
Period size: 18 Copynumber: 5.3 Consensus size: 18
85780055 TAAATAAAGG
*
85780065 TACTGAATAATTGATTAT
1 TACTGAATAAATGATTAT
* * *
85780083 TACTGAATAATTGACTGT
1 TACTGAATAAATGATTAT
* *
85780101 TACTGAATAAATGACTGT
1 TACTGAATAAATGATTAT
*
85780119 TATTGAATAAATGATTAT
1 TACTGAATAAATGATTAT
* * *
85780137 TATTGAATAACTGATTAA
1 TACTGAATAAATGATTAT
85780155 TACTGA
1 TACTGA
85780161 TGACTGGCTG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.40, C:0.07, G:0.14, T:0.40
Consensus pattern (18 bp):
TACTGAATAAATGATTAT
Found at i:85783767 original size:40 final size:40
Alignment explanation
Indices: 85783572--85783857 Score: 422
Period size: 39 Copynumber: 7.3 Consensus size: 40
85783562 GGACTAAGAT
* * * **
85783572 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGT-
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
85783611 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGG-TAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
85783650 CC--AGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGT-
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
85783687 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTT-AAGTC
85783728 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
85783768 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
85783808 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
85783847 CCGAAGGCATT
1 CCGAAGGCATT
85783858 TGAACGAGGA
Statistics
Matches: 230, Mismatches: 11, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
37 31 0.13
38 10 0.04
39 94 0.41
40 60 0.26
41 35 0.15
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:85783877 original size:79 final size:80
Alignment explanation
Indices: 85783572--85783891 Score: 278
Period size: 76 Copynumber: 4.1 Consensus size: 80
85783562 GGACTAAGAT
* * * * * ** ** *
85783572 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
85783636 AATCCGGG-TAAGTC
66 AATCCGGGTTAAGTC
** * * ** ** *
85783650 CC--AGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
85783712 AATCCGGGTTAAAGTC
66 AATCCGGGTT-AAGTC
** * * ** ** *
85783728 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
85783793 AATCCGGGTTAAGTC
66 AATCCGGGTTAAGTC
* * *
85783808 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
85783872 TATCC-GGTTAAAT-
66 AATCCGGGTTAAGTC
85783885 CCGAAGG
1 CCGAAGG
85783892 TACGTGATTT
Statistics
Matches: 218, Mismatches: 19, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
76 63 0.29
77 8 0.04
78 16 0.07
79 45 0.21
80 51 0.23
81 35 0.16
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:85790061 original size:26 final size:25
Alignment explanation
Indices: 85789930--85790187 Score: 96
Period size: 25 Copynumber: 10.3 Consensus size: 25
85789920 CAACTTAAGG
* * *
85789930 TAAATAATATAAAAAACAGTTTCAAA
1 TAAATAATATATAAAATAATTT-AAA
* *
85789956 TAATTAATATATAAAA-AACTTAAAA
1 TAAATAATATATAAAATAA-TTTAAA
*
85789981 TAAATAATA-ATAAAATAGCA-TGAAA
1 TAAATAATATATAAAATA--ATTTAAA
*
85790006 TAAACAA-ATATAAGAAT--TTTAAGA
1 TAAATAATATATAA-AATAATTTAA-A
*
85790030 TGAATAATATATAAAATAATTTAAA
1 TAAATAATATATAAAATAATTTAAA
* * *
85790055 TTAAATATTACACGTGAAAAT--TTAAAA
1 -TAAATAATATA--T-AAAATAATTTAAA
* * *
85790082 TAGATAATATGA-AAAATAGTTAAAA
1 TAAATAATAT-ATAAAATAATTTAAA
*
85790107 TAAATAATTTATAAAA-AATATCTAAGA
1 TAAATAATATATAAAATAAT-T-TAA-A
* * *
85790134 TAAATGAT-T-TATAA-AAGTT-AA
1 TAAATAATATATAAAATAATTTAAA
*
85790155 TAAACAATATATGAAAAT-ATTTAAAA
1 TAAATAATATAT-AAAATAATTT-AAA
85790181 TAAATAA
1 TAAATAA
85790188 AATAAGTAAG
Statistics
Matches: 175, Mismatches: 29, Indels: 56
0.67 0.11 0.22
Matches are distributed among these distances:
21 7 0.04
22 2 0.01
23 10 0.06
24 26 0.15
25 59 0.34
26 50 0.29
27 15 0.09
28 1 0.01
29 5 0.03
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (25 bp):
TAAATAATATATAAAATAATTTAAA
Found at i:85790124 original size:27 final size:26
Alignment explanation
Indices: 85790071--85790149 Score: 83
Period size: 27 Copynumber: 3.1 Consensus size: 26
85790061 ATTACACGTG
* *
85790071 AAAAT-TTAAAATAGATAA--TATGA
1 AAAATATTAAAATAAATAATTTATAA
85790094 AAAATAGTTAAAATAAATAATTTATAA
1 AAAATA-TTAAAATAAATAATTTATAA
* *
85790121 AAAATATCTAAGATAAATGATTTATAA
1 AAAATAT-TAAAATAAATAATTTATAA
85790148 AA
1 AA
85790150 GTTAATAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
23 5 0.11
25 12 0.26
26 1 0.02
27 29 0.62
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (26 bp):
AAAATATTAAAATAAATAATTTATAA
Found at i:85791096 original size:23 final size:22
Alignment explanation
Indices: 85791070--85791117 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
85791060 ATAGATTTGT
*
85791070 AGAAAATGAAACAAAAAGAAACA
1 AGAAAATGAAA-AAAAAGAAAAA
*
85791093 AGAAAATGAAAAGAAAGAAAAA
1 AGAAAATGAAAAAAAAGAAAAA
85791115 AGA
1 AGA
85791118 TTAAAGCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.75, C:0.04, G:0.17, T:0.04
Consensus pattern (22 bp):
AGAAAATGAAAAAAAAGAAAAA
Found at i:85794051 original size:16 final size:16
Alignment explanation
Indices: 85794016--85794096 Score: 71
Period size: 16 Copynumber: 5.0 Consensus size: 16
85794006 TCAAAATAAC
85794016 ATATTTTAATAA-ATT
1 ATATTTTAATAATATT
85794031 ATATTTTATATAATATT
1 ATATTTTA-ATAATATT
*
85794048 -TATTTCAAATATATATT
1 ATATTT-TAATA-ATATT
*
85794065 -TAAATTT-ATAAATATT
1 AT-ATTTTAAT-AATATT
85794081 ATATTTTAATAATATT
1 ATATTTTAATAATATT
85794097 CAAAATTTAG
Statistics
Matches: 54, Mismatches: 4, Indels: 15
0.74 0.05 0.21
Matches are distributed among these distances:
15 8 0.15
16 29 0.54
17 14 0.26
18 3 0.06
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (16 bp):
ATATTTTAATAATATT
Found at i:85796874 original size:47 final size:47
Alignment explanation
Indices: 85796803--85797027 Score: 196
Period size: 47 Copynumber: 4.8 Consensus size: 47
85796793 AGGGTATAAT
85796803 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATC-CATCAA
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCAC-TCAA
* * *
85796850 ATCGATGCCATGTCCCAGACATGGTCTTACACTAGCTT-TCACATTTTCAT
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCAC----TCAA
* * * *
85796900 GCCGATGCCATGTCCTAGACATGGTCTTACACTGAC--A-CATCTCGTA
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCA-CTC-AA
* * * *
85796946 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGC-TCTCGTCTCAA
1 ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATC-ACTCAA
* *
85796991 TGCTGATGCCATGTCCCAGACATGGTCTTACACTGGC
1 -ACCGATGCCATGTCCCAGACATGGTCTTACACTGGC
85797028 ACACAAATAA
Statistics
Matches: 146, Mismatches: 19, Indels: 25
0.77 0.10 0.13
Matches are distributed among these distances:
44 11 0.08
45 16 0.11
46 19 0.13
47 51 0.35
48 14 0.10
49 1 0.01
50 34 0.23
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (47 bp):
ACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTATCACTCAA
Found at i:85801326 original size:6 final size:6
Alignment explanation
Indices: 85801315--85801343 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
85801305 ACAATAAAAG
85801315 AAATTA AAATTA AAATTA AAATTA AAATT
1 AAATTA AAATTA AAATTA AAATTA AAATT
85801344 TAAGTAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (6 bp):
AAATTA
Found at i:85803049 original size:17 final size:18
Alignment explanation
Indices: 85803012--85803057 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
85803002 TTATCATCTA
* *
85803012 TAATTATTTTATTATTCT
1 TAATTATTTTATAATTAT
85803030 TAATT-TTTTATAATTAT
1 TAATTATTTTATAATTAT
*
85803047 TAAATATTTTA
1 TAATTATTTTA
85803058 AGTTATTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TAATTATTTTATAATTAT
Found at i:85820610 original size:24 final size:24
Alignment explanation
Indices: 85820583--85820632 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
85820573 AATAAAGTAT
85820583 GAGGCATTACCGGACACATACTCA
1 GAGGCATTACCGGACACATACTCA
* *
85820607 GAGGCGTTACTGGACACATACTCA
1 GAGGCATTACCGGACACATACTCA
85820631 GA
1 GA
85820633 CATTTCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.24, T:0.18
Consensus pattern (24 bp):
GAGGCATTACCGGACACATACTCA
Found at i:85820939 original size:29 final size:29
Alignment explanation
Indices: 85820889--85820944 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
85820879 ACAGGGGTTT
*
85820889 TCACACGGCCAAGCACACGCCCGTGTCCC
1 TCACACGGCCAAGCACACGCCCCTGTCCC
* *
85820918 TCACGCGGCCTAG-ACACGGCCCCTGTC
1 TCACACGGCCAAGCACAC-GCCCCTGTC
85820945 ATTACTCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.18, C:0.46, G:0.23, T:0.12
Consensus pattern (29 bp):
TCACACGGCCAAGCACACGCCCCTGTCCC
Found at i:85823949 original size:16 final size:17
Alignment explanation
Indices: 85823918--85823951 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
85823908 GGTAGGGGGT
85823918 ATTTATTCTTAATTGTCA
1 ATTTATTC-TAATTGTCA
85823936 ATTTATTC-AATTGTCA
1 ATTTATTCTAATTGTCA
85823952 GTAGTCAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (17 bp):
ATTTATTCTAATTGTCA
Found at i:85830911 original size:27 final size:27
Alignment explanation
Indices: 85830881--85831197 Score: 458
Period size: 27 Copynumber: 11.8 Consensus size: 27
85830871 CCTTAATCGA
*
85830881 TAAAATGATTATTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
*
85830908 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
85830935 TAAAATGACTATTTTGCCCTTAT-AGGG
1 TAAAATGACTATTTTGCCCTTATGA-GG
* * *
85830962 TAAAATGTCTGTTTTGCCCTTATGAAG
1 TAAAATGACTATTTTGCCCTTATGAGG
85830989 TAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
85831016 TAAAATGATTGTTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* * *
85831043 TAAAATGACTCTTTTTCCCTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
85831070 TAAAATGACTCTTTTTCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
85831097 TAAAATGACTA-TTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
* *
85831123 TAAAATGATTGTTTTGCCCTTATGAGG
1 TAAAATGACTATTTTGCCCTTATGAGG
*
85831150 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTGCCCTTATGAGG
**
85831177 TAAAACAACTATTTTGCCCTT
1 TAAAATGACTATTTTGCCCTT
85831198 TTATGGTAAG
Statistics
Matches: 262, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
26 24 0.09
27 237 0.90
28 1 0.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.39
Consensus pattern (27 bp):
TAAAATGACTATTTTGCCCTTATGAGG
Found at i:85831204 original size:27 final size:27
Alignment explanation
Indices: 85831134--85831206 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
85831124 AAAATGATTG
* **
85831134 TTTTGCCCTTATGA-GGTAAAATGACTA
1 TTTTGCCCTT-TTATGGTAAAACAACTA
* *
85831161 TTTTGCCCTTATGTGGTAAAACAACTA
1 TTTTGCCCTTTTATGGTAAAACAACTA
85831188 TTTTGCCCTTTTATGGTAA
1 TTTTGCCCTTTTATGGTAA
85831207 GATGACTGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.41
Consensus pattern (27 bp):
TTTTGCCCTTTTATGGTAAAACAACTA
Found at i:85831549 original size:17 final size:18
Alignment explanation
Indices: 85831524--85831570 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 18
85831514 TTGCATATTG
*
85831524 TTTATTGTTACTGCACT-
1 TTTACTGTTACTGCACTA
*
85831541 TTTACTGTTACCGCACTA
1 TTTACTGTTACTGCACTA
85831559 TTTACTGTTACT
1 TTTACTGTTACT
85831571 ACAATGGGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 15 0.58
18 11 0.42
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.49
Consensus pattern (18 bp):
TTTACTGTTACTGCACTA
Found at i:85833821 original size:27 final size:27
Alignment explanation
Indices: 85833790--85833917 Score: 150
Period size: 27 Copynumber: 4.7 Consensus size: 27
85833780 TTAGTTTACC
*
85833790 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** *
85833817 AAATTACTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * **
85833844 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
85833871 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
85833898 AAATTACCAAAATGCCCCTG
1 AAATTACCAAAATACCCCTG
85833918 TAGGGTAGAA
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
26 4 0.05
27 77 0.92
28 3 0.04
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:85833929 original size:27 final size:27
Alignment explanation
Indices: 85833872--85834068 Score: 243
Period size: 27 Copynumber: 7.3 Consensus size: 27
85833862 TGGTTTACAA
* ** *
85833872 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
85833899 AATTACCAAAATGCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
85833926 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
85833953 AGTTACTGAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
85833980 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
85834007 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
85834034 AAATACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
85834061 AATTACCG
1 AATTACCG
85834069 TGATAACCTT
Statistics
Matches: 150, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
26 2 0.01
27 148 0.99
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:85834079 original size:54 final size:54
Alignment explanation
Indices: 85833899--85834090 Score: 233
Period size: 54 Copynumber: 3.6 Consensus size: 54
85833889 TGGTTTGTAA
* * * * *
85833899 AATTACCAAAATGCCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
* * * * *
85833953 AGTTACTGAAATACCCCTGTAGAGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
* *
85834007 AATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
** * *
85834061 AATTACCGTGATAACCTTGTGGGGTA-AAAT
1 AATTACCGAAATACCCTTGTAGGGTAGAAAT
85834091 TACCATTTTG
Statistics
Matches: 121, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 4 0.03
54 117 0.97
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
Found at i:85834085 original size:27 final size:27
Alignment explanation
Indices: 85833916--85834094 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
85833906 AAAATGCCCC
* * *
85833916 TGTAGGGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATAACCT
* * * * *
85833943 TATAGGGTAGAGTTACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATAACCT
* * * *
85833970 TGTAGAGTAGAATTACTGAAATACCCC
1 TGTAGGGTAGAATTACCGAAATAACCT
*
85833997 TGTAGGGTAGAATTACCGAAATACCCT
1 TGTAGGGTAGAATTACCGAAATAACCT
*
85834024 TGTAGGGTAGAAATACCGAAAT-ACCT
1 TGTAGGGTAGAATTACCGAAATAACCT
**
85834050 CTGTAGGGTAGAATTACCGTGATAACCT
1 -TGTAGGGTAGAATTACCGAAATAACCT
* *
85834078 TGTGGGGTAAAATTACC
1 TGTAGGGTAGAATTACC
85834095 ATTTTGCCCC
Statistics
Matches: 135, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
26 3 0.02
27 128 0.95
28 4 0.03
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (27 bp):
TGTAGGGTAGAATTACCGAAATAACCT
Found at i:85834086 original size:81 final size:81
Alignment explanation
Indices: 85833899--85834094 Score: 230
Period size: 81 Copynumber: 2.4 Consensus size: 81
85833889 TGGTTTGTAA
* ** * ** *
85833899 AATTACCAAAATGCCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAGTTACTGAAA
1 AATTACCGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCGAAA
85833964 TACCCCTGTAGAGTAG
66 TACCCCTGTAGAGTAG
* * * *
85833980 AATTACTGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCGAAA
* *
85834045 TACCTCTGTAGGGTAG
66 TACCCCTGTAGAGTAG
** * * *
85834061 AATTACCGTGATAACCTTGTGGGGTAAAATTACC
1 AATTACCGAAATAACCCTGTAGGGTAGAATTACC
85834095 ATTTTGCCCC
Statistics
Matches: 97, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 97 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATAACCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAAATACCGAAA
TACCCCTGTAGAGTAG
Found at i:85834222 original size:11 final size:11
Alignment explanation
Indices: 85834206--85834270 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
85834196 ATATTGTTAT
85834206 ACATGATATGC
1 ACATGATATGC
85834217 ACATGATATG-
1 ACATGATATGC
**
85834227 TTATGATATGC
1 ACATGATATGC
85834238 ACATGATATGC
1 ACATGATATGC
* *
85834249 -TATGATATAC
1 ACATGATATGC
* *
85834259 TCATTATATGC
1 ACATGATATGC
85834270 A
1 A
85834271 TGGGTTGGGT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.38
11 26 0.62
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (11 bp):
ACATGATATGC
Found at i:85834269 original size:21 final size:21
Alignment explanation
Indices: 85834208--85834256 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
85834198 ATTGTTATAC
*
85834208 ATGATATGCACATGATATGTT
1 ATGATATGCACATGATATGCT
85834229 ATGATATGCACATGATATGCT
1 ATGATATGCACATGATATGCT
85834250 ATGATAT
1 ATGATAT
85834257 ACTCATTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (21 bp):
ATGATATGCACATGATATGCT
Found at i:85834336 original size:24 final size:24
Alignment explanation
Indices: 85834304--85834350 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
85834294 AGGAAGTGCA
**
85834304 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
85834327 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
85834351 ATGATAAAGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:85841423 original size:29 final size:29
Alignment explanation
Indices: 85841368--85841444 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
85841358 GTGAGCATGA
* *
85841368 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAACGGGCC
*
85841396 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAACGGGCC
* *
85841425 ATATACAGGTGATTTGGGCC
1 ATATAAATGTGATTTGGGCC
85841445 ATATGAATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 11 0.26
29 32 0.74
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAACGGGCC
Found at i:85844117 original size:27 final size:27
Alignment explanation
Indices: 85844098--85844281 Score: 235
Period size: 27 Copynumber: 6.8 Consensus size: 27
85844088 CGATTTGTAG
* *
85844098 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
* * *
85844125 AATTACCGTTTCACCCTCGTTTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
** * *
85844152 AATTACTGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTACAA
85844179 AATTACCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
*
85844206 AATTATCATTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTACAA
*
85844233 AATTACCATTTTACCCTC-AGTTTGCAA
1 AATTACCATTTTACCCTCGA-TTTACAA
* *
85844260 AATTATCGTTTTACCCTCGATT
1 AATTACCATTTTACCCTCGATT
85844282 GTGAAATTAC
Statistics
Matches: 136, Mismatches: 19, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 134 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTACAA
Found at i:85844303 original size:27 final size:27
Alignment explanation
Indices: 85844280--85844555 Score: 165
Period size: 27 Copynumber: 10.2 Consensus size: 27
85844270 TTACCCTCGA
* *
85844280 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTAAAATTACTAAAATACCCCTAGT
** *
85844306 AGGATAGAATTA-TCAAAATACCCCTAGT
1 TTG-TAAAATTACT-AAAATACCCCTAGT
*
85844334 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACTAAAATACCCCTAGT
*
85844361 TTGTAAAATTACCAAAATA-CCCTAGT
1 TTGTAAAATTACTAAAATACCCCTAGT
* * *
85844387 TTGTAAAATTA-TCGAAATACCACTGGT
1 TTGTAAAATTACT-AAAATACCCCTAGT
* ** *
85844414 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACTAAAATACCCCT-AGT
85844441 TTGTAAAATTA-TCAAAATACCCCT-GAT
1 TTGTAAAATTACT-AAAATACCCCTAG-T
** * *
85844468 TTACAAAATTAC-AGAAATACCCTTGACT
1 TTGTAAAATTACTA-AAATACCCCT-AGT
* ** *
85844496 TTCTAAAAATTA-TAGAAATACCATTGGT
1 TTGT-AAAATTACTA-AAATACCCCTAGT
** * *
85844524 TTACAAAATTACTAAAATACCCTTGGT
1 TTGTAAAATTACTAAAATACCCCTAGT
85844551 TTGTA
1 TTGTA
85844556 GATTTACCAA
Statistics
Matches: 196, Mismatches: 36, Indels: 35
0.73 0.13 0.13
Matches are distributed among these distances:
26 29 0.15
27 134 0.68
28 15 0.08
29 18 0.09
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACTAAAATACCCCTAGT
Found at i:85844354 original size:54 final size:53
Alignment explanation
Indices: 85844310--85844464 Score: 195
Period size: 53 Copynumber: 2.9 Consensus size: 53
85844300 CCCTGTAGGA
*
85844310 TAGAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTG
1 TAGAATTACCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTG
* * * * *
85844364 TAAAATTACCAAAATACCCTAGTTTGTAAAATTATCGAAATACCACTGGTTTG
1 TAGAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTG
* * *
85844417 T-GAAATTACCGAAATACCCTCAATTTGTAAAATTATCAAAATACCCCT
1 TAG-AATTACCAAAATACCCT-AGTTTGTAAAATTACCAAAATACCCCT
85844465 GATTTACAAA
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 50 0.57
54 38 0.43
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
TAGAATTACCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTG
Found at i:85844355 original size:80 final size:79
Alignment explanation
Indices: 85844271--85844465 Score: 205
Period size: 80 Copynumber: 2.4 Consensus size: 79
85844261 ATTATCGTTT
* * * *
85844271 TACCCTCGATTGTGAAATTACTGAAATACCCCTGTAGGATAGAATTATCAAAATACCCCTAGTTT
1 TACCCTCGATTGTAAAATTACTAAAATACCCCTGTAGG-TAAAATTATCAAAATACCACTAGTTT
85844336 GTAAAATTACCAAAA
65 GTAAAATTACCAAAA
* * * ** * *
85844351 TACCCCTAGTTTGTAAAATTACCAAAATA-CCCTAGTTTGTAAAATTATCGAAATACCACTGGTT
1 TA-CCCTCGATTGTAAAATTACTAAAATACCCCT-GTAGGTAAAATTATCAAAATACCACTAGTT
* *
85844415 TGTGAAATTACCGAAA
64 TGTAAAATTACCAAAA
*
85844431 TACCCTCAATTTGTAAAATTA-TCAAAATACCCCTG
1 TACCCTCGA-TTGTAAAATTACT-AAAATACCCCTG
85844466 ATTTACAAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
79 4 0.04
80 61 0.66
81 28 0.30
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (79 bp):
TACCCTCGATTGTAAAATTACTAAAATACCCCTGTAGGTAAAATTATCAAAATACCACTAGTTTG
TAAAATTACCAAAA
Found at i:85844382 original size:107 final size:107
Alignment explanation
Indices: 85844271--85844523 Score: 239
Period size: 107 Copynumber: 2.3 Consensus size: 107
85844261 ATTATCGTTT
* * * *
85844271 TACCCTCGATTGTGAAATTA-CTGAAATACCCCT-GTAGGAT-AGAATTATCAAAATACCC-CTA
1 TACCCTAGATTGTAAAATTATC-GAAATACCACTGGTAGG-TGA-AATTACCAAAATACCCTC-A
* **
85844332 GTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCA-AAA
62 ATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTA-CAGAAA
* ** *
85844378 TACCCTAGTTTGTAAAATTATCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTT
1 TACCCTAGATTGTAAAATTATCGAAATACCACTGGTAGGTGAAATTACCAAAATACCCTCAATTT
*
85844443 GTAAAATTATCAAAATACCCCTGATTTACAAAATTACAGAAA
66 GTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
* * * *
85844485 TACCCTTGACTTTCTAAAAATTATAGAAATACCATTGGT
1 TACCCTAGA--TTGT-AAAATTATCGAAATACCACTGGT
85844524 TTACAAAATT
Statistics
Matches: 120, Mismatches: 17, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
106 2 0.02
107 87 0.73
108 7 0.06
109 3 0.03
110 21 0.17
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31
Consensus pattern (107 bp):
TACCCTAGATTGTAAAATTATCGAAATACCACTGGTAGGTGAAATTACCAAAATACCCTCAATTT
GTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
Found at i:85844477 original size:54 final size:53
Alignment explanation
Indices: 85844313--85844546 Score: 204
Period size: 54 Copynumber: 4.3 Consensus size: 53
85844303 TGTAGGATAG
* * * * **
85844313 AATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATA-CCCTAATTTGTAAAATTATCAAAATACCACTGA-TTTACAA
* * * ***
85844367 AATTACCAAAATACCCTAGTTTGTAAAATTATCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCTAATTTGTAAAATTATCAAAATACCACTGATTTACAA
* *
85844420 AATTACCGAAATACCCTCAATTTGTAAAATTATCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCT-AATTTGTAAAATTATCAAAATACCACTGATTTACAA
* * * *
85844474 AATTA-CAGAAATACCCTTGACTTTCTAAAAATTAT-AGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCC-T-AATTTGT-AAAATTATCA-AAATACCACTGATTTACAA
*
85844530 AATTACTAAAATACCCT
1 AATTACCAAAATACCCT
85844547 TGGTTTGTAG
Statistics
Matches: 151, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
53 51 0.34
54 54 0.36
55 8 0.05
56 37 0.25
57 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (53 bp):
AATTACCAAAATACCCTAATTTGTAAAATTATCAAAATACCACTGATTTACAA
Found at i:85844644 original size:27 final size:27
Alignment explanation
Indices: 85844569--85844670 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 27
85844559 TTACCAAAAC
* * * * *
85844569 ACCCTTGTAGGATGAAATGACTAAAAT
1 ACCCCTGTAGGGTAAAATGACCATAAT
* *
85844596 ACCCCTAATA-GGTAAAAAGACCATAA-
1 ACCCCT-GTAGGGTAAAATGACCATAAT
* *
85844622 AGCCCCTGTAGGGTAAAGTGACCGTAAT
1 A-CCCCTGTAGGGTAAAATGACCATAAT
* *
85844650 ACCCTTGTATGGTAAAATGAC
1 ACCCCTGTAGGGTAAAATGAC
85844671 GAATATGTCC
Statistics
Matches: 57, Mismatches: 14, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
26 3 0.05
27 51 0.89
28 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
ACCCCTGTAGGGTAAAATGACCATAAT
Found at i:85845403 original size:20 final size:20
Alignment explanation
Indices: 85845394--85845444 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
85845384 TTGATATGAT
85845394 ATGCACATGATATGTATAAA
1 ATGCACATGATATGTATAAA
85845414 ATGCACATGATATGTATAAA
1 ATGCACATGATATGTATAAA
85845434 ATGCACATGAT
1 ATGCACATGAT
85845445 GTATTCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.29
Consensus pattern (20 bp):
ATGCACATGATATGTATAAA
Found at i:85845558 original size:52 final size:51
Alignment explanation
Indices: 85845502--85845629 Score: 208
Period size: 52 Copynumber: 2.5 Consensus size: 51
85845492 GCAAAAGGAT
85845502 TTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGC
*
85845554 TTATGCCCTAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGC
85845605 TT-TGCCCCAG-TTATT-AAAAGAGGCT
1 TTATGCCCCAGTTTATTGAAAAG-GGCT
85845630 AGGCCTTCAG
Statistics
Matches: 73, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
48 5 0.07
49 9 0.12
50 7 0.10
51 25 0.34
52 27 0.37
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (51 bp):
TTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGC
Found at i:85845591 original size:25 final size:26
Alignment explanation
Indices: 85845502--85845629 Score: 174
Period size: 26 Copynumber: 5.0 Consensus size: 26
85845492 GCAAAAGGAT
85845502 TTATGCCCCAGTTTATTGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGC
**
85845528 TTATGCCCCAGTTTACCGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGC
*
85845554 TTATGCCCTAGTTTATTGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGC
**
85845580 TT-TGCCCCAGTTTACCGAAAAGGGC
1 TTATGCCCCAGTTTATTGAAAAGGGC
85845605 TT-TGCCCCAG-TTATT-AAAAGAGGC
1 TTATGCCCCAGTTTATTGAAAAG-GGC
85845629 T
1 T
85845630 AGGCCTTCAG
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.08
25 30 0.33
26 49 0.54
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.29
Consensus pattern (26 bp):
TTATGCCCCAGTTTATTGAAAAGGGC
Found at i:85845821 original size:42 final size:42
Alignment explanation
Indices: 85845762--85845853 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
85845752 TAGTCTCCCC
* ** * *
85845762 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATGG
*
85845804 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATGG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATGG
85845846 AAATGGGC
1 AAATGGGC
85845854 CTATGGGCCA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATGG
Found at i:85845913 original size:31 final size:31
Alignment explanation
Indices: 85845877--85845955 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
85845867 CGTTTACAGT
* *
85845877 AAAGGCTTCGGCCTAGTGAAATTATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
85845908 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
85845939 AAAGGCTTCGGCTCAGT
1 AAAGGCTTCGGCCCAGT
85845956 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:85855366 original size:34 final size:34
Alignment explanation
Indices: 85855323--85855405 Score: 123
Period size: 34 Copynumber: 2.5 Consensus size: 34
85855313 AGAGTGAATA
*
85855323 CATTT-AGTAACAGTAGCAGTTTGGGCATTAGCC
1 CATTTCAGTAACAGTAGCAGTCTGGGCATTAGCC
* *
85855356 CATTTCAGTAACAGTAGGAGTCTGGGCTTTAGCC
1 CATTTCAGTAACAGTAGCAGTCTGGGCATTAGCC
*
85855390 CATTTCAGTAATAGTA
1 CATTTCAGTAACAGTA
85855406 ATTAGTGCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 5 0.11
34 40 0.89
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (34 bp):
CATTTCAGTAACAGTAGCAGTCTGGGCATTAGCC
Found at i:85855450 original size:18 final size:18
Alignment explanation
Indices: 85855395--85855453 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
85855385 TAGCCCATTT
* *
85855395 CAGTAATAGTAATTAGTG
1 CAGTAACAGTAATCAGTG
* * *
85855413 CAGTAACAATAAGCAATG
1 CAGTAACAGTAATCAGTG
*
85855431 CAGTAACAGTAATCGGTG
1 CAGTAACAGTAATCAGTG
85855449 CAGTA
1 CAGTA
85855454 TGCAAGCATA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.24
Consensus pattern (18 bp):
CAGTAACAGTAATCAGTG
Found at i:85855909 original size:27 final size:27
Alignment explanation
Indices: 85855797--85855909 Score: 97
Period size: 27 Copynumber: 4.2 Consensus size: 27
85855787 AACAAATCTA
* **
85855797 TCATTTTACCTTACT-A-GGTATTTTAG
1 TCATTTTACCCTA-TGAGGGTATTTCGG
* *
85855823 TCATTTTACCATA-CAGGGATATTTCGG
1 TCATTTTACCCTATGAGGG-TATTTCGG
* * * * *
85855850 TCGTTCTGCCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGAGGGTATTTCGG
85855877 TCATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGAGGGTATTTCGG
85855904 TCATTT
1 TCATTT
85855910 CATCACAAAA
Statistics
Matches: 68, Mismatches: 15, Indels: 7
0.76 0.17 0.08
Matches are distributed among these distances:
25 1 0.01
26 14 0.21
27 50 0.74
28 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATGAGGGTATTTCGG
Found at i:85856017 original size:27 final size:27
Alignment explanation
Indices: 85855903--85856019 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
85855893 GGGTATTTCG
* **
85855903 GTCATTTCATCACAAAAGGGAAAAATC
1 GTCATTTTATCACATGAGGGAAAAATC
* * *
85855930 ATTATTTTATCACATGAGGGAAAAATT
1 GTCATTTTATCACATGAGGGAAAAATC
*
85855957 GTCGTTTTATCACATGAGGGAAAAATC
1 GTCATTTTATCACATGAGGGAAAAATC
* *
85855984 GTTATTTTATCACATGAGGGGAAAATC
1 GTCATTTTATCACATGAGGGAAAAATC
*
85856011 GCCATTTTA
1 GTCATTTTA
85856020 ATCCCATAGA
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (27 bp):
GTCATTTTATCACATGAGGGAAAAATC
Found at i:85856808 original size:26 final size:26
Alignment explanation
Indices: 85856779--85856860 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
85856769 TGATACAAAT
85856779 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85856805 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85856831 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85856857 TGAT
1 TGAT
85856861 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85863895 original size:26 final size:26
Alignment explanation
Indices: 85863866--85863947 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
85863856 TGATACAAAT
85863866 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
85863892 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85863918 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
85863944 TGAT
1 TGAT
85863948 GGGAATTTCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:85867768 original size:43 final size:43
Alignment explanation
Indices: 85867720--85867881 Score: 161
Period size: 44 Copynumber: 3.8 Consensus size: 43
85867710 AAAGCTCGTA
* *
85867720 CAATGCCAACGTCCCAGACGTGGACTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATAT
* * * * *
85867763 CAATGCC-ACTGTCCTAAAAAG-GGTCTTATACGAAATCAAATA-
1 CAATGCCAAC-GTCC-CAGACGTGGTCTTACACGTAATCAAATAT
* * * *
85867805 CAATGCCAATGTCCCAGACATGGTCTTACACATAGATCATAA-GT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTA-ATCA-AATAT
85867849 CAATGCCAACGTCCCAGACGTGGTCTTACACGT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGT
85867882 TAACACATAT
Statistics
Matches: 93, Mismatches: 19, Indels: 13
0.74 0.15 0.10
Matches are distributed among these distances:
41 2 0.02
42 23 0.25
43 33 0.35
44 35 0.38
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATAT
Found at i:85872726 original size:15 final size:15
Alignment explanation
Indices: 85872682--85872751 Score: 61
Period size: 15 Copynumber: 4.7 Consensus size: 15
85872672 AGAATAGGAC
* **
85872682 AGAGTAGAACAGAGC
1 AGAGCAGAACAGAAT
85872697 AGAGCAGAACAGAAT
1 AGAGCAGAACAGAAT
*
85872712 AGAGCAGAACTGAAT
1 AGAGCAGAACAGAAT
* *
85872727 AGAACTA-AACAGAGT
1 AGAGC-AGAACAGAAT
*
85872742 GGAGCAGAAC
1 AGAGCAGAAC
85872752 GGATCAGAGC
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
14 1 0.02
15 42 0.95
16 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.29, T:0.09
Consensus pattern (15 bp):
AGAGCAGAACAGAAT
Found at i:85873812 original size:29 final size:29
Alignment explanation
Indices: 85873775--85873830 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
85873765 TACAGCCTGG
85873775 CACACAGCTTGGAACATGGCCATGTGGCT
1 CACACAGCTTGGAACATGGCCATGTGGCT
* *
85873804 CACACAGCTTGGCATATGGCCATGTGG
1 CACACAGCTTGGAACATGGCCATGTGG
85873831 TGTCGACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (29 bp):
CACACAGCTTGGAACATGGCCATGTGGCT
Found at i:85876620 original size:24 final size:24
Alignment explanation
Indices: 85876593--85876694 Score: 150
Period size: 24 Copynumber: 4.2 Consensus size: 24
85876583 AAGGCTGTCA
*
85876593 GGAGAAGATTTAAGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
85876617 GGAGATGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
85876641 GGAGAGGATGTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* *
85876665 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAAGATTTAGGAGCTGATAAG
85876689 GGAGAA
1 GGAGAA
85876695 TGGTGTTGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 71 1.00
ACGTcount: A:0.35, C:0.04, G:0.40, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:85876692 original size:12 final size:12
Alignment explanation
Indices: 85876606--85876692 Score: 54
Period size: 12 Copynumber: 7.2 Consensus size: 12
85876596 GAAGATTTAA
*
85876606 GAGCTGATAAGG
1 GAGCTGATTAGG
*
85876618 GAGATGATTTA-G
1 GAGCTGA-TTAGG
*
85876630 GAGCTGATAAGG
1 GAGCTGATTAGG
**
85876642 GAGAGGATGTA-G
1 GAGCTGAT-TAGG
*
85876654 GAGCTGATAAGG
1 GAGCTGATTAGG
**
85876666 GAGAGGATTTA-G
1 GAGCTGA-TTAGG
85876678 GAGCTGATTAGG
1 GAGCTGATTAGG
85876690 GAG
1 GAG
85876693 AATGGTGTTG
Statistics
Matches: 54, Mismatches: 15, Indels: 12
0.67 0.19 0.15
Matches are distributed among these distances:
11 6 0.11
12 43 0.80
13 5 0.09
ACGTcount: A:0.32, C:0.05, G:0.43, T:0.21
Consensus pattern (12 bp):
GAGCTGATTAGG
Found at i:85878207 original size:54 final size:53
Alignment explanation
Indices: 85878123--85878233 Score: 177
Period size: 54 Copynumber: 2.1 Consensus size: 53
85878113 AGGAAGTGTC
*
85878123 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACAT-TATCTGTT
* * *
85878177 CTGGTGGCTCTGCCACAATTATCTGTTCTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTT
85878230 CTGG
1 CTGG
85878234 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
53 12 0.23
54 41 0.77
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACACTGCCACATTATCTGTT
Found at i:85878230 original size:26 final size:26
Alignment explanation
Indices: 85878123--85878233 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
85878113 AGGAAGTGTC
*
85878123 CTGGTGGCTA-TGCCACAATTATCTGAT
1 CTGGTGGC-ACTGCCAC-ATTATCTGTT
85878150 CTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAT-TATCTGTT
*
85878177 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCACTGCCAC-ATTATCTGTT
* *
85878204 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCACTGCCACATTATCTGTT
85878230 CTGG
1 CTGG
85878234 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
26 17 0.22
27 57 0.75
28 2 0.03
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCACTGCCACATTATCTGTT
Found at i:85879522 original size:16 final size:16
Alignment explanation
Indices: 85879498--85879531 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
85879488 TCTTTTAGTT
*
85879498 TTTTTTTTTAATTTTA
1 TTTTGTTTTAATTTTA
85879514 TTTTGTTTTAATTTTA
1 TTTTGTTTTAATTTTA
85879530 TT
1 TT
85879532 AATTTAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (16 bp):
TTTTGTTTTAATTTTA
Found at i:85882291 original size:40 final size:39
Alignment explanation
Indices: 85882229--85882368 Score: 167
Period size: 40 Copynumber: 3.5 Consensus size: 39
85882219 TAATTATTGA
* *
85882229 TGATTGCAAATAGGTGGCCCTATTTGTACTTTGGTACCCT
1 TGATTGCACATACGT-GCCCTATTTGTACTTTGGTACCCT
85882269 TGATTGCACATACGTGCTCCTATTTGTA-TGTTGGTACCCCT
1 TGATTGCACATACGTGC-CCTATTTGTACT-TTGGTA-CCCT
* *
85882310 T-ATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGATTGCACATACGTG-CCCTATTTGTACTTTGGTACCCT
* *
85882349 TGAATGCACTTACGTGCCCT
1 TGATTGCACATACGTGCCCT
85882369 TGTTTATACT
Statistics
Matches: 88, Mismatches: 6, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
39 11 0.12
40 70 0.80
41 7 0.08
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (39 bp):
TGATTGCACATACGTGCCCTATTTGTACTTTGGTACCCT
Found at i:85882379 original size:40 final size:40
Alignment explanation
Indices: 85882246--85882393 Score: 136
Period size: 40 Copynumber: 3.7 Consensus size: 40
85882236 AAATAGGTGG
* * * *
85882246 CCCTATTTGTACTTTGGTACCCTTGATTGCACATACGTGC
1 CCCTATTTATACTTCGGTACCCCTGAATGCACATACGTGC
* * * * *
85882286 TCCTATTTGTA-TGTTGGTACCCCTTATTGCACATACGTGC
1 CCCTATTTATACT-TCGGTACCCCTGAATGCACATACGTGC
* *
85882326 CCCTATTTGTACTTCGGTACCCCTGAATGCACTTACGTGC
1 CCCTATTTATACTTCGGTACCCCTGAATGCACATACGTGC
* * * * *
85882366 CCTTGTTTATACTTTGTTAACCCTGAAT
1 CCCTATTTATACTTCGGTACCCCTGAAT
85882394 CAAATAGTAT
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
39 1 0.01
40 90 0.98
41 1 0.01
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.39
Consensus pattern (40 bp):
CCCTATTTATACTTCGGTACCCCTGAATGCACATACGTGC
Found at i:85884306 original size:39 final size:39
Alignment explanation
Indices: 85884219--85884453 Score: 181
Period size: 39 Copynumber: 6.0 Consensus size: 39
85884209 AATAGAAATA
* * *
85884219 CAGTGATTATTTAAGCTACGTGCCTAGCAGGCTGTATTG-
1 CAGTGATTATTTGAGCTATGTGCCTAGCAGGCTGT-GTGC
*
85884258 -AGGTAATTATTTGAGCTATGTGCCTAGCAGGCTGTGTGC
1 CA-GTGATTATTTGAGCTATGTGCCTAGCAGGCTGTGTGC
* * * * * *
85884297 CAATGATTA-TTCAGGCTATATGCCTAGAAAGCTATGTGC
1 CAGTGATTATTTGA-GCTATGTGCCTAGCAGGCTGTGTGC
* * *
85884336 CAGTGATTATTTGGGCTATTTGCCTACCAGGCTGTGTGC
1 CAGTGATTATTTGAGCTATGTGCCTAGCAGGCTGTGTGC
* * * * * *
85884375 TAGTGATTA-TTCAGGCTTTGTGCCTAGTAGGATGTGTGT
1 CAGTGATTATTTGA-GCTATGTGCCTAGCAGGCTGTGTGC
** * * * *
85884414 TGGTGATTAATCGGGCTATGTGCCTAGCAGGTTGTGTGC
1 CAGTGATTATTTGAGCTATGTGCCTAGCAGGCTGTGTGC
85884453 C
1 C
85884454 GGCGTATTGA
Statistics
Matches: 152, Mismatches: 37, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
38 8 0.05
39 140 0.92
40 4 0.03
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.34
Consensus pattern (39 bp):
CAGTGATTATTTGAGCTATGTGCCTAGCAGGCTGTGTGC
Found at i:85884321 original size:78 final size:79
Alignment explanation
Indices: 85884239--85884453 Score: 215
Period size: 78 Copynumber: 2.8 Consensus size: 79
85884229 TTAAGCTACG
* * *
85884239 TGCCTAGCAGGCTGTATTG-AGGTAATTATTTGAGCTATGTGCCTAGCAGGCTGTGTGCCAATGA
1 TGCCTAGAAGGCTGTATTGCAGGTGATTATTTGGGCTATGTGCCTAGCAGGCTGTGTGCCAATGA
85884303 TTATTCAGGCTATA
66 TTATTCAGGCTATA
* * * * *
85884317 TGCCTAGAAAGC--TATGTGCCA-GTGATTATTTGGGCTATTTGCCTACCAGGCTGTGTGCTAGT
1 TGCCTAGAAGGCTGTAT-TG-CAGGTGATTATTTGGGCTATGTGCCTAGCAGGCTGTGTGCCAAT
* *
85884379 GATTATTCAGGCTTTG
64 GATTATTCAGGCTATA
* * * ** * * *
85884395 TGCCTAGTAGGATGT-GTGTTGGTGATTAATCGGGCTATGTGCCTAGCAGGTTGTGTGCC
1 TGCCTAGAAGGCTGTATTGCAGGTGATTATTTGGGCTATGTGCCTAGCAGGCTGTGTGCC
85884454 GGCGTATTGA
Statistics
Matches: 109, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
76 3 0.03
77 2 0.02
78 102 0.94
79 1 0.01
80 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.29, T:0.34
Consensus pattern (79 bp):
TGCCTAGAAGGCTGTATTGCAGGTGATTATTTGGGCTATGTGCCTAGCAGGCTGTGTGCCAATGA
TTATTCAGGCTATA
Found at i:85889667 original size:15 final size:15
Alignment explanation
Indices: 85889635--85889663 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
85889625 ATTTTCAGTG
85889635 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
85889650 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
85889664 ATTTCCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:85889978 original size:13 final size:13
Alignment explanation
Indices: 85889957--85889986 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
85889947 CTTTTGACTG
*
85889957 AAAGTAAGAAAAT
1 AAAGAAAGAAAAT
85889970 AAAGAAAGAAAAT
1 AAAGAAAGAAAAT
85889983 AAAG
1 AAAG
85889987 CTTTAGGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.17, T:0.10
Consensus pattern (13 bp):
AAAGAAAGAAAAT
Found at i:85890836 original size:43 final size:44
Alignment explanation
Indices: 85890788--85890957 Score: 142
Period size: 43 Copynumber: 4.0 Consensus size: 44
85890778 AGGGTTTCCA
*
85890788 ATATGTG-TTCTAGTGTAAGACCATGTCTAGGACGTTGGCATCG
1 ATATGTGATTCTAGTGTAAGACCATGTCTGGGACGTTGGCATCG
* *
85890831 ATATGTGATT-TCA-AGTAAGACCATGTCTGGGACATTGGCATCG
1 ATATGTGATTCT-AGTGTAAGACCATGTCTGGGACGTTGGCATCG
* * *
85890874 -TAATTGTGATTC--GTGTAAAACCCTATCTGGGACAG-TGGCATCG
1 AT-A-TGTGATTCTAGTGTAAGACCATGTCTGGGAC-GTTGGCATCG
* * * *
85890917 ACATGTGA--CTACATGTAAGACCACGTCTGGAACGTTGGCAT
1 ATATGTGATTCTA-GTGTAAGACCATGTCTGGGACGTTGGCAT
85890958 TGTACGGTAT
Statistics
Matches: 100, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
40 1 0.01
42 7 0.07
43 82 0.82
44 10 0.10
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
ATATGTGATTCTAGTGTAAGACCATGTCTGGGACGTTGGCATCG
Found at i:85894832 original size:27 final size:27
Alignment explanation
Indices: 85894770--85894881 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
85894760 AGCATGGCTG
** *
85894770 CCAGAACAGATAA-TGTGATAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
85894796 CGAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
85894824 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
85894851 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
85894878 CCAG
1 CCAG
85894882 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.68
28 16 0.22
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:85894861 original size:54 final size:54
Alignment explanation
Indices: 85894770--85894881 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
85894760 AGCATGGCTG
* * * *
85894770 CCAGAACAGATAATGTGATAGAGTCACGAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
85894824 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
85894878 CCAG
1 CCAG
85894882 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.68
55 16 0.32
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:85898782 original size:41 final size:43
Alignment explanation
Indices: 85898677--85898923 Score: 240
Period size: 45 Copynumber: 5.7 Consensus size: 43
85898667 GATATGTTTT
** *
85898677 TTCGTGTAAGACCACGTCTGGGATGTTGGCATCGATATATGTGG
1 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATAT-TGA
* *
85898721 TTACGTGTAAGACCATGTCTGGGACATCGGCATCG-TA-ATTGA
1 TT-CGTGTAAGACCACGTCTGGGACATTGGCATCGATATATTGA
* *
85898763 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATAGATGG
1 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATA-TTGA
*
85898807 TTACGTGTAAGACCATGTCTGGGACATAT-GCATCG-TAT-TTGA
1 TT-CGTGTAAGACCACGTCTGGGACAT-TGGCATCGATATATTGA
* *
85898849 TTCATGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGA--GA
1 TTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGATAT-ATTGA
* * * *
85898891 TAGCATGTAAGACCCCGTTTGGGACATTGGCAT
1 T-TCGTGTAAGACCACGTCTGGGACATTGGCAT
85898924 TTTTGGATAT
Statistics
Matches: 172, Mismatches: 18, Indels: 27
0.79 0.08 0.12
Matches are distributed among these distances:
40 1 0.01
41 56 0.33
42 16 0.09
43 29 0.17
44 12 0.07
45 57 0.33
46 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATATTGA
Found at i:85898822 original size:86 final size:86
Alignment explanation
Indices: 85898677--85898891 Score: 326
Period size: 86 Copynumber: 2.5 Consensus size: 86
85898667 GATATGTTTT
**
85898677 TTCGTGTAAGACCACGTCTGGGATGTTGGCATCGATATATG-TGGTTACGTGTAAGACCATGTCT
1 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATA-GATGGTTACGTGTAAGACCATGTCT
*
85898741 GGGACATCGGCATCGTAATTGA
65 GGGACATAGGCATCGTAATTGA
85898763 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATAGATGGTTACGTGTAAGACCATGTCTG
1 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATAGATGGTTACGTGTAAGACCATGTCTG
* *
85898828 GGACATATGCATCGTATTTGA
66 GGACATAGGCATCGTAATTGA
* *
85898849 TTCATGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGAGAT
1 TTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGATAT-AGAT
85898892 AGCATGTAAG
Statistics
Matches: 119, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
85 2 0.02
86 113 0.95
87 4 0.03
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (86 bp):
TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATAGATGGTTACGTGTAAGACCATGTCTG
GGACATAGGCATCGTAATTGA
Found at i:85901866 original size:16 final size:15
Alignment explanation
Indices: 85901841--85901871 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
85901831 AACATCTCAG
85901841 AAAAATAAAGAATAC
1 AAAAATAAAGAATAC
85901856 AAAACATAAAGAATAC
1 AAAA-ATAAAGAATAC
85901872 CCAAAACTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.71, C:0.10, G:0.06, T:0.13
Consensus pattern (15 bp):
AAAAATAAAGAATAC
Found at i:85906883 original size:27 final size:26
Alignment explanation
Indices: 85906868--85906935 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
85906858 ATTAAGTCCG
85906868 CACACTCAGTGCTATATAATCAACTCA
1 CACACTCAGTGCTATAT-ATCAACTCA
* *
85906895 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTCAGTGCTATAT-ATC-AACTCA
*
85906923 CACACTTAGTGCT
1 CACACTCAGTGCT
85906936 GTACAATTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 20 0.53
28 18 0.47
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (26 bp):
CACACTCAGTGCTATATATCAACTCA
Found at i:85906929 original size:28 final size:28
Alignment explanation
Indices: 85906866--85906963 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
85906856 ATATTAAGTC
*
85906866 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
85906893 CACACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
85906921 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
85906950 CGCACACTTAGTGC
1 CGCACACTTAGTGC
85906964 CAATCTAATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.34
28 22 0.35
29 19 0.31
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:85911152 original size:15 final size:15
Alignment explanation
Indices: 85911120--85911148 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
85911110 ACTTTCTATG
85911120 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
85911135 TTTATT-TGTGTGAA
1 TTTATTATGTGTGAA
85911149 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:85912363 original size:41 final size:44
Alignment explanation
Indices: 85912260--85912441 Score: 187
Period size: 45 Copynumber: 4.2 Consensus size: 44
85912250 ATGTGTTTTT
* * * * *
85912260 GTGTAAGACCGCATCTGGGACGTTGGCATCGATATATGTCGTTTT
1 GTGTAAGACCACATCTGGGACATCGGCATCGATATATGT-GATTC
** *
85912305 GTGTAAGACCATGTCTGGGACATCAGCATCG-TAT-T-TGATTC
1 GTGTAAGACCACATCTGGGACATCGGCATCGATATATGTGATTC
* * *
85912346 GTGTAAGACCACATCTGGGACGTTGGCATCGATATATGTGGTTAC
1 GTGTAAGACCACATCTGGGACATCGGCATCGATATATGTGATT-C
*
85912391 GTGTAAGACCACGTCTGGGACATCGGCATCG-TAT-T-TGATTC
1 GTGTAAGACCACATCTGGGACATCGGCATCGATATATGTGATTC
*
85912432 ATGTAAGACC
1 GTGTAAGACC
85912442 CTGTCTAGGA
Statistics
Matches: 114, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
41 39 0.34
42 8 0.07
43 3 0.03
44 10 0.09
45 54 0.47
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (44 bp):
GTGTAAGACCACATCTGGGACATCGGCATCGATATATGTGATTC
Found at i:85912407 original size:86 final size:86
Alignment explanation
Indices: 85912260--85912441 Score: 301
Period size: 86 Copynumber: 2.1 Consensus size: 86
85912250 ATGTGTTTTT
* ** *
85912260 GTGTAAGACCGCATCTGGGACGTTGGCATCGATATATGTCGTTTTGTGTAAGACCATGTCTGGGA
1 GTGTAAGACCACATCTGGGACGTTGGCATCGATATATGTCGTTACGTGTAAGACCACGTCTGGGA
85912325 CATCAGCATCGTATTTGATTC
66 CATCAGCATCGTATTTGATTC
*
85912346 GTGTAAGACCACATCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCACGTCTGGGA
1 GTGTAAGACCACATCTGGGACGTTGGCATCGATATATGTCGTTACGTGTAAGACCACGTCTGGGA
*
85912411 CATCGGCATCGTATTTGATTC
66 CATCAGCATCGTATTTGATTC
*
85912432 ATGTAAGACC
1 GTGTAAGACC
85912442 CTGTCTAGGA
Statistics
Matches: 89, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 89 1.00
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (86 bp):
GTGTAAGACCACATCTGGGACGTTGGCATCGATATATGTCGTTACGTGTAAGACCACGTCTGGGA
CATCAGCATCGTATTTGATTC
Found at i:85912459 original size:86 final size:86
Alignment explanation
Indices: 85912261--85912495 Score: 273
Period size: 86 Copynumber: 2.8 Consensus size: 86
85912251 TGTGTTTTTG
* * * * ** *
85912261 TGTAAGACCGCATCTGGGACGTTGGCATCGATATATGTCGTTTTGTGTAAGACCATGTCTGGGAC
1 TGTAAGACCACATCTAGGAAGTTGGCATCGATATATGTGGTTACGTGTAAGACCACGTCTGGGAC
*
85912326 ATCAGCATCGTATTTGATTCG
66 ATCAGCATCGTATTTGATTCA
* *
85912347 TGTAAGACCACATCTGGGACGTTGGCATCGATATATGTGGTTACGTGTAAGACCACGTCTGGGAC
1 TGTAAGACCACATCTAGGAAGTTGGCATCGATATATGTGGTTACGTGTAAGACCACGTCTGGGAC
*
85912412 ATCGGCATCGTATTTGATTCA
66 ATCAGCATCGTATTTGATTCA
* * * *
85912433 TGTAAGACC-CTGTCTAGGATAG-TGGCATCG--ATATG-GGATAGCATGTAAGACCACATCTGG
1 TGTAAGACCAC-ATCTAGGA-AGTTGGCATCGATATATGTGGTTA-CGTGTAAGACCACGTCTGG
85912493 GAC
63 GAC
85912496 GTTGGCATTG
Statistics
Matches: 133, Mismatches: 13, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
83 4 0.03
84 25 0.19
85 1 0.01
86 102 0.77
87 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (86 bp):
TGTAAGACCACATCTAGGAAGTTGGCATCGATATATGTGGTTACGTGTAAGACCACGTCTGGGAC
ATCAGCATCGTATTTGATTCA
Found at i:85915067 original size:27 final size:27
Alignment explanation
Indices: 85915008--85915081 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
85914998 TTGGAGGAAG
*
85915008 TACTG-TACTGGTGGCTTTGCCATAAC
1 TACTGTTACTGGTGGCTTTGCCACAAC
* **
85915034 TATTGTTACTGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTTTGCCACAAC
**
85915061 TACTGTTACTGGCAGCTTTGC
1 TACTGTTACTGGTGGCTTTGC
85915082 TGCGATATTG
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 4 0.10
27 36 0.90
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.39
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTTGCCACAAC
Found at i:85936587 original size:15 final size:15
Alignment explanation
Indices: 85936567--85936609 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
85936557 TAGTGTAATT
*
85936567 TGGATTTCCTTATCA
1 TGGATTTCTTTATCA
*
85936582 TGGATTTCTTTATCT
1 TGGATTTCTTTATCA
85936597 TGGATTTCTTTAT
1 TGGATTTCTTTAT
85936610 TCTGGGCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.16, C:0.14, G:0.14, T:0.56
Consensus pattern (15 bp):
TGGATTTCTTTATCA
Found at i:85941574 original size:42 final size:43
Alignment explanation
Indices: 85941526--85941630 Score: 142
Period size: 44 Copynumber: 2.4 Consensus size: 43
85941516 GATGCCACAA
* * * *
85941526 TCCCAGAGATGGTCTTACAC-GAAATCATATA-CGATGCCTATG
1 TCCCAGATATGGTCTTACACGGAAATCACA-AGCGATGCCAACG
85941568 TCCCAGATATGGTCTTACACGGAAATCACAAGTCGATGCCAACG
1 TCCCAGATATGGTCTTACACGGAAATCACAAG-CGATGCCAACG
85941612 TCCCAGATATGGTCTTACA
1 TCCCAGATATGGTCTTACA
85941631 TGATATCACA
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
42 20 0.36
43 8 0.14
44 28 0.50
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (43 bp):
TCCCAGATATGGTCTTACACGGAAATCACAAGCGATGCCAACG
Found at i:85941616 original size:44 final size:40
Alignment explanation
Indices: 85941484--85941630 Score: 150
Period size: 43 Copynumber: 3.5 Consensus size: 40
85941474 GGTGTTACAA
* * * *
85941484 CCCAGATGTGGTCTTACATGTAATCAAATATCGATGCCACAAT
1 CCCAGATATGGTCTTACACGAAATC-AA-ATCGATGCCAC-GT
* * *
85941527 CCCAGAGATGGTCTTACACGAAATCATATACGATGCCTATGT
1 CCCAGATATGGTCTTACACGAAATCAAAT-CGATGCC-ACGT
85941569 CCCAGATATGGTCTTACACGGAAATCACAAGTCGATGCCAACGT
1 CCCAGATATGGTCTTACAC-GAAATCA-AA-TCGATGCC-ACGT
85941613 CCCAGATATGGTCTTACA
1 CCCAGATATGGTCTTACA
85941631 TGATATCACA
Statistics
Matches: 88, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
41 2 0.02
42 27 0.31
43 29 0.33
44 29 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.25
Consensus pattern (40 bp):
CCCAGATATGGTCTTACACGAAATCAAATCGATGCCACGT
Found at i:85953626 original size:29 final size:29
Alignment explanation
Indices: 85953579--85953650 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
85953569 CACTTGGCCT
* *
85953579 AATCTCATTTATATGGCCCATCAGGCCCA
1 AATCACATTCATATGGCCCATCAGGCCCA
* *
85953608 ATTCACATTCATATGGCCCATTAGGCCCA
1 AATCACATTCATATGGCCCATCAGGCCCA
*
85953637 AATCACATGCATAT
1 AATCACATTCATAT
85953651 TCATGCTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.28
Consensus pattern (29 bp):
AATCACATTCATATGGCCCATCAGGCCCA
Found at i:85957173 original size:51 final size:51
Alignment explanation
Indices: 85957084--85957183 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
85957074 AGATATGTGG
*
85957084 CATCCGAGCTCGTTGAGAGGTCCAAGTTCATGGTGGATGTGATT-CATGTAA
1 CATCCGAGCTCGTTGAGAGGTCCAAGTTCATAGTGGATGTG-TTACATGTAA
* * *
85957135 CATCCGAGCTCGTTGAGAGGTTCGAGTTCGTTAG-GGATGTGTTACATGT
1 CATCCGAGCTCGTTGAGAGGTCCAAGTTC-ATAGTGGATGTGTTACATGT
85957184 TATGTGGTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 2 0.05
51 39 0.91
52 2 0.05
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGTCCAAGTTCATAGTGGATGTGTTACATGTAA
Found at i:85958419 original size:42 final size:42
Alignment explanation
Indices: 85958373--85958505 Score: 194
Period size: 42 Copynumber: 3.2 Consensus size: 42
85958363 TGTGTCTCAA
* * *
85958373 CCGTGTAGAGGACACGGCCTAGCACACGGGCGTACGCCTTGG
1 CCGTGTGGATGACACGGCCTAGCGCACGGGCGTACGCCTTGG
*
85958415 CCGTGTGGATGACACGACCTAGCGCACGGGCGTACGCCTTGG
1 CCGTGTGGATGACACGGCCTAGCGCACGGGCGTACGCCTTGG
* **
85958457 CCGTGTGGATGACACAGCCTAGCGCACGGGCGTGTGCCTTGG
1 CCGTGTGGATGACACGGCCTAGCGCACGGGCGTACGCCTTGG
*
85958499 CCATGTG
1 CCGTGTG
85958506 CTCCTAAATG
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.17, C:0.30, G:0.36, T:0.17
Consensus pattern (42 bp):
CCGTGTGGATGACACGGCCTAGCGCACGGGCGTACGCCTTGG
Done.