Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 253 of 345
Found at i:85960136 original size:29 final size:29
Alignment explanation
Indices: 85960094--85960339 Score: 206
Period size: 29 Copynumber: 8.4 Consensus size: 29
85960084 ATGACGCATC
*
85960094 AACGACTATCGACTATGAAAAGGGATGGT
1 AACGACCATCGACTATGAAAAGGGATGGT
* * *
85960123 AACGACCATTGACTATGAAAGGGGATAGT
1 AACGACCATCGACTATGAAAAGGGATGGT
***
85960152 TTTGACCATCGACTATGAAAAGGGATGGT
1 AACGACCATCGACTATGAAAAGGGATGGT
* *
85960181 GACGACCATCAACTATGAAAAGGGATGGT
1 AACGACCATCGACTATGAAAAGGGATGGT
* * *
85960210 AGTGACAACCATCAACTATGAAAAGTGAT-GT
1 A---ACGACCATCGACTATGAAAAGGGATGGT
* * * * * **
85960241 GATGACCATCGAATATAAAAAAGGATACT
1 AACGACCATCGACTATGAAAAGGGATGGT
** *
85960270 TTCGACTATCGACTATGAAAAGGGATGGT
1 AACGACCATCGACTATGAAAAGGGATGGT
* * *
85960299 GACAACCATCGATTAATGAAAAGGGATGGT
1 AACGACCATCGACT-ATGAAAAGGGATGGT
**
85960329 TTCGACCATCG
1 AACGACCATCG
85960340 TTAGCATATT
Statistics
Matches: 169, Mismatches: 43, Indels: 9
0.76 0.19 0.04
Matches are distributed among these distances:
28 18 0.11
29 103 0.61
30 23 0.14
31 2 0.01
32 23 0.14
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.22
Consensus pattern (29 bp):
AACGACCATCGACTATGAAAAGGGATGGT
Found at i:85960196 original size:58 final size:58
Alignment explanation
Indices: 85960096--85960339 Score: 249
Period size: 58 Copynumber: 4.2 Consensus size: 58
85960086 GACGCATCAA
* * ** *
85960096 CGACTATCGACTATGAAAAGGGATGGTAACGACCATTGACTATGAAAGGGGATAGTTT
1 CGACCATCGACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATAGTTT
* **
85960154 TGACCATCGACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGTAGTGA
1 CGACCATCGACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGA---TAGTTT
* * * * * * *
85960215 CAACCATCAACTATGAAAAGTGAT-GTGATGACCATCGAA-TATAAAAAAGGATACTTT
1 CGACCATCGACTATGAAAAGGGATGGTGACGACCATC-AACTATGAAAAGGGATAGTTT
* * * * *
85960272 CGACTATCGACTATGAAAAGGGATGGTGACAACCATCGATTAATGAAAAGGGATGGTTT
1 CGACCATCGACTATGAAAAGGGATGGTGACGACCATCAACT-ATGAAAAGGGATAGTTT
85960331 CGACCATCG
1 CGACCATCG
85960340 TTAGCATATT
Statistics
Matches: 149, Mismatches: 30, Indels: 13
0.78 0.16 0.07
Matches are distributed among these distances:
57 24 0.16
58 57 0.38
59 21 0.14
60 21 0.14
61 26 0.17
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (58 bp):
CGACCATCGACTATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATAGTTT
Found at i:85961191 original size:21 final size:21
Alignment explanation
Indices: 85961167--85961216 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
85961157 CATTTTGGAT
85961167 GCTTGAATATCAGTGTCAA-TG
1 GCTTGAATATCAGTGT-AATTG
85961188 GCTTGAATATCAGTGTAATTG
1 GCTTGAATATCAGTGTAATTG
85961209 GCTTGAAT
1 GCTTGAAT
85961217 GTGTAAGCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (21 bp):
GCTTGAATATCAGTGTAATTG
Found at i:85962720 original size:40 final size:40
Alignment explanation
Indices: 85962657--85962737 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
85962647 AATTATTGAA
*
85962657 TGATTGCACATACATGCCGCTGTTTGTACTTCGGTACCCC
1 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
** * *
85962697 TGATTGCACATATGTGCCCCTGTTTGTACTTTGGTATCCC
1 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
85962737 T
1 T
85962738 ATTTGTACTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.37
Consensus pattern (40 bp):
TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:85962772 original size:60 final size:60
Alignment explanation
Indices: 85962679--85962797 Score: 202
Period size: 60 Copynumber: 2.0 Consensus size: 60
85962669 CATGCCGCTG
* * * *
85962679 TTTGTACTTCGGTACCCCTGATTGCACATATGTGCCCCTGTTTGTACTTTGGTATCCCTA
1 TTTGTACTTCGATACCCCTGATTGCACATATGTGCCCCTATTTGTACTTAGGTACCCCTA
85962739 TTTGTACTTCGATACCCCTGATTGCACATATGTGCCCCTATTTGTACTTAGGTACCCCT
1 TTTGTACTTCGATACCCCTGATTGCACATATGTGCCCCTATTTGTACTTAGGTACCCCT
85962798 GAACGCATTT
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.39
Consensus pattern (60 bp):
TTTGTACTTCGATACCCCTGATTGCACATATGTGCCCCTATTTGTACTTAGGTACCCCTA
Found at i:85962796 original size:20 final size:20
Alignment explanation
Indices: 85962679--85962797 Score: 80
Period size: 20 Copynumber: 6.0 Consensus size: 20
85962669 CATGCCGCTG
*
85962679 TTTGTACTTCGGTACCCCTGA
1 TTTGTACTTAGGTACCCCT-A
* * * * *
85962700 -TTGCACATATGTGCCCCTG
1 TTTGTACTTAGGTACCCCTA
* *
85962719 TTTGTACTTTGGTATCCCTA
1 TTTGTACTTAGGTACCCCTA
* *
85962739 TTTGTACTTCGATACCCCTGA
1 TTTGTACTTAGGTACCCCT-A
* * * *
85962760 -TTGCACATATGTGCCCCTA
1 TTTGTACTTAGGTACCCCTA
85962779 TTTGTACTTAGGTACCCCT
1 TTTGTACTTAGGTACCCCT
85962798 GAACGCATTT
Statistics
Matches: 69, Mismatches: 26, Indels: 7
0.68 0.25 0.07
Matches are distributed among these distances:
19 1 0.01
20 67 0.97
21 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.39
Consensus pattern (20 bp):
TTTGTACTTAGGTACCCCTA
Found at i:85964063 original size:37 final size:37
Alignment explanation
Indices: 85964013--85964088 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
85964003 TCAAAGAAAG
85964013 TAGAATTGGGGAATTACTTTTGGAAAAACGATTGAAT
1 TAGAATTGGGGAATTACTTTTGGAAAAACGATTGAAT
*
85964050 TAGAATTGGGGAATTACTTTTTGAAAAACGATTGAAT
1 TAGAATTGGGGAATTACTTTTGGAAAAACGATTGAAT
85964087 TA
1 TA
85964089 AGACAATACC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.38, C:0.05, G:0.22, T:0.34
Consensus pattern (37 bp):
TAGAATTGGGGAATTACTTTTGGAAAAACGATTGAAT
Found at i:86005751 original size:44 final size:45
Alignment explanation
Indices: 86005681--86005793 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 45
86005671 TTGCAGATAC
86005681 CATGT-CTCAGACATAGTCTTACACTGAC-ACATCTCGTAG-CCGATG
1 CATGTCCT-AGACAT-GTCTTACACTGACTACATCTCG-AGACCGATG
* *
86005726 CATGTCCTAGACATGTCTTACACTGACTTACGTCTCGAGACTGATG
1 CATGTCCTAGACATGTCTTACACTGAC-TACATCTCGAGACCGATG
* *
86005772 CATGTCCCAGACATGCCTTACA
1 CATGTCCTAGACATGTCTTACA
86005794 GTAGCACTTG
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
44 13 0.22
45 13 0.22
46 34 0.57
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (45 bp):
CATGTCCTAGACATGTCTTACACTGACTACATCTCGAGACCGATG
Found at i:86005807 original size:46 final size:45
Alignment explanation
Indices: 86005719--86005843 Score: 128
Period size: 46 Copynumber: 2.7 Consensus size: 45
86005709 ACATCTCGTA
* * *
86005719 GCCGATGCATGTCCTAGACATGTCTTACACTGACTTACGTCTCGA-
1 GCCGATGCATGTCCCAGACATGCCTTACACTGACTTA-GTCTCAAT
* *
86005764 GACTGATGCATGTCCCAGACATGCCTTACAGTAGCACTT-GTCTCAAT
1 G-CCGATGCATGTCCCAGACATGCCTTACACT-G-ACTTAGTCTCAAT
*
86005811 GCCGATGCCATGTCCCAGACATGGTCTTACACT
1 GCCGATG-CATGTCCCAGACAT-GCCTTACACT
86005844 ATCTCTCAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
45 1 0.02
46 37 0.56
47 16 0.24
48 12 0.18
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGCCTTACACTGACTTAGTCTCAAT
Found at i:86017729 original size:13 final size:13
Alignment explanation
Indices: 86017711--86017743 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
86017701 CAAGGACACG
86017711 CCCGTGTCCTTCA
1 CCCGTGTCCTTCA
86017724 CCCGTGTCCTTCA
1 CCCGTGTCCTTCA
86017737 CCCGTGT
1 CCCGTGT
86017744 GGAATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.45, G:0.18, T:0.30
Consensus pattern (13 bp):
CCCGTGTCCTTCA
Found at i:86018917 original size:37 final size:37
Alignment explanation
Indices: 86018858--86018966 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
86018848 AGCTCAGACG
* * *
86018858 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
86018895 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86018932 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
86018967 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:86019237 original size:48 final size:48
Alignment explanation
Indices: 86019112--86019296 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
86019102 GCACATCGCC
*
86019112 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
86019162 TATATATTTCACATT-GACCATTTGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
86019210 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
86019258 TACACATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
86019297 TGCATGTTCA
Statistics
Matches: 125, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
48 82 0.66
49 2 0.02
50 41 0.33
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:86019301 original size:98 final size:97
Alignment explanation
Indices: 86019112--86019295 Score: 300
Period size: 98 Copynumber: 1.9 Consensus size: 97
86019102 GCACATCGCC
* *
86019112 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACACATTTCACATT
*
86019177 GACCATTTGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
86019210 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACACATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACACATTTCACATTG
86019273 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
86019296 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 34 0.42
98 46 0.57
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.36
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACACATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:86019345 original size:47 final size:47
Alignment explanation
Indices: 86019266--86019506 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
86019256 CATACACATT
* * * *
86019266 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
86019313 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
86019360 TCACGTTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86019407 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
86019454 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86019501 TCACAT
1 TCACAT
86019507 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:86019434 original size:22 final size:22
Alignment explanation
Indices: 86019406--86019477 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
86019396 GTTCACATTC
86019406 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
86019428 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
86019452 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
86019475 ATC
1 ATC
86019478 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:86023385 original size:40 final size:40
Alignment explanation
Indices: 86023353--86023781 Score: 720
Period size: 40 Copynumber: 10.8 Consensus size: 40
86023343 CCAGCATGAT
* * * *
86023353 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86023393 TGCTCTTCGGAACTTATCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
86023433 TGCTCTTCGGGACTTAGTTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86023473 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86023513 TGCT-TTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86023552 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86023592 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGAACTAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86023632 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86023671 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86023711 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86023750 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
86023782 CTCAATTCTC
Statistics
Matches: 365, Mismatches: 21, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
39 113 0.31
40 252 0.69
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:86023562 original size:79 final size:80
Alignment explanation
Indices: 86023353--86023781 Score: 720
Period size: 79 Copynumber: 5.4 Consensus size: 80
86023343 CCAGCATGAT
* * * * * *
86023353 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTTATCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
86023418 CATCACTAGCACGAA
66 CATCACTAGCACGAA
**
86023433 TGCTCTTCGGGACTTAGTTCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
86023498 CATCACTAGCACGAA
66 CATCACTAGCACGAA
86023513 TGCT-TTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
86023577 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* *
86023592 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGAACTAATGCTCTTC-GGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
86023656 CATCACTAGCACGAA
66 CATCACTAGCACGAA
* *
86023671 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAATGCTCTTC-GGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
86023735 CATCACTAGCACGAA
66 CATCACTAGCACGAA
*
86023750 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
86023782 CTCAATTCTC
Statistics
Matches: 331, Mismatches: 17, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
79 214 0.65
80 117 0.35
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAA
Found at i:86023565 original size:119 final size:119
Alignment explanation
Indices: 86023353--86023781 Score: 711
Period size: 119 Copynumber: 3.6 Consensus size: 119
86023343 CCAGCATGAT
* * * * * *
86023353 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGAACTTATCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
86023418 CATCACTAGCACGAATGCTCTTCGGGACTTAGTTCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAA
86023473 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCT-TTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
86023537 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGGACTTAG-CCGGATACATCACTAGCACGAA
* *
86023592 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGAACTAATGCTCTTC-GGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
86023656 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
66 CATCACTAGCACGAATGCTCTTCGGGACTTAGCC-GGATACATCACTAGCACGAA
86023711 TGCTCTTC-GGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
86023775 TATCACT
66 CATCACT
86023782 CTCAATTCTC
Statistics
Matches: 292, Mismatches: 14, Indels: 7
0.93 0.04 0.02
Matches are distributed among these distances:
118 39 0.13
119 210 0.72
120 43 0.15
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (119 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
CATCACTAGCACGAATGCTCTTCGGGACTTAGCCGGATACATCACTAGCACGAA
Found at i:86025106 original size:37 final size:37
Alignment explanation
Indices: 86025047--86025155 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
86025037 AGCTCAGACG
* * *
86025047 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
86025084 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86025121 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
86025156 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:86025424 original size:48 final size:48
Alignment explanation
Indices: 86025300--86025484 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
86025290 GCACATCGCC
*
86025300 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
86025350 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
86025398 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
86025446 TACACATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
86025485 TGCATGTTCA
Statistics
Matches: 127, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
48 83 0.65
49 2 0.02
50 42 0.33
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:86025489 original size:98 final size:97
Alignment explanation
Indices: 86025300--86025483 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 97
86025290 GCACATCGCC
* *
86025300 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACACATTTCACATT
86025365 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
86025398 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACACATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACACATTTCACATTG
86025461 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
86025484 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 46 0.56
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACACATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:86025533 original size:47 final size:47
Alignment explanation
Indices: 86025454--86025694 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
86025444 CATACACATT
* * * *
86025454 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
86025501 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
86025548 TCACGTTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86025595 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
86025642 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86025689 TCACAT
1 TCACAT
86025695 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:86025622 original size:22 final size:22
Alignment explanation
Indices: 86025594--86025665 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
86025584 GTTCACATTC
86025594 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
86025616 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
86025640 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
86025663 ATC
1 ATC
86025666 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:86029945 original size:27 final size:27
Alignment explanation
Indices: 86029912--86030116 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
86029902 TAAATTGTAC
86029912 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
86029939 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86029966 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86029992 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86030020 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86030048 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86030075 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86030102 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86030117 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86030080 original size:109 final size:108
Alignment explanation
Indices: 86029913--86030116 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
86029903 AAATTGTACA
* *
86029913 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
86029978 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
86030021 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
86030086 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
86030117 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:86038202 original size:27 final size:27
Alignment explanation
Indices: 86038165--86038369 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
86038155 TAAATTGTAC
86038165 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
86038192 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86038219 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86038245 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86038273 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86038301 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86038328 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86038355 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86038370 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86038304 original size:109 final size:108
Alignment explanation
Indices: 86038166--86038369 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
86038156 AAATTGTACA
* *
86038166 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
86038231 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
86038274 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
86038339 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
86038370 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:86041669 original size:40 final size:40
Alignment explanation
Indices: 86041633--86042143 Score: 880
Period size: 40 Copynumber: 12.8 Consensus size: 40
86041623 CCAGCATGAT
* * * *
86041633 TGCTCTTCGGGACCTAGCCCGGATATAACACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86041673 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
86041713 TGCTCTTCGGGACTTAGTTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86041753 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86041793 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86041833 TGCTCTTC-GGACTTAGCTCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86041872 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86041912 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86041952 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGAACTAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86041992 TGCTCTTAGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86042032 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86042072 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86042112 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
86042144 CTCAATTCTC
Statistics
Matches: 445, Mismatches: 25, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
39 38 0.09
40 407 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:86041889 original size:23 final size:23
Alignment explanation
Indices: 86041863--86041969 Score: 58
Period size: 23 Copynumber: 5.2 Consensus size: 23
86041853 GATACATCAC
86041863 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
86041886 TAGCCCGGAT--ACATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
86041903 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
86041926 TAGCCCGGAT--ACATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
86041943 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
86041966 TAGC
1 TAGC
86041970 CCGGATACAT
Statistics
Matches: 56, Mismatches: 16, Indels: 24
0.58 0.17 0.25
Matches are distributed among these distances:
17 16 0.29
18 4 0.07
19 6 0.11
21 6 0.11
22 4 0.07
23 20 0.36
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.23
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Found at i:86043469 original size:37 final size:37
Alignment explanation
Indices: 86043410--86043518 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
86043400 AGCTCAGACG
* * *
86043410 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGATA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
86043447 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86043484 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
86043519 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:86043788 original size:48 final size:48
Alignment explanation
Indices: 86043664--86043848 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
86043654 GCACATCGCC
*
86043664 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
86043714 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
86043762 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
86043810 TACACATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
86043849 TGCATGTTCA
Statistics
Matches: 127, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
48 83 0.65
49 2 0.02
50 42 0.33
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:86043853 original size:98 final size:97
Alignment explanation
Indices: 86043664--86043847 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 97
86043654 GCACATCGCC
* *
86043664 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA-ATACACATTTCACATT
86043729 GACCATTCGGCTTTACCACATATGCATATCTCA
65 GACCATTCGGCTTTACCACATATGCATATCTCA
*
86043762 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC-ATACACATTTCACATT-
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACACATTTCACATTG
86043825 AGCCATTCGGCTTTACCACATAT
66 A-CCATTCGGCTTTACCACATAT
86043848 ATGCATGTTC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 35 0.43
98 46 0.56
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.35
Consensus pattern (97 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAATACACATTTCACATTG
ACCATTCGGCTTTACCACATATGCATATCTCA
Found at i:86043897 original size:47 final size:47
Alignment explanation
Indices: 86043818--86044058 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
86043808 CATACACATT
* * * *
86043818 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
86043865 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
86043912 TCACGTTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86043959 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
86044006 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86044053 TCACAT
1 TCACAT
86044059 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:86043986 original size:22 final size:22
Alignment explanation
Indices: 86043958--86044029 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
86043948 GTTCACATTC
86043958 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
86043980 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
86044004 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
86044027 ATC
1 ATC
86044030 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:86047374 original size:46 final size:46
Alignment explanation
Indices: 86047324--86047538 Score: 192
Period size: 46 Copynumber: 4.6 Consensus size: 46
86047314 ATCTCGTACT
*
86047324 CGATGCATGTCCCAGACATGTCTTACACCGGCTTATGTCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTTGAGGC
* * * *
86047370 CGATGCATGTCCCAGACATGTCTTACATTAGCACTCATCTCGTT---GC
1 CGATGCATGTCCCAGACATGTCTTACACT-G-GCTTATGTC-TTGAGGC
* * *
86047416 CGATGCATGTCCCAGACATGTCTTACACTAGC--ACTCGTCTCGATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTA-T-GTCTTGAGGC
** * *
86047462 CGATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCA--TAATGTGGT
1 CGATGC-ATGTCCCAGACAT-GTCTTACACTGGCT-T-ATGTCTTGAGGC
86047510 CGATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
86047539 AGCTCACAAT
Statistics
Matches: 138, Mismatches: 17, Indels: 28
0.75 0.09 0.15
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 3 0.02
46 75 0.54
47 27 0.20
48 27 0.20
49 2 0.01
52 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTATGTCTTGAGGC
Found at i:86047440 original size:92 final size:92
Alignment explanation
Indices: 86047277--86047537 Score: 291
Period size: 92 Copynumber: 2.8 Consensus size: 92
86047267 GTAAGGTGCT
* *
86047277 GATGCCATGTCTCAGACATGGTCTTACACTG-ACTATCATCTCG-TACTCGATGCATGTCCCAGA
1 GATG-CATGTCCCAGACATGGTCTTACACTGCAC--TCATCTCGTTGC-CGATGCATGTCCCAGA
* *
86047340 CATGTCTTACACCGGCTTA-T-GTCTTGAGGCC
62 CATGTCTTACACCAGC--ACTCGTCTCGAGGCC
*
86047371 GATGCATGTCCCAGACAT-GTCTTACATTAGCACTCATCTCGTTGCCGATGCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGGTCTTACACT-GCACTCATCTCGTTGCCGATGCATGTCCCAGACAT
* *
86047435 GTCTTACACTAGCACTCGTCTCGATGCC
65 GTCTTACACCAGCACTCGTCTCGAGGCC
* * * *
86047463 GATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGATGCATGTCCCAGAC
1 GATGC-ATGTCCCAGACATGGTCTTACACT-GCACTCAT-CTCGTTGCCGATGCATGTCCCAGAC
86047527 ATGTCTTACAC
63 ATGTCTTACAC
86047538 TAGCTCACAA
Statistics
Matches: 146, Mismatches: 13, Indels: 16
0.83 0.07 0.09
Matches are distributed among these distances:
90 1 0.01
91 1 0.01
92 61 0.42
93 29 0.20
94 53 0.36
95 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGGTCTTACACTGCACTCATCTCGTTGCCGATGCATGTCCCAGACATG
TCTTACACCAGCACTCGTCTCGAGGCC
Found at i:86051006 original size:27 final size:27
Alignment explanation
Indices: 86050976--86051033 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
86050966 TATGTCGGTC
* * * *
86050976 ATTTTACGCTACAAGGGTATTTTAGTA
1 ATTTTACACTACAAGAGTATTTCAATA
86051003 ATTTTACACTACAAGAGTATTTCAATA
1 ATTTTACACTACAAGAGTATTTCAATA
86051030 ATTT
1 ATTT
86051034 ACAAATCAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTCAATA
Found at i:86051066 original size:27 final size:27
Alignment explanation
Indices: 86051031--86051268 Score: 215
Period size: 27 Copynumber: 9.1 Consensus size: 27
86051021 ATTTCAATAA
*
86051031 TTTACAAATC-AGGGGTGTTTTGGTAAT
1 TTTACAAATCGA-GGGTATTTTGGTAAT
* *
86051058 TTTATAAATCGAGAGTATTTTGGTAAT
1 TTTACAAATCGAGGGTATTTTGGTAAT
*
86051085 TTTACAAATCGAGGGTATTTCGGTAAT
1 TTTACAAATCGAGGGTATTTTGGTAAT
* * * *
86051112 TTTATAAATCGAGGTTGTTTTAGTAAT
1 TTTACAAATCGAGGGTATTTTGGTAAT
*
86051139 TTTACAAATCG-GAGGTATTTTAGTAAT
1 TTTACAAATCGAG-GGTATTTTGGTAAT
* * **
86051166 TTTATAAATTGAGGGTATTTCAGTAA-
1 TTTACAAATCGAGGGTATTTTGGTAAT
* *
86051192 TTT----A--GAGGGTATTTCGATAAT
1 TTTACAAATCGAGGGTATTTTGGTAAT
* * *
86051213 TTTACAAATCGGGGGTATTTCGTTAAT
1 TTTACAAATCGAGGGTATTTTGGTAAT
**
86051240 TTTACAAATCGAGGGTATTTAAGTAAT
1 TTTACAAATCGAGGGTATTTTGGTAAT
86051267 TT
1 TT
86051269 CTCTTTATTA
Statistics
Matches: 176, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
20 14 0.08
21 3 0.02
22 1 0.01
25 1 0.01
26 4 0.02
27 151 0.86
28 2 0.01
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
TTTACAAATCGAGGGTATTTTGGTAAT
Found at i:86051113 original size:54 final size:54
Alignment explanation
Indices: 86051019--86051268 Score: 243
Period size: 54 Copynumber: 4.8 Consensus size: 54
86051009 CACTACAAGA
* * * *
86051019 GTATTTCAATAA-TTTACAAATC-AGGGGTGTTTTGGTAATTTTATAAATCGAGA
1 GTATTTCAGTAATTTTACAAATCGA-GGGTATTTCGGTAATTTTATAAATCGAGG
**
86051072 GTATTTTGGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGG
* * * ** *
86051126 TTGTTTTAGTAATTTTACAAATCG-GAGGTATTTTAGTAATTTTATAAATTGAGG
1 GTATTTCAGTAATTTTACAAATCGAG-GGTATTTCGGTAATTTTATAAATCGAGG
* * *
86051180 GTATTTCAGTAA-TTT----A--GAGGGTATTTCGATAATTTTACAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGG
**
86051227 GTATTTC-GTTAATTTTACAAATCGAGGGTATTTAAGTAATTT
1 GTATTTCAG-TAATTTTACAAATCGAGGGTATTTCGGTAATTT
86051269 CTCTTTATTA
Statistics
Matches: 161, Mismatches: 24, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
46 1 0.01
47 33 0.20
48 4 0.02
49 1 0.01
52 1 0.01
53 13 0.08
54 107 0.66
55 1 0.01
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (54 bp):
GTATTTCAGTAATTTTACAAATCGAGGGTATTTCGGTAATTTTATAAATCGAGG
Found at i:86051629 original size:28 final size:28
Alignment explanation
Indices: 86051589--86051643 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
86051579 CTCTTTAGGC
* * *
86051589 CCAATCTCGTTCACGTGGCCCATCAGGG
1 CCAATCACATTCACATGGCCCATCAGGG
*
86051617 CCAATCACATTCATATGGCCCATCAGG
1 CCAATCACATTCACATGGCCCATCAGG
86051644 CAACTACTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.35, G:0.20, T:0.22
Consensus pattern (28 bp):
CCAATCACATTCACATGGCCCATCAGGG
Found at i:86055687 original size:45 final size:44
Alignment explanation
Indices: 86055620--86055788 Score: 182
Period size: 45 Copynumber: 3.8 Consensus size: 44
86055610 AACCCGCCCC
*
86055620 TAAGTGAACTC-GACTCAACTCAACGAGCTCGGGCGTTCGATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCGATCCA
* * * *
86055664 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--GCTTCGATCCA
* * *
86055710 TTTCA-CGAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-TTCG-ATCCA
86055756 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
86055789 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
44 14 0.14
45 48 0.47
46 10 0.10
47 28 0.27
48 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCTTCGATCCA
Found at i:86055735 original size:92 final size:91
Alignment explanation
Indices: 86055625--86055792 Score: 284
Period size: 92 Copynumber: 1.8 Consensus size: 91
86055615 GCCCCTAAGT
* *
86055625 GAACTCGACTCAACTCAACGAGCTCGGGCGTTCG-ATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGACTCAACTCAACGAGCTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
86055689 GAGTTCGGATGCCTAGTTACATTTCAC
65 GAGTTCGGATGCCTAGTTACATTTCAC
*
86055716 GAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTC-GACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
86055781 GAGTTCGGATGC
65 GAGTTCGGATGC
86055793 TCAACCATCC
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
91 12 0.17
92 60 0.83
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (91 bp):
GAACTCGACTCAACTCAACGAGCTCGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATTTCAC
Found at i:86056245 original size:30 final size:29
Alignment explanation
Indices: 86056211--86056269 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
86056201 ATTTAATACG
86056211 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTT-CCCCTA
* * *
86056241 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTCCCCTA
86056270 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTA
Found at i:86063305 original size:93 final size:93
Alignment explanation
Indices: 86063190--86063360 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
86063180 GCCCCTAAGT
*
86063190 GAACTCGGACTCAACTCAACGAGCTCTGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86063254 AAGAGTTCGGATGCCTAGTTACATTTCAC
65 AAGAGTTCGGATGCCTAGTTACATTTCAC
* *
86063283 GAACTCGGATTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
86063348 CGAGTTCGGATGC
66 AGAGTTCGGATGC
86063361 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
AGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:86063355 original size:46 final size:46
Alignment explanation
Indices: 86063185--86063357 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
86063175 AACCCGCCCC
* *
86063185 TAAGTGAACTCGGACTCAACTCAACGAGCTCTGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCA
* * *
86063231 TAAGTGAACTCGGACTCAACTCAAAGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
86063279 TCA-CGAACTCGGATTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
86063324 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86063358 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 57 0.55
47 27 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:86071155 original size:26 final size:26
Alignment explanation
Indices: 86071092--86071182 Score: 119
Period size: 27 Copynumber: 3.4 Consensus size: 26
86071082 GGGCAAAGTA
* **
86071092 ATAATTTTACCCTACAAGGACATGTCG
1 ATAATTTTACACTACAAGGGTAT-TCG
* *
86071119 GTCATTTTACACTACAAGGGTATTCG
1 ATAATTTTACACTACAAGGGTATTCG
86071145 ATAATTTTACACTACAAGGGTATTTCG
1 ATAATTTTACACTACAAGGGTA-TTCG
86071172 ATAATTTTACA
1 ATAATTTTACA
86071183 AATCAGGAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.41
27 33 0.59
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (26 bp):
ATAATTTTACACTACAAGGGTATTCG
Found at i:86071197 original size:27 final size:26
Alignment explanation
Indices: 86071135--86071526 Score: 309
Period size: 27 Copynumber: 14.7 Consensus size: 26
86071125 TTACACTACA
*
86071135 AGGGTA-TTCGATAATTTTAC-ACTAC
1 AGGGTATTTCGATAATTTTACAAAT-C
86071160 AAGGGTATTTCGATAATTTTACAAATC
1 -AGGGTATTTCGATAATTTTACAAATC
* * *
86071187 AGGAGTGTTTCGGTAATTTTACAAATTA
1 AGG-GTATTTCGATAATTTTACAAA-TC
* * *
86071215 AGGGTATTTTGGTAATTTTATAAATC
1 AGGGTATTTCGATAATTTTACAAATC
* *
86071241 GGGGGTATTTCAATAATTTTACAAATC
1 -AGGGTATTTCGATAATTTTACAAATC
* *
86071268 TAGGGTATTTTGATAATTTTATAAATC
1 -AGGGTATTTCGATAATTTTACAAATC
* * * *
86071295 AAAGGTGTTTC-AGTAATTTTAAAAATTG
1 -AGGGTATTTCGA-TAATTTTACAAA-TC
* *
86071323 AGGGTATTTCGATAATTTTAAAAATTG
1 AGGGTATTTCGATAATTTTACAAA-TC
*
86071350 AGGGTATTTC-AGTAATTTCA-AAATC
1 AGGGTATTTCGA-TAATTTTACAAATC
86071375 GAGGGTATTTC-AGTAATTTTACAAATC
1 -AGGGTATTTCGA-TAATTTTACAAATC
* * *
86071402 GATGGTATTTCGGTAATTTTACAAATTG
1 -AGGGTATTTCGATAATTTTACAAA-TC
*
86071430 AGGGTATTTCG-TAATTTCAC-AATC
1 AGGGTATTTCGATAATTTTACAAATC
86071454 GAGGGTATTTC-AGTAATTTTACAAATC
1 -AGGGTATTTCGA-TAATTTTACAAATC
* * *
86071481 TGGGGTATTTCGGTAATTTTACAAATTG
1 -AGGGTATTTCGATAATTTTACAAA-TC
86071509 AGGGTATTTC-AGTAATTT
1 AGGGTATTTCGA-TAATTT
86071527 CCTTTTATTA
Statistics
Matches: 304, Mismatches: 42, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
24 1 0.00
25 13 0.04
26 50 0.16
27 230 0.76
28 10 0.03
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (26 bp):
AGGGTATTTCGATAATTTTACAAATC
Found at i:86071218 original size:54 final size:53
Alignment explanation
Indices: 86071161--86071526 Score: 402
Period size: 54 Copynumber: 6.8 Consensus size: 53
86071151 TTACACTACA
* * *
86071161 AGGGTATTTCGATAATTTTACAAATCAGGAGTGTTTCGGTAATTTTACAAATTA
1 AGGGTATTTCGATAATTTTACAAATCAGG-GTATTTCAGTAATTTTACAAATTG
* * * * *
86071215 AGGGTATTTTGGTAATTTTATAAATCGGGGGTATTTCAATAATTTTACAAATCT-
1 AGGGTATTTCGATAATTTTACAAATC-AGGGTATTTCAGTAATTTTACAAAT-TG
* * * * *
86071269 AGGGTATTTTGATAATTTTATAAATCAAAGGTGTTTCAGTAATTTTAAAAATTG
1 AGGGTATTTCGATAATTTTACAAATC-AGGGTATTTCAGTAATTTTACAAATTG
* * * *
86071323 AGGGTATTTCGATAATTTTAAAAATTGAGGGTATTTCAGTAATTTCA-AAATCG
1 AGGGTATTTCGATAATTTTACAAA-TCAGGGTATTTCAGTAATTTTACAAATTG
* *
86071376 AGGGTATTTC-AGTAATTTTACAAATCGATGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCGA-TAATTTTACAAATC-AGGGTATTTCAGTAATTTTACAAATTG
*
86071430 AGGGTATTTCG-TAATTTCAC-AATCGAGGGTATTTCAGTAATTTTACAAATCTG
1 AGGGTATTTCGATAATTTTACAAATC-AGGGTATTTCAGTAATTTTACAAAT-TG
* *
86071483 -GGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTT
1 AGGGTATTTCGATAATTTTACAAA-TCAGGGTATTTCAGTAATTT
86071527 CCTTTTATTA
Statistics
Matches: 268, Mismatches: 32, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
52 40 0.15
53 62 0.23
54 161 0.60
55 5 0.02
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (53 bp):
AGGGTATTTCGATAATTTTACAAATCAGGGTATTTCAGTAATTTTACAAATTG
Found at i:86071492 original size:79 final size:81
Alignment explanation
Indices: 86071161--86071527 Score: 435
Period size: 81 Copynumber: 4.6 Consensus size: 81
86071151 TTACACTACA
* * * * * *
86071161 AGGGTATTTCGATAATTTTACAAA-TCAGGAGTGTTTCGGTAATTTTACAAATTAAGGGTATTTT
1 AGGGTATTTCGATAATTTTACAAATTGAGG-GTATTTCAGTAATTTCA-AAATCAAGGGTATTTC
* *
86071225 GGTAATTTTATAAATC-G
64 AGTAATTTTACAAATCTG
* * * * * *
86071242 GGGGTATTTCAATAATTTTACAAATCT-AGGGTATTT-TGATAATTTTATAAATCAAAGGTGTTT
1 AGGGTATTTCGATAATTTTACAAAT-TGAGGGTATTTCAG-TAATTTCA-AAATCAAGGGTATTT
*
86071305 CAGTAATTTTAAAAAT-TG
63 CAGTAATTTTACAAATCTG
* *
86071323 AGGGTATTTCGATAATTTTAAAAATTGAGGGTATTTCAGTAATTTCAAAATCGAGGGTATTTCAG
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTCAAAATCAAGGGTATTTCAG
86071388 TAATTTTACAAATC-G
66 TAATTTTACAAATCTG
* * * *
86071403 ATGGTATTTCGGTAATTTTACAAATTGAGGGTATTTC-GTAATTTCACAATCGAGGGTATTTCAG
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTCAAAATCAAGGGTATTTCAG
86071467 TAATTTTACAAATCTG
66 TAATTTTACAAATCTG
*
86071483 -GGGTATTTCGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTC
1 AGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTC
86071528 CTTTTATTAT
Statistics
Matches: 252, Mismatches: 25, Indels: 19
0.85 0.08 0.06
Matches are distributed among these distances:
79 75 0.30
80 73 0.29
81 99 0.39
82 4 0.02
83 1 0.00
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTCAAAATCAAGGGTATTTCAG
TAATTTTACAAATCTG
Found at i:86071884 original size:28 final size:28
Alignment explanation
Indices: 86071842--86071905 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 28
86071832 TGGCCCCTTT
*
86071842 AGGCCCAATCTCATTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* *
86071870 AGGCCTAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
86071898 AGGCCCAA
1 AGGCCCAA
86071906 CTACTTCCCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.28, C:0.36, G:0.16, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:86075528 original size:26 final size:26
Alignment explanation
Indices: 86075511--86075560 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
86075501 TTTGTGTCGG
*
86075511 TGTATATTTAGCATGCTTTGAGCCAC
1 TGTATATTTAGCAGGCTTTGAGCCAC
86075537 TGTATATTTAGCAGGCTTTGAGCC
1 TGTATATTTAGCAGGCTTTGAGCC
86075561 GATGTTTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.38
Consensus pattern (26 bp):
TGTATATTTAGCAGGCTTTGAGCCAC
Found at i:86078610 original size:36 final size:35
Alignment explanation
Indices: 86078570--86078645 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 35
86078560 TGATAACTGT
* * *
86078570 TGTGAAAG-AGAATATGTGGGTATGTTATTCATTCCA
1 TGTGAAAGTA-AATATGTGAGTATGTT-TCCATACCA
*
86078606 TGTGACAGTAAATATGTGAGTATGTTTCCATACCA
1 TGTGAAAGTAAATATGTGAGTATGTTTCCATACCA
86078641 TGTGA
1 TGTGA
86078646 TAGTTATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
35 12 0.34
36 22 0.63
37 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.24, T:0.36
Consensus pattern (35 bp):
TGTGAAAGTAAATATGTGAGTATGTTTCCATACCA
Found at i:86080313 original size:20 final size:20
Alignment explanation
Indices: 86080288--86080327 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
86080278 GATAAAAACA
86080288 AATGAAATAAAACAAACTAT
1 AATGAAATAAAACAAACTAT
86080308 AATGAAATAAAACAAACTAT
1 AATGAAATAAAACAAACTAT
86080328 CATCTTCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.10, G:0.05, T:0.20
Consensus pattern (20 bp):
AATGAAATAAAACAAACTAT
Found at i:86081316 original size:25 final size:25
Alignment explanation
Indices: 86081265--86081316 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
86081255 CGACCCACAA
* * *
86081265 CTCGTGTGAGCATACCAATTTATAG
1 CTCGTGAGAGCATACCAATCTACAG
* *
86081290 CTCGTGAGAGCATATCGATCTACAG
1 CTCGTGAGAGCATACCAATCTACAG
86081315 CT
1 CT
86081317 TGAGTGAGCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
CTCGTGAGAGCATACCAATCTACAG
Found at i:86083352 original size:43 final size:43
Alignment explanation
Indices: 86083271--86083353 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
86083261 GAGATATGTG
*
86083271 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATTATGGATGCAA
1 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATGCAA
* * * *
86083314 GCATTCGAGCTCGTTGAGAGGTCCGAGTTCATGGTGGATG
1 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATG
86083354 TGATTCATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGAGGTCCAAGTTCATGATGGATGCAA
Found at i:86084671 original size:42 final size:41
Alignment explanation
Indices: 86084600--86084733 Score: 169
Period size: 42 Copynumber: 3.2 Consensus size: 41
86084590 GTGTGTCTCA
* * * *
86084600 GCCGTGTAGAGGACACGACCTAGCCCACGGGTGTTTGCCTTG
1 GCCGTGTGGAGGACACG-CCTAGCGCACGGGCGTGTGCCTTG
*
86084642 GCTGTGTGGAGGACACAGCCTAGCGCACGGGCGTGTGCCTTG
1 GCCGTGTGGAGGACAC-GCCTAGCGCACGGGCGTGTGCCTTG
* *
86084684 GCCATGTGGAGGACACGGCCTAGCGCACAGGCGTGTGCCTTG
1 GCCGTGTGGAGGACAC-GCCTAGCGCACGGGCGTGTGCCTTG
*
86084726 GCCATGTG
1 GCCGTGTG
86084734 CCCCTAAATG
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 81 0.99
43 1 0.01
ACGTcount: A:0.16, C:0.28, G:0.37, T:0.19
Consensus pattern (41 bp):
GCCGTGTGGAGGACACGCCTAGCGCACGGGCGTGTGCCTTG
Found at i:86086371 original size:29 final size:29
Alignment explanation
Indices: 86086329--86086623 Score: 288
Period size: 29 Copynumber: 10.0 Consensus size: 29
86086319 AACACTATCG
*
86086329 ACTATGAAAAGGGATGGTAACGACCATCC
1 ACTATGAAAAGGGATGGTAACGACCATCA
* * *
86086358 ACTATGAAAAGGGATAGT-TCGACTATCA
1 ACTATGAAAAGGGATGGTAACGACCATCA
* *** *
86086386 ACTATGAAAAGGGATAGTTTTGACCATCG
1 ACTATGAAAAGGGATGGTAACGACCATCA
*
86086415 ACTATGAAAAGGGATGGTGACGACCATCA
1 ACTATGAAAAGGGATGGTAACGACCATCA
86086444 ACTATGAAAAGGGATGGTAATGACGACCATCA
1 ACTATGAAAAGGGATGGT-A--ACGACCATCA
86086476 ACTATGAAAAGGGATGGTAGTGACGACCATCA
1 ACTATGAAAAGGGATGGTA---ACGACCATCA
* * *
86086508 ACTATGAAAAGTGATGGTGATGACCATCGA
1 ACTATGAAAAGGGATGGTAACGACCATC-A
* ** *
86086538 A-TATGAAAAGGGATAGTTTCGACTATCA
1 ACTATGAAAAGGGATGGTAACGACCATCA
* * *
86086566 ACTATGAAAAGGGATGGTGACAACCATCG
1 ACTATGAAAAGGGATGGTAACGACCATCA
* * **
86086595 ATTAAAGAAAAGGGATGGTTTCGACCATC
1 ACT-ATGAAAAGGGATGGTAACGACCATC
86086624 GTTAGCACAC
Statistics
Matches: 225, Mismatches: 33, Indels: 15
0.82 0.12 0.05
Matches are distributed among these distances:
28 27 0.12
29 117 0.52
30 23 0.10
31 1 0.00
32 57 0.25
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (29 bp):
ACTATGAAAAGGGATGGTAACGACCATCA
Found at i:86086517 original size:122 final size:115
Alignment explanation
Indices: 86086329--86086593 Score: 341
Period size: 122 Copynumber: 2.2 Consensus size: 115
86086319 AACACTATCG
* * *
86086329 ACTATGAAAAGGGATGGTAACGACCATCCACTATGAAAAGGGATAGTTCGACTATCAACTATGAA
1 ACTATGAAAAGGGATGGTAACGACCATCAACTATGAAAAGGGATAGTACGACCATCAACTATGAA
** * *
86086394 AAGGGATAGTTTTGACCATCGACTATGAAAAGGGATGGTGACGACCATCA
66 AAGGGATAGTGATGACCATCGAATATGAAAAGGGATAGTGACGACCATCA
86086444 ACTATGAAAAGGGATGGTAATGACGACCATCAACTATGAAAAGGGATGGTAGTGACGACCATCAA
1 ACTATGAAAAGGGATGGT-A--ACGACCATCAACTATGAAAAGGGA---TAGT-ACGACCATCAA
* * ** *
86086509 CTATGAAAAGTGATGGTGATGACCATCGAATATGAAAAGGGATAGTTTCGACTATCA
59 CTATGAAAAGGGATAGTGATGACCATCGAATATGAAAAGGGATAGTGACGACCATCA
* *
86086566 ACTATGAAAAGGGATGGTGACAACCATC
1 ACTATGAAAAGGGATGGTAACGACCATC
86086594 GATTAAAGAA
Statistics
Matches: 129, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
115 18 0.14
116 1 0.01
118 23 0.18
119 8 0.06
121 4 0.03
122 75 0.58
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (115 bp):
ACTATGAAAAGGGATGGTAACGACCATCAACTATGAAAAGGGATAGTACGACCATCAACTATGAA
AAGGGATAGTGATGACCATCGAATATGAAAAGGGATAGTGACGACCATCA
Found at i:86088132 original size:15 final size:16
Alignment explanation
Indices: 86088108--86088150 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
86088098 ATTAACGGAT
*
86088108 AAAAACGTAAATTAA-
1 AAAAATGTAAATTAAG
*
86088123 AAAAATGTAACTTAAG
1 AAAAATGTAAATTAAG
86088139 AAAAATGATAAA
1 AAAAATG-TAAA
86088151 ATAATACTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 13 0.57
16 7 0.30
17 3 0.13
ACGTcount: A:0.65, C:0.05, G:0.09, T:0.21
Consensus pattern (16 bp):
AAAAATGTAAATTAAG
Found at i:86090259 original size:35 final size:35
Alignment explanation
Indices: 86090220--86090298 Score: 104
Period size: 35 Copynumber: 2.3 Consensus size: 35
86090210 TATTAAGCTT
* * *
86090220 GTATATTCGACTACTTCTGCAGTTATATTGAACTA
1 GTATATTCGACTACATATGAAGTTATATTGAACTA
* * *
86090255 GTATATTCGATTACATATGAAGTTATATTGAATTT
1 GTATATTCGACTACATATGAAGTTATATTGAACTA
86090290 GTATATTCG
1 GTATATTCG
86090299 GCCATATGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.43
Consensus pattern (35 bp):
GTATATTCGACTACATATGAAGTTATATTGAACTA
Found at i:86090319 original size:70 final size:70
Alignment explanation
Indices: 86090245--86090381 Score: 159
Period size: 70 Copynumber: 2.0 Consensus size: 70
86090235 TCTGCAGTTA
* * * * * *
86090245 TATTGAACTAGTATATTCGATTACATATGAAG-TTATATTGAATTTGTATATTCGGCCATATGAG
1 TATTGAACTAGAACATTAGATTACATATGAAGATAAT-TTGAACTTATATATTCGGCCATATGAG
86090309 ATATTT
65 ATATTT
* * * * *
86090315 TATTGAACTTGAACATTAGGTTACATGTGATGATAATTTGAACTTATATATTCTGCCATATGAGA
1 TATTGAACTAGAACATTAGATTACATATGAAGATAATTTGAACTTATATATTCGGCCATATGAGA
86090380 TA
66 TA
86090382 ACATAATAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
70 52 0.95
71 3 0.05
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (70 bp):
TATTGAACTAGAACATTAGATTACATATGAAGATAATTTGAACTTATATATTCGGCCATATGAGA
TATTT
Found at i:86091940 original size:40 final size:40
Alignment explanation
Indices: 86091882--86092044 Score: 220
Period size: 40 Copynumber: 4.1 Consensus size: 40
86091872 AATTATTGAA
* * *
86091882 TGATTGCACAT-TCATGCCCCTGTTTGTGCTTCGGTACCCC
1 TGATTGCACATAT-GTGCCCCTATTTGTACTTCGGTACCCC
* *
86091922 TGATTGCACATATGTGCCCCTATTTGTACTTTGGTTCCCC
1 TGATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
* * *
86091962 TGTTTGCACATATGTGCCCCTGTTTGTACTTCGGTACCCT
1 TGATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
* *
86092002 TGATTGCACATACGTGCCCCTATTTGTACTTAGGTACCCC
1 TGATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
86092042 TGA
1 TGA
86092045 ACGCATTTAT
Statistics
Matches: 107, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 106 0.99
41 1 0.01
ACGTcount: A:0.15, C:0.29, G:0.19, T:0.37
Consensus pattern (40 bp):
TGATTGCACATATGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:86091941 original size:20 final size:20
Alignment explanation
Indices: 86091918--86092022 Score: 70
Period size: 20 Copynumber: 5.2 Consensus size: 20
86091908 TGCTTCGGTA
86091918 CCCCTGATTGCACATATGTG
1 CCCCTGATTGCACATATGTG
* * *
86091938 CCCCT-ATTTGTAC-TTTGGTT
1 CCCCTGA-TTGCACATAT-GTG
*
86091958 CCCCTGTTTGCACATATGTG
1 CCCCTGATTGCACATATGTG
* * * ** *
86091978 CCCCTGTTTGTACTTCGGTA
1 CCCCTGATTGCACATATGTG
* *
86091998 CCCTTGATTGCACATACGTG
1 CCCCTGATTGCACATATGTG
86092018 CCCCT
1 CCCCT
86092023 ATTTGTACTT
Statistics
Matches: 61, Mismatches: 20, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
19 3 0.05
20 56 0.92
21 2 0.03
ACGTcount: A:0.14, C:0.31, G:0.18, T:0.36
Consensus pattern (20 bp):
CCCCTGATTGCACATATGTG
Found at i:86092019 original size:80 final size:80
Alignment explanation
Indices: 86091896--86092043 Score: 251
Period size: 80 Copynumber: 1.9 Consensus size: 80
86091886 TGCACATTCA
* * * *
86091896 TGCCCCTGTTTGTGCTTCGGTACCCCTGATTGCACATATGTGCCCCTATTTGTACTTTGGTTCCC
1 TGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
86091961 CTGTTTGCACATATG
66 CTGTTTGCACATATG
*
86091976 TGCCCCTGTTTGTACTTCGGTACCCTTGATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
1 TGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
86092041 CTG
66 CTG
86092044 AACGCATTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 63 1.00
ACGTcount: A:0.14, C:0.30, G:0.20, T:0.37
Consensus pattern (80 bp):
TGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACGTGCCCCTATTTGTACTTAGGTACCC
CTGTTTGCACATATG
Found at i:86094400 original size:29 final size:29
Alignment explanation
Indices: 86094365--86094442 Score: 129
Period size: 29 Copynumber: 2.7 Consensus size: 29
86094355 CATATTTTAT
*
86094365 TGATTTGGCTTCGGGCCATGCATATCGAA
1 TGATTTGGCTTCGAGCCATGCATATCGAA
86094394 TGATTTGGCTTCGAGCCATGCATATCGAA
1 TGATTTGGCTTCGAGCCATGCATATCGAA
* *
86094423 TGATTTGGCTTTGAGACATG
1 TGATTTGGCTTCGAGCCATG
86094443 ATAATAGTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 46 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (29 bp):
TGATTTGGCTTCGAGCCATGCATATCGAA
Found at i:86100742 original size:93 final size:93
Alignment explanation
Indices: 86100583--86100766 Score: 307
Period size: 93 Copynumber: 2.0 Consensus size: 93
86100573 ACACGGGGTT
* *
86100583 GAAGAAGCTACGTGGGAACCCGACGATGCTATGAGAAAGCAATACCTGGACCTATTCACTGATAA
1 GAAGAAGCTACATGGGAACCCGACGATGCAATGAGAAAGCAATACCTGGACCTATTCACTGATAA
*
86100648 GATTTTT-TGAGGATGAAAATCCCTAAGG
66 GATTTTTCAG-GGATGAAAATCCCTAAGG
* *
86100676 GAAGAAGCTACATGGGAACCCGATGATGCAATGAGAAAGCAATACCTGGACCTATTCACTGGTAA
1 GAAGAAGCTACATGGGAACCCGACGATGCAATGAGAAAGCAATACCTGGACCTATTCACTGATAA
86100741 GATTTTTCAGGGATGAAAATCCCTAA
66 GATTTTTCAGGGATGAAAATCCCTAA
86100767 AGGGGGAGAG
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
93 84 0.99
94 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.22
Consensus pattern (93 bp):
GAAGAAGCTACATGGGAACCCGACGATGCAATGAGAAAGCAATACCTGGACCTATTCACTGATAA
GATTTTTCAGGGATGAAAATCCCTAAGG
Found at i:86115231 original size:28 final size:28
Alignment explanation
Indices: 86115185--86115287 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
86115175 TGGCCCCTTT
* *
86115185 AGGCCTAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
86115213 GGGTCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
86115241 AGGCCCAATCACTTTCATGTGTCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
86115269 AGGCCCAATCACATTCATA
1 AGGCCCAATCACATTCATA
86115288 GTCATGCAAT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:86119208 original size:23 final size:23
Alignment explanation
Indices: 86119181--86119352 Score: 159
Period size: 23 Copynumber: 7.4 Consensus size: 23
86119171 TCATCTCATA
*
86119181 AGAGCTTACTATTTCAGCTCATT
1 AGAGCTTACTATTTCAGCTCAAT
* * * *
86119204 GGAGCTTACCA-TTCAACTCGAT
1 AGAGCTTACTATTTCAGCTCAAT
* *
86119226 AGAGCTTATTGTTT-AGCTCAAT
1 AGAGCTTACTATTTCAGCTCAAT
*
86119248 AGAGCTTACCATTTCAGCTCAAT
1 AGAGCTTACTATTTCAGCTCAAT
* *
86119271 AGAGCTTACTGTTTTAGCTCAAT
1 AGAGCTTACTATTTCAGCTCAAT
* ** *
86119294 AGAGCTTACCAACTCAGCTCATT
1 AGAGCTTACTATTTCAGCTCAAT
* *
86119317 AGAGCTTACTATTCATTAGCTCAAG
1 AGAGCTTACTATT--TCAGCTCAAT
86119342 AGGAGCTTACT
1 A-GAGCTTACT
86119353 GATCATGGCT
Statistics
Matches: 115, Mismatches: 29, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
22 32 0.28
23 66 0.57
25 8 0.07
26 9 0.08
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.33
Consensus pattern (23 bp):
AGAGCTTACTATTTCAGCTCAAT
Found at i:86119297 original size:46 final size:45
Alignment explanation
Indices: 86119181--86119351 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 45
86119171 TCATCTCATA
* * * * *
86119181 AGAGCTTACTATTTCAGCTCATTGGAGCTTACCATTCAACTCGAT
1 AGAGCTTACTATTTTAGCTCAATAGAGCTTACCATTCAGCTCAAT
86119226 AGAGCTTA-T-TGTTTAGCTCAATAGAGCTTACCATTTCAGCTCAAT
1 AGAGCTTACTAT-TTTAGCTCAATAGAGCTTACCA-TTCAGCTCAAT
* * *
86119271 AGAGCTTACTGTTTTAGCTCAATAGAGCTTACCAACTCAGCTCATT
1 AGAGCTTACTATTTTAGCTCAATAGAGCTTACC-ATTCAGCTCAAT
*
86119317 AGAGCTTACTATTCATTAGCTCAAGAGGAGCTTAC
1 AGAGCTTACTATT--TTAGCTCAATA-GAGCTTAC
86119352 TGATCATGGC
Statistics
Matches: 109, Mismatches: 9, Indels: 12
0.84 0.07 0.09
Matches are distributed among these distances:
43 1 0.01
44 20 0.18
45 25 0.23
46 43 0.39
47 2 0.02
48 10 0.09
49 8 0.07
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (45 bp):
AGAGCTTACTATTTTAGCTCAATAGAGCTTACCATTCAGCTCAAT
Found at i:86121561 original size:39 final size:40
Alignment explanation
Indices: 86121461--86121651 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
86121451 TTGAATGATG
* * * *
86121461 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAT
* * *
86121500 ATCCGGACTAA-TATCCGAAGGCATTTGTACGAGATACTAAT
1 -TCCGGGCTAAGT-CCCGAAGGCATTTGTACGAGTTACTAAT
* *
86121541 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
86121580 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
* * *
86121619 AACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTACGAG
86121652 GAGCTATATC
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 35 0.28
40 81 0.65
41 8 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAT
Found at i:86121667 original size:79 final size:79
Alignment explanation
Indices: 86121514--86121678 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
86121504 GGACTAATAT
* ** *
86121514 CCGAAGGCATTTGTACGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
86121579 ATCCAGGTTAAGTC
66 ATCCAGGTTAAATC
* * *
86121593 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
* *
86121656 TATATCC-GGTTAAATT
63 TAAATCCAGGTTAAATC
86121672 CCGAAGG
1 CCGAAGG
86121679 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCAGGTTAAATC
Found at i:86132729 original size:13 final size:13
Alignment explanation
Indices: 86132711--86132738 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
86132701 ACATATTATA
86132711 AATATTTTGTGTT
1 AATATTTTGTGTT
86132724 AATATTTTGTGTT
1 AATATTTTGTGTT
86132737 AA
1 AA
86132739 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:86133524 original size:12 final size:12
Alignment explanation
Indices: 86133503--86133545 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
86133493 ACCACATAAG
86133503 TATATATATACT
1 TATATATATACT
* *
86133515 TATATGTATAAGT
1 TATATATAT-ACT
86133528 ATATATATATACT
1 -TATATATATACT
86133541 TATAT
1 TATAT
86133546 GTATGTTAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 13 0.52
13 4 0.16
14 8 0.32
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.49
Consensus pattern (12 bp):
TATATATATACT
Found at i:86134193 original size:40 final size:39
Alignment explanation
Indices: 86134145--86134390 Score: 334
Period size: 40 Copynumber: 6.2 Consensus size: 39
86134135 GGACTAAGAT
86134145 CCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGTC
* *
86134185 CCGAAGGCATTTGTGCTAGTTACTTTAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGG-CTAAG-TC
* *
86134225 CCAAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGG-CTAAG-TC
*
86134265 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGTC
86134305 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGTC
* * *
86134345 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGCTAAGTC
*
86134384 CTGAAGG
1 CCGAAGG
86134391 TACTTGGGTT
Statistics
Matches: 190, Mismatches: 12, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
39 17 0.09
40 170 0.89
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGCTAAGTC
Found at i:86134269 original size:80 final size:79
Alignment explanation
Indices: 86134129--86134390 Score: 370
Period size: 80 Copynumber: 3.3 Consensus size: 79
86134119 ATGTGTTATG
86134129 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGTCCCGAAGGCA
86134194 TTTGTGCTAGTTACT
65 TTTGTGCTAGTTACT
* * *
86134209 TTAACCGGACTAAGATCCAAAGGCATTTGTGCTAGTTACTATAACCGGACTAAGAT-CCGAAGGC
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGG-CTAAG-TCCCGAAGGC
86134273 ATTTGTGCTAGTTACT
64 ATTTGTGCTAGTTACT
* *
86134289 ATATCCGGGCTAA-ATCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATATCC-GGCTAAGTCCCGAAGGC
* *
86134353 ATTTGTGCGAGTTGCT
64 ATTTGTGCTAGTTACT
*
86134369 ATATCCGG-CTAA-ATCCTGAAGG
1 ATAACCGGACTAAGATCC-GAAGG
86134391 TACTTGGGTT
Statistics
Matches: 166, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
78 2 0.01
79 16 0.10
80 145 0.87
81 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (79 bp):
ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGCTAAGTCCCGAAGGCAT
TTGTGCTAGTTACT
Found at i:86134342 original size:120 final size:120
Alignment explanation
Indices: 86134129--86134390 Score: 404
Period size: 120 Copynumber: 2.2 Consensus size: 120
86134119 ATGTGTTATG
*
86134129 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAGTCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAATCCCGAAGGCA
* *
86134194 TTTGTGCTAGTTACTTTAACCGGACTAAGAT-CCAAAGGCATTTGTGCTAGTTACT
66 TTTGTGCTAGTTACTATAACCGGACTAAG-TCCCAAAGGCATTTGTGCGAGTTACT
*
86134249 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAATCCCGAAGGCA
1 ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAATCCCGAAGGCA
* * * *
86134314 TTTGTGCTAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCT
66 TTTGTGCTAGTTACTATAACCGGACTAAGTCCCAAAGGCATTTGTGCGAGTTACT
*
86134369 ATATCCGG-CTAA-ATCCTGAAGG
1 ATAACCGGACTAAGATCC-GAAGG
86134391 TACTTGGGTT
Statistics
Matches: 131, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
118 4 0.03
119 10 0.08
120 117 0.89
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (120 bp):
ATAACCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACTATATCCAGGCTAAATCCCGAAGGCA
TTTGTGCTAGTTACTATAACCGGACTAAGTCCCAAAGGCATTTGTGCGAGTTACT
Found at i:86150567 original size:23 final size:23
Alignment explanation
Indices: 86150541--86150598 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
86150531 ATCACAGTGT
*
86150541 AGCTGCTAATAGTAATGCAGCAA
1 AGCTGCTAATAGAAATGCAGCAA
*
86150564 AGCTGCTAATAAAAATGCAGCAA
1 AGCTGCTAATAGAAATGCAGCAA
86150587 AGCTGCTAATAG
1 AGCTGCTAATAG
86150599 CGGTAAACGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (23 bp):
AGCTGCTAATAGAAATGCAGCAA
Found at i:86151236 original size:18 final size:18
Alignment explanation
Indices: 86151213--86151247 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86151203 CAGAGAAGCA
86151213 GGCCCACGTGGCCCATTG
1 GGCCCACGTGGCCCATTG
**
86151231 GGCCCATTTGGCCCATT
1 GGCCCACGTGGCCCATT
86151248 AAGGTCCAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.37, G:0.29, T:0.23
Consensus pattern (18 bp):
GGCCCACGTGGCCCATTG
Found at i:86156128 original size:14 final size:13
Alignment explanation
Indices: 86156105--86156136 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
86156095 GGAATATCAA
86156105 AACAATAATTAAG
1 AACAATAATTAAG
86156118 AACAGATAATTAAG
1 AACA-ATAATTAAG
86156132 AACAA
1 AACAA
86156137 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.09, G:0.09, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:86159010 original size:33 final size:34
Alignment explanation
Indices: 86158963--86159034 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 34
86158953 AACAGTGCAT
* * * *
86158963 ACAGTAACGGTCTAGGCCTGAGCCCTATTCATTA
1 ACAGTAACAGTCTAGGCCTAAGCCCTATGCAGTA
86158997 ACAGT-ACAGTCTAGGCCTAAGCCCTATGCAGTA
1 ACAGTAACAGTCTAGGCCTAAGCCCTATGCAGTA
86159030 ACAGT
1 ACAGT
86159035 GTGGGCCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 29 0.85
34 5 0.15
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (34 bp):
ACAGTAACAGTCTAGGCCTAAGCCCTATGCAGTA
Found at i:86159867 original size:10 final size:10
Alignment explanation
Indices: 86159852--86159876 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
86159842 GGCCCATTTA
86159852 GCCCATCGAG
1 GCCCATCGAG
86159862 GCCCATCGAG
1 GCCCATCGAG
86159872 GCCCA
1 GCCCA
86159877 GTACAAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.44, G:0.28, T:0.08
Consensus pattern (10 bp):
GCCCATCGAG
Found at i:86166467 original size:11 final size:11
Alignment explanation
Indices: 86166431--86166486 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
86166421 CATGGTATGT
86166431 ATGATATGCAC
1 ATGATATGCAC
* *
86166442 ATGACATG--T
1 ATGATATGCAC
86166451 ATGATATGCAC
1 ATGATATGCAC
*
86166462 ATGATATG--T
1 ATGATATGCAC
86166471 ATGATATGCAC
1 ATGATATGCAC
86166482 ATGAT
1 ATGAT
86166487 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:86166486 original size:20 final size:20
Alignment explanation
Indices: 86166420--86166486 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
86166410 ATTTTGATAA
*
86166420 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86166440 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
86166460 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86166480 ACATGAT
1 ACATGAT
86166487 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86166604 original size:25 final size:24
Alignment explanation
Indices: 86166536--86166612 Score: 120
Period size: 23 Copynumber: 3.2 Consensus size: 24
86166526 GAGGAAGTGC
*
86166536 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
86166560 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
86166583 AAAAGGGCTTTTTGCCCCAGTTATT
1 AAAAGGGC-TTATGCCCCAGTTATT
86166608 AAAAG
1 AAAAG
86166613 AGACTAGGCC
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
23 22 0.45
24 7 0.14
25 20 0.41
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:86166856 original size:31 final size:31
Alignment explanation
Indices: 86166821--86166883 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
86166811 CGTTTACAGT
*
86166821 AAAGGCTTCAGCCTAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
** **
86166852 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
86166883 A
1 A
86166884 GTGTTAAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:86167918 original size:37 final size:37
Alignment explanation
Indices: 86167877--86167954 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
86167867 CAATTCATCA
86167877 CATACTCTTTTAACCATTCCAACAAGTATCAAATGGC
1 CATACTCTTTTAACCATTCCAACAAGTATCAAATGGC
86167914 CATACTCTTTTAACCATTCCAACAAGTATCAAATGGC
1 CATACTCTTTTAACCATTCCAACAAGTATCAAATGGC
86167951 CATA
1 CATA
86167955 ATAACACATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.36, C:0.27, G:0.08, T:0.29
Consensus pattern (37 bp):
CATACTCTTTTAACCATTCCAACAAGTATCAAATGGC
Found at i:86168482 original size:42 final size:42
Alignment explanation
Indices: 86168423--86168503 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
86168413 CTCAAAGAAC
86168423 GGCTTACGGATAGAAGTACATCATCAATCCAACCAAACAAAT
1 GGCTTACGGATAGAAGTACATCATCAATCCAACCAAACAAAT
*
86168465 GGCTTACGGATAGAAGTACATCATCAATTCAACCAAACA
1 GGCTTACGGATAGAAGTACATCATCAATCCAACCAAACA
86168504 CACCAGATGC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.20
Consensus pattern (42 bp):
GGCTTACGGATAGAAGTACATCATCAATCCAACCAAACAAAT
Found at i:86168562 original size:33 final size:33
Alignment explanation
Indices: 86168502--86168642 Score: 167
Period size: 33 Copynumber: 4.2 Consensus size: 33
86168492 TTCAACCAAA
* * *
86168502 CACACCAGATGCTCACT-CAAGCCAATCCACCCAT
1 CACACCA-ATGCTCA-TAAAAGCTAATCCAACCAT
* *
86168536 CGCACCAATGGTCATAAAAGCTAATCCAACCAT
1 CACACCAATGCTCATAAAAGCTAATCCAACCAT
* *
86168569 CACACCAATGCTCATAAGAGCTAAACCAACCAT
1 CACACCAATGCTCATAAAAGCTAATCCAACCAT
* *
86168602 CACACCAATGCTCATAAGAGCTAATCCAACCAA
1 CACACCAATGCTCATAAAAGCTAATCCAACCAT
*
86168635 AACACCAA
1 CACACCAA
86168643 ATAGAGAGTA
Statistics
Matches: 94, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
32 1 0.01
33 87 0.93
34 6 0.06
ACGTcount: A:0.40, C:0.35, G:0.09, T:0.15
Consensus pattern (33 bp):
CACACCAATGCTCATAAAAGCTAATCCAACCAT
Found at i:86172162 original size:38 final size:38
Alignment explanation
Indices: 86172113--86172311 Score: 240
Period size: 38 Copynumber: 5.2 Consensus size: 38
86172103 GGCTCAAAGG
* *
86172113 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
* *
86172151 CCCGGATATAATACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
* * * *
86172189 CCCGGATATATTACCAGCACGAAGCCTACGAGATTTAA
1 CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
* *
86172227 CCCGGATATAATATCAACA-TGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAA
* * * *
86172265 CCCGGATATATTACTAGCA-TGAAACCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAA
86172303 CCCGGATAT
1 CCCGGATAT
86172312 CATATTTCGA
Statistics
Matches: 140, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
38 140 1.00
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAA
Found at i:86172208 original size:76 final size:76
Alignment explanation
Indices: 86172113--86172311 Score: 265
Period size: 76 Copynumber: 2.6 Consensus size: 76
86172103 GGCTCAAAGG
* * * *
86172113 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCT
1 CCCGGATATATTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAACACGAAGCCT
86172178 GCAGGATTTAA
66 GCAGGATTTAA
* * * * *
86172189 CCCGGATATATTACCAGCACGAAGCCTACGAGATTTAACCCGGATATAATATCAACATGAAGCCT
1 CCCGGATATATTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAACACGAAGCCT
*
86172254 GCGGGATTTAA
66 GCAGGATTTAA
* * *
86172265 CCCGGATATATTACTAGCA-TGAAACCTGTGGGATTTAACCCGGATAT
1 CCCGGATATATTACCAGCACT-AAGCCTGCGGGATTTAACCCGGATAT
86172312 CATATTTCGA
Statistics
Matches: 106, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
76 106 1.00
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.23
Consensus pattern (76 bp):
CCCGGATATATTACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAACACGAAGCCT
GCAGGATTTAA
Found at i:86177388 original size:38 final size:37
Alignment explanation
Indices: 86177337--86177538 Score: 228
Period size: 38 Copynumber: 5.3 Consensus size: 37
86177327 GGATCAAAGG
* *
86177337 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCG-ATATATTACCAGCACTAAGCCTGCGGGATTTAA
* * *
86177375 CCCGATTATAATACCAGCACGAAGCCTGCAGGATTTAA
1 CCCGA-TATATTACCAGCACTAAGCCTGCGGGATTTAA
* * *
86177413 CCTGGATATATTTCCAGCACGAAGCCTGCGGGATTTAA
1 CC-CGATATATTACCAGCACTAAGCCTGCGGGATTTAA
*
86177451 CCCAGATATATTACAAGCA-TGAAGCCTGCGGGATTTAA
1 CCC-GATATATTACCAGCACT-AAGCCTGCGGGATTTAA
*
86177489 CCCAGATATATTACAAGCA-TGAAGCCTGCGGGATTTAA
1 CCC-GATATATTACCAGCACT-AAGCCTGCGGGATTTAA
86177527 CCCGGATATATT
1 CCC-GATATATT
86177539 TTTCGATAAA
Statistics
Matches: 148, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
37 1 0.01
38 145 0.98
39 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.24
Consensus pattern (37 bp):
CCCGATATATTACCAGCACTAAGCCTGCGGGATTTAA
Found at i:86182734 original size:38 final size:38
Alignment explanation
Indices: 86182539--86182733 Score: 250
Period size: 38 Copynumber: 5.1 Consensus size: 38
86182529 AAAGGCTCGA
* *
86182539 ATATAATACCAGCACT-AGGCCTGCAGGATTTAACCC-G
1 ATATAATACCAGCA-TGAAGCCTGCGGGATTTAACCCGG
* *
86182576 ATTATAATACCAGCACGAAGCCTGCAGGATTTAACCCGG
1 A-TATAATACCAGCATGAAGCCTGCGGGATTTAACCCGG
* * *
86182615 ATTTATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGG
* * * *
86182653 ATATAATACGACCATGAAGCCTGTGGGATTTAACCTGG
1 ATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGG
*
86182691 ATATATTACCAGCATGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGG
86182729 ATATA
1 ATATA
86182734 TATTTCGATA
Statistics
Matches: 138, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
37 1 0.01
38 135 0.98
39 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGG
Found at i:86187112 original size:6 final size:6
Alignment explanation
Indices: 86187103--86187132 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
86187093 AAAAAGAAAA
86187103 TGATTT TGATTT TGATTT TGATTT TGATTT
1 TGATTT TGATTT TGATTT TGATTT TGATTT
86187133 CTACTTTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.67
Consensus pattern (6 bp):
TGATTT
Found at i:86188177 original size:23 final size:23
Alignment explanation
Indices: 86188151--86188196 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
86188141 GTATTATTGG
* *
86188151 ACCAAAGTGCCAGTAACATAAGT
1 ACCAAAGTACCAGTAACAAAAGT
*
86188174 ACCAAAGTACTAGTAACAAAAGT
1 ACCAAAGTACCAGTAACAAAAGT
86188197 CTCCTATTGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.48, C:0.20, G:0.15, T:0.17
Consensus pattern (23 bp):
ACCAAAGTACCAGTAACAAAAGT
Found at i:86188506 original size:30 final size:30
Alignment explanation
Indices: 86188470--86188529 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
86188460 ATAGAGACTC
*
86188470 TGATAAAGCATTGTAATCACCCCTTTTGAT
1 TGATAAAGCATTGTAATCACCCATTTTGAT
*
86188500 TGATAAAGCATTGTAATCAGCCATTTTGAT
1 TGATAAAGCATTGTAATCACCCATTTTGAT
86188530 CAATAAAGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.37
Consensus pattern (30 bp):
TGATAAAGCATTGTAATCACCCATTTTGAT
Found at i:86188536 original size:30 final size:30
Alignment explanation
Indices: 86188472--86188537 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
86188462 AGAGACTCTG
* **
86188472 ATAAAGCATTGTAATCACCCCTTTTGATTG
1 ATAAAGCATTGTAATCACCCATTTTGATCA
*
86188502 ATAAAGCATTGTAATCAGCCATTTTGATCA
1 ATAAAGCATTGTAATCACCCATTTTGATCA
86188532 ATAAAG
1 ATAAAG
86188538 TACATCCTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (30 bp):
ATAAAGCATTGTAATCACCCATTTTGATCA
Found at i:86190394 original size:43 final size:43
Alignment explanation
Indices: 86190236--86190383 Score: 192
Period size: 43 Copynumber: 3.4 Consensus size: 43
86190226 CGAGATTACA
** * **
86190236 TGTAAGACCATGTCTGGGACATTGTTATTGTGT-TTTGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGT-TATACGATTATG
*
86190279 TGTAAGACCATGTCTGGGACATTGGCATCATTATACGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATACGATTATG
86190322 TGTAAGACCATGTCTGGGACATTGGCATCGTTA-ATCGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTTATA-CGATTATG
* *
86190365 TGTAAGACCCTCTCTGGGA
1 TGTAAGACCATGTCTGGGA
86190384 TGGTAGCATC
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
42 2 0.02
43 92 0.98
ACGTcount: A:0.24, C:0.16, G:0.25, T:0.35
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTTATACGATTATG
Found at i:86193396 original size:47 final size:45
Alignment explanation
Indices: 86193327--86193495 Score: 169
Period size: 49 Copynumber: 3.6 Consensus size: 45
86193317 CATGGGATAA
* * *
86193327 GATGCTATGTCCCAGATAGGTCTTACACTGACTAGCACATCAAAGTT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTA-CACATC-AAGCT
* * * * *
86193374 GATGCCATGTCCCAGATAGGTCTTACACTAACTTCCATATATCGAGGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGAC-T--ACACATC-AAGCT
* *
86193423 AATGCCATGTCCCAGACAGGTCTTACACTGAC-ACACAACAAGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTACACATCAAGCT
* *
86193467 GACGCCATGTCACAGACAGGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
86193496 AGCTTGTATA
Statistics
Matches: 102, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
44 30 0.29
45 4 0.04
47 30 0.29
48 1 0.01
49 36 0.35
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (45 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTACACATCAAGCT
Found at i:86193512 original size:93 final size:96
Alignment explanation
Indices: 86193328--86193541 Score: 274
Period size: 93 Copynumber: 2.3 Consensus size: 96
86193318 ATGGGATAAG
* * * * * * *
86193328 ATGCTATGTCCCAGATAGGTCTTACACTGACTAGCACATCAAAGTTGATGCCATGTCCCAGATAG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTAGCACAACAAAGCTGACGCCATGTCACAGACAG
*
86193393 GTCTTACACTAACTTCCATATATCGAGGCTA
66 GTCTTACACTAACTTCCATATATCGAGGCCA
86193424 ATGCCATGTCCCAGACAGGTCTTACACTGAC-A-CACAAC-AAGCTGACGCCATGTCACAGACAG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTAGCACAACAAAGCTGACGCCATGTCACAGACAG
* ** * *
86193486 GTCTTACACTAGCTTGTATATCTCGAGGCCG
66 GTCTTACACTAACTTCCATATATCGAGGCCA
*
86193517 ATG-CATGTCCCAGACATGTCTTACA
1 ATGCCATGTCCCAGACAGGTCTTACA
86193542 TTGGCTTGTA
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
92 21 0.20
93 48 0.46
94 5 0.05
95 1 0.01
96 29 0.28
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (96 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTAGCACAACAAAGCTGACGCCATGTCACAGACAG
GTCTTACACTAACTTCCATATATCGAGGCCA
Found at i:86193538 original size:48 final size:47
Alignment explanation
Indices: 86193472--86193639 Score: 223
Period size: 48 Copynumber: 3.6 Consensus size: 47
86193462 AAGCTGACGC
* *
86193472 CATGTCACAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCT-GAGGCCGATG
* *
86193520 CATGTCCCAGACATGTCTTACATTGGCTTGTATATCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATC-TGAGGCCGATG
* * * *
86193568 CATGTCCCAGACATGTCTTACACTGGCTCT-CATA-ATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTGAGGCCGATG
86193614 CATGTCCCAGACATGTCTTACACTAG
1 CATGTCCCAGACATGTCTTACACTAG
86193640 AACACATATC
Statistics
Matches: 109, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
46 35 0.32
48 72 0.66
49 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.29
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTGAGGCCGATG
Found at i:86194257 original size:20 final size:18
Alignment explanation
Indices: 86194220--86194270 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
86194210 CTATAGCAAC
86194220 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
86194237 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
86194257 TTACAACTTTACAA
1 TCACAA-TTTACAA
86194271 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:86196089 original size:16 final size:15
Alignment explanation
Indices: 86196047--86196091 Score: 56
Period size: 14 Copynumber: 3.0 Consensus size: 15
86196037 GTTATGTAAC
86196047 AAGAAAACCAAG-TA
1 AAGAAAACCAAGATA
*
86196061 AAGAAATCCAAGATA
1 AAGAAAACCAAGATA
*
86196076 GAGAAAACCCAAGATA
1 AAGAAAA-CCAAGATA
86196092 CGATACTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 11 0.42
15 7 0.27
16 8 0.31
ACGTcount: A:0.60, C:0.16, G:0.16, T:0.09
Consensus pattern (15 bp):
AAGAAAACCAAGATA
Found at i:86197216 original size:40 final size:40
Alignment explanation
Indices: 86197171--86197279 Score: 155
Period size: 40 Copynumber: 2.7 Consensus size: 40
86197161 AAAAAAGCCG
*
86197171 CTATAGATAGAGCATTAGTGGCGCTTTTTGAAAAACACCA
1 CTATAGATCGAGCATTAGTGGCGCTTTTTGAAAAACACCA
* ***
86197211 CTATAGATCTAGCATTAGTGGCGCTTTTTGAAAAATGTCA
1 CTATAGATCGAGCATTAGTGGCGCTTTTTGAAAAACACCA
* *
86197251 CTATAGATCGAGCATTAGCGGTGCTTTTT
1 CTATAGATCGAGCATTAGTGGCGCTTTTT
86197280 AAATAACGCT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (40 bp):
CTATAGATCGAGCATTAGTGGCGCTTTTTGAAAAACACCA
Found at i:86197295 original size:40 final size:40
Alignment explanation
Indices: 86197171--86197296 Score: 148
Period size: 40 Copynumber: 3.1 Consensus size: 40
86197161 AAAAAAGCCG
* * *
86197171 CTATAGATAGAGCATTAGTGGCGCTTTTTGAAAAACACCA
1 CTATAGATCGAGCATTAGTGGCGCTTTTTGAAAAACGCTA
* *
86197211 CTATAGATCTAGCATTAGTGGCGCTTTTTGAAAAATG-TCA
1 CTATAGATCGAGCATTAGTGGCGCTTTTTGAAAAACGCT-A
* * *
86197251 CTATAGATCGAGCATTAGCGGTGCTTTTT-AAATAACGCTG
1 CTATAGATCGAGCATTAGTGGCGCTTTTTGAAA-AACGCTA
86197291 CTATAG
1 CTATAG
86197297 GTCAACCATT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
39 3 0.04
40 69 0.95
41 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.32
Consensus pattern (40 bp):
CTATAGATCGAGCATTAGTGGCGCTTTTTGAAAAACGCTA
Found at i:86197434 original size:40 final size:40
Alignment explanation
Indices: 86197377--86197588 Score: 151
Period size: 40 Copynumber: 5.2 Consensus size: 40
86197367 AGCTTTAGTG
*
86197377 GCATTAGCGGTGCTTTTTGAAAAACACCGCTATAGATCGA
1 GCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCGA
* *
86197417 GCATTAGCGGTGATTTTTGGAAAACGCCAAACGCCGCTATAGATCAA
1 GCATTAGCGGTGCTTTTT-G--AA----AAACGCCGCTATAGATCGA
* ** * * * *
86197464 GAATTAGCGACGCTTTTT---AAATGCTGCTATAGGTTGA
1 GCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCGA
* * * * *
86197501 CCATTACCGGTGTTTTTTGAAAAACGCCACTATAAATCGA
1 GCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCGA
* * * **
86197541 GCATTAGTGGTGCTTTTTGAAAAGCACTACTATAGATCGA
1 GCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCGA
*
86197581 GCTTTAGC
1 GCATTAGC
86197589 AAAGCTGTTT
Statistics
Matches: 128, Mismatches: 34, Indels: 20
0.70 0.19 0.11
Matches are distributed among these distances:
37 26 0.20
40 68 0.53
41 1 0.01
43 2 0.02
47 31 0.24
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (40 bp):
GCATTAGCGGTGCTTTTTGAAAAACGCCGCTATAGATCGA
Found at i:86197822 original size:30 final size:29
Alignment explanation
Indices: 86197756--86197818 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
86197746 AATATTTGTT
* *
86197756 AAAAATGAAAAAAAATTAAAATACTATGA
1 AAAAATAAAAAAAAATTAAAAAACTATGA
86197785 AAAAATAAAAAAAAATTAAAAAACTATGA
1 AAAAATAAAAAAAAATTAAAAAACTATGA
86197814 AAAAA
1 AAAAA
86197819 ATAATTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (29 bp):
AAAAATAAAAAAAAATTAAAAAACTATGA
Found at i:86197966 original size:21 final size:21
Alignment explanation
Indices: 86197941--86197994 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
86197931 TATCATTATA
*
86197941 GTTTAGGGTTTACGATTTATG
1 GTTTAGGGTTTACGATTTAGG
* * * *
86197962 TTTTAGTGTATATGATTTAGG
1 GTTTAGGGTTTACGATTTAGG
*
86197983 GTTTAAGGTTTA
1 GTTTAGGGTTTA
86197995 GGAGTTACTA
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.02, G:0.26, T:0.50
Consensus pattern (21 bp):
GTTTAGGGTTTACGATTTAGG
Found at i:86199430 original size:28 final size:29
Alignment explanation
Indices: 86199398--86199469 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 29
86199388 ATAATGAGAT
86199398 TAGCACTAAGTGTGCGAGTTT-AAT-TGTA
1 TAGCACTAAGTGTGCGAGTTTGAATAT-TA
*
86199426 TAGCACTAAGTGTGCGAGTTTGACTATTA
1 TAGCACTAAGTGTGCGAGTTTGAATATTA
86199455 -AGCACTAAGTGTGCG
1 TAGCACTAAGTGTGCG
86199470 GACTTACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 36 0.88
29 4 0.10
30 1 0.02
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (29 bp):
TAGCACTAAGTGTGCGAGTTTGAATATTA
Found at i:86201079 original size:14 final size:14
Alignment explanation
Indices: 86201062--86201143 Score: 94
Period size: 14 Copynumber: 5.9 Consensus size: 14
86201052 TATGGTTTAT
86201062 GGTTTAAGGGTTAG
1 GGTTTAAGGGTTAG
86201076 GGTTTAAGGGTTAG
1 GGTTTAAGGGTTAG
* * *
86201090 AGTTTAAAGTTTAG
1 GGTTTAAGGGTTAG
*
86201104 GGATTAAGGGTTAG
1 GGTTTAAGGGTTAG
* *
86201118 GGGTTAAGTGTTAGG
1 GGTTTAAGGGTTA-G
86201133 GGTTT-AGGGTT
1 GGTTTAAGGGTT
86201144 TATTTTTATG
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
14 51 0.91
15 5 0.09
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (14 bp):
GGTTTAAGGGTTAG
Found at i:86209224 original size:3 final size:3
Alignment explanation
Indices: 86209210--86209320 Score: 75
Period size: 3 Copynumber: 36.7 Consensus size: 3
86209200 GGAAAACAAT
* * * *
86209210 ATA ATG ATA ATA ATA ATA GTA ATA CGATA GTA ATA ATA ATA ATA ACA
1 ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA ATA
* * * * *
86209257 A-A ATA GA-A ATA ATA ATA GTG GTGA A-A ATA ATA ATA ATA GTA ATG
1 ATA ATA -ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
*
86209301 ATA ATG ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT
86209321 GTAAGTAAAT
Statistics
Matches: 84, Mismatches: 17, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
2 5 0.06
3 75 0.89
4 1 0.01
5 3 0.04
ACGTcount: A:0.58, C:0.02, G:0.11, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:86209243 original size:20 final size:20
Alignment explanation
Indices: 86209215--86209365 Score: 68
Period size: 20 Copynumber: 7.7 Consensus size: 20
86209205 ACAATATAAT
*
86209215 GATAATAATAATAGTAATAC
1 GATAATAATAATAATAATAC
*
86209235 GATAGTAATAATAATAATAAC
1 GATAATAATAATAATAAT-AC
* *
86209256 -AAAATAGA-AATAATAATAGT
1 GATAATA-ATAATAATAATA-C
*
86209276 GGTGAA-AATAATAATAATA-
1 GAT-AATAATAATAATAATAC
* *
86209295 G-TAATGATAATGATAATA-
1 GATAATAATAATAATAATAC
*
86209313 -ATAATAAT-GTAAGTAAATAC
1 GATAATAATAATAA-T-AATAC
* **
86209333 GAAAATAA-AATATATAATGT
1 GATAATAATAATA-ATAATAC
*
86209353 GATAATAACAATA
1 GATAATAATAATA
86209366 TAAAATTAAT
Statistics
Matches: 99, Mismatches: 17, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
17 4 0.04
18 19 0.19
19 6 0.06
20 40 0.40
21 27 0.27
22 3 0.03
ACGTcount: A:0.58, C:0.03, G:0.11, T:0.28
Consensus pattern (20 bp):
GATAATAATAATAATAATAC
Found at i:86209243 original size:23 final size:23
Alignment explanation
Indices: 86209217--86209275 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
86209207 AATATAATGA
* **
86209217 TAATAATAATAGTAATACGATAG
1 TAATAATAATAGTAACAAAATAG
*
86209240 TAATAATAATAATAACAAAATAG
1 TAATAATAATAGTAACAAAATAG
*
86209263 AAATAATAATAGT
1 TAATAATAATAGT
86209276 GGTGAAAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.29
Consensus pattern (23 bp):
TAATAATAATAGTAACAAAATAG
Found at i:86209691 original size:3 final size:3
Alignment explanation
Indices: 86209683--86209761 Score: 60
Period size: 3 Copynumber: 27.7 Consensus size: 3
86209673 AATGAGATAC
* * *
86209683 AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT -AT GAA- ATT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT
* * *
86209727 -AT AAT AAT -AT AAT AAT -GT AAC AAT AAT AAG AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
86209762 AAGGGAAATA
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
2 8 0.14
3 50 0.85
4 1 0.02
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:86211468 original size:88 final size:88
Alignment explanation
Indices: 86211363--86212386 Score: 1317
Period size: 88 Copynumber: 11.8 Consensus size: 88
86211353 TCAGTCTACC
* * *
86211363 CCAATGCCATTACAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTACAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGCTGAAACTTCAAGGAGAT
* * *
86211428 ACAAACTGTGGCTTCGAGCTGTT
66 ACGAACTGTGGCTTCGAGCCGCT
* * * ** * *
86211451 CCAATGCCATTTTAGGGAGAAGAGATTTGTAGTCTCGATCTACTCCACTGGAACTTCAAGGCGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGCTGAAACTTCAAGGAGAT
* *
86211516 ACGAACTGTGGCTTCGAGTCGCC
66 ACGAACTGTGGCTTCGAGCCGCT
*
86211539 CCAATGCCATTAT-AGGGAGAAGAGATTTGTAG-CTTCGATCTACTCTGCT-AGAACTTCAAGAA
1 CCAATGCCATT-TCAGGGAGAAGAGATTTGTAGCCTT-GATCTACTCTGCTGA-AACTTCAAGGA
* * *
86211601 GATACGAATTGTAGCTTCGAGCTGCT
63 GATACGAACTGTGGCTTCGAGCCGCT
* * * *
86211627 CCAATGCCATTTCAAGGAGAAGAGATTTGTATCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGCTGAAACTTCAAGGAGAT
* *
86211692 A-AAAAT-T-G--T---G--GCT
66 ACGAACTGTGGCTTCGAGCCGCT
* * *
86211705 CCACTGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGTTGAAACTTCAAGAAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGCTGAAACTTCAAGGAGAT
86211770 ACGAACTGTGGCTTCGAGCCGCT
66 ACGAACTGTGGCTTCGAGCCGCT
* * *
86211793 CCAATGCCTTTTCAGGGAGAAGAGATTTGTAGCCTCGAACTACTCTGCTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGCTGAAACTTCAAGGAGAT
86211858 ACGAACTGTGGCTTCGAGCCGCT
66 ACGAACTGTGGCTTCGAGCCGCT
* * * * *
86211881 CCAATCCCATTTTAGGGAGAAGAGATTTGTAGCTTTGAACTACTCTGCTGATACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGCTGAAACTTCAAGGAGAT
* *
86211946 ATGAACTGTGGCTTCGAGCCGTT
66 ACGAACTGTGGCTTCGAGCCGCT
* * **
86211969 CCAATGCCATTTCAAGGAGAAGAGATTTGTAGCCTCGATCTACTCCACTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGCTGAAACTTCAAGGAGAT
* *
86212034 ATGAACTATGGCTTCGAGCCGCT
66 ACGAACTGTGGCTTCGAGCCGCT
* * *
86212057 CCAATGCCATTTCTGGGAGAAGAGATTTATAG-CTTCGATCTACTCTGCTGGAACTTCAAGGAGA
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTT-GATCTACTCTGCTGAAACTTCAAGGAGA
* *
86212121 TACGAATTGTGGCTTCGAGCCACT
65 TACGAACTGTGGCTTCGAGCCGCT
* *
86212145 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGCTGAAACTTCAAGGAGAT
*
86212210 ACAAACTGTGGCTTCGAGCCGCT
66 ACGAACTGTGGCTTCGAGCCGCT
*
86212233 CCAATGCCATTTCAGGGAGAAGAGATTTGTAG-CTTCGATCTACTCTGCTGGAACTTCAAGGAGA
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTT-GATCTACTCTGCTGAAACTTCAAGGAGA
* * * *
86212297 TACAAATTGTGGCTTCAAGCCGTT
65 TACGAACTGTGGCTTCGAGCCGCT
* * * *
86212321 CCAATGCCATTTCAGGAATAAGAGATTTGTAG-CTTCGATCTACTCTACT-AGAACTTTAAGGAG
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTT-GATCTACTCTGCTGA-AACTTCAAGGAG
86212384 ATA
64 ATA
86212387 AGAATTGTTG
Statistics
Matches: 821, Mismatches: 95, Indels: 40
0.86 0.10 0.04
Matches are distributed among these distances:
78 62 0.08
79 3 0.00
80 2 0.00
81 1 0.00
83 2 0.00
85 1 0.00
86 2 0.00
87 10 0.01
88 732 0.89
89 6 0.01
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (88 bp):
CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTACTCTGCTGAAACTTCAAGGAGAT
ACGAACTGTGGCTTCGAGCCGCT
Found at i:86212079 original size:264 final size:264
Alignment explanation
Indices: 86211363--86212394 Score: 1458
Period size: 264 Copynumber: 3.9 Consensus size: 264
86211353 TCAGTCTACC
* * *
86211363 CCAATGCCATTACAGGGAGAAGAGATTTGTAGCCTTGATCTACTCCGCTGAAACTACAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
* * *
86211428 ACAAACTGTGGCTTCGAGCTGTTCCAATGCCATTTTAGGGAGAAGAGATTTGTAGTCTCGATCTA
66 ACAAACTGTGGCTTCGAGCCGTTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTA
* * * *
86211493 CTCCACTGGAACTTCAAGGCGATACGAACTGTGGCTTCGAGTCGCCCCAATGCCATTAT-AGGGA
131 CTCCACTGAAACTTCAAGGAGATACGAACTGTGGCTTCGAGCCGCTCCAATGCCATT-TCAGGGA
* *
86211557 GAAGAGATTTGTAGCTTCGATCTACTCTGCTAGAACTTCAAGAAGATACGAATTGTAGCTTCGAG
195 GAAGAGATTTGTAGCTTCGATCTACTCTGCTAGAACTTCAAGGAGATACGAATTGTGGCTTCGAG
*
86211622 CTGCT
260 CCGCT
* *
86211627 CCAATGCCATTTCAAGGAGAAGAGATTTGTATCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
* * *
86211692 A-AAAAT-T-G--T-G-G-C--TCCACTGCCATTTCAGGGAGAAGAGATTTGTAGCCTTGATCTA
66 ACAAACTGTGGCTTCGAGCCGTTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTA
*** * *
86211747 CTCTGTTGAAACTTCAAGAAGATACGAACTGTGGCTTCGAGCCGCTCCAATGCCTTTTCAGGGAG
131 CTCCACTGAAACTTCAAGGAGATACGAACTGTGGCTTCGAGCCGCTCCAATGCCATTTCAGGGAG
* * *
86211812 AAGAGATTTGTAGCCTCGAACTACTCTGCT-GAAACTTCAAGGAGATACGAACTGTGGCTTCGAG
196 AAGAGATTTGTAGCTTCGATCTACTCTGCTAG-AACTTCAAGGAGATACGAATTGTGGCTTCGAG
86211876 CCGCT
260 CCGCT
* * * * * * *
86211881 CCAATCCCATTTTAGGGAGAAGAGATTTGTAGCTTTGAACTACTCTGCTGATACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
** *
86211946 ATGAACTGTGGCTTCGAGCCGTTCCAATGCCATTTCAAGGAGAAGAGATTTGTAGCCTCGATCTA
66 ACAAACTGTGGCTTCGAGCCGTTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTA
* * *
86212011 CTCCACTGAAACTTCAAGGAGATATGAACTATGGCTTCGAGCCGCTCCAATGCCATTTCTGGGAG
131 CTCCACTGAAACTTCAAGGAGATACGAACTGTGGCTTCGAGCCGCTCCAATGCCATTTCAGGGAG
* *
86212076 AAGAGATTTATAGCTTCGATCTACTCTGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGC
196 AAGAGATTTGTAGCTTCGATCTACTCTGCTAGAACTTCAAGGAGATACGAATTGTGGCTTCGAGC
*
86212141 CACT
261 CGCT
86212145 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
1 CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
* *
86212210 ACAAACTGTGGCTTCGAGCCGCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTA
66 ACAAACTGTGGCTTCGAGCCGTTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTA
** * * * * * * *
86212275 CTCTGCTGGAACTTCAAGGAGATACAAATTGTGGCTTCAAGCCGTTCCAATGCCATTTCAGGAAT
131 CTCCACTGAAACTTCAAGGAGATACGAACTGTGGCTTCGAGCCGCTCCAATGCCATTTCAGGGAG
* * *
86212340 AAGAGATTTGTAGCTTCGATCTACTCTACTAGAACTTTAAGGAGATAAGAATTGT
196 AAGAGATTTGTAGCTTCGATCTACTCTGCTAGAACTTCAAGGAGATACGAATTGT
86212395 TGATTTCAAC
Statistics
Matches: 673, Mismatches: 82, Indels: 26
0.86 0.10 0.03
Matches are distributed among these distances:
253 2 0.00
254 211 0.31
255 3 0.00
256 1 0.00
257 2 0.00
258 1 0.00
259 2 0.00
260 1 0.00
261 2 0.00
262 2 0.00
263 4 0.01
264 441 0.66
265 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (264 bp):
CCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTACTCCGCTGAAACTTCAAGGAGAT
ACAAACTGTGGCTTCGAGCCGTTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCCTCGATCTA
CTCCACTGAAACTTCAAGGAGATACGAACTGTGGCTTCGAGCCGCTCCAATGCCATTTCAGGGAG
AAGAGATTTGTAGCTTCGATCTACTCTGCTAGAACTTCAAGGAGATACGAATTGTGGCTTCGAGC
CGCT
Found at i:86212456 original size:42 final size:43
Alignment explanation
Indices: 86212408--86212651 Score: 172
Period size: 44 Copynumber: 5.7 Consensus size: 43
86212398 TTTCAACCTG
*
86212408 CTCCACTACTGCTTAGGGAGATAGGAT-GGTGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCGGTGGCTTAAATCTA
*** * ** * *
86212450 CTCCACTACTGCTTAGGGAG-TCAAGATTCACCGTCTTTGATTTG
1 CTCCACTACTGCTTAGGGAGAT-AAGA-TCGGTGGCTTAAATCTA
* * ** * **
86212494 CTCCACTACTGCTTTGGGAGATAAGATCTGTAATCTTTAGCCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCGGT-GGCTTAAATCTA
*
86212538 CTCCACTATTGCTTAGGGAGATAAGAT-GGTGGCTTAAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCGGTGGCTTAAATCTA
* * * ** ** *
86212580 CTCCACAACTACTTAGGGAGACAAGATTC-GTCATCTTCGATCTG
1 CTCCACTACTGCTTAGGGAGATAAGA-TCGGT-GGCTTAAATCTA
**
86212624 CTCCACTACTGGATAGGGAGATAAGATC
1 CTCCACTACTGCTTAGGGAGATAAGATC
86212652 TGTAAATTCA
Statistics
Matches: 153, Mismatches: 41, Indels: 15
0.73 0.20 0.07
Matches are distributed among these distances:
41 1 0.01
42 52 0.34
43 10 0.07
44 89 0.58
45 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGATAAGATCGGTGGCTTAAATCTA
Found at i:86212576 original size:130 final size:130
Alignment explanation
Indices: 86212408--86212656 Score: 381
Period size: 130 Copynumber: 1.9 Consensus size: 130
86212398 TTTCAACCTG
* * * *
86212408 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGTCA
1 CTCCACTACTGCTTAGGGAGATAAGATGGTGGCTTAAATCTACTCCACAACTACTTAGGGAGACA
* * * * *
86212473 AGATTCACCGTCTTTGATTTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATCTTTAGCCTA
66 AGATTCACCATCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGATCTGTAATCTTTAGCCTA
*
86212538 CTCCACTATTGCTTAGGGAGATAAGATGGTGGCTTAAATCTACTCCACAACTACTTAGGGAGACA
1 CTCCACTACTGCTTAGGGAGATAAGATGGTGGCTTAAATCTACTCCACAACTACTTAGGGAGACA
** *
86212603 AGATTCGTCATCTTCGATCTGCTCCACTACTGGATAGGGAGATAAGATCTGTAA
66 AGATTCACCATCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGATCTGTAA
86212657 ATTCACCGAT
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
130 106 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (130 bp):
CTCCACTACTGCTTAGGGAGATAAGATGGTGGCTTAAATCTACTCCACAACTACTTAGGGAGACA
AGATTCACCATCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGATCTGTAATCTTTAGCCTA
Found at i:86219394 original size:3 final size:3
Alignment explanation
Indices: 86219374--86219604 Score: 81
Period size: 3 Copynumber: 77.7 Consensus size: 3
86219364 CAAAGACGAG
* * * * * * *
86219374 ATA AAA ATA ATG ATA ATA ATA ATG ATA ATA ATA AGA GTG ATT AT- ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
86219421 TATGA A-A GTA ATA ATA ATA ATA ATA ATA ATA A-A ATA A-A ATA A-A
1 -AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
86219464 TGTG TTA A-A A-A ATA ATA A-A A-A AGGA A-A ACA ATA TATA ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA -ATA ATA ATA
* * * *
86219507 ATA GTA GTA ATA CGATA GTA ATA ATA ATA ATA CAAA AT- ATAA ATA ATA
1 ATA ATA ATA ATA --ATA ATA ATA ATA ATA ATA -ATA ATA AT-A ATA ATA
* * * * * *
86219555 ATA GTG GTGA A-A ATA ATA ATA ATA GTA ATG ATA ATG ATA ATA ATA
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
86219600 ATA AT
1 ATA AT
86219605 GTAAGTAAAT
Statistics
Matches: 172, Mismatches: 36, Indels: 40
0.69 0.15 0.16
Matches are distributed among these distances:
2 22 0.13
3 134 0.78
4 12 0.07
5 4 0.02
ACGTcount: A:0.60, C:0.01, G:0.10, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:86219976 original size:3 final size:3
Alignment explanation
Indices: 86219968--86220028 Score: 51
Period size: 3 Copynumber: 21.7 Consensus size: 3
86219958 AAGGAGATAC
*
86219968 AAT AAT AAT AAT AAT AAT -AT GAA- ATT AAT AAT -AT AAT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* *
86220010 AAT AAT -GT AAC AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
86220029 GCATAAAAGG
Statistics
Matches: 46, Mismatches: 6, Indels: 12
0.72 0.09 0.19
Matches are distributed among these distances:
2 8 0.17
3 37 0.80
4 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:86220006 original size:8 final size:8
Alignment explanation
Indices: 86219969--86220015 Score: 62
Period size: 8 Copynumber: 6.0 Consensus size: 8
86219959 AGGAGATACA
86219969 ATAATAAT
1 ATAATAAT
86219977 AATAATAAT
1 -ATAATAAT
*
86219986 ATGA-AAT
1 ATAATAAT
86219993 -TAATAAT
1 ATAATAAT
86220000 ATAATAAT
1 ATAATAAT
86220008 ATAATAAT
1 ATAATAAT
86220016 GTAACAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
6 2 0.06
7 6 0.18
8 18 0.53
9 8 0.24
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (8 bp):
ATAATAAT
Done.